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{ authenticationService } from '../services';\r\n\r\nexport function handleResponse(response) {\r\n  return response.text().then(text => {\r\n    const data = text && JSON.parse(text);\r\n    if (!response.ok) {\r\n      if ([401, 403].indexOf(response.status) !== -1) {\r\n        // auto logout if 401 Unauthorized or 403 Forbidden response returned from api\r\n        authenticationService.logout();\r\n        window.location.reload(true);\r\n      }\r\n      else if ([409].indexOf(response.status) !== -1) {\r\n        authenticationService.logout();\r\n        window.location = \"/licensing\";\r\n      }\r\n\r\n      const error = (data && data.message) || response.statusText;\r\n      return Promise.reject(error);\r\n    }\r\n\r\n    return data;\r\n  });\r\n}","export const Role = {\r\n\tAdmin: 'Admin',\r\n\tUser: 'User'    \r\n}","import { createBrowserHistory } from 'history';\r\n\r\nexport const history = createBrowserHistory();","import { BehaviorSubject } from \"rxjs\";\r\n\r\nimport { handleResponse } from \"../utils\";\r\n\r\nconst currentUserSubject = new BehaviorSubject(\r\n  JSON.parse(localStorage.getItem(\"currentUser\"))\r\n);\r\n\r\nexport const authenticationService = {\r\n  login,\r\n  logout,\r\n  currentUser: currentUserSubject.asObservable(),\r\n  get currentUserValue() {\r\n    return currentUserSubject.value;\r\n  },\r\n};\r\n\r\nfunction login(email, password) {\r\n  const requestOptions = {\r\n    method: \"POST\",\r\n    headers: { \"Content-Type\": \"application/json\" },\r\n    body: JSON.stringify({ email, password }),\r\n  };\r\n\r\n  return fetch(`/api/user/authenticate`, requestOptions)\r\n    .then(handleResponse)\r\n    .then((user) => {\r\n      // store user details and jwt token in local storage to keep user logged in between page refreshes\r\n      localStorage.setItem(\"currentUser\", JSON.stringify(user));\r\n      currentUserSubject.next(user);\r\n      return user;\r\n    });\r\n}\r\n\r\nfunction logout() {\r\n  //window.location.reload(true); //clear cache\r\n  // remove user from local storage to log user out\r\n  localStorage.removeItem(\"currentUser\");\r\n  currentUserSubject.next(null);\r\n}\r\n","import React from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport { Route, Redirect } from \"react-router-dom\";\r\n\r\nimport { authenticationService } from \"../services\";\r\n\r\nconst PrivateRoute = ({ component: Component, roles, ...rest }) => (\r\n  <Route\r\n    {...rest}\r\n    render={(props) => {\r\n      const currentUser = authenticationService.currentUserValue;\r\n      if (!currentUser) {\r\n        // not logged in so redirect to login page with the return url\r\n        return (\r\n          <Redirect\r\n            to={{ pathname: \"/login\", state: { from: props.location } }}\r\n          />\r\n        );\r\n      }\r\n\r\n      // check if route is restricted by role\r\n      if (roles && roles.indexOf(currentUser.role) === -1) {\r\n        // role not authorised so redirect to home page\r\n        return <Redirect to={{ pathname: \"/\" }} />;\r\n      }\r\n\r\n      // authorised so return component\r\n      return <Component {...props} />;\r\n    }}\r\n  />\r\n);\r\n\r\nPrivateRoute.propTypes = {\r\n  component: PropTypes.oneOfType([PropTypes.object, PropTypes.func]),\r\n  roles: PropTypes.array,\r\n  location: PropTypes.string,\r\n};\r\n\r\nexport { PrivateRoute };\r\n","//import React from 'react';\r\nimport React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\n// make a new context\r\nconst TilesContext = React.createContext();\r\n\r\nexport const withTiles = (Component) => {\r\n  const WrappedComponent = (props) => (\r\n    <TilesContext.Consumer>\r\n      {(context) => <Component {...props} tiles={context} />}\r\n    </TilesContext.Consumer>\r\n  );\r\n\r\n  WrappedComponent.displayName = `withTiles(${\r\n    Component.displayName || Component.name || \"Component\"\r\n  })`;\r\n\r\n  return WrappedComponent;\r\n};\r\n\r\n// create provider component\r\nexport class TilesProvider extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n\r\n    this.state = {};\r\n\r\n    this.visibleImage = [];\r\n    this.visibleImageUpdatedAt = [];\r\n    this.coloredImages = [];\r\n    this.coloredImagesUpdatedAt = [];\r\n    this.imgWidth = 0;\r\n    this.imgHeight = 0;\r\n    this.pageIndex = 0;\r\n    this.histogramConfig = null;\r\n    this.selectedLayerColor = \"#fff\";\r\n    this.selcetedLayerIndex = 0;\r\n    this.annotationCount = 0;\r\n    this.firstIteration = true;\r\n    this.accPoints = [];\r\n    this.pointCount = 0;\r\n    this.galleryVisible = false;\r\n    this.isMousedown = false;\r\n    this.isOnImage = false;\r\n    this.IsInOtherImage = false;\r\n    this.onPageInput = false;\r\n    this.strAnnoCount = [];\r\n    this.strSubtypesPages = [];\r\n    this.structure = null;\r\n    this.structureBefore = null;\r\n    this.graphAcc = [];\r\n    this.roiProps = {\r\n      color: \"\",\r\n      isSubtype: false,\r\n      subtypeName: \"\",\r\n      pos: -1,\r\n    };\r\n    this.histoClassificationStarted = false;\r\n    this.fileId = null;\r\n    this.zLevel = 0;\r\n    this.chainLeaderId = null;\r\n    this.transformationMatrix = {};\r\n    this.transformationFactor = {};\r\n    this.transformationOffset = {};\r\n  }\r\n\r\n  getIndex = (a) => {\r\n    if (this.strAnnoCount) {\r\n      for (let i = 0; i < this.strAnnoCount.length; i++) {\r\n        if (this.strAnnoCount[i][0] === a) {\r\n          return i;\r\n        }\r\n      }\r\n    }\r\n    return -1;\r\n  };\r\n\r\n  getIndexObj = (a) => {\r\n    if (this.strSubtypesPages) {\r\n      for (let i = 0; i < this.strSubtypesPages.length; i++) {\r\n        if (this.strSubtypesPages[i].id === a) {\r\n          return i;\r\n        }\r\n      }\r\n    }\r\n    return -1;\r\n  };\r\n\r\n  resetStPg = () => {\r\n    if (this.strSubtypesPages) {\r\n      for (let i = 0; i < this.strSubtypesPages.length; i++) {\r\n        this.strSubtypesPages[i].page = 0;\r\n      }\r\n    }\r\n  };\r\n\r\n  render() {\r\n    return (\r\n      <TilesContext.Provider\r\n        value={{\r\n          state: this.state,\r\n\r\n          // Visible Images\r\n          setVisibleImage: (a) => {\r\n            this.visibleImage = a;\r\n          },\r\n          clearTiles: () => {\r\n            for (let key of Object.keys(this.visibleImage)) {\r\n              this.visibleImage[key] = null;\r\n            }\r\n            for (let key of Object.keys(this.visibleImage)) {\r\n              delete this.visibleImage[key];\r\n            }\r\n            for (let key of Object.keys(this.coloredImages)) {\r\n              this.coloredImages[key] = null;\r\n            }\r\n            for (let key of Object.keys(this.coloredImages)) {\r\n              delete this.coloredImages[key];\r\n            }\r\n          },\r\n          pushVisibleImage: (a, tileId) => {\r\n            this.visibleImage[tileId] = a;\r\n            this.visibleImageUpdatedAt[tileId] = new Date().getTime();\r\n\r\n            // 275 imgs ~ 1GB RAM\r\n            if (Object.keys(this.visibleImage).length > 150) {\r\n              let sorted = [];\r\n              for (let tileId in this.visibleImageUpdatedAt) {\r\n                sorted.push([tileId, this.visibleImageUpdatedAt[tileId]]);\r\n              }\r\n              sorted.sort(function (a, b) {\r\n                return a[1] - b[1];\r\n              });\r\n\r\n              let i = 0;\r\n              while (\r\n                Object.keys(this.visibleImage).length > 125 &&\r\n                i < sorted.length\r\n              ) {\r\n                if (\r\n                  sorted &&\r\n                  sorted[i] &&\r\n                  this.visibleImage[sorted[i][0]] &&\r\n                  this.visibleImageUpdatedAt[sorted[i][0]] &&\r\n                  sorted[i][0] !== \"0,0,0,0\"\r\n                ) {\r\n                  this.visibleImage[sorted[i][0]].onload = null;\r\n                  this.visibleImage[sorted[i][0]].src = null;\r\n                  this.visibleImage[sorted[i][0]] = null;\r\n                  delete this.visibleImage[sorted[i][0]];\r\n                  delete this.visibleImageUpdatedAt[sorted[i][0]];\r\n                } else {\r\n                  if (this.visibleImageUpdatedAt[sorted[i][0]] === undefined) {\r\n                    delete this.visibleImageUpdatedAt[sorted[i][0]];\r\n                  }\r\n                }\r\n                i++;\r\n              }\r\n            }\r\n          },\r\n          resetVisibleImages: () => {\r\n            for (let f in this.visibleImage) {\r\n              if (f !== \"0,0,0,0\") {\r\n                this.visibleImage[f].onload = null;\r\n                this.visibleImage[f].src = null;\r\n                this.visibleImage[f] = null;\r\n                delete this.visibleImage[f];\r\n                delete this.visibleImageUpdatedAt[f];\r\n              }\r\n            }\r\n            // this.visibleImage = [];\r\n          },\r\n          getVisibleImages: () => {\r\n            return this.visibleImage;\r\n          },\r\n          getVisibleImage: (tileId) => {\r\n            let img = this.visibleImage[tileId];\r\n            if (img !== undefined) {\r\n              this.visibleImageUpdatedAt[tileId] = new Date().getTime();\r\n            }\r\n            return img;\r\n          },\r\n\r\n          // Colored Images\r\n          setColoredImages: (a) => {\r\n            this.coloredImages = a;\r\n          },\r\n          pushColoredImages: (a, tileId) => {\r\n            this.coloredImages[tileId] = a;\r\n            this.coloredImagesUpdatedAt[tileId] = new Date().getTime();\r\n\r\n            // 275 imgs ~ 1GB RAM\r\n            if (Object.keys(this.coloredImages).length > 150) {\r\n              let sorted = [];\r\n              for (let tileId in this.coloredImagesUpdatedAt) {\r\n                sorted.push([tileId, this.coloredImagesUpdatedAt[tileId]]);\r\n              }\r\n\r\n              sorted.sort(function (a, b) {\r\n                return a[1] - b[1];\r\n              });\r\n\r\n              let i = 0;\r\n              while (\r\n                Object.keys(this.coloredImages).length > 125 &&\r\n                i < sorted.length\r\n              ) {\r\n                if (\r\n                  sorted &&\r\n                  sorted[i] &&\r\n                  this.coloredImages[sorted[i][0]] &&\r\n                  this.coloredImagesUpdatedAt[sorted[i][0]] &&\r\n                  sorted[i][0] !== \"0,0,0,0\"\r\n                ) {\r\n                  this.coloredImages[sorted[i][0]].onload = null;\r\n                  this.coloredImages[sorted[i][0]].src = null;\r\n                  this.coloredImages[sorted[i][0]] = null;\r\n                  delete this.coloredImages[sorted[i][0]];\r\n                  delete this.coloredImagesUpdatedAt[sorted[i][0]];\r\n                } else {\r\n                  if (this.coloredImagesUpdatedAt[sorted[i][0]] === undefined) {\r\n                    delete this.coloredImagesUpdatedAt[sorted[i][0]];\r\n                  }\r\n                }\r\n                i++;\r\n              }\r\n            }\r\n          },\r\n          resetColoredImages: () => {\r\n            for (let f in this.coloredImages) {\r\n              if (this.coloredImages[f] && f !== \"0,0,0,0\") {\r\n                this.coloredImages[f].onload = null;\r\n                this.coloredImages[f].src = null;\r\n                this.coloredImages[f] = null;\r\n                delete this.coloredImages[f];\r\n                delete this.coloredImagesUpdatedAt[f];\r\n              }\r\n            }\r\n          },\r\n          getColoredImages: () => {\r\n            return this.coloredImages;\r\n          },\r\n          getColoredImage: (tileId) => {\r\n            let img = this.coloredImages[tileId];\r\n            if (img !== undefined) {\r\n              this.coloredImagesUpdatedAt[tileId] = new Date().getTime();\r\n            }\r\n            return img;\r\n          },\r\n\r\n          setImgWidth: (a) => {\r\n            this.imgWidth = a;\r\n          },\r\n          getImgWidth: () => {\r\n            return this.imgWidth;\r\n          },\r\n\r\n          setImgHeight: (a) => {\r\n            this.imgHeight = a;\r\n          },\r\n          getImgHeight: () => {\r\n            return this.imgHeight;\r\n          },\r\n\r\n          setPageIndex: (a) => {\r\n            this.pageIndex = a;\r\n          },\r\n          getPageIndex: () => {\r\n            return this.pageIndex;\r\n          },\r\n\r\n          setHistogramConfig: (a) => {\r\n            this.histogramConfig = a;\r\n          },\r\n          getHistogramConfig: () => {\r\n            return this.histogramConfig;\r\n          },\r\n\r\n          setSelectedLayerColor: (a) => {\r\n            this.selectedLayerColor = a;\r\n          },\r\n          getSelectedLayerColor: () => {\r\n            return this.selectedLayerColor;\r\n          },\r\n\r\n          setSelectedLayerIndex: (a) => {\r\n            this.selectedLayerIndex = a;\r\n          },\r\n          getSelectedLayerIndex: () => {\r\n            return this.selectedLayerIndex;\r\n          },\r\n\r\n          addAnnotationCount: (x) => {\r\n            this.annotationCount = this.annotationCount + x;\r\n          },\r\n          setAnnotationCount: (x) => {\r\n            return (this.annotationCount = x);\r\n          },\r\n          getAnnotationCount: () => {\r\n            return this.annotationCount;\r\n          },\r\n\r\n          setFirstIteration: (x) => {\r\n            this.firstIteration = x;\r\n          },\r\n          getFirstIteration: () => {\r\n            return this.firstIteration;\r\n          },\r\n\r\n          pushAccPoint: (x) => {\r\n            let point = {\r\n              x: 30 * this.pointCount,\r\n              y: x,\r\n            };\r\n            this.accPoints.push(point);\r\n            this.pointCount = this.pointCount + 1;\r\n          },\r\n          getAccPoints: () => {\r\n            return this.accPoints;\r\n          },\r\n\r\n          setGalleryVisible: (a) => {\r\n            this.galleryVisible = a;\r\n          },\r\n          getGalleryVisible: () => {\r\n            return this.galleryVisible;\r\n          },\r\n\r\n          setIsMousedown: (a) => {\r\n            this.isMousedown = a;\r\n          },\r\n          getIsMousedown: () => {\r\n            return this.isMousedown;\r\n          },\r\n\r\n          setIsOnImage: (a) => {\r\n            this.isOnImage = a;\r\n          },\r\n          getIsOnImage: () => {\r\n            return this.isOnImage;\r\n          },\r\n\r\n          setIsInOtherImage: (a) => {\r\n            this.isInOtherImage = a;\r\n          },\r\n          getIsInOtherImage: () => {\r\n            return this.isInOtherImage;\r\n          },\r\n\r\n          setRoiProps: (a) => {\r\n            this.roiProps.color = a.color;\r\n            this.roiProps.isSubtype = a.isSubtype;\r\n            this.roiProps.subtypeName = a.subtypeName;\r\n          },\r\n          getRoiProps: () => {\r\n            return this.roiProps;\r\n          },\r\n\r\n          setPositionRoi: (a) => {\r\n            this.roiProps.pos = a;\r\n          },\r\n\r\n          setOnPageInput: (a) => {\r\n            this.onPageInput = a;\r\n          },\r\n          getOnPageInput: () => {\r\n            return this.onPageInput;\r\n          },\r\n\r\n          pushStrAnnoCount: (a) => {\r\n            this.strAnnoCount.push([a, 0]);\r\n          },\r\n          pushDynamicStructureAC: (a, b) => {\r\n            this.strAnnoCount.splice(b, 0, [a, 0]);\r\n          },\r\n          setStrAnnoCount: (a, b) => {\r\n            let idx = this.getIndex(a);\r\n            if (this.strAnnoCount[idx]) {\r\n              this.strAnnoCount[idx][1] = this.strAnnoCount[idx][1] + b;\r\n            }\r\n          },\r\n          setParentAnnoCount: (a, b) => {\r\n            let idx = this.getIndex(a);\r\n            if (this.strAnnoCount[idx]) {\r\n              this.strAnnoCount[idx][1] = this.strAnnoCount[idx][1] + b;\r\n            }\r\n          },\r\n          getStrAnnoCountElement: (a) => {\r\n            let idx = this.getIndex(a);\r\n            return this.strAnnoCount[idx][1];\r\n          },\r\n          getStrAnnoCount: () => {\r\n            return this.strAnnoCount;\r\n          },\r\n          setAnnoCount: (a) => {\r\n            this.strAnnoCount = a;\r\n          },\r\n          changeAnnoCount: (a, b) => {\r\n            let idx_a = this.getIndex(a);\r\n            let idx_b = this.getIndex(b);\r\n            if (this.strAnnoCount[idx_a] && this.strAnnoCount[idx_b]) {\r\n              this.strAnnoCount[idx_a][1] = this.strAnnoCount[idx_a][1] + 1;\r\n              this.strAnnoCount[idx_b][1] = this.strAnnoCount[idx_b][1] - 1;\r\n            }\r\n          },\r\n\r\n          pushSubtypesPages: (a, b) => {\r\n            let obj = {\r\n              name: a,\r\n              page: 0,\r\n              tilePage: 0,\r\n              subtypes: [],\r\n              id: b,\r\n            };\r\n            this.strSubtypesPages.push(obj);\r\n          },\r\n          pushDynamicStructureSP: (a, b) => {\r\n            let obj = {\r\n              name: a.label,\r\n              page: 0,\r\n              tilePage: 0,\r\n              subtypes: [],\r\n              id: a.id,\r\n            };\r\n            this.strSubtypesPages.splice(b, 0, obj);\r\n          },\r\n          getSubtypesPages: () => {\r\n            return this.strSubtypesPages;\r\n          },\r\n          setSubtypesPages: (a) => {\r\n            this.strSubtypesPages = a;\r\n          },\r\n          setPage: (a, b) => {\r\n            let idx = this.getIndexObj(a);\r\n            this.strSubtypesPages[idx].page = b;\r\n          },\r\n          getPage: (a) => {\r\n            let idx = this.getIndexObj(a);\r\n            if (this.strSubtypesPages[idx]) {\r\n              return this.strSubtypesPages[idx].page;\r\n            } else {\r\n              return 0;\r\n            }\r\n          },\r\n          setTilePage: (a, b) => {\r\n            let idx = this.getIndexObj(a);\r\n            this.strSubtypesPages[idx].tilePage = b;\r\n          },\r\n          getTilePage: (a) => {\r\n            let idx = this.getIndexObj(a);\r\n            return this.strSubtypesPages[idx].tilePage;\r\n          },\r\n          setSubtypes: (a, b) => {\r\n            let idx = this.getIndexObj(a);\r\n            this.strSubtypesPages[idx].subtypes = b;\r\n          },\r\n          setSingleSubtype: (a, b, c) => {\r\n            let idx = this.getIndexObj(a);\r\n            this.strSubtypesPages[idx].subtypes[c] = b;\r\n          },\r\n          getSubtypes: (a) => {\r\n            let idx = this.getIndexObj(a);\r\n            return this.strSubtypesPages[idx].subtypes;\r\n          },\r\n          resetSubtypesPages: () => {\r\n            this.resetStPg();\r\n            //this.strSubtypesPages = [];\r\n          },\r\n\r\n          setStructure: (a) => {\r\n            this.structureBefore = this.structure;\r\n            this.structure = a;\r\n          },\r\n          getStructure: () => {\r\n            return this.structure;\r\n          },\r\n          getStructureBefore: () => {\r\n            return this.structureBefore;\r\n          },\r\n\r\n          setGraphAcc: (a) => {\r\n            this.graphAcc = a;\r\n          },\r\n          pushGraphAcc: (a) => {\r\n            this.graphAcc.push(a);\r\n          },\r\n          getGraphAcc: () => {\r\n            return this.graphAcc;\r\n          },\r\n\r\n          setHistoClassificationStarted: (a) => {\r\n            this.histoClassificationStarted = a;\r\n          },\r\n          getHistoClassificationStarted: () => {\r\n            return this.histoClassificationStarted;\r\n          },\r\n\r\n          setFileId: (a) => {\r\n            this.fileId = a;\r\n          },\r\n          getFileId: () => {\r\n            return this.fileId;\r\n          },\r\n\r\n          setZLevel: (a) => {\r\n            this.zLevel = a;\r\n          },\r\n          getZLevel: () => {\r\n            return this.zLevel;\r\n          },\r\n          setTransformationMatnFactnOff: (a, fileId, fact, Off) => {\r\n            this.transformationMatrix[fileId] = a;\r\n            this.transformationFactor[fileId] = fact;\r\n            this.transformationOffset[fileId] = Off;\r\n          },\r\n          getTransformationMatrix: (fileId) => {\r\n            return this.transformationMatrix[fileId];\r\n          },\r\n          getTransformationFactor: (fileId) => {\r\n            return this.transformationFactor[fileId];\r\n          },\r\n          getTransformationOffset: (fileId) => {\r\n            return this.transformationOffset[fileId];\r\n          },\r\n          removeTransformationMatrix: (fileId) => {\r\n            delete this.transformationMatrix[fileId];\r\n            delete this.transformationFactor[fileId];\r\n            delete this.transformationOffset[fileId];\r\n          },\r\n          resetAllTransformationMatnFact: () => {\r\n            this.transformationMatrix = {};\r\n            this.transformationFactor = {};\r\n            this.transformationOffset = {};\r\n          },\r\n          getAllTransformationMatrices: () => {\r\n            return this.transformationMatrix;\r\n          },\r\n          getAllTransformationFactors: () => {\r\n            return this.transformationFactor;\r\n          },\r\n          getAllTransformationOffsets: () => {\r\n            return this.transformationOffset;\r\n          },\r\n        }}\r\n      >\r\n        {this.props.children}\r\n      </TilesContext.Provider>\r\n    );\r\n  }\r\n}\r\n\r\nTilesProvider.propTypes = {\r\n  children: PropTypes.element.isRequired,\r\n};\r\n\r\nexport default TilesContext;\r\n","function padTo2Digits(num) {\r\n  return num.toString().padStart(2, \"0\");\r\n}\r\n\r\n/**\r\n * Adjusts a UTC date to local timezone.\r\n * @param {Date} date A date object to convert.\r\n * @returns {Date} A date adjusted to the local timezone.\r\n */\r\nexport function convertUTCDateToLocalDate(date) {\r\n  var newDate = new Date(date.getTime() + date.getTimezoneOffset() * 60 * 1000);\r\n\r\n  var offset = date.getTimezoneOffset() / 60;\r\n  var hours = date.getHours();\r\n\r\n  newDate.setHours(hours - offset);\r\n\r\n  return newDate;\r\n}\r\n\r\n/**\r\n * Turn a json date into a standard Date object.\r\n * @param {object} jsonDate An date formatted as a json object.\r\n * @returns {Date} A Date object.\r\n */\r\nexport function convertDate(jsonDate) {\r\n  return new Date(jsonDate);\r\n}\r\n\r\nexport function convertDateToDayString(date) {\r\n  return [\r\n    date.getFullYear(),\r\n    padTo2Digits(date.getMonth() + 1),\r\n    padTo2Digits(date.getDate()),\r\n  ].join(\"-\");\r\n}\r\n\r\n/**\r\n * Converts a given local date to a short ISO 8601 formatted string.\r\n * @param {Date} date Date object.\r\n * @returns {String} Date as ISO 8601 formatted string.\r\n */\r\nexport function convertDateToShortIsoString(date) {\r\n  let d = new Date(date);\r\n  let isoString =\r\n    d.getFullYear() +\r\n    \"-\" +\r\n    padTo2Digits(d.getMonth() + 1) +\r\n    \"-\" +\r\n    padTo2Digits(d.getDate()) +\r\n    \"_\" +\r\n    padTo2Digits(d.getHours()) +\r\n    \"-\" +\r\n    padTo2Digits(d.getMinutes()) +\r\n    \"-\" +\r\n    padTo2Digits(d.getSeconds());\r\n  return isoString;\r\n}\r\n","//#region Type checks\r\n\r\nimport { isArray } from \"mathjs\";\r\n\r\n/**\r\n * Validate that a string follows the uuid format per RFC4122.\r\n * @param {string} inputString String to validate for uuid formatting.\r\n * @param {boolean} acceptNil Whether to accept NIL type UUID or not. Defaults to false\r\n * @returns {boolean} Whether the given string is a valid UUID.\r\n */\r\nexport function isUuid(inputString, acceptNil = false) {\r\n  if (typeof inputString !== \"string\") return false;\r\n  if (typeof acceptNil !== \"boolean\")\r\n    throw TypeError(\r\n      `acceptNil must be of type boolean, received ${typeof acceptNil}: ${acceptNil}`\r\n    );\r\n\r\n  const uuid =\r\n    /^[0-9a-f]{8}-[0-9a-f]{4}-[1-5][0-9a-f]{3}-[89ab][0-9a-f]{3}-[0-9a-f]{12}$/i;\r\n  const uuid_w_nil =\r\n    /^[0-9a-f]{8}-[0-9a-f]{4}-[0-5][0-9a-f]{3}-[089ab][0-9a-f]{3}-[0-9a-f]{12}$/i;\r\n\r\n  // Cheap length check\r\n  if (inputString.length !== 36) return false;\r\n\r\n  if (acceptNil) {\r\n    return uuid_w_nil.test(inputString);\r\n  } else {\r\n    return uuid.test(inputString);\r\n  }\r\n}\r\n\r\n/**\r\n * Check if a given string is a valid 3, 6, or 8 character hex color representation.\r\n * @param {string} inputString A string to test for valid color format.\r\n * @returns {bool} The given string is a valid hex color representation.\r\n */\r\nexport function isHexColor(inputString) {\r\n  if (typeof inputString !== \"string\") return false;\r\n  const hexColor = /^(#[\\da-f]{3}|#[\\da-f]{6}|#[\\da-f]{8})$/i;\r\n  return hexColor.test(inputString);\r\n}\r\n\r\n/**\r\n * Checks if a value is a plain object.\r\n * @param {number} input Object to test.\r\n * @returns {boolean} Whether the given value resembles an object.\r\n */\r\n\r\nexport function isObject(obj) {\r\n  return obj && typeof obj === \"object\" && !Array.isArray(obj);\r\n}\r\n\r\n/**\r\n * Checks if a value is an integer value.\r\n * @param {number} input Number to test.\r\n * @returns {boolean} Whether the given value resembles an integer.\r\n */\r\nexport function isInt(input) {\r\n  if (typeof input === \"bigint\") return true; // BigInts are always ints\r\n  if (typeof input !== \"number\") return false;\r\n\r\n  return (input | 0) === input;\r\n}\r\n//#endregion\r\n\r\n//#region Conversions\r\n/**\r\n * Rounds a floating point number to specified decimals after the comma.\r\n * @param {number} num Number to round.\r\n * @param {int} decimals Decimals after the comma to round to. Defaults to 0.\r\n * @returns {number} Input rounded to specified decimal count.\r\n */\r\nexport function roundToDecimal(num, decimals = 0) {\r\n  if (typeof num != \"number\") {\r\n    throw TypeError(\r\n      `num must be of type number, received ${typeof num}: ${num}`\r\n    );\r\n  }\r\n\r\n  if (!isInt(decimals) || decimals < 0) {\r\n    throw TypeError(\r\n      `decimals must be an integer >= 0, received ${typeof decimals}: ${decimals}`\r\n    );\r\n  }\r\n\r\n  return (\r\n    Math.round((num + Number.EPSILON) * Math.pow(10, decimals)) /\r\n    Math.pow(10, decimals)\r\n  );\r\n}\r\n\r\n/**\r\n * Convert a byte to its two character, hexadecimal uppercase representation.\r\n * @param {byte} input Byte (between 0 and 255) to convert to 2-letter hex value.\r\n * @returns {string} The input converted to a two-character hex string.\r\n */\r\nexport function byteToHex(input) {\r\n  if (!isInt(input) || input < 0 || input > 255) {\r\n    throw TypeError(\r\n      `input must be an integer >= 0, <= 255, received ${typeof input}: ${input}`\r\n    );\r\n  }\r\n  return (\"0\" + Number(input).toString(16)).slice(-2).toUpperCase();\r\n}\r\n//#endregion\r\n\r\n/**\r\n * Get the viewer defining url path from a project type in the format \"/path/\".\r\n * @param {string} projectType Name of the project type.\r\n * @returns {string} Viewer defining path for URL.\r\n */\r\nexport function viewerType(projectType) {\r\n  if (typeof projectType !== \"string\")\r\n    throw TypeError(\r\n      `projectType must be of type string, received ${typeof projectType}: ${projectType}`\r\n    );\r\n  projectType = projectType.toLowerCase();\r\n  // Spectra Viewer\r\n  if (\r\n    projectType.includes(\"esrtraining\") ||\r\n    projectType.includes(\"esrevaluation\")\r\n  ) {\r\n    return \"/esr_view/\";\r\n  }\r\n  // Proteome Viewer\r\n  else if (projectType.includes(\"proteomeanalysis\")) {\r\n    return \"/proteome_view/\";\r\n  }\r\n  // Audio Viewer\r\n  else if (projectType.includes(\"audioannotator\")) {\r\n    return \"/audio_view/\";\r\n  }\r\n  // Image Viewer\r\n  else {\r\n    return \"/view/\";\r\n  }\r\n}\r\n\r\n/**\r\n * Download a json object as a file with a given name.\r\n * @param {JSON} jsonObject The JSON object to save.\r\n * @param {string} downloadName Optional. How the file will be called once downloaded.\r\n *                              Needs not end in .json. Defaults to export.json.\r\n */\r\nexport function downloadJsonObjectAsFile(\r\n  jsonObject,\r\n  downloadName = \"export.json\"\r\n) {\r\n  if (!isObject(jsonObject))\r\n    throw TypeError(\r\n      `jsonObject must be of type object, received ${typeof jsonObject}: ${jsonObject}`\r\n    );\r\n  if (typeof downloadName !== \"string\")\r\n    throw TypeError(\r\n      `downloadName must be of type string, received ${typeof downloadName}: ${downloadName}`\r\n    );\r\n  if (downloadName.length <= 0)\r\n    throw Error(`downloadName must not be empty, received: ${downloadName}`);\r\n\r\n  let dataStr =\r\n    \"data:text/json;charset=utf-8,\" +\r\n    encodeURIComponent(JSON.stringify(jsonObject));\r\n\r\n  let dlAnchorElem = document.createElement(\"a\");\r\n  dlAnchorElem.setAttribute(\"href\", dataStr);\r\n  dlAnchorElem.setAttribute(\"download\", downloadName);\r\n  dlAnchorElem.click();\r\n  dlAnchorElem.remove();\r\n}\r\n\r\n/**\r\n * Download an array as a file with a given name.\r\n * @param {array} arrayIn The array to save.\r\n * @param {string} downloadName Optional. How the file will be called once downloaded.\r\n *                              Needs not end in .json. Defaults to export.json.\r\n */\r\nexport function downloadArrayAsFile(arrayIn, downloadName = \"export.json\") {\r\n  if (!isArray(arrayIn))\r\n    throw TypeError(\r\n      `arrayIn must be of type array, received ${typeof arrayIn}: ${arrayIn}`\r\n    );\r\n  if (typeof downloadName !== \"string\")\r\n    throw TypeError(\r\n      `downloadName must be of type string, received ${typeof downloadName}: ${downloadName}`\r\n    );\r\n  if (downloadName.length <= 0)\r\n    throw Error(`downloadName must not be empty, received: ${downloadName}`);\r\n\r\n  let dataStr =\r\n    \"data:text/json;charset=utf-8,\" +\r\n    encodeURIComponent(JSON.stringify(arrayIn));\r\n\r\n  let dlAnchorElem = document.createElement(\"a\");\r\n  dlAnchorElem.setAttribute(\"href\", dataStr);\r\n  dlAnchorElem.setAttribute(\"download\", downloadName);\r\n  dlAnchorElem.click();\r\n  dlAnchorElem.remove();\r\n}\r\n\r\n/**\r\n * Creates pop-up window to import a file via http input field.\r\n * @param {Array} acceptedFileTypes Strings of file endings allowed to import (including the dot, e.g. .json).\r\n * @returns {Promise} The files to import.\r\n */\r\nexport async function requestFileInput(acceptedFileTypes) {\r\n  if (!Array.isArray(acceptedFileTypes))\r\n    throw TypeError(\r\n      `acceptedFileTypes must be an Array, received ${typeof acceptedFileTypes}: ${acceptedFileTypes}`\r\n    );\r\n\r\n  return new Promise((resolve) => {\r\n    // Import window\r\n    const inputElem = document.createElement(\"INPUT\");\r\n    inputElem.setAttribute(\"type\", \"file\");\r\n    inputElem.setAttribute(\"onChange\", \"file\");\r\n    inputElem.setAttribute(\"accept\", acceptedFileTypes);\r\n    inputElem.onchange = (e) => resolve(e.target.files);\r\n    inputElem.click();\r\n    inputElem.remove();\r\n  });\r\n}\r\n\r\n/**\r\n * Shuffles array in place using Fisher-Yates algorithm.\r\n * @param {Array} a An array containing items to be shuffled.\r\n * @returns {Array} The shuffled array\r\n */\r\nexport function shuffle(a) {\r\n  if (!Array.isArray(a))\r\n    throw TypeError(`a must be of type Array, received ${typeof a}: ${a}`);\r\n\r\n  for (let i = a.length - 1; i > 0; i--) {\r\n    const j = Math.floor(Math.random() * (i + 1));\r\n    [a[i], a[j]] = [a[j], a[i]];\r\n  }\r\n  return a;\r\n}\r\n\r\n/**\r\n * if there were no new calls of this function for the delay time, the newest func will be triggered\r\n * @param {function} func callback function\r\n * @param {int} delay in ms\r\n * @returns\r\n */\r\nexport function debounce(fn, delay) {\r\n  let timeoutId;\r\n  return function (...args) {\r\n    if (timeoutId) {\r\n      clearTimeout(timeoutId);\r\n    }\r\n    timeoutId = setTimeout(() => {\r\n      fn(...args);\r\n    }, delay);\r\n  };\r\n}\r\n\r\n/**\r\n * Given an index and the total number of entries, return the log-scaled value.\r\n * @param {int} idx Index of all numbers to take logarithm of.\r\n * @param {int} total Total number of indicies.\r\n * @param {number} base Optional. Base of logarithm. Defaults to 10.\r\n * @returns\r\n */\r\nexport function logScale(idx, total, base = 10) {\r\n  const logmax = logBase(total + 1, base);\r\n  const exp = (logmax * idx) / total;\r\n  return Math.round(Math.pow(base, exp) - 1);\r\n}\r\n\r\n/**\r\n * Takes the logarithm of a number to a given base.\r\n * @param {number} val Value to calculate logarithm for.\r\n * @param {number} base Base to take logarithem to.\r\n * @returns {number} log_base(val)\r\n */\r\nexport function logBase(val, base) {\r\n  return Math.log(val) / Math.log(base);\r\n}\r\n\r\nfunction hexToRgba(hex) {\r\n  const regex = /^#?([a-f\\d]{2})([a-f\\d]{2})([a-f\\d]{2})([a-f\\d]{2})?$/i;\r\n  const result = regex.exec(hex);\r\n\r\n  if (!result) {\r\n    return null;\r\n  }\r\n\r\n  const [, r, g, b, a] = result;\r\n\r\n  return {\r\n    r: parseInt(r, 16),\r\n    g: parseInt(g, 16),\r\n    b: parseInt(b, 16),\r\n    a: a ? parseInt(a, 16) / 255 : 1,\r\n  };\r\n}\r\n\r\n/**\r\n * Determines if a given color is light or dark.\r\n * @param {string} color - The hex code of the color to check.\r\n * @returns {boolean} True if the color is light, false if it is dark.\r\n */\r\n\r\nexport function isColorLight(color) {\r\n  // Convert the color to RGB\r\n  const rgba = hexToRgba(color);\r\n\r\n  // If the color is light because of transparence, return true imeediately\r\n  if (rgba.a < 0.5) return true;\r\n\r\n  // Calculate the luminance using the formula for relative luminance defined in WCAG 2.0\r\n  const luminance = 0.2126 * rgba.r + 0.7152 * rgba.g + 0.0722 * rgba.b;\r\n\r\n  // Set the threshold for light colors\r\n  const threshold = 186;\r\n\r\n  // Return true if the luminance is greater than the threshold for light colors\r\n  return luminance > threshold;\r\n}\r\n","import { calcBoundingBox, simplifyRegions } from \"../utils/PolygonUtil\";\r\nimport { v4 as uuidv4 } from \"uuid\";\r\nimport * as turf from \"@turf/turf\";\r\n\r\n// Base class of a roi\r\n// Depreciated?\r\nexport class BaseROI {\r\n  constructor() {\r\n    this.strokeColor = \"green\";\r\n    this.fillColor = null;\r\n  }\r\n}\r\n\r\nexport class CommentROI {\r\n  constructor(regions, color, type, commentValue, computedValue) {\r\n    this.inverted = false;\r\n    this.fontScaleFactor = 1;\r\n    this.regions = regions;\r\n    this.color = color;\r\n    this.type = type;\r\n    this.commentValue = commentValue;\r\n    this.computedValue = computedValue;\r\n    this.updateBounds();\r\n  }\r\n\r\n  updateBounds() {\r\n    this.bounds = calcBoundingBox([this.regions]);\r\n    this.width = this.bounds.right - this.bounds.left;\r\n    this.height = this.bounds.bottom - this.bounds.top;\r\n  }\r\n\r\n  containsPoint(p) {\r\n    return !(\r\n      p.x < this.bounds.left ||\r\n      p.x > this.bounds.right ||\r\n      p.y < this.bounds.top ||\r\n      p.y > this.bounds.bottom\r\n    );\r\n  }\r\n}\r\n\r\n// polygon roi\r\nexport class RegionROI {\r\n  isObject = false;\r\n  constructor(obj) {\r\n    this.setRegions(obj.regions ? obj.regions : obj);\r\n    //this.regions = bufferSimplifyRegions(this.regions); //simplify old regions with small gap\r\n    this.uuid = uuidv4();\r\n    this.inverted = false;\r\n\r\n    this.center = {\r\n      x: this.bounds.left + (this.bounds.right - this.bounds.left) / 2,\r\n      y: this.bounds.top + (this.bounds.bottom - this.bounds.top) / 2,\r\n    };\r\n    this.borderColor = \"4px solid white\";\r\n\r\n    this.isSubtype = obj.subtype\r\n      ? obj.subtype\r\n      : obj.isSubtype\r\n      ? obj.isSubtype\r\n      : false;\r\n    this.color = obj.color1 ? obj.color1 : obj.color ? obj.color : \"#FFFFFF\";\r\n    this.subtypeName = obj.name\r\n      ? obj.name\r\n      : obj.subtypeName\r\n      ? obj.subtypeName\r\n      : \"\";\r\n    this.aiAnnotated = obj.ai\r\n      ? obj.ai\r\n      : obj.aiAnnotated\r\n      ? obj.aiAnnotated\r\n      : false;\r\n    this.isAnnotated = obj.annotated\r\n      ? obj.annotated\r\n      : obj.isAnnotated\r\n      ? obj.isAnnotated\r\n      : false;\r\n    this.isLabeled = obj.labeled\r\n      ? obj.labeled\r\n      : obj.isLabeled\r\n      ? obj.isLabeled\r\n      : false;\r\n    this.isSelObj = obj.isSel ? obj.isSel : obj.isSelObj ? obj.isSelObj : false;\r\n    this.isSaved = obj.saved ? obj.saved : obj.isSaved ? obj.isSaved : false;\r\n    this.z = obj.z ? obj.z : -1;\r\n    this.fullyLoaded = obj.fullyLoaded ? obj.fullyLoaded : false;\r\n    this.comment = obj.comment ? obj.comment : \"\";\r\n    this.tileName = obj.tileName ? obj.tileName : \"\";\r\n    this.structureId = obj.structureId ? obj.structureId : 0;\r\n    this.selected = obj.selected ? obj.selected : false;\r\n    this.selectedWithKey = obj.selectedWithKey ? obj.selectedWithKey : false;\r\n    this.frequencyClass = obj.frequencyClass ? obj.frequencyClass : -1;\r\n    this.isObject = obj.isObject ? obj.isObject : false;\r\n    if (this.regions[0].length > 5) this.isObject = false; //can not be object\r\n\r\n    this.isStartData = false;\r\n    this.aiIdx = 0;\r\n    this.galleryIndex = null;\r\n    this.firstTimeGallery = true;\r\n\r\n    this.treeItem = {\r\n      minX: this.bounds.left,\r\n      minY: this.bounds.top,\r\n      maxX: this.bounds.right,\r\n      maxY: this.bounds.bottom,\r\n      roi: this,\r\n    };\r\n  }\r\n\r\n  copy = () => {\r\n    let roiCopy = new RegionROI(this);\r\n    roiCopy.regions = JSON.parse(JSON.stringify(this.regions)); // [...this.regions];\r\n    roiCopy.uuid = this.uuid;\r\n    roiCopy.color = this.color;\r\n    roiCopy.isSubtype = this.isSubtype;\r\n    roiCopy.isAnnotated = this.isAnnotated;\r\n    roiCopy.subtypeName = this.subtypeName;\r\n    roiCopy.structureId = this.structureId;\r\n    roiCopy.isLabeled = this.isLabeled;\r\n    roiCopy.isSelObj = this.isSelObj;\r\n    roiCopy.aiAnnotated = this.aiAnnotated;\r\n    return roiCopy;\r\n  };\r\n\r\n  getPointOnPoly() {\r\n    let poly = turf.polygon(this.regions);\r\n    var pointOnPolygon = turf.centerOfMass(poly);\r\n    return {\r\n      x: pointOnPolygon.geometry.coordinates[0],\r\n      y: pointOnPolygon.geometry.coordinates[1],\r\n    };\r\n  }\r\n\r\n  /** Create turf region for coordinate set.\r\n   *\r\n   * @param {Array} regions Regions to be edited. Must have format [[[x,y], ..., [x,y]]]\r\n   */\r\n  setRegions(regions) {\r\n    try {\r\n      // Allow redundant styles of nesting\r\n      if (typeof regions[0][0] === \"number\") {\r\n        regions = [regions];\r\n      } else if (typeof regions[0][0][0] === \"number\") {\r\n        // regions = regions; -> Do nothing\r\n      } else {\r\n        regions = regions[0];\r\n      }\r\n\r\n      // use less float digits\r\n      for (let region of regions) {\r\n        for (let point of region) {\r\n          point[0] = +point[0].toFixed(2);\r\n          point[1] = +point[1].toFixed(2);\r\n        }\r\n      }\r\n\r\n      for (let region of regions) {\r\n        if (\r\n          region[0][0] !== region[region.length - 1][0] ||\r\n          region[0][1] !== region[region.length - 1][1]\r\n        ) {\r\n          region.push(region[0]);\r\n        }\r\n      }\r\n      this.bounds = calcBoundingBox(regions);\r\n      try {\r\n        let poly = turf.polygon(regions);\r\n        let converted = turf.toWgs84(poly);\r\n        this.area = turf.area(converted);\r\n      } catch (e) {\r\n        this.area = -1;\r\n      }\r\n      if (this.area < 0) {\r\n        this.area =\r\n          (this.bounds.right - this.bounds.left) *\r\n          (this.bounds.bottom - this.bounds.top);\r\n      }\r\n\r\n      this.regions = regions; // simplifyRegions(regions, 0.01);\r\n    } catch {\r\n      console.log(\"Error, regions could not be set:\", regions);\r\n    }\r\n  }\r\n\r\n  removeDuplicates(inputRegions) {\r\n    for (let regions of inputRegions) {\r\n      let resultRegions = [];\r\n      if (regions.length > 2) {\r\n        regions.push(regions[0]);\r\n        let resultRegions = [regions[0]];\r\n        for (let i = 1; i < regions.length; i++) {\r\n          let p1 = regions[i - 1];\r\n          let p2 = regions[i];\r\n          let isEqual = p1[0] === p2[0] && p1[1] === p2[1];\r\n          if (!isEqual) {\r\n            resultRegions.push(p2);\r\n          }\r\n        }\r\n      }\r\n      inputRegions = resultRegions;\r\n    }\r\n    return inputRegions;\r\n  }\r\n\r\n  getRectRegions() {\r\n    return [\r\n      [\r\n        [this.bounds.left, this.bounds.top],\r\n        [this.bounds.right, this.bounds.top],\r\n        [this.bounds.right, this.bounds.bottom],\r\n        [this.bounds.left, this.bounds.bottom],\r\n        [this.bounds.left, this.bounds.top],\r\n      ],\r\n    ];\r\n  }\r\n\r\n  getSimplifiedRectRegions() {\r\n    return [\r\n      [\r\n        [parseInt(this.bounds.left, 10), parseInt(this.bounds.top, 10)],\r\n        [parseInt(this.bounds.right, 10), parseInt(this.bounds.top, 10)],\r\n        [parseInt(this.bounds.right, 10), parseInt(this.bounds.bottom, 10)],\r\n        [parseInt(this.bounds.left, 10), parseInt(this.bounds.bottom, 10)],\r\n        [parseInt(this.bounds.left, 10), parseInt(this.bounds.top, 10)],\r\n      ],\r\n    ];\r\n  }\r\n\r\n  //return regions, so that rendering is still fast\r\n  getDynamicRegions(comp, numObjects) {\r\n    if (comp > 0.001 || numObjects < 100) {\r\n      //if big, return original\r\n      return this.regions;\r\n    }\r\n\r\n    if (comp < 0.00005) {\r\n      //if very small return rectangles (bounding box)\r\n      return this.getSimplifiedRectRegions();\r\n    } else if (typeof this.intRegions === \"undefined\") {\r\n      //else return rounded polygon\r\n      this.intRegions = this.regions.map((regions) => {\r\n        return regions.map((p) => [parseInt(p[0], 10), parseInt(p[1], 10)]);\r\n      });\r\n    }\r\n\r\n    if (comp < 0.0005) {\r\n      if (typeof this.simplifyedRegions === \"undefined\") {\r\n        this.simplifyedRegions = simplifyRegions(this.intRegions, 1);\r\n      }\r\n      return this.simplifyedRegions;\r\n    }\r\n    return this.intRegions;\r\n  }\r\n\r\n  intersects(p1, p2) {\r\n    return !(\r\n      p2.x < this.bounds.left ||\r\n      p1.x > this.bounds.right ||\r\n      p2.y < this.bounds.top ||\r\n      p1.y > this.bounds.bottom\r\n    );\r\n  }\r\n\r\n  boundsAreaCompare(p1, p2) {\r\n    let pArea = Math.abs(p2.x - p1.x) * Math.abs(p2.y - p1.y);\r\n    let b = this.bounds;\r\n    let area = Math.abs(b.right - b.left) * Math.abs(b.bottom - b.top);\r\n    return area / pArea;\r\n  }\r\n\r\n  sameBoundsWith(roi) {\r\n    return (\r\n      this.bounds.left === roi.bounds.left &&\r\n      this.bounds.right === roi.bounds.right &&\r\n      this.bounds.top === roi.bounds.top &&\r\n      this.bounds.bottom === roi.bounds.bottom\r\n    );\r\n  }\r\n}\r\n\r\n// simple recatangle roi\r\n// Depreciated?\r\nexport class RectROI extends BaseROI {\r\n  constructor(ctx, x, y, w, h, drawingMode = false) {\r\n    super();\r\n    this.x = x;\r\n    this.y = y;\r\n    this.w = w;\r\n    this.h = h;\r\n    this.ctx = ctx;\r\n    if (drawingMode) {\r\n      this.resizePoint = 3;\r\n    }\r\n  }\r\n\r\n  summary() {\r\n    return (\r\n      \"Rect (\" +\r\n      Math.round(this.x) +\r\n      \",\" +\r\n      Math.round(this.y) +\r\n      \",\" +\r\n      Math.round(this.w) +\r\n      \",\" +\r\n      Math.round(this.h) +\r\n      \")\"\r\n    );\r\n  }\r\n\r\n  handleMouseDown(p1) {\r\n    let cornerRadius = 5 / this.ctx.getTransform().a;\r\n    if (\r\n      p1.x >= this.x - cornerRadius &&\r\n      p1.x <= this.x + cornerRadius &&\r\n      p1.y >= this.y - cornerRadius &&\r\n      p1.y <= this.y + cornerRadius\r\n    ) {\r\n      this.resizePoint = 0;\r\n      return 2;\r\n    } else if (\r\n      p1.x >= this.x + this.w - cornerRadius &&\r\n      p1.x <= this.x + this.w + cornerRadius &&\r\n      p1.y >= this.y - cornerRadius &&\r\n      p1.y <= this.y + cornerRadius\r\n    ) {\r\n      this.resizePoint = 1;\r\n      return 2;\r\n    } else if (\r\n      p1.x >= this.x - cornerRadius &&\r\n      p1.x <= this.x + cornerRadius &&\r\n      p1.y >= this.y + this.h - cornerRadius &&\r\n      p1.y <= this.y + this.h + cornerRadius\r\n    ) {\r\n      this.resizePoint = 2;\r\n      return 2;\r\n    } else if (\r\n      p1.x >= this.x + this.w - cornerRadius &&\r\n      p1.x <= this.x + this.w + cornerRadius &&\r\n      p1.y >= this.y + this.h - cornerRadius &&\r\n      p1.y <= this.y + this.h + cornerRadius\r\n    ) {\r\n      this.resizePoint = 3;\r\n      return 2;\r\n    } else if (\r\n      p1.x >= this.x &&\r\n      p1.x <= this.x + this.w &&\r\n      p1.y >= this.y &&\r\n      p1.y <= this.y + this.h\r\n    ) {\r\n      this.dragStart = p1;\r\n      return 1;\r\n    }\r\n  }\r\n\r\n  handleMouseMove(p1) {\r\n    let cornerRadius = 5 / this.ctx.getTransform().a;\r\n    if (\r\n      p1.x >= this.x - cornerRadius &&\r\n      p1.x <= this.x + cornerRadius &&\r\n      p1.y >= this.y - cornerRadius &&\r\n      p1.y <= this.y + cornerRadius\r\n    ) {\r\n      this.ctx.canvas.style.cursor = \"se-resize\";\r\n      this.hovered = true;\r\n    } else if (\r\n      p1.x >= this.x + this.w - cornerRadius &&\r\n      p1.x <= this.x + this.w + cornerRadius &&\r\n      p1.y >= this.y - cornerRadius &&\r\n      p1.y <= this.y + cornerRadius\r\n    ) {\r\n      this.ctx.canvas.style.cursor = \"ne-resize\";\r\n      this.hovered = true;\r\n    } else if (\r\n      p1.x >= this.x - cornerRadius &&\r\n      p1.x <= this.x + cornerRadius &&\r\n      p1.y >= this.y + this.h - cornerRadius &&\r\n      p1.y <= this.y + this.h + cornerRadius\r\n    ) {\r\n      this.ctx.canvas.style.cursor = \"ne-resize\";\r\n      this.hovered = true;\r\n    } else if (\r\n      p1.x >= this.x + this.w - cornerRadius &&\r\n      p1.x <= this.x + this.w + cornerRadius &&\r\n      p1.y >= this.y + this.h - cornerRadius &&\r\n      p1.y <= this.y + this.h + cornerRadius\r\n    ) {\r\n      this.ctx.canvas.style.cursor = \"se-resize\";\r\n      this.hovered = true;\r\n    } else if (\r\n      p1.x >= this.x &&\r\n      p1.x <= this.x + this.w &&\r\n      p1.y >= this.y &&\r\n      p1.y <= this.y + this.h\r\n    ) {\r\n      if (this.ctx.canvas.style.cursor === \"default\") {\r\n        this.ctx.canvas.style.cursor = \"pointer\";\r\n      }\r\n      this.hovered = true;\r\n    } else {\r\n      this.hovered = false;\r\n    }\r\n  }\r\n\r\n  handleMouseUp() {\r\n    // heal rois (fix negative width and height)\r\n    if (this.w < 0) {\r\n      this.x += this.w;\r\n      this.w = -this.w;\r\n    }\r\n    if (this.h < 0) {\r\n      this.y += this.h;\r\n      this.h = -this.h;\r\n    }\r\n  }\r\n\r\n  drag(p1, vw, vh) {\r\n    // apply relative movement\r\n    this.x += p1.x - this.dragStart.x;\r\n    this.y += p1.y - this.dragStart.y;\r\n\r\n    // check if out of image bounds\r\n    this.x = Math.max(Math.min(vw - this.w, this.x), 0);\r\n    this.y = Math.max(Math.min(vh - this.h, this.y), 0);\r\n\r\n    // save cursor position\r\n    this.dragStart = p1;\r\n  }\r\n\r\n  resize(p1, vw, vh) {\r\n    // check if out of image bounds\r\n    p1.x = Math.max(Math.min(vw, p1.x), 0);\r\n    p1.y = Math.max(Math.min(vh, p1.y), 0);\r\n\r\n    if (this.resizePoint === 0) {\r\n      this.w -= p1.x - this.x;\r\n      this.x = p1.x;\r\n      this.h -= p1.y - this.y;\r\n      this.y = p1.y;\r\n\r\n      if ((this.w > 0 && this.h > 0) || (this.w < 0 && this.h < 0)) {\r\n        this.ctx.canvas.style.cursor = \"se-resize\";\r\n      } else {\r\n        this.ctx.canvas.style.cursor = \"ne-resize\";\r\n      }\r\n    } else if (this.resizePoint === 1) {\r\n      this.w += p1.x - this.w - this.x;\r\n      this.h -= p1.y - this.y;\r\n      this.y = p1.y;\r\n\r\n      if ((this.w > 0 && this.h > 0) || (this.w < 0 && this.h < 0)) {\r\n        this.ctx.canvas.style.cursor = \"ne-resize\";\r\n      } else {\r\n        this.ctx.canvas.style.cursor = \"se-resize\";\r\n      }\r\n    } else if (this.resizePoint === 2) {\r\n      this.w -= p1.x - this.x;\r\n      this.x = p1.x;\r\n      this.h += p1.y - this.h - this.y;\r\n\r\n      if ((this.w > 0 && this.h > 0) || (this.w < 0 && this.h < 0)) {\r\n        this.ctx.canvas.style.cursor = \"ne-resize\";\r\n      } else {\r\n        this.ctx.canvas.style.cursor = \"se-resize\";\r\n      }\r\n    } else if (this.resizePoint === 3) {\r\n      this.w += p1.x - this.w - this.x;\r\n      this.h += p1.y - this.h - this.y;\r\n\r\n      if ((this.w > 0 && this.h > 0) || (this.w < 0 && this.h < 0)) {\r\n        this.ctx.canvas.style.cursor = \"se-resize\";\r\n      } else {\r\n        this.ctx.canvas.style.cursor = \"ne-resize\";\r\n      }\r\n    }\r\n  }\r\n\r\n  draw() {\r\n    this.ctx.strokeStyle = this.strokeColor;\r\n\r\n    if (this.hovered) this.ctx.strokeStyle = \"yellow\";\r\n\r\n    // fixed line width\r\n    this.ctx.lineWidth = 2 / this.ctx.getTransform().a;\r\n\r\n    // custom drawing\r\n    this.ctx.beginPath();\r\n    this.ctx.rect(this.x, this.y, this.w, this.h);\r\n    this.ctx.stroke();\r\n    this.ctx.closePath();\r\n\r\n    if (this.hovered) {\r\n      this.ctx.lineWidth = 1 / this.ctx.getTransform().a;\r\n      let cornerDiameter = 10 / this.ctx.getTransform().a;\r\n      let cornerRadius = 5 / this.ctx.getTransform().a;\r\n\r\n      this.ctx.fillStyle = \"white\";\r\n      this.ctx.strokeStyle = \"black\";\r\n\r\n      // draw corner haptic\r\n      this.ctx.beginPath();\r\n      this.ctx.rect(\r\n        this.x - cornerRadius,\r\n        this.y - cornerRadius,\r\n        cornerDiameter,\r\n        cornerDiameter\r\n      );\r\n      this.ctx.rect(\r\n        this.x + this.w - cornerRadius,\r\n        this.y - cornerRadius,\r\n        cornerDiameter,\r\n        cornerDiameter\r\n      );\r\n      this.ctx.rect(\r\n        this.x - cornerRadius,\r\n        this.y + this.h - cornerRadius,\r\n        cornerDiameter,\r\n        cornerDiameter\r\n      );\r\n      this.ctx.rect(\r\n        this.x + this.w - cornerRadius,\r\n        this.y + this.h - cornerRadius,\r\n        cornerDiameter,\r\n        cornerDiameter\r\n      );\r\n      this.ctx.fill();\r\n      this.ctx.stroke();\r\n      this.ctx.closePath();\r\n    }\r\n  }\r\n}\r\n\r\nfunction getFirstValidatedIndexValue(item, index) {\r\n  if (item && item[index] && item[index].length > 0) {\r\n    return item[index][0];\r\n  } else {\r\n    return item;\r\n  }\r\n}\r\n\r\nexport function createRoisFromAnno(anno) {\r\n  return anno.geoJSON.coordinates\r\n    .filter((c) => c.length > 0)\r\n    .map((c, index) => {\r\n      const r = new RegionROI({\r\n        regions: c,\r\n        color1: getFirstValidatedIndexValue(anno.geoJSON.color1, index),\r\n        subtype: getFirstValidatedIndexValue(anno.geoJSON.subtype, index),\r\n        name: getFirstValidatedIndexValue(anno.geoJSON.name, index),\r\n        ai: getFirstValidatedIndexValue(anno.geoJSON.aiAnnotated, index),\r\n        annotated: getFirstValidatedIndexValue(anno.geoJSON.isAnnotated, index),\r\n        labeled: getFirstValidatedIndexValue(anno.geoJSON.isLabeled, index),\r\n        isSel: getFirstValidatedIndexValue(anno.geoJSON.isSelObj, index),\r\n        saved: getFirstValidatedIndexValue(anno.geoJSON.isSaved, index),\r\n        z: getFirstValidatedIndexValue(anno.geoJSON.z, index),\r\n        comment: getFirstValidatedIndexValue(anno.geoJSON.comment, index),\r\n        tileName: getFirstValidatedIndexValue(anno.geoJSON.tileName, index),\r\n        structureId: getFirstValidatedIndexValue(\r\n          anno.geoJSON.structureId,\r\n          index\r\n        ),\r\n        isObject: getFirstValidatedIndexValue(anno.geoJSON.isObject, index),\r\n        frequencyCl: getFirstValidatedIndexValue(anno.geoJSON.frequencyClass),\r\n      });\r\n      return r;\r\n    });\r\n}\r\n","import PolyBool from \"polybooljs\";\r\n\r\nimport { RegionROI } from \"./ROI\";\r\nimport * as turf from \"@turf/turf\";\r\n//import { booleanIntersects, difference, simplify } from \"@turf/turf\";\r\n// use old turf library, since new turf lib breaks GeoJSON coordinates when buffering\r\nimport { buffer } from \"turf\";\r\n\r\n//default:       0.0000000001\r\nPolyBool.epsilon(0.0000000001);\r\n\r\nexport function lineArrayBuffer(lineArray, radius, vw, vh) {\r\n  if (lineArray === undefined || lineArray.length === 0) return;\r\n  if (lineArray.length === 1) {\r\n    lineArray = [lineArray[0], lineArray[0]];\r\n  }\r\n  let feature =\r\n    lineArray.length > 1 ? turf.lineString(lineArray) : turf.point(lineArray);\r\n  let buffered = buffer(feature, radius * 110);\r\n  let viewRect = turf.bboxPolygon([0, 0, vw, vh]);\r\n  let result = null;\r\n  try {\r\n    result = turf.intersect(buffered, viewRect);\r\n  } catch {\r\n    console.log(\"pen tool error:\", buffered, viewRect);\r\n    return null;\r\n  }\r\n  return result;\r\n}\r\n\r\nexport function circleToPolygon(center, radius, numberOfSegments) {\r\n  let n = numberOfSegments ? numberOfSegments : 32;\r\n  let coordinates = [];\r\n\r\n  for (let i = 0; i < n; ++i) {\r\n    coordinates.push([\r\n      center[0] + radius * Math.cos((2 * Math.PI * i) / n),\r\n      center[1] + radius * Math.sin((2 * Math.PI * i) / n),\r\n    ]);\r\n  }\r\n\r\n  return {\r\n    regions: [coordinates],\r\n    inverted: false,\r\n  };\r\n}\r\n\r\nexport function distance(p1, p2) {\r\n  let deltaX = p1.x - p2.x;\r\n  let deltaY = p1.y - p2.y;\r\n  return Math.sqrt(deltaX * deltaX + deltaY * deltaY);\r\n}\r\n\r\nexport function pointsToCirclePolygon(p1, p2, numberOfSegments, vw, vh) {\r\n  let n = numberOfSegments ? numberOfSegments : 32;\r\n  let center = {\r\n    x: (p1.x + p2.x) / 2,\r\n    y: (p1.y + p2.y) / 2,\r\n  };\r\n  let dist = distance(p1, center);\r\n  let coordinates = [];\r\n  let x = center.x - dist;\r\n  let y = center.y - dist;\r\n  let w = 2 * dist;\r\n  let h = 2 * dist;\r\n\r\n  for (let i = 0; i < n; ++i) {\r\n    let point = [\r\n      x + w / 2 + (w / 2) * Math.cos((2 * Math.PI * i) / n),\r\n      y + h / 2 + (h / 2) * Math.sin((2 * Math.PI * i) / n),\r\n    ];\r\n    point[0] = Math.max(0, point[0]);\r\n    point[1] = Math.max(0, point[1]);\r\n    point[0] = Math.min(vw, point[0]);\r\n    point[1] = Math.min(vh, point[1]);\r\n    coordinates.push(point);\r\n  }\r\n\r\n  return {\r\n    regions: [coordinates],\r\n    inverted: false,\r\n  };\r\n}\r\n\r\nexport function rectangleToEllipyePolygon(x, y, w, h, numberOfSegments) {\r\n  let n = numberOfSegments ? numberOfSegments : 32;\r\n  let coordinates = [];\r\n\r\n  for (let i = 0; i < n; ++i) {\r\n    coordinates.push([\r\n      x + w / 2 + (w / 2) * Math.cos((2 * Math.PI * i) / n),\r\n      y + h / 2 + (h / 2) * Math.sin((2 * Math.PI * i) / n),\r\n    ]);\r\n  }\r\n\r\n  return {\r\n    regions: [coordinates],\r\n    inverted: false,\r\n  };\r\n}\r\n\r\nexport function lineToPolygon(start, stop, width) {\r\n  let coordinates = [];\r\n\r\n  let normalVector = [-(stop[1] - start[1]), stop[0] - start[0]];\r\n\r\n  let normalVectorLength = Math.sqrt(\r\n    normalVector[0] * normalVector[0] + normalVector[1] * normalVector[1]\r\n  );\r\n  normalVector[0] /= normalVectorLength;\r\n  normalVector[1] /= normalVectorLength;\r\n\r\n  coordinates.push([\r\n    start[0] + (normalVector[0] * width) / 2,\r\n    start[1] + (normalVector[1] * width) / 2,\r\n  ]);\r\n  coordinates.push([\r\n    stop[0] + (normalVector[0] * width) / 2,\r\n    stop[1] + (normalVector[1] * width) / 2,\r\n  ]);\r\n  coordinates.push([\r\n    stop[0] - (normalVector[0] * width) / 2,\r\n    stop[1] - (normalVector[1] * width) / 2,\r\n  ]);\r\n  coordinates.push([\r\n    start[0] - (normalVector[0] * width) / 2,\r\n    start[1] - (normalVector[1] * width) / 2,\r\n  ]);\r\n\r\n  return {\r\n    regions: [coordinates],\r\n    inverted: false,\r\n  };\r\n}\r\n\r\nexport function simplifyRegions(regions, tolerance) {\r\n  let poly = turf.polygon(regions);\r\n  let simplifiedPoly = regions;\r\n  try {\r\n    simplifiedPoly = turf.simplify(poly, {\r\n      tolerance: tolerance,\r\n      highQuality: false,\r\n    });\r\n  } catch (e) {\r\n    return regions;\r\n  }\r\n\r\n  return simplifiedPoly.geometry.coordinates;\r\n}\r\n\r\nexport function bufferSimplifyRegions(regions) {\r\n  let poly = turf.polygon(regions);\r\n  poly = buffer(poly, -5);\r\n  if (poly.geometry.coordinates[0].length === 0) return regions;\r\n  let simplifiedPoly = turf.simplify(poly, {\r\n    tolerance: 0.05,\r\n    highQuality: false,\r\n  });\r\n  return simplifiedPoly.geometry.coordinates;\r\n}\r\n\r\n/**\r\n * Calculates the bounding box around an object, not considering holes.\r\n * Holes are calculated individually.\r\n * Results in a rect object with top, botton, left, and right properties.\r\n * @param {Array[[float, float]]} region Coordinates as array of point arrays.\r\n * @returns {object} Rectangle object containing top, botton, left, and right properties.\r\n */\r\nexport function calcBoundingBox(region) {\r\n  if (region.length === 0) {\r\n    // region is empty\r\n    return { left: 0, top: 0, right: 0, bottom: 0 };\r\n  }\r\n  let rect = {\r\n    left: region[0][region[0].length - 1][0],\r\n    top: region[0][region[0].length - 1][1],\r\n    right: region[0][region[0].length - 1][0],\r\n    bottom: region[0][region[0].length - 1][1],\r\n  };\r\n  for (let p of region[0]) {\r\n    if (p[0] < rect.left) rect.left = p[0];\r\n    if (p[0] > rect.right) rect.right = p[0];\r\n    if (p[1] < rect.top) rect.top = p[1];\r\n    if (p[1] > rect.bottom) rect.bottom = p[1];\r\n  }\r\n  return rect;\r\n}\r\n\r\n/**\r\n * Calculates the bounding box around an object.\r\n * Results in a rect object with top, botton, left, and right properties.\r\n * @param {Array[Array[[float, float]]]} roiCoords GeoJson coordinates as array.\r\n * @returns Rectangle object containing top, botton, left, and right properties.\r\n */\r\nexport function calcBoundingBoxFullObject(roiCoords) {\r\n  // Validity checks\r\n  if (!roiCoords?.length) {\r\n    throw new Error(\r\n      \"Invalid or empty ROI supplied, cannot calculate bounding box\"\r\n    );\r\n  }\r\n\r\n  // Only consider first coordinate set, the rest contain holes.\r\n  if (!roiCoords[0]?.length) {\r\n    throw new Error(\r\n      \"Invalid or empty area supplied, cannot calculate bounding box\"\r\n    );\r\n  }\r\n  return calcBoundingBox([roiCoords[0]]);\r\n}\r\n\r\nexport function getTreeItem(regions) {\r\n  let bounds = calcBoundingBox(regions);\r\n  return {\r\n    minX: bounds.left,\r\n    minY: bounds.top,\r\n    maxX: bounds.right,\r\n    maxY: bounds.bottom,\r\n    used: false,\r\n    regions: regions[0],\r\n  };\r\n}\r\n\r\nexport function calcBoundingBoxes(layer) {\r\n  let rects = [];\r\n  for (let roi of layer.regionRois) {\r\n    let region = roi.region;\r\n    if (region[region.length - 1]) {\r\n      rects.push(calcBoundingBox(region));\r\n    }\r\n  }\r\n  return rects;\r\n}\r\n\r\nexport function intersectRect(r1, r2) {\r\n  return !(\r\n    r2.left >= r1.right ||\r\n    r2.right <= r1.left ||\r\n    r2.top >= r1.bottom ||\r\n    r2.bottom <= r1.top\r\n  );\r\n}\r\n\r\nexport function pointInsidePoly(p, polyPoints) {\r\n  let x = p.x,\r\n    y = p.y;\r\n  let intersections = 0;\r\n  let ss = \"\";\r\n  for (let i = 0, j = polyPoints.length - 1; i < polyPoints.length; j = i++) {\r\n    let xi = polyPoints[i][0],\r\n      yi = polyPoints[i][1];\r\n    let xj = polyPoints[j][0],\r\n      yj = polyPoints[j][1];\r\n    if (yj === yi && yj === y && x > Math.min(xj, xi) && x < Math.max(xj, xi)) {\r\n      // Check if point is on an horizontal polygon boundary\r\n      return true;\r\n    }\r\n\r\n    if (\r\n      y > Math.min(yj, yi) &&\r\n      y <= Math.max(yj, yi) &&\r\n      x <= Math.max(xj, xi) &&\r\n      yj !== yi\r\n    ) {\r\n      ss = ((y - yj) * (xi - xj)) / (yi - yj) + xj;\r\n      if (ss === x) {\r\n        // Check if point is on the polygon boundary (other than horizontal)\r\n        return true;\r\n      }\r\n      if (xj === xi || x <= ss) {\r\n        intersections++;\r\n      }\r\n    }\r\n  }\r\n  // If the number of edges we passed through is odd, then it’s in the polygon.\r\n  if (intersections % 2 !== 0) {\r\n    return true;\r\n  } else {\r\n    return false;\r\n  }\r\n}\r\n\r\nexport function pointInsideRegion(p, region) {\r\n  let turfPoint = turf.point([p.x, p.y]);\r\n  let turfPoly = turf.polygon([region]);\r\n  return !turf.booleanDisjoint(turfPoly, turfPoint);\r\n}\r\n\r\nexport function pointInside(p, regionRoi) {\r\n  let turfPoint = turf.point([p.x, p.y]);\r\n  let turfPoly = turf.polygon(regionRoi.regions);\r\n  return !turf.booleanDisjoint(turfPoly, turfPoint);\r\n}\r\n\r\nexport function boundsInside(b, regionRoi) {\r\n  let points = [\r\n    { x: b.left, y: b.top },\r\n    { x: b.right, y: b.top },\r\n    { x: b.right, y: b.bottom },\r\n    { x: b.left, y: b.bottom },\r\n  ];\r\n  let returnValue = true;\r\n  for (let p of points) {\r\n    if (!pointInside(p, regionRoi)) returnValue = false;\r\n  }\r\n  return returnValue;\r\n}\r\n\r\n// if one poly intersects or is inside other poly\r\nexport function hasIntersection(regionRoi1, regionRoi2) {\r\n  let poly1 = turf.polygon(regionRoi1.regions);\r\n  let poly2 = turf.polygon(regionRoi2.regions);\r\n  return !turf.booleanDisjoint(poly1, poly2);\r\n}\r\n\r\nexport function intersects(regionRoi1, regionRoi2) {\r\n  let poly1 = turf.polygon(regionRoi1.regions[0]);\r\n  let poly2 = turf.polygon(regionRoi2.regions[0]);\r\n  return turf.booleanIntersects(poly1, poly2);\r\n}\r\n\r\nexport function isInside(regionRoi1, regionRoi2) {\r\n  let poly1 = turf.polygon(regionRoi1.regions);\r\n  let poly2 = turf.polygon(regionRoi2.regions);\r\n\r\n  // Return true if poly1 is completely inside poly2\r\n  return turf.booleanWithin(poly1, poly2);\r\n}\r\n\r\nexport function filterInvalidRegions(layer) {\r\n  let result = layer.regionRois.filter(\r\n    (roi) => roi.regions[roi.regions.length - 1]\r\n  );\r\n  layer.regionRois = result;\r\n}\r\n\r\nexport function getIntersections(regionRois1, regionRois2) {\r\n  let regions1 = regionRois1.map((roi) => roi.regions);\r\n  let regions2 = regionRois2.map((roi) => roi.regions);\r\n\r\n  let poly1 = turf.multiPolygon(regions1);\r\n  let poly2 = turf.multiPolygon(regions2);\r\n  let intersection = turf.intersect(poly1, poly2);\r\n  return intersection;\r\n}\r\nfunction findIndexById(structures, id) {\r\n  return structures.findIndex((structure) => structure.id === id);\r\n}\r\nexport function findSameLayer(structures, selectedLayer) {\r\n  let defaultParentIndex = selectedLayer === 0 ? -1 : 0;\r\n  let parentLayerId = structures[selectedLayer].parentId;\r\n  while (structures[selectedLayer].classificationSubtype) {\r\n    selectedLayer = findIndexById(structures, parentLayerId);\r\n    parentLayerId = structures[selectedLayer].parentId;\r\n  }\r\n  let parentIndex = structures.findIndex(\r\n    (structure) => structure.id === structures[selectedLayer].parentId\r\n  );\r\n  return [selectedLayer, parentIndex < 0 ? defaultParentIndex : parentIndex];\r\n}\r\n\r\nexport function findSiblingRoiLayers(structures, selectedLayer, roiLayers) {\r\n  let overlapRoiLayers = [];\r\n  let parentLayerId = structures[selectedLayer].parentId;\r\n  for (let i = 1; i < structures.length; i++) {\r\n    if (\r\n      selectedLayer !== i &&\r\n      structures[i].parentId === parentLayerId &&\r\n      structures[i].visible\r\n    ) {\r\n      if (roiLayers[i].layer.regionRois.length > 0) {\r\n        overlapRoiLayers.push(roiLayers[i]);\r\n      }\r\n    }\r\n  }\r\n  return overlapRoiLayers;\r\n}\r\n\r\n/**\r\n * Check if structure is hidden when starting drawing and if so unhide it\r\n * @param {*} structures reference on this.structures needed! No copy!\r\n * @param {*} selectedLayer index of selected structure\r\n * @param {*}\r\n */\r\nexport function checkIfStructureHidden(\r\n  structures,\r\n  selectedLayer,\r\n  isSubtype,\r\n  name,\r\n  color\r\n) {\r\n  // set baseRoi to visible\r\n  structures[0].visible = true;\r\n\r\n  // if subtype get correct selectedLayer\r\n  if (isSubtype) {\r\n    selectedLayer = structures.findIndex(\r\n      (structure) => structure.label === name && structure.color === color\r\n    );\r\n  }\r\n  if (!structures[selectedLayer].visible) {\r\n    window.showWarningSnackbar(\"Unhiding drawing structure\");\r\n    structures[selectedLayer].visible = true;\r\n  }\r\n  let parentId = structures[selectedLayer].parentId;\r\n  while (parentId !== 0) {\r\n    // unhide all subtypes with same parent structure\r\n    for (let idx in structures) {\r\n      if (structures[idx].parentId === parentId) {\r\n        if (!structures[idx].visible) {\r\n          structures[idx].visible = true;\r\n        }\r\n      }\r\n    }\r\n    // unhide parent structure\r\n    for (let structure of structures) {\r\n      if (structure.id === parentId) {\r\n        if (!structure.visible) {\r\n          structure.visible = true;\r\n        }\r\n        parentId = structure.parentId;\r\n        break;\r\n      }\r\n    }\r\n  }\r\n}\r\n\r\n/**\r\n * Filter only relevant Regions from given rois\r\n * @param {*} tree search tree\r\n * @param {*} rois ROI used as filter using Bounding Box\r\n * @returns [largestROI, reducedLayerRegions]\r\n */\r\nexport function getTreeRegionsFromRois(tree, rois) {\r\n  let reducedLayerRois = [];\r\n  for (let regionRoi of rois) {\r\n    tree\r\n      .search(regionRoi.treeItem)\r\n      .filter((treeItem) => treeItem.roi.isObject === false)\r\n      .forEach((treeItem) => {\r\n        const index = reducedLayerRois.findIndex(\r\n          (roi) => roi.uuid === treeItem.roi.uuid\r\n        );\r\n        if (index === -1) {\r\n          reducedLayerRois.push(treeItem.roi);\r\n        }\r\n      });\r\n  }\r\n  return [\r\n    reducedLayerRois[0],\r\n    reducedLayerRois.map((roi) => roi.regions),\r\n    reducedLayerRois,\r\n  ];\r\n}\r\n\r\n/**\r\n * find smallest region\r\n * @param {*} p mouse position\r\n * @param {*} selectedLayer this.selectedLayer\r\n * @param {*} structures this.structures\r\n * @param {*} roiLayers this.roiLayers\r\n * @param {boolean} includeBaseROI this.includeBaseROI\r\n * @returns {[]} region polygon or false if none was found\r\n */\r\nexport function findRegion(\r\n  p,\r\n  selectedLayer,\r\n  structures,\r\n  roiLayers,\r\n  includeBaseROI\r\n) {\r\n  if (\r\n    structures[selectedLayer].visible &&\r\n    (includeBaseROI || !structures[selectedLayer].inversed)\r\n  ) {\r\n    let smallestRoi = null;\r\n    for (let roi of roiLayers[selectedLayer].layer.regionRois) {\r\n      if (pointInside(p, roi)) {\r\n        if (smallestRoi === null || roi.area < smallestRoi.area) {\r\n          smallestRoi = roi;\r\n        }\r\n      }\r\n    }\r\n    if (smallestRoi !== null) return smallestRoi;\r\n  }\r\n  return false;\r\n}\r\n\r\n/**\r\n * find clicked on ROI\r\n * @param {*} p mouse position\r\n * @param {*} selectedLayer this.selectedLayer\r\n * @param {*} structures this.structures\r\n * @param {*} roiLayers this.roiLayers\r\n * @param {boolean} includeBaseROI this.includeBaseROI\r\n * @returns {[]} region polygon or false if none was found\r\n */\r\nexport function findClickedRoi(\r\n  p,\r\n  selectedLayer,\r\n  structures,\r\n  roiLayers,\r\n  includeBaseROI\r\n) {\r\n  if (\r\n    structures[selectedLayer].visible &&\r\n    (includeBaseROI || !structures[selectedLayer].inversed)\r\n  ) {\r\n    let overlapTreeItems = roiLayers[selectedLayer].tree.search({\r\n      minX: parseInt(p.x, 10),\r\n      minY: parseInt(p.y, 10),\r\n      maxX: parseInt(p.x, 10),\r\n      maxY: parseInt(p.y, 10),\r\n    });\r\n    for (let treeItem of overlapTreeItems) {\r\n      if (pointInside(p, treeItem.roi)) {\r\n        return treeItem.roi;\r\n      }\r\n    }\r\n  }\r\n  return false;\r\n}\r\n\r\n/** Find all ROIs of a layer present at a certain location.\r\n *\r\n * @param {Object} p (Mouse) position {x: , y: }\r\n * @param {Int} selectedLayer The id of the selected layer.\r\n * @param {Array} structures Structures of the project.\r\n * @param {Array} roiLayers The layers containing all ROIs.\r\n * @param {Bool} includeBaseROI Whether or not to include the Base ROI.\r\n * @returns {Object} The ROI object found.\r\n * @returns {Bool} If no ROI is found, returns false.\r\n */\r\nexport function findClickedBounds(\r\n  p,\r\n  selectedLayer,\r\n  structures,\r\n  roiLayers,\r\n  includeBaseROI\r\n) {\r\n  if (\r\n    structures[selectedLayer].visible &&\r\n    (includeBaseROI || !structures[selectedLayer].inversed)\r\n  ) {\r\n    let overlapTreeItems = roiLayers[selectedLayer].tree.search({\r\n      minX: parseInt(p.x, 10),\r\n      minY: parseInt(p.y, 10),\r\n      maxX: parseInt(p.x, 10),\r\n      maxY: parseInt(p.y, 10),\r\n    });\r\n    for (let treeItem of overlapTreeItems) {\r\n      return treeItem.roi;\r\n    }\r\n  }\r\n  return false;\r\n}\r\n\r\n/**\r\n * Check if layer.regionRoi corresponse to Roi in overlapRegionRoi\r\n * @param {*} overlapRegionRois Regions that are overlapping with draw region\r\n * @param {ROI} checkRegion ROI of object.layer to be checked if the same as overlapRegionRois\r\n * @returns {boolean} true if is Hole, false if is outside\r\n */\r\nexport function isInRegionRois(overlapRegionRois, checkRegion) {\r\n  let inRegionRois = false;\r\n\r\n  for (let region of overlapRegionRois.regions) {\r\n    if (\r\n      region.find(\r\n        (point) =>\r\n          point[0] === checkRegion.regions[0][0] &&\r\n          point[1] === checkRegion.regions[0][1]\r\n      )\r\n    ) {\r\n      if (\r\n        region.find(\r\n          (point) =>\r\n            point[0] === checkRegion.regions[1][0] &&\r\n            point[1] === checkRegion.regions[1][1]\r\n        )\r\n      ) {\r\n        inRegionRois = true;\r\n        return inRegionRois;\r\n      }\r\n    }\r\n  }\r\n\r\n  return inRegionRois;\r\n}\r\n\r\n/**\r\n * generate overlapRegionRois based on GeoJson logic without the region (incl holes) that was clicked on\r\n * @param {*} reducedLayerRegionsGeoJson geoJson polygon/multipolygon\r\n * @param {*} clickedOnRegion (opt.) regions of clicked on ROI\r\n * @returns [overlapPolygon, clickedOnPolygon]\r\n */\r\nexport function generateOverlapRegionRois(\r\n  reducedLayerRegionsGeoJson,\r\n  clickedOnRegion\r\n) {\r\n  let overlapPolygon = {\r\n    inverted: false,\r\n    regions: [],\r\n  };\r\n  let clickedOnPolygon = {\r\n    inverted: false,\r\n    regions: [],\r\n  };\r\n\r\n  if (reducedLayerRegionsGeoJson.coordinates.length > 0) {\r\n    if (reducedLayerRegionsGeoJson[\"type\"] === \"Polygon\") {\r\n      let clickIsOnPolygon = false;\r\n      if (clickedOnRegion) {\r\n        if (\r\n          reducedLayerRegionsGeoJson[\"coordinates\"][0].find(\r\n            (point) =>\r\n              point[0] === clickedOnRegion[0][0] &&\r\n              point[1] === clickedOnRegion[0][1]\r\n          )\r\n        ) {\r\n          if (\r\n            reducedLayerRegionsGeoJson[\"coordinates\"][0].find(\r\n              (point) =>\r\n                point[0] === clickedOnRegion[1][0] &&\r\n                point[1] === clickedOnRegion[1][1]\r\n            )\r\n          ) {\r\n            clickIsOnPolygon = true;\r\n          }\r\n        }\r\n      }\r\n      let tmpPoly = {\r\n        inverted: false,\r\n        regions: reducedLayerRegionsGeoJson[\"coordinates\"],\r\n      };\r\n      if (clickIsOnPolygon) {\r\n        clickedOnPolygon = tmpPoly;\r\n      } else {\r\n        overlapPolygon = tmpPoly;\r\n      }\r\n    } else {\r\n      for (let polygon of reducedLayerRegionsGeoJson[\"coordinates\"]) {\r\n        let clickIsOnPolygon = false;\r\n        if (clickedOnRegion) {\r\n          if (\r\n            polygon[0].find(\r\n              (point) =>\r\n                point[0] === clickedOnRegion[0][0] &&\r\n                point[1] === clickedOnRegion[0][1]\r\n            )\r\n          ) {\r\n            if (\r\n              polygon[0].find(\r\n                (point) =>\r\n                  point[0] === clickedOnRegion[1][0] &&\r\n                  point[1] === clickedOnRegion[1][1]\r\n              )\r\n            ) {\r\n              clickIsOnPolygon = true;\r\n            }\r\n          }\r\n        }\r\n        if (clickIsOnPolygon) {\r\n          clickedOnPolygon.regions = [...clickedOnPolygon.regions, ...polygon];\r\n        } else {\r\n          overlapPolygon.regions = [...overlapPolygon.regions, ...polygon];\r\n        }\r\n      }\r\n    }\r\n  }\r\n  return [overlapPolygon, clickedOnPolygon];\r\n}\r\n\r\n/**\r\n * generate regions that intersect with drawRegion based on GeoJson logic\r\n * @param {{ type: String, coordinates: any }} reducedLayerRegionsGeoJson geoJson polygon/multipolygon\r\n * @param {[]} drawRegion region others have to intersect with\r\n * @returns overlapRegionRois\r\n */\r\nexport function getIntersectingRegions(reducedLayerRegionsGeoJson, drawRegion) {\r\n  let poly = [];\r\n  if (drawRegion.length === 1) drawRegion = drawRegion[0];\r\n  let poly1 = turf.polygon([drawRegion]);\r\n\r\n  if (reducedLayerRegionsGeoJson[\"type\"] === \"Polygon\") {\r\n    if (reducedLayerRegionsGeoJson[\"coordinates\"].length > 0) {\r\n      let poly2 = turf.polygon(reducedLayerRegionsGeoJson.coordinates[0]);\r\n\r\n      if (turf.booleanIntersects(poly1, poly2)) {\r\n        poly.push({\r\n          regions: reducedLayerRegionsGeoJson.coordinates\r\n            ? reducedLayerRegionsGeoJson.coordinates\r\n            : [],\r\n          inverted: false,\r\n        });\r\n      }\r\n    } else {\r\n      poly.push({\r\n        regions: reducedLayerRegionsGeoJson.coordinates\r\n          ? reducedLayerRegionsGeoJson.coordinates\r\n          : [],\r\n        inverted: false,\r\n      });\r\n    }\r\n  } else {\r\n    for (let regions of reducedLayerRegionsGeoJson.coordinates) {\r\n      let poly2 = {\r\n        type: \"Feature\",\r\n        properties: {},\r\n        geometry: {\r\n          type: \"Polygon\",\r\n          coordinates: regions[0],\r\n        },\r\n      };\r\n      if (turf.booleanIntersects(poly1, poly2)) {\r\n        poly.push({\r\n          regions: regions,\r\n          inverted: false,\r\n        });\r\n      }\r\n    }\r\n  }\r\n  return poly;\r\n}\r\n\r\n/**\r\n * before further analysis remove holes from drawRegion\r\n * -> uses buffer of 1\r\n * @param {*} drawRegion in GeoJson format\r\n * @returns drawRegion without holes\r\n */\r\nexport function getExterior(drawRegion) {\r\n  // custom index filter to get duplicated points\r\n  function getIndexOf(a, arr) {\r\n    for (let i = 0; i < arr.length; i++) {\r\n      let el = arr[i];\r\n      if (el[0] === a[0] && el[1] === a[1]) return i;\r\n    }\r\n    return -1;\r\n  }\r\n\r\n  try {\r\n    drawRegion.regions[0] = drawRegion.regions[0].filter(\r\n      (a, i, arr) => getIndexOf(a, arr) === i\r\n    );\r\n    let drawRegionGeoJson = PolyBool.polygonToGeoJSON(drawRegion);\r\n\r\n    if (drawRegionGeoJson.coordinates.length !== 0) {\r\n      drawRegionGeoJson = buffer(drawRegionGeoJson, 1).geometry;\r\n      let drawRegionWithoutHoles = {\r\n        inverted: false,\r\n        regions: [],\r\n      };\r\n      if (drawRegionGeoJson.type === \"Polygon\") {\r\n        drawRegionWithoutHoles.regions.push(drawRegionGeoJson.coordinates[0]);\r\n      } else {\r\n        for (let regions of drawRegionGeoJson.coordinates) {\r\n          drawRegionWithoutHoles.regions.push(regions[0]);\r\n        }\r\n      }\r\n      drawRegion = drawRegionWithoutHoles;\r\n    }\r\n  } catch {\r\n    console.log(\"Error in getExterior, returning empty regions instead!\");\r\n    drawRegion = {\r\n      regions: [],\r\n      inverted: false,\r\n    };\r\n  }\r\n\r\n  return drawRegion;\r\n}\r\n\r\n// /**\r\n//  * Get all regions and Rois that overlap with drawing region and the largest included area based on the provided rTree\r\n//  * @param {*} tree rTree with all relevant ROIs\r\n//  * @param {*} drawRegionRois drawn region that should be used as baseline\r\n//  * @returns [reducedLayerRegions, reducedLayerRegionRois] which contain all regions/ROIs that are relevant for the drawn region\r\n//  */\r\n// function getOverlapRegionsAndRois(tree, drawRegionRois) {\r\n//   let reducedLayerRegions = [];\r\n//   let reducedLayerRegionRois = [];\r\n//   if (tree) {\r\n//     // get all Regions that overlap with drawRegion\r\n//     let tmpResult = getTreeRegionsFromRois(tree, drawRegionRois);\r\n//     reducedLayerRegions = tmpResult[1];\r\n//     reducedLayerRegionRois = tmpResult[2];\r\n//   }\r\n//   return [reducedLayerRegions, reducedLayerRegionRois];\r\n// }\r\n\r\nfunction getTreeItemsFromRois(tree, regionRois) {\r\n  let reducedLayerRegionRois = [];\r\n  if (tree) {\r\n    for (let roi of regionRois) {\r\n      tree.search(roi.treeItem).forEach((treeItem) => {\r\n        let idx = reducedLayerRegionRois.findIndex(\r\n          (r) => r.uuid === treeItem.roi.uuid\r\n        );\r\n        if (idx < 0) reducedLayerRegionRois.push(treeItem.roi);\r\n      });\r\n    }\r\n  }\r\n  return reducedLayerRegionRois;\r\n}\r\n\r\n/**\r\n * Generates difference Regions and Informations to account for subtypes when deleting (using turf)\r\n * @param {*} overlapItems overlapping tree items\r\n * @param {*} transformResult turf.difference() result\r\n * @returns differenceRegionsInfo - corresponding Info\r\n */\r\nfunction differenceRegionsAndInfo(overlapItems, transformResult) {\r\n  let differenceRegionsInfo = [];\r\n\r\n  transformResult = transformResult ? transformResult : turf.multiPolygon([]);\r\n  if (transformResult.geometry.type === \"Polygon\") {\r\n    transformResult = turf.multiPolygon([transformResult.geometry.coordinates]);\r\n  }\r\n\r\n  for (let poly of transformResult.geometry.coordinates) {\r\n    differenceRegionsInfo.push({\r\n      name: null,\r\n      color: null,\r\n      subtype: null,\r\n      structureId: null,\r\n    });\r\n    let segDiff = turf.polygon(poly);\r\n    for (let idxRoi in overlapItems) {\r\n      let segGeoJSON = turf.polygon(overlapItems[idxRoi].regions);\r\n      if (!turf.booleanDisjoint(segDiff, segGeoJSON)) {\r\n        let idxRegionsInfo = differenceRegionsInfo.length - 1;\r\n        differenceRegionsInfo[idxRegionsInfo].name =\r\n          overlapItems[idxRoi].subtypeName;\r\n        differenceRegionsInfo[idxRegionsInfo].color =\r\n          overlapItems[idxRoi].color;\r\n        differenceRegionsInfo[idxRegionsInfo].subtype =\r\n          overlapItems[idxRoi].isSubtype;\r\n        differenceRegionsInfo[idxRegionsInfo].structureId =\r\n          overlapItems[idxRoi].structureId;\r\n        break;\r\n      }\r\n    }\r\n  }\r\n  return differenceRegionsInfo;\r\n}\r\n\r\n// /**\r\n//  * custom GeoJSON converter to throw that sees them all as outer Polygons\r\n//  * TODO: Add efficient way to detect wholes\r\n//  * @param {*} reducedLayerRegions\r\n//  * @returns\r\n//  */\r\n// function customGeoJsonConverter(reducedLayerRegions) {\r\n//   let resultGeoJSON = {\r\n//     coordinates: [],\r\n//   };\r\n//   if (reducedLayerRegions.length === 0) {\r\n//     resultGeoJSON.type = \"Polygon\";\r\n//   } else if (reducedLayerRegions.length === 1) {\r\n//     resultGeoJSON.type = \"Polygon\";\r\n//     resultGeoJSON.coordinates = reducedLayerRegions;\r\n//   } else {\r\n//     resultGeoJSON.type = \"MultiPolygon\";\r\n//     for (let reducedLayerRegion of reducedLayerRegions) {\r\n//       resultGeoJSON.coordinates.push([reducedLayerRegion]);\r\n//     }\r\n//   }\r\n//   return resultGeoJSON;\r\n// }\r\n\r\n// function checkIfExists(value) {\r\n//   return value ? value : null;\r\n// }\r\n\r\n// /**\r\n//  * checks object for needed parameters and if not exists, set to null\r\n//  * @param {*} object original object to check\r\n//  * @returns object with all entries\r\n//  */\r\n// function checkObject(object) {\r\n//   object = {\r\n//     layer: checkIfExists(object.layer),\r\n//     drawRegion: checkIfExists(object.drawRegion),\r\n//     clear: checkIfExists(object.clear),\r\n//     color: checkIfExists(object.color),\r\n//     subtype: checkIfExists(object.subtype),\r\n//     name: checkIfExists(object.name),\r\n//     tree: checkIfExists(object.tree),\r\n//     positionInRoiLayer: checkIfExists(object.positionInRoiLayer),\r\n//     fullyLoaded: checkIfExists(object.fullyLoaded),\r\n//     overlap: checkIfExists(object.overlap),\r\n//     parentLayer: checkIfExists(object.parentLayer),\r\n//     structureId: checkIfExists(object.structureId),\r\n//     overlapRoiLayers: checkIfExists(object.overlapRoiLayers),\r\n//     clickedOnRegion: checkIfExists(object.clickedOnRegion),\r\n//     convert: checkIfExists(object.convert),\r\n//   };\r\n//   return object;\r\n// }\r\n\r\n/** Updates the objects currently being drawn.\r\n *\r\n * @param {Object} layer Structure being edited {regionRois: [], inverted: Bool}\r\n * @param {Object} drawRegion Objects inside the structure: {regions: [[x:, y: ], ...], inverted: Bool}\r\n * @param {Bool} clear Delete mode?\r\n * @param {String} color Color of the currently selected structure (#012DEF)\r\n * @param {Bool} subtype Whether or not the annotation is a subtype.\r\n * @param {String} name Name of the structure.\r\n */\r\nexport function updateDrawLayer(\r\n  layer,\r\n  drawRegion,\r\n  clear,\r\n  color,\r\n  subtype,\r\n  name,\r\n  bufferSize\r\n) {\r\n  // drawRegionRois -> region that was clicked on\r\n  let drawRegionRois = drawRegion.regions.map((regions) => {\r\n    return new RegionROI({\r\n      regions: regions,\r\n      color1: color,\r\n      subtype: subtype,\r\n      name: name,\r\n    });\r\n  });\r\n  let multiLayerRegions = layer.regionRois.map((roi) => roi.regions);\r\n  let multiDrawRegions = drawRegionRois.map((roi) => roi.regions);\r\n  let transformResult = turf.union(\r\n    turf.multiPolygon(multiDrawRegions),\r\n    turf.multiPolygon(multiLayerRegions)\r\n  );\r\n  if (bufferSize && bufferSize !== 0) {\r\n    transformResult = buffer(transformResult, bufferSize * 100);\r\n  }\r\n\r\n  layer.regionRois = [];\r\n  let coordArray = [];\r\n  if (transformResult === null) {\r\n    coordArray = [];\r\n  } else if (transformResult.geometry.type === \"Polygon\") {\r\n    coordArray = [transformResult.geometry.coordinates];\r\n  } else {\r\n    coordArray = transformResult.geometry.coordinates;\r\n  }\r\n  for (let coordinates of coordArray) {\r\n    let roiToAdd = createRegionRoi(\r\n      coordinates,\r\n      color,\r\n      subtype,\r\n      name,\r\n      null,\r\n      null\r\n    );\r\n    if (roiToAdd.area > 2) layer.regionRois.push(roiToAdd);\r\n  }\r\n}\r\n\r\n/** Creates a ROI object.\r\n *\r\n * @param {Array} regions Array of coordninate arrays: [[x,y], ..., [x,y]]\r\n * @param {String} color #012DEF\r\n * @param {Bool} subtype Is the ROI a subtype or not?\r\n * @param {String} name Name of the object structure, e.g. \"Base ROI\"\r\n * @param {Bool} fullyLoaded\r\n * @param {Int} structureId Id of the objects structure.\r\n * @param {Bool} isObject Is the ROI an object for object detection? Defaults to false.\r\n * @returns\r\n */\r\nexport function createRegionRoi(\r\n  regions,\r\n  color,\r\n  isSubtype,\r\n  name,\r\n  fullyLoaded,\r\n  structureId,\r\n  isObject = false\r\n) {\r\n  return new RegionROI({\r\n    regions: regions,\r\n    color1: color,\r\n    subtype: isSubtype,\r\n    name: name,\r\n    fullyLoaded: fullyLoaded,\r\n    structureId: structureId,\r\n    isObject: isObject,\r\n  });\r\n}\r\n\r\nexport function turfPolyToRegionRois(\r\n  poly,\r\n  color,\r\n  isSubtype,\r\n  name,\r\n  fullyLoaded,\r\n  structureId\r\n) {\r\n  let coordArray = [];\r\n  if (poly === null) {\r\n    coordArray = [];\r\n  } else if (poly.geometry.type === \"Polygon\") {\r\n    coordArray = [poly.geometry.coordinates];\r\n  } else {\r\n    coordArray = poly.geometry.coordinates;\r\n  }\r\n  return coordArray.map((coordinates) => {\r\n    return createRegionRoi(\r\n      coordinates,\r\n      color,\r\n      isSubtype,\r\n      name,\r\n      fullyLoaded,\r\n      structureId\r\n    );\r\n  });\r\n}\r\n\r\n/**\r\n * Checks if a ROI is inside its parentlayer,\r\n * calculates resulting polygon for overlapping polygons.\r\n *\r\n * @param {Object} layer Structure being edited {regionRois: [], inverted: Bool}\r\n * @param {Object} drawRegion Objects inside the structure: {regions: [RegionROI, ...], inverted: Bool}\r\n * @param {Bool} clear Delete mode?\r\n * @param {String} color Color of the currently selected structure (#012DEF)\r\n * @param {Bool} isSubtype Whether or not the annotation is a subtype.\r\n * @param {String} name Name of the structure.\r\n * @param {rTree} tree R Tree containing structure information of the selected layer\r\n * @param {Bool} positionInRoiLayer Is the object inside a ROI Layer?\r\n * @param {Bool} fullyLoaded\r\n * @param {Bool} overlap\r\n * @param {Object} parentLayer The parent structure as object. Prevents annotations outside of paranet layer.\r\n * @param {Int} structureId The id of the structure.\r\n * @param {Array} overlapRoiLayers List of all ROI Layers, 1 for each struct, substruct and subtypes of the same parent. Depends on the checkboxes set in remove overlaps.\r\n * @param {Object} clickedOnRoi The ROI the user clicked on to begin with, if any.\r\n * @param {Bool} isObject Is this an object detection annotation? Defaults to false.\r\n * @param {Bool} convert (Not used). Whether or not to convert. Defaults to false.\r\n */\r\nexport function updateLayer(\r\n  layer,\r\n  drawRegion,\r\n  clear,\r\n  color,\r\n  isSubtype,\r\n  name,\r\n  tree,\r\n  positionInRoiLayer,\r\n  fullyLoaded,\r\n  overlap,\r\n  parentLayer,\r\n  structureId,\r\n  overlapRoiLayers,\r\n  clickedOnRoi,\r\n  isObject = false\r\n) {\r\n  let historyItem = [];\r\n  let histId = structureId;\r\n  // drawRegionRois -> region that was clicked on\r\n  // Creates a Region ROI for the freshly created ROI\r\n  let drawRegionRois = [];\r\n  for (let regionRoi of drawRegion.regions) {\r\n    drawRegionRois.push(regionRoi);\r\n  }\r\n\r\n  // Extract the regions of the freshly created ROI\r\n  let multiDrawRegions = drawRegionRois.map((roi) => roi.regions);\r\n\r\n  // Filter with Base ROI and Parent Annotations\r\n  if (parentLayer && parentLayer.tree && !clear) {\r\n    let parentRegionRois = getTreeItemsFromRois(\r\n      parentLayer.tree,\r\n      drawRegionRois\r\n    );\r\n    // Extract the regions of parent regions\r\n    let multiParentRegions = parentRegionRois.map((roi) => roi.regions);\r\n\r\n    // Check if in parent region\r\n    let poly1 = turf.multiPolygon(multiDrawRegions);\r\n    poly1 = turf.simplify(poly1, {\r\n      tolerance: 0.05,\r\n      highQuality: false,\r\n    });\r\n    let poly2 = turf.multiPolygon(multiParentRegions);\r\n    let intersection = turf.intersect(poly1, poly2);\r\n    if (intersection) {\r\n      multiDrawRegions = turfPolyToRegionRois(\r\n        intersection,\r\n        color,\r\n        isSubtype,\r\n        name,\r\n        fullyLoaded,\r\n        structureId\r\n      ).map((roi) => roi.regions);\r\n    } else {\r\n      multiDrawRegions = [];\r\n      window.showWarningSnackbar(\"Can only be drawn inside parent regions.\");\r\n      return;\r\n    }\r\n  }\r\n\r\n  // Remove Overlaps, if checkbox is active\r\n  if (!clear && overlapRoiLayers && overlapRoiLayers.length > 0) {\r\n    for (let overlapRoiLayer of overlapRoiLayers) {\r\n      if (overlapRoiLayer.layer.regionRois.length > 0) {\r\n        // get all Regions that overlap with drawRegion\r\n        if (!isObject && overlapRoiLayer.tree) {\r\n          let overlapItems = [];\r\n          for (let drawRoi of drawRegionRois) {\r\n            let drawPoly = turf.polygon(drawRoi.regions);\r\n            overlapRoiLayer.tree\r\n              .search(drawRoi.treeItem)\r\n              .filter((treeItem) => treeItem.roi.isObject === isObject)\r\n              .forEach((treeItem) => {\r\n                if (clickedOnRoi && treeItem.roi.uuid === clickedOnRoi.uuid)\r\n                  return;\r\n                let poly = turf.polygon(treeItem.roi.regions);\r\n                let isIntersecting = true;\r\n                try {\r\n                  isIntersecting = !turf.booleanDisjoint(poly, drawPoly);\r\n                } catch (e) {\r\n                  console.log(\r\n                    \"intersection check failed, treeting polygon as intersecting!\"\r\n                  );\r\n                  isIntersecting = true;\r\n                }\r\n                if (isIntersecting) {\r\n                  overlapItems.push(treeItem.roi);\r\n                }\r\n              });\r\n          }\r\n\r\n          let multiLayerRegions = overlapItems.map((roi) => roi.regions);\r\n          let transformResult = null;\r\n          let poly1 = turf.multiPolygon(multiDrawRegions);\r\n          let poly2 = turf.multiPolygon(multiLayerRegions);\r\n          transformResult = turf.difference(poly1, poly2);\r\n          if (transformResult) {\r\n            // Reduce size of ROIs for good measure\r\n            transformResult = buffer(transformResult, -10);\r\n            if (transformResult.geometry.coordinates[0].length > 0) {\r\n              transformResult = turf.simplify(transformResult, {\r\n                tolerance: 0.05,\r\n                highQuality: false,\r\n              });\r\n            }\r\n          }\r\n\r\n          let coordArray = [];\r\n          if (transformResult === null) {\r\n            coordArray = [];\r\n          } else if (transformResult.geometry.type === \"Polygon\") {\r\n            coordArray = [transformResult.geometry.coordinates];\r\n          } else {\r\n            coordArray = transformResult.geometry.coordinates;\r\n          }\r\n          drawRegionRois = [];\r\n          for (let coordinates of coordArray) {\r\n            if (coordinates[0].length < 1) continue;\r\n            let roiToAdd = createRegionRoi(\r\n              coordinates,\r\n              color,\r\n              isSubtype,\r\n              name,\r\n              fullyLoaded,\r\n              structureId,\r\n              isObject\r\n            );\r\n            if (roiToAdd.area > 2) drawRegionRois.push(roiToAdd);\r\n          }\r\n          multiDrawRegions = drawRegionRois.map((roi) => roi.regions);\r\n        }\r\n      }\r\n    }\r\n  }\r\n\r\n  // Add objects to structure trees\r\n  if (tree) {\r\n    let overlapItems = [];\r\n    for (let drawRoi of drawRegionRois) {\r\n      let drawPoly = turf.polygon(drawRoi.regions);\r\n      tree\r\n        .search(drawRoi.treeItem)\r\n        .filter((treeItem) => treeItem.roi.isObject === isObject)\r\n        .forEach((treeItem) => {\r\n          // if drawPoly is subtype, filter all annotations that aren't of the same subtype\r\n          if (isSubtype && clear) {\r\n            overlapItems.push(treeItem.roi);\r\n            treeItem.roi.comment = \"\";\r\n            tree.remove(treeItem);\r\n            historyItem.push({\r\n              add: false,\r\n              id: histId,\r\n              roi: treeItem.roi.copy(),\r\n            });\r\n\r\n            return;\r\n          }\r\n          let poly = turf.polygon(treeItem.roi.regions);\r\n          let isIntersecting = true;\r\n          try {\r\n            isIntersecting = !turf.booleanDisjoint(poly, drawPoly);\r\n          } catch (e) {\r\n            console.log(\r\n              \"intersection check failed, treating polygon as intersecting!\"\r\n            );\r\n            isIntersecting = true;\r\n          }\r\n          if (isIntersecting) {\r\n            overlapItems.push(treeItem.roi);\r\n            treeItem.roi.comment = \"\";\r\n            tree.remove(treeItem);\r\n            historyItem.push({\r\n              add: false,\r\n              id: structureId,\r\n              roi: treeItem.roi.copy(),\r\n            });\r\n          }\r\n        });\r\n      //overlapItems.push(drawRoi);\r\n    }\r\n    let multiLayerRegions = overlapItems.map((roi) => roi.regions);\r\n    let transformResult = null;\r\n    let transformResultInfo = null;\r\n\r\n    // Add a polygon\r\n    if (!clear) {\r\n      if (isObject) {\r\n        // Ensure both the new and the old ROI are included.\r\n        // No transformation\r\n        multiLayerRegions.forEach((region) => {\r\n          multiDrawRegions.push(region);\r\n        });\r\n        transformResult = turf.multiPolygon(multiDrawRegions);\r\n      }\r\n      // Non-Object ROI was clicked\r\n      // Transform according to settings\r\n      else {\r\n        let poly1 = turf.multiPolygon(multiDrawRegions);\r\n        // No overlapping regions\r\n        if (multiLayerRegions.length === 0 && !overlap) {\r\n          transformResult = poly1;\r\n        }\r\n        // Overlapping regions exist\r\n        else {\r\n          let poly2 = turf.multiPolygon(multiLayerRegions);\r\n          try {\r\n            transformResult = overlap\r\n              ? turf.intersect(poly1, poly2)\r\n              : turf.union(poly1, poly2);\r\n          } catch (e) {\r\n            console.debug(\"Overlap error:\", e);\r\n            window.openErrorDialog(\r\n              \"Overlap Error!\\n Probably too many objects to compute:\\n\" + e\r\n            );\r\n          }\r\n        }\r\n      }\r\n    }\r\n    // Remove a polygon\r\n    else {\r\n      if (!isObject) {\r\n        if (overlapItems.length <= 100) {\r\n          transformResult = turf.difference(\r\n            turf.multiPolygon(multiLayerRegions),\r\n            turf.multiPolygon(multiDrawRegions)\r\n          );\r\n          transformResultInfo = differenceRegionsAndInfo(\r\n            overlapItems,\r\n            transformResult\r\n          );\r\n        } else {\r\n          window.showWarningSnackbar(\r\n            \"Too many intersections, \" +\r\n              overlapItems.length +\r\n              \" objects deleted whole!\"\r\n          );\r\n        }\r\n      }\r\n    }\r\n\r\n    // The new coordinates of the transformed object\r\n    let coordArray = [];\r\n    if (transformResult === null) {\r\n      coordArray = [];\r\n    } else if (transformResult.geometry.type === \"Polygon\") {\r\n      coordArray = [transformResult.geometry.coordinates];\r\n    } else {\r\n      coordArray = transformResult.geometry.coordinates;\r\n    }\r\n    let firstRoiToAdd = null;\r\n    for (let idx in coordArray) {\r\n      let roiToAdd = createRegionRoi(\r\n        coordArray[idx],\r\n        transformResultInfo ? transformResultInfo[idx].color : color,\r\n        transformResultInfo ? transformResultInfo[idx].subtype : isSubtype,\r\n        transformResultInfo ? transformResultInfo[idx].name : name,\r\n        fullyLoaded,\r\n        transformResultInfo\r\n          ? transformResultInfo[idx].structureId\r\n          : structureId,\r\n        isObject\r\n      );\r\n      if (roiToAdd.area > 2) {\r\n        if (idx === \"0\") {\r\n          firstRoiToAdd = roiToAdd;\r\n        }\r\n        tree.insert(roiToAdd.treeItem);\r\n        historyItem.push({ add: true, id: histId, roi: roiToAdd });\r\n      }\r\n    }\r\n    layer.regionRois = tree.all().map((treeItem) => treeItem.roi);\r\n    if (firstRoiToAdd !== null && positionInRoiLayer >= 0) {\r\n      let fromIndex = layer.regionRois.findIndex(\r\n        (item) => item.uuid === firstRoiToAdd.uuid\r\n      );\r\n      arraymove(layer.regionRois, fromIndex, positionInRoiLayer);\r\n    }\r\n  }\r\n  window.projectHistory.add(historyItem);\r\n}\r\n\r\n/**\r\n * Special findRegion function for CopyTools, since they require additional information of the layer\r\n * @param {Object} p mouse position {x:, y: }\r\n * @param {Array} roiLayers The layers containing all ROIs.\r\n * @param {Array} structures Structures of the project.\r\n * @param {Bool} includeBaseROI Whether or not to include the Base ROI.\r\n * @returns {[*, []]} Array with index of layer where region was found in and array with region in polygon form\r\n */\r\nexport function findRoi(p, roiLayers, structures, includeBaseROI) {\r\n  let resultRoi = null;\r\n  let targetLayerIndex = -1;\r\n\r\n  for (let i = 0; i < roiLayers.length; i++) {\r\n    if (\r\n      structures[i].visible &&\r\n      (includeBaseROI || !structures[i].inversed) &&\r\n      roiLayers[i].layer.regionRois.length > 0\r\n    ) {\r\n      let overlapTreeItems = roiLayers[i].tree.search({\r\n        minX: parseInt(p.x, 10),\r\n        minY: parseInt(p.y, 10),\r\n        maxX: parseInt(p.x, 10),\r\n        maxY: parseInt(p.y, 10),\r\n      });\r\n      for (let treeItem of overlapTreeItems) {\r\n        if (pointInside(p, treeItem.roi)) {\r\n          if (resultRoi) {\r\n            if (resultRoi.area > treeItem.roi.area) {\r\n              resultRoi = treeItem.roi;\r\n              targetLayerIndex = i;\r\n            }\r\n          } else {\r\n            resultRoi = treeItem.roi;\r\n            targetLayerIndex = i;\r\n          }\r\n        }\r\n      }\r\n    }\r\n  }\r\n\r\n  return [targetLayerIndex, resultRoi];\r\n}\r\n\r\nfunction arraymove(arr, fromIndex, toIndex) {\r\n  var element = arr[fromIndex];\r\n  arr.splice(fromIndex, 1);\r\n  arr.splice(toIndex, 0, element);\r\n}\r\n","// Copyright HS Analysis GmbH, 2023\r\n// Author: Valentin Haas\r\n\r\n// Description: Structure model for annotation categorization.\r\n\r\n// Keep in sync with C# and js frontend:\r\n// Source\\HSA-KIT\\Database\\Model\\Structure.cs\r\n// Source\\HSA-KIT\\ClientApp\\src\\common\\components\\Structure.jsx\r\n// Source\\HSA-KIT\\modules\\hsa\\core\\models\\structure.py\r\n\r\n// HSA imports\r\nimport {\r\n  isInt,\r\n  isHexColor,\r\n  downloadJsonObjectAsFile,\r\n  isObject,\r\n  requestFileInput,\r\n} from \"../utils/Utils\";\r\nimport { convertDateToShortIsoString } from \"../utils/Localization\";\r\n\r\n/**\r\n * Structure class used for annotation categorization.\r\n * For structure documentation see https://hsa.atlassian.net/wiki/spaces/HSAKIT/pages/16116235173917/Annotations+Data+Structure\r\n */\r\nexport default class Structure {\r\n  /**\r\n   * Maximum id used, to avoid duplicate ids.\r\n   */\r\n  static maxId = 0;\r\n  static __setMaxId = (val) => (Structure.maxId = val);\r\n\r\n  /**\r\n   * Create a Structure object with all parameters.\r\n   * @param {uint} id Unique identifier for the structure.\r\n   * @param {string} label Visible name of structure.\r\n   * @param {boolean} isStructure Distinction between class and structure. Defaults to true.\r\n   * @param {string} color Color of the structure. Defaults to #FFFFFF.\r\n   * @param {boolean} isDynamic Whether or not the user is allowed to delete/add substructures/classes to this structure. Defaults to true.\r\n   * @param {uint} parentId Parent key, should the structure be a substructure. Defaults to null.\r\n   * @param {uint} sameLevelRank Defines te order in which multiple strucutures on the same level with the same parent are displayed. Defaults to 0.\r\n   * @param {boolean} isUnfolded Whether or not the children of a structure are visible. Defaults to false.\r\n   * @param {boolean} annotationsAreVisible Whether or not the annotations of the structure are shown. Defaults to true.\r\n   * @param {boolean} hasChildren Whether or not a structure has children. Defaults to false.\r\n   * @param {uint} nestingDepth How deep a structure is nested inside other structures. Defaults to 0.\r\n   * @param {ulong} totalObjectCount Annotation count over all contained r-Trees. Defaults to 0.\r\n   * @param {boolean} canBeChosen Optional. Whether or not the structure can be chosen. Defaults to true.\r\n   * @param {boolean} isChosen Optional. Whether or not the structure is chosen. Defaults to false.\r\n   * @param {List[object]} toolSettings Optional. Which tools are activated for this structure and their parameters. Defaults to null.\r\n   * @param {List[object]} optionalParams Optional. Project-specific optional parameters not covered by the attributes above. Defaults to null.\r\n   */\r\n  constructor(\r\n    id,\r\n    label,\r\n    isStructure = true,\r\n    color = \"#FFFFFF\",\r\n    isDynamic = true,\r\n    parentId = null,\r\n    sameLevelRank = 0,\r\n    isUnfolded = false,\r\n    annotationsAreVisible = true,\r\n    hasChildren = false,\r\n    nestingDepth = 0,\r\n    totalObjectCount = 0,\r\n    canBeChosen = true,\r\n    isChosen = false,\r\n    toolSettings = null,\r\n    optionalParams = null\r\n  ) {\r\n    // Input validation\r\n    if (!isInt(id) || id <= 0)\r\n      throw TypeError(\r\n        `id must be of type integer > 0, received ${typeof id}: ${id}`\r\n      );\r\n    if (typeof label !== \"string\")\r\n      throw TypeError(\r\n        `label must be of type string, received ${typeof label}: ${label}`\r\n      );\r\n    if (typeof isStructure !== \"boolean\")\r\n      throw TypeError(\r\n        `isStructure must be of type boolean, received ${typeof isStructure}: ${isStructure}`\r\n      );\r\n    if (!isHexColor(color) && label !== \"Base ROI\")\r\n      throw TypeError(\r\n        `color must be a valid hexColor, received ${typeof color}: ${color}`\r\n      );\r\n    if (typeof isDynamic !== \"boolean\")\r\n      throw TypeError(\r\n        `isDynamic must be of type boolean, received ${typeof isDynamic}: ${isDynamic}`\r\n      );\r\n    if (parentId !== null && (!isInt(parentId) || parentId <= 0))\r\n      throw TypeError(\r\n        `parentId must be of type integer >= 0, received ${typeof parentId}: ${parentId}`\r\n      );\r\n    if (!isInt(sameLevelRank) || sameLevelRank < 0) {\r\n      throw TypeError(\r\n        `sameLevelRank must be of type integer >= 0, received ${typeof sameLevelRank}: ${sameLevelRank}`\r\n      );\r\n    }\r\n    if (typeof isUnfolded !== \"boolean\")\r\n      throw TypeError(\r\n        `isUnfolded must be of type boolean, received ${typeof isUnfolded}: ${isUnfolded}`\r\n      );\r\n    if (typeof annotationsAreVisible !== \"boolean\")\r\n      throw TypeError(\r\n        `annotationsAreVisible must be of type boolean, received ${typeof annotationsAreVisible}: ${annotationsAreVisible}`\r\n      );\r\n    if (typeof hasChildren !== \"boolean\")\r\n      throw TypeError(\r\n        `hasChildren must be of type boolean, received ${typeof hasChildren}: ${hasChildren}`\r\n      );\r\n    if (!isInt(nestingDepth) || nestingDepth < 0)\r\n      throw TypeError(\r\n        `nestingDepth must be of type integer >= 0, received ${typeof nestingDepth}: ${nestingDepth}`\r\n      );\r\n    if (!isInt(totalObjectCount) || totalObjectCount < 0)\r\n      throw TypeError(\r\n        `totalObjectCount must be of type integer >= 0, received ${typeof totalObjectCount}: ${totalObjectCount}`\r\n      );\r\n    if (canBeChosen !== null && !(typeof canBeChosen === \"boolean\"))\r\n      throw TypeError(\r\n        `canBeChosen must be of type boolean, received ${typeof canBeChosen}: ${canBeChosen}`\r\n      );\r\n    if (!(typeof isChosen === \"boolean\"))\r\n      throw TypeError(\r\n        `isChosen must be of type boolean, received ${typeof isChosen}: ${isChosen}`\r\n      );\r\n\r\n    // Value assignments\r\n    this.id = id;\r\n    this.label = label;\r\n    this.isStructure = isStructure;\r\n    this.color = color;\r\n    this.isDynamic = isDynamic;\r\n    this.parentId = parentId;\r\n    this.sameLevelRank = sameLevelRank;\r\n    this.isUnfolded = isUnfolded;\r\n    this.annotationsAreVisible = annotationsAreVisible;\r\n    this.hasChildren = hasChildren;\r\n    this.nestingDepth = nestingDepth;\r\n    this.totalObjectCount = totalObjectCount;\r\n    this.canBeChosen = canBeChosen;\r\n    this.isChosen = isChosen;\r\n    this.toolSettings = toolSettings;\r\n    this.optionalParams = optionalParams;\r\n\r\n    if (id > Structure.maxId) Structure.__setMaxId(id);\r\n  }\r\n\r\n  /**\r\n   * Create a new structure from an object without needing to define all parameters individually.\r\n   * Accepts camelCase and PascalCase properties, with camelCase being the default.\r\n   * Additional properties will be ignored,\r\n   * missing properties will use defaults or throw error per Structure contructor.\r\n   * @param {object} obj An object containing all necessary properties of a structure.\r\n   * @returns {Structure} A new structure\r\n   */\r\n  static fromObject = (obj) => {\r\n    return new Structure(\r\n      obj.id ?? obj.Id,\r\n      obj.label ?? obj.Label,\r\n      obj.isStructure ?? obj.IsStructure,\r\n      obj.color ?? obj.Color,\r\n      obj.isDynamic ?? obj.IsDynamic,\r\n      obj.parentId ?? obj.ParentId,\r\n      obj.sameLevelRank ?? obj.SameLevelRank,\r\n      obj.isUnfolded ?? obj.IsUnfolded,\r\n      obj.annotationsAreVisible ?? obj.AnnotationsAreVisible,\r\n      obj.hasChildren ?? obj.HasChildren,\r\n      obj.nestingDepth ?? obj.NestingDepth,\r\n      obj.totalObjectCount ?? obj.TotalObjectCount,\r\n      obj.canBeChosen ?? obj.CanBeChosen,\r\n      obj.isChosen ?? obj.IsChosen,\r\n      obj.toolSettings ?? obj.ToolSettings,\r\n      obj.optionalParams ?? obj.OptionalParams\r\n    );\r\n  };\r\n\r\n  /**\r\n   * Create an independent (deep) copy of a structure.\r\n   * @param {Structure} structure Structure to copy.\r\n   * @returns {Structure} Copy of structure.\r\n   */\r\n  static copy = (structure) => {\r\n    if (!(structure instanceof Structure))\r\n      throw TypeError(\r\n        `structure must be of type Structure, recieved ${typeof structure}: ${structure}`\r\n      );\r\n    return new Structure(\r\n      structure.id,\r\n      structure.label,\r\n      structure.isStructure,\r\n      structure.color,\r\n      structure.isDynamic,\r\n      structure.parentId,\r\n      structure.sameLevelRank,\r\n      structure.isUnfolded,\r\n      structure.annotationsAreVisible,\r\n      structure.hasChildren,\r\n      structure.nestingDepth,\r\n      structure.totalObjectCount,\r\n      structure.canBeChosen,\r\n      structure.isChosen,\r\n      structure.toolSettings,\r\n      structure.optionalParams\r\n    );\r\n  };\r\n}\r\n\r\n//#region Structure properties\r\n/**\r\n * Gets a new, free structureId that is one larger than the largest id already present.\r\n * @param {Array} structures All existing structures.\r\n * @returns {uint} New, free structure id.\r\n */\r\nexport function newStructureId(structures) {\r\n  if (!Array.isArray(structures))\r\n    throw TypeError(\r\n      `structures must be of type Array, received ${typeof structures}: ${structures}`\r\n    );\r\n\r\n  const highestIdInStructures = Math.floor(\r\n    structures\r\n      .map((s) => s.id)\r\n      .reduce((a, b) => Math.max(Math.abs(a), Math.abs(b)), 0)\r\n  );\r\n  return Math.max(Structure.maxId, highestIdInStructures) + 1;\r\n}\r\n\r\n/**\r\n * Perform a check whether a structure can move in a certain direction.\r\n * @param {Structure} structure The structure to move.\r\n * @param {int} direction Number of steps to move, postive numbers lower the structure, negative numbers raise it.\r\n * @param {Array} structures The existing structures.\r\n * @returns {bool} Whether the intended move is allowed.\r\n */\r\nexport function structureCanMove(structure, direction, structures) {\r\n  if (!(structure instanceof Structure)) {\r\n    throw TypeError(\r\n      `structure must be of type Structure, recieved ${typeof structure}: ${structure}`\r\n    );\r\n  }\r\n  if (!isInt(direction)) {\r\n    throw TypeError(\r\n      `direction must be of type int, received ${typeof direction}: ${direction}`\r\n    );\r\n  }\r\n  if (!Array.isArray(structures)) {\r\n    throw TypeError(\r\n      `structures must be of type Array, received ${typeof structures}: ${structures}`\r\n    );\r\n  }\r\n\r\n  // No movement requested\r\n  if (direction === 0) return true;\r\n\r\n  // Sort siblings by rank\r\n  let siblings = structures\r\n    .filter((s) => s.parentId === structure.parentId)\r\n    .sort((a, b) => a.sameLevelRank - b.sameLevelRank);\r\n\r\n  // Structure not in structures\r\n  if (\r\n    siblings.length === 0 ||\r\n    !siblings.some((s) => s.id === structure.id && s.label === structure.label)\r\n  ) {\r\n    throw Error(`Structure ${structure.label} not found in structures`);\r\n  }\r\n\r\n  let sameLevelIndex = siblings.findIndex((s) => s.id === structure.id);\r\n\r\n  // Check if new position would be in bounds of array\r\n  if (\r\n    sameLevelIndex + direction < 0 ||\r\n    sameLevelIndex + direction > siblings.length - 1\r\n  ) {\r\n    return false;\r\n  } else {\r\n    return true;\r\n  }\r\n}\r\n\r\n/**\r\n * Finds all parents of a structure.\r\n * Returns them in the order beginning from top and ending at given structure.\r\n * @param {Structure} structure The structure to find all parents for.\r\n * @param {Array} structures Existing structures.\r\n * @returns {Array} All parent structures, including the structure itself.\r\n */\r\nexport function parentStructures(structure, structures) {\r\n  if (!(structure instanceof Structure))\r\n    throw TypeError(\r\n      `structure must be of type Structure, recieved ${typeof structure}: ${structure}`\r\n    );\r\n  if (!Array.isArray(structures))\r\n    throw TypeError(\r\n      `structures must be of type Array, received ${typeof structures}: ${structures}`\r\n    );\r\n\r\n  let parentStructs = [];\r\n\r\n  // Recursively traverse structure tree upwards\r\n  if (structure.parentId !== null) {\r\n    parentStructs.push(\r\n      ...parentStructures(\r\n        structures.find((s) => s.id === structure.parentId),\r\n        structures\r\n      ),\r\n      structure\r\n    );\r\n    return parentStructs;\r\n  } else {\r\n    return [structure];\r\n  }\r\n}\r\n\r\n/**\r\n * Finds all children of a structure, beginning at the given structure and\r\n * ending with child-free structures.\r\n * @param {Structure} structure The structure to find all children for.\r\n * @param {Array} structures Existing structures.\r\n * @returns {Array} All child structures, including the structure itself.\r\n */\r\nexport function childStructures(structure, structures) {\r\n  if (!(structure instanceof Structure))\r\n    throw TypeError(\r\n      `structure must be of type Structure, recieved ${typeof structure}: ${structure}`\r\n    );\r\n  if (!Array.isArray(structures))\r\n    throw TypeError(\r\n      `structures must be of type Array, received ${typeof structures}: ${structures}`\r\n    );\r\n\r\n  // Bottom end of structure tree\r\n  if (!structure.hasChildren) {\r\n    return [structure];\r\n  } else {\r\n    let childStructs = [structure];\r\n\r\n    structures\r\n      .filter((s) => s.parentId === structure.id)\r\n      .forEach((s) => childStructs.push(...childStructures(s, structures)));\r\n\r\n    return childStructs;\r\n  }\r\n}\r\n\r\n//#endregion\r\n//#region Structure actions\r\n/**\r\n * Sorts structures by their hierarchy.\r\n * @param {array} structures All structures imported from a project as list.\r\n * @param {Structure} parentStructure The topmost parent structure under which all structures will be sorted.\r\n *                                    Defaults to null to begin at the topmost level.\r\n * @returns {array} The structures sorted based on their hierarchy.\r\n */\r\nexport function sortStructures(structures, parentStructure = null) {\r\n  if (parentStructure !== null && !(parentStructure instanceof Structure))\r\n    throw TypeError(\r\n      `parentStructure must be of type Structure, recieved ${typeof parentStructure}: ${parentStructure}`\r\n    );\r\n\r\n  // Find all children of parentstructure\r\n  let children = structures.filter((s) =>\r\n    parentStructure === null\r\n      ? s.parentId === parentStructure\r\n      : s.parentId === parentStructure.id\r\n  );\r\n\r\n  // Sort by sameLevelRank\r\n  children.sort((a, b) => a.sameLevelRank - b.sameLevelRank);\r\n\r\n  // Check if they have children of their own and sort recursively.\r\n  let sorted = [];\r\n  children.forEach((child) => {\r\n    if (child.hasChildren) {\r\n      sorted = [...sorted, ...sortStructures(structures, child)];\r\n    } else {\r\n      sorted = [...sorted, child];\r\n    }\r\n  });\r\n\r\n  // Combine with parent and return as array\r\n  if (parentStructure !== null) {\r\n    return [parentStructure, ...sorted];\r\n  } else {\r\n    return sorted;\r\n  }\r\n}\r\n\r\n/**\r\n * Move an existing structure in a defined direction.\r\n * Invalid moves return original array.\r\n * @param {Structure} structure The structure to move.\r\n * @param {int} direction Number of steps to move, postive numbers lower the structure, negative numbers raise it.\r\n * @param {Array} structures The existing structures.\r\n * @returns {Array} The modified structures.\r\n */\r\nexport function moveStructure(structure, direction, structures) {\r\n  if (!(structure instanceof Structure)) {\r\n    throw TypeError(\r\n      `structure must be of type Structure, recieved ${typeof structure}: ${structure}`\r\n    );\r\n  }\r\n  if (!isInt(direction)) {\r\n    throw TypeError(\r\n      `direction must be of type int, received ${typeof direction}: ${direction}`\r\n    );\r\n  }\r\n  if (!Array.isArray(structures)) {\r\n    throw TypeError(\r\n      `structures must be of type Array, received ${typeof structures}: ${structures}`\r\n    );\r\n  }\r\n\r\n  // No move requested, return original\r\n  if (direction === 0) return structures;\r\n\r\n  // Sort siblings by rank\r\n  const siblings = structures\r\n    .filter((s) => s.parentId === structure.parentId)\r\n    .sort((a, b) => a.sameLevelRank - b.sameLevelRank);\r\n\r\n  // Move not possible, return original structures\r\n  if (!structureCanMove(structure, direction, siblings)) return structures;\r\n\r\n  const sameLevelIndex = siblings.findIndex((s) => s.id === structure.id);\r\n  const newSameLevelRank = siblings[sameLevelIndex + direction].sameLevelRank;\r\n\r\n  // All items between old and new rank must be updated\r\n  const sibsToModify = siblings.filter((s) => {\r\n    if (direction > 0) {\r\n      return (\r\n        s.sameLevelRank >= structure.sameLevelRank &&\r\n        s.sameLevelRank <= newSameLevelRank\r\n      );\r\n    } else {\r\n      return (\r\n        s.sameLevelRank <= structure.sameLevelRank &&\r\n        s.sameLevelRank >= newSameLevelRank\r\n      );\r\n    }\r\n  });\r\n  // Rotate ranking values of all affected siblings\r\n  const prevRanks = sibsToModify.map((s) => s.sameLevelRank);\r\n  sibsToModify.forEach((s, idx) => {\r\n    s.sameLevelRank =\r\n      prevRanks[(idx + sibsToModify.length + direction) % sibsToModify.length];\r\n  });\r\n\r\n  // Structures are already edited by reference\r\n  return sortStructures(structures);\r\n}\r\n\r\n/**\r\n * Insert a new structure into the list of existing structures, update structures as necessary.\r\n * @param {Structure} structure A structure to insert into existing structures.\r\n * @param {Array} structures List of all existing structures.\r\n * @returns {Array} Updated structure list.\r\n */\r\nexport function insertStructure(structure, structures) {\r\n  if (!(structure instanceof Structure))\r\n    throw TypeError(\r\n      `structure must be of type Structure, recieved ${typeof structure}: ${structure}`\r\n    );\r\n  if (!Array.isArray(structures))\r\n    throw TypeError(\r\n      `structures must be of type Array, received ${typeof structures}: ${structures}`\r\n    );\r\n\r\n  // Do not allow duplicate ids.\r\n  if (structures.map((s) => s.id).some((id) => id === structure.id)) {\r\n    throw Error(\r\n      `id \"${structure.id}\" already present in structures. \r\n      Please use the newStructureId() method to generate a unique id.`\r\n    );\r\n  }\r\n\r\n  // Find all same level-children and sort as lowest\r\n  structure.sameLevelRank =\r\n    structures\r\n      .filter((s) => s.parentId === structure.parentId)\r\n      .map((s) => s.id)\r\n      .reduce((a, b) => Math.max(a, b), -1) + 1;\r\n\r\n  // Update parent\r\n  if (structure.parentId !== null) {\r\n    const parent = structures.find((s) => s.id === structure.parentId);\r\n    parent.hasChildren = true;\r\n    parent.isUnfolded = true;\r\n  }\r\n\r\n  // Add adapted structure to all structures\r\n  structures.push(structure);\r\n\r\n  return sortStructures(structures);\r\n}\r\n\r\n/**\r\n * Delete a structure from the list of existing structures, update structures as necessary.\r\n * @param {Structure} structure The structure to delete from existing structures.\r\n * @param {Array} structures List of all existing structures.\r\n * @param {function} deleteAnnotations Optional. Delete rois of structure given to function. Receives (Structure: structureToDelete).\r\n * @returns {Array} Updated structure list.\r\n */\r\nexport function deleteStructure(\r\n  structure,\r\n  structures,\r\n  deleteAnnotations = () => {}\r\n) {\r\n  if (!(structure instanceof Structure))\r\n    throw TypeError(\r\n      `structure must be of type Structure, recieved ${typeof structure}: ${structure}`\r\n    );\r\n  if (!Array.isArray(structures))\r\n    throw TypeError(\r\n      `structures must be of type Array, received ${typeof structures}: ${structures}`\r\n    );\r\n\r\n  // Delete all rois of structure and its children\r\n  // Find all children and delete them\r\n  childStructures(structure, structures).forEach((s) => {\r\n    deleteAnnotations(s);\r\n    structures.splice(\r\n      structures.findIndex((struct) => struct.id === s.id),\r\n      1\r\n    );\r\n  });\r\n\r\n  // Find all siblings\r\n  const siblings = structures\r\n    .filter((s) => s.parentId === structure.parentId)\r\n    .sort((a, b) => a.sameLevelRank - b.sameLevelRank);\r\n\r\n  // Should parent no longer have children\r\n  if (siblings.length === 0 && structure.parentId !== null) {\r\n    structures.find((s) => s.id === structure.parentId).hasChildren = false;\r\n    return sortStructures(structures);\r\n  }\r\n\r\n  // Update sameLevelRank of all siblings\r\n  siblings.forEach((s, idx) => (s.sameLevelRank = idx));\r\n\r\n  return sortStructures(structures);\r\n}\r\n\r\n/**\r\n * Duplicates a structure including all its decendents and\r\n * Inserts the duplicate as lowest sibling in same hierarchical rank.\r\n * @param {Structure} structure The structure to duplicate.\r\n * @param {Array} structures Existing structures.\r\n * @returns {Array} The updated structures.\r\n */\r\nexport function duplicateStructure(structure, structures) {\r\n  if (!(structure instanceof Structure))\r\n    throw TypeError(\r\n      `structure must be of type Structure, recieved ${typeof structure}: ${structure}`\r\n    );\r\n  if (!Array.isArray(structures))\r\n    throw TypeError(\r\n      `structures must be of type Array, received ${typeof structures}: ${structures}`\r\n    );\r\n\r\n  // Find all children of structure to duplicate, including the structure\r\n  const childStructs = childStructures(structure, structures);\r\n\r\n  // Reserve new Ids\r\n  const firstNewId = newStructureId(structures);\r\n  const newIds = Array(childStructs.length);\r\n  for (let i = 0; i < childStructs.length; i++) {\r\n    newIds[i] = firstNewId + i;\r\n  }\r\n\r\n  // Create new structures based on children\r\n  const newStructs = childStructs.map((s) => Structure.copy(s));\r\n\r\n  // Adapt parent-Ids\r\n  newStructs.forEach((s, idx) => {\r\n    s.id = newIds[idx];\r\n    s.label = `Copy: ${s.label}`;\r\n    const parentIdx = childStructs.findIndex((cs) => cs.id === s.parentId);\r\n\r\n    // If parent is one of the newly added structures, adapt to the new id.\r\n    if (parentIdx >= 0) s.parentId = newIds[parentIdx];\r\n  });\r\n\r\n  structures = insertStructure(newStructs.shift(), structures);\r\n  structures.push(...newStructs);\r\n  const tmp = sortStructures(structures);\r\n  return tmp;\r\n}\r\n\r\n/**\r\n * Export structuretree in frontend to .strhsa file.\r\n * @param {string} username Full username of exporting user.\r\n * @param {object} project Project the structures referr to.\r\n * @param {array} structures Structuretree to export.\r\n * @returns {object} Success status of export.\r\n */\r\nexport function exportStructures(username, project, structures) {\r\n  if (typeof username !== \"string\") {\r\n    throw TypeError(\r\n      `username must be of type string, received ${typeof username}: ${username}`\r\n    );\r\n  }\r\n  if (!isObject(project)) {\r\n    throw TypeError(\r\n      `project must be of type object, received ${typeof project}: ${project}`\r\n    );\r\n  }\r\n  if (!Array.isArray(structures)) {\r\n    throw TypeError(\r\n      `structures must be an array, received ${typeof structures}: ${structures}`\r\n    );\r\n  }\r\n\r\n  try {\r\n    // Export rois with meta info\r\n    const timestamp = convertDateToShortIsoString(Date.now());\r\n    downloadJsonObjectAsFile(\r\n      {\r\n        version: 1.0,\r\n        timestamp: timestamp,\r\n        user: username,\r\n        project: project,\r\n        structures,\r\n      },\r\n      `${timestamp}_${project.name}_StructureTree_(${structures.length}_Structures).strhsa`\r\n    );\r\n\r\n    return {\r\n      success: true,\r\n      msg: `Successfully exported ${structures.length} structures.`,\r\n    };\r\n  } catch (err) {\r\n    return {\r\n      success: false,\r\n      msg: `Failed to export ${structures.length} structures.`,\r\n      error: err,\r\n    };\r\n  }\r\n}\r\n\r\n/**\r\n * Import structures from .strhsa file. Replaces all current structures and deletes all current frontend annotations.\r\n * @param {uint} firstNewId First new id for new structures.\r\n * @param {function} callback Function to execute with the new structures. Receives (array: newStructures).\r\n * @param {function} error Optional. Function to execute on error. Receives (string: errorMessage).\r\n * @returns\r\n */\r\nexport async function importStructures(firstNewId, callback, error = () => {}) {\r\n  if (!isInt(firstNewId) || firstNewId < 0)\r\n    throw TypeError(\r\n      `firstNewId must be an integer >= 0, received ${typeof firstNewId}: ${firstNewId}`\r\n    );\r\n  if (typeof callback !== \"function\")\r\n    throw TypeError(\r\n      `callback must be a function, received ${typeof callback}: ${callback}`\r\n    );\r\n  if (typeof error !== \"function\")\r\n    throw TypeError(\r\n      `error must be a function, received ${typeof error}: ${error}`\r\n    );\r\n\r\n  // Structure replacement warning\r\n  const continueImport = await window.openConfirmationDialog(\r\n    \"Import Structures\",\r\n    `All structures and annotations will be deleted and replaced with the imported structures.\r\n    Import anyway?`\r\n  );\r\n  if (!continueImport) return;\r\n\r\n  const files = await requestFileInput([\".strhsa\"]);\r\n  if (files.length === 0) return;\r\n  const file = files[0];\r\n\r\n  const fr = new FileReader();\r\n  fr.onload = async (e) => {\r\n    try {\r\n      const data = JSON.parse(e.target.result);\r\n      if (!Array.isArray(data.structures)) {\r\n        window.showErrorSnackbar(`No valid structures found in ${file.name}.`);\r\n        return;\r\n      }\r\n\r\n      // Empty structure import warning\r\n      if (data.structures.length == 0) {\r\n        const continueImport = await window.openConfirmationDialog(\r\n          \"No structures to import\",\r\n          `There are no structures included in uploaded file. \r\n          An import will remove all existing structures, including their annotations. \r\n          Import anyway?`\r\n        );\r\n        if (!continueImport) return;\r\n      }\r\n\r\n      let newStructures = [];\r\n\r\n      // Replace full structure tree\r\n      data.structures.forEach((s) => {\r\n        const newStruct = Structure.fromObject(s);\r\n        newStructures = insertStructure(newStruct, newStructures);\r\n      });\r\n\r\n      // Reserve new Ids\r\n      const newIds = Array(data.structures.length);\r\n      for (let i = 0; i < data.structures.length; i++) {\r\n        newIds[i] = firstNewId + i;\r\n      }\r\n\r\n      // Update parent-child relationships\r\n      newStructures.forEach((s) => {\r\n        if (!s.parentId) return;\r\n        const parentIndex = newStructures.findIndex(\r\n          (struct) => struct.id === s.parentId\r\n        );\r\n        s.parentId = newIds[parentIndex];\r\n      });\r\n\r\n      // Update ids\r\n      newStructures.forEach((s, i) => (s.id = newIds[i]));\r\n\r\n      // Set new structures\r\n      callback(sortStructures(newStructures));\r\n    } catch (err) {\r\n      const errmsg = `Failed to import the structures from file ${file.name}:\\n${err}`;\r\n      console.debug(errmsg);\r\n      error(errmsg);\r\n    }\r\n  };\r\n  // Only accept the first element\r\n  fr.readAsText(file);\r\n}\r\n//#endregion\r\n","// Copyright HS Analysis GmbH, 2023\r\n// Author: Valentin Haas\r\n\r\n// Description: Standardized Roi Types for HSA KIT.\r\n// For ROI documentation see https://hsa.atlassian.net/wiki/spaces/HSAKIT/pages/16116235173917/Annotations+Data+Structure\r\n\r\n// Keep in sync with C# and js frontend:\r\n// Source\\HSA-KIT\\Database\\Model\\RoiTypes.cs\r\n// Source\\HSA-KIT\\ClientApp\\src\\common\\components\\RoiTypes.jsx\r\n// Source\\HSA-KIT\\modules\\hsa\\core\\models\\roi_types.py\r\n\r\n// External packages\r\nimport { v4 as uuidv4 } from \"uuid\";\r\n\r\n// HSA imports\r\nimport Backend from \"../utils/Backend\";\r\nimport { isInt, isUuid, downloadJsonObjectAsFile } from \"../utils/Utils\";\r\nimport { convertDateToShortIsoString } from \"../../common/utils/Localization\";\r\nimport { calcBoundingBoxFullObject } from \"../../viewer/utils/PolygonUtil\";\r\nimport Structure from \"./Structure\";\r\n\r\n//#region DataType Enumerators\r\n/**\r\n * Limits and describes possible modification statuses.\r\n */\r\nexport const ModificationStatus = Object.freeze({\r\n  // Must be updated together with backend\r\n  Saved: 0,\r\n  Added: 1,\r\n  Deleted: 2,\r\n});\r\n\r\n/**\r\n * Limits and describes annotation types.\r\n */\r\nexport const RoiType = Object.freeze({\r\n  // Must be updated together with backend\r\n  ImageRoi: 0,\r\n  AudioRoi: 1,\r\n});\r\n\r\n/**\r\n * Limits and decribes possible image annotation types statuses.\r\n */\r\nexport const ImageAnnotationType = Object.freeze({\r\n  // Must be updated together with backend\r\n  Area: 0,\r\n  Object: 1,\r\n  Comments: 2,\r\n});\r\n\r\n/**\r\n * Implemented actions concerning annotations to be executed.\r\n */\r\nexport const AnnotationAction = Object.freeze({\r\n  // Must be updated together with backend\r\n  Save: 0,\r\n  Export: 1,\r\n  Import: 2,\r\n  DeleteAll: 3,\r\n});\r\n//#endregion\r\n\r\n//#region Roi Actions\r\n\r\n/**\r\n * Save all passed rois to database.\r\n * Update rois in frontend based on response from backend.\r\n * @param {uuid} projectId Project id to save annotations for.\r\n * @param {object} file File to save annotations for.\r\n * @param {Structure} structure Structure to save annotations for.\r\n * @param {RoiType} annotationType Type of rois to save.\r\n * @param {array} annotations Annotations to save.\r\n * @param {function} callback Optional: Always execute after receiving and processing save response. Receives (array: newAnnotations).\r\n * @param {function} error Optional: Execute on error. Receives (object: error).\r\n */\r\nexport function saveAnnotations(\r\n  projectId,\r\n  file,\r\n  structure,\r\n  annotationType,\r\n  annotations,\r\n  callback = () => {},\r\n  error = () => {}\r\n) {\r\n  if (!isUuid(projectId)) {\r\n    throw TypeError(\r\n      `projectId must be a valid UUID, received ${typeof projectId}: ${projectId}`\r\n    );\r\n  }\r\n  if (typeof file !== \"object\") {\r\n    throw TypeError(\r\n      `file must be of type object, received ${typeof file}: ${file}`\r\n    );\r\n  }\r\n  if (!(structure instanceof Structure)) {\r\n    throw TypeError(\r\n      `structure must be of type Structure, received ${typeof structure}: ${structure}`\r\n    );\r\n  }\r\n  if (!Object.values(RoiType).includes(annotationType)) {\r\n    `annotationType unknown, received ${typeof annotationType}: ${annotationType}`;\r\n  }\r\n  if (!Array.isArray(annotations)) {\r\n    throw TypeError(\r\n      `annotations must be an array, received ${typeof annotations}: ${annotations}`\r\n    );\r\n  }\r\n\r\n  Backend.saveAnnotationsToDb(\r\n    projectId,\r\n    RoiType.AudioRoi,\r\n    annotations,\r\n    (data) => {\r\n      // Read potentially updated roi ids.\r\n      let oldIds = [];\r\n      let newIds = [];\r\n\r\n      data.roiUpdate.reassignedIds.forEach((idTuple) => {\r\n        oldIds.push(idTuple[0]);\r\n        newIds.push(idTuple[1]);\r\n      });\r\n\r\n      annotations = annotations.map((a) => {\r\n        // Mirror potentially updated roi ids.\r\n        if (oldIds.includes(a.id)) {\r\n          a.id = newIds[oldIds.indexOf(a.id)];\r\n        }\r\n\r\n        // Everything was successfull -> Mark all annotations as saved.\r\n        switch (a.modificationStatus) {\r\n          case ModificationStatus.Saved:\r\n            return a;\r\n\r\n          case ModificationStatus.Added:\r\n            a.modificationStatus = ModificationStatus.Saved;\r\n            return a;\r\n\r\n          case ModificationStatus.Deleted:\r\n            // Exclude successfully deleted rois.\r\n            break;\r\n\r\n          default:\r\n            break;\r\n        }\r\n      });\r\n\r\n      // Remove undefineds\r\n      annotations = annotations.filter((a) => a);\r\n      console.debug(\r\n        `Saved annotations for file \"${file.fileName}\", structure ${structure.label}: ${data.success}`\r\n      );\r\n      callback(annotations);\r\n    },\r\n    (err) => {\r\n      // Some annotations failed to save to database.\r\n      if (err.warning) {\r\n        let oldIds = [];\r\n        let newIds = [];\r\n\r\n        // Read potentially updated roi ids.\r\n        err.roiUpdate.reassignedIds.forEach((idTuple) => {\r\n          oldIds.push(idTuple[0]);\r\n          newIds.push(idTuple[1]);\r\n        });\r\n\r\n        annotations = annotations.map((a) => {\r\n          // Mirror potentially updated roi ids.\r\n          if (oldIds.includes(a.id)) {\r\n            a.id = newIds[oldIds.indexOf(a.id)];\r\n          }\r\n\r\n          if (a.modificationStatus === ModificationStatus.Saved) {\r\n            return a;\r\n          }\r\n          // Keep unsuccessfully added or unsuccessfully deleted rois unchanged\r\n          else if (\r\n            err.roiUpdate.failedToAdd.includes(a.id) ||\r\n            err.roiUpdate.failedToDelete.includes(a.id)\r\n          ) {\r\n            return a;\r\n          }\r\n          // Set successfully added rois as saved.\r\n          else if (a.modificationStatus === ModificationStatus.Added) {\r\n            a.modificationStatus = ModificationStatus.Saved;\r\n            return a;\r\n          }\r\n          // Exclude successfully deleted rois.\r\n        });\r\n\r\n        // Remove undefineds\r\n        annotations = annotations.filter((a) => a);\r\n\r\n        window.showWarningSnackbar(err.warning);\r\n        console.debug(err);\r\n        error(err);\r\n        callback(annotations);\r\n      }\r\n      // The save process went wrong somewhere\r\n      else if (err.error) {\r\n        window.showErrorSnackbar(\r\n          `Error saving annotations of file \"${file.fileName}\", structure ${structure.label}:\\n${err.error}`\r\n        );\r\n        error(err);\r\n      }\r\n      // Good luck\r\n      else {\r\n        window.showErrorSnackbar(\r\n          `Unkonwn error saving annotations of file \"${file.fileName}\", structure ${structure.label}\"`\r\n        );\r\n        error(err);\r\n      }\r\n    }\r\n  );\r\n}\r\n\r\n/**\r\n * Export all annotations in frontend to .annhsa file.\r\n * Triggers download of the .annhsa file.\r\n * @param {string} username Name of the user exporting the annotations.\r\n * @param {object} project Origin project of the rois.\r\n * @param {object} file File corresponding to the rois.\r\n * @param {Structure} structure Structure corresponding to the rois.\r\n * @param {RoiType} annotationType Type of rois to save.\r\n * @param {array} annotations All annotations.\r\n * @return {object} Success status of export.\r\n */\r\nexport function exportAnnotations(\r\n  username,\r\n  project,\r\n  file,\r\n  structure,\r\n  annotationType,\r\n  annotations\r\n) {\r\n  if (typeof username !== \"string\") {\r\n    throw TypeError(\r\n      `username must be of type string, received ${typeof username}: ${username}`\r\n    );\r\n  }\r\n  if (typeof project !== \"object\") {\r\n    throw TypeError(\r\n      `project must be of type object, received ${typeof project}: ${project}`\r\n    );\r\n  }\r\n  if (typeof file !== \"object\") {\r\n    throw TypeError(\r\n      `file must be of type object, received ${typeof file}: ${file}`\r\n    );\r\n  }\r\n  if (!(structure instanceof Structure)) {\r\n    throw TypeError(\r\n      `structure must be of type Structure, received ${typeof structure}: ${structure}`\r\n    );\r\n  }\r\n  if (!Object.values(RoiType).includes(annotationType)) {\r\n    `annotationType unknown, received ${typeof annotationType}: ${annotationType}`;\r\n  }\r\n  if (!Array.isArray(annotations)) {\r\n    throw TypeError(\r\n      `annotations must be an array, received ${typeof annotations}: ${annotations}`\r\n    );\r\n  }\r\n\r\n  try {\r\n    // Export rois with meta info\r\n    const timestamp = convertDateToShortIsoString(Date.now());\r\n    downloadJsonObjectAsFile(\r\n      {\r\n        version: 1.0,\r\n        timestamp: timestamp,\r\n        user: username,\r\n        project: project,\r\n        file: {\r\n          id: file.id,\r\n          label: file.fileName,\r\n        },\r\n        structure: {\r\n          id: structure.id,\r\n          label: structure.label,\r\n          isStructure: structure.isStructure,\r\n        },\r\n        annotationType: annotationType,\r\n        annotations: annotations,\r\n      },\r\n      `${timestamp}_${project.name}_${file.fileName}_${structure.label}_(${annotations.length})_${username}.annhsa`\r\n    );\r\n\r\n    return {\r\n      success: true,\r\n      msg: `Successfully exported ${annotations.length} annotations of structure ${structure.label}`,\r\n    };\r\n  } catch (err) {\r\n    return {\r\n      success: false,\r\n      msg: `Failed to export ${annotations.length} annotations of structure ${structure.label}`,\r\n      error: err,\r\n    };\r\n  }\r\n}\r\n\r\n/**\r\n * Open a file selection window and import annotations from selected file to frontend.\r\n * Deletes all previous annotations.\r\n * @param {RoiType} annotationType The expected annotation type.\r\n * @param {array} existingAnnotations The previously exisiting annotations. Will all be set as to delete.\r\n * @param {object} file File corresponding to the rois.\r\n * @param {Structure} structure Structure corresponding to the rois.\r\n * @param {function} callback Always executes after loading and processing annotations. Receives (array: annotations).\r\n * @param {function} error Optional: Execute on error. Receives (object: error).\r\n */\r\nexport async function importAnnotations(\r\n  annotationType,\r\n  existingAnnotations,\r\n  file,\r\n  structure,\r\n  callback,\r\n  error = () => {}\r\n) {\r\n  if (!Object.values(RoiType).includes(annotationType)) {\r\n    `annotationType unknown, received ${typeof annotationType}: ${annotationType}`;\r\n  }\r\n  if (!Array.isArray(existingAnnotations)) {\r\n    throw TypeError(\r\n      `existingAnnotations must be an array, received ${typeof existingAnnotations}: ${existingAnnotations}`\r\n    );\r\n  }\r\n  if (typeof file !== \"object\") {\r\n    throw TypeError(\r\n      `file must be of type object, received ${typeof file}: ${file}`\r\n    );\r\n  }\r\n  if (!(structure instanceof Structure)) {\r\n    throw TypeError(\r\n      `structure must be of type Structure, received ${typeof structure}: ${structure}`\r\n    );\r\n  }\r\n\r\n  // Warn about unsaved existing annotations\r\n  const unsaved = existingAnnotations.filter(\r\n    (a) => a.modificationStatus !== ModificationStatus.Saved\r\n  ).length;\r\n  if (unsaved > 0) {\r\n    const continueImport = await window.openConfirmationDialog(\r\n      \"Unsaved annotations\",\r\n      `You have ${unsaved} unsaved modified ${\r\n        unsaved === 1 ? \"annotation\" : \"annotations\"\r\n      } in the structure \"${structure.label}\". \r\n      An import will irreversibly remove all unsaved annotations. \r\n      Import anyway?`\r\n    );\r\n    if (!continueImport) return;\r\n  }\r\n\r\n  // Import window\r\n  const inputElem = document.createElement(\"INPUT\");\r\n  inputElem.setAttribute(\"type\", \"file\");\r\n  inputElem.setAttribute(\"onChange\", \"file\");\r\n  inputElem.setAttribute(\"accept\", \".annhsa\");\r\n  inputElem.onchange = (e) => {\r\n    // Analyse the incoming file, abort on no file.\r\n    let files = e.target.files;\r\n    if (files.length <= 0) return;\r\n\r\n    let fr = new FileReader();\r\n    fr.onload = async (e) => {\r\n      try {\r\n        const data = JSON.parse(e.target.result);\r\n        // Data validation checks\r\n        // TODO: Refactor into some kind of async .then functions\r\n        if (data.annotationType !== annotationType) {\r\n          throw TypeError(\r\n            `Annotation type mismatch: was expecting \"${annotationType}\", imported file is of type \"${data.annotationType}\"`\r\n          );\r\n        }\r\n\r\n        // Warn about file change\r\n        if (data.file.id !== file.id && data.file.label !== file.fileName) {\r\n          const continueImport = await window.openConfirmationDialog(\r\n            \"File Mismatch\",\r\n            `The annotations were created for a different file:\\n\"${data.file.label}\". \r\n            You are attempting to import it to the file:\\n\"${file.fileName}\". \r\n            An import will remove all existing annotations. \r\n            Import anyway?`\r\n          );\r\n          if (!continueImport) return;\r\n        }\r\n\r\n        // Warn about structure change\r\n        if (\r\n          data.structure.id !== structure.id &&\r\n          data.structure.label !== structure.label\r\n        ) {\r\n          const continueImport = await window.openConfirmationDialog(\r\n            \"Structure Mismatch\",\r\n            `The annotations were created for a different structure: \"${data.structure.label}\". \r\n            You are attempting to import it to the structure: \"${structure.label}\". \r\n            An import will remove all existing annotations. \r\n            Import anyway?`\r\n          );\r\n          if (!continueImport) return;\r\n        }\r\n\r\n        // Warn about 0-length imported annotations\r\n        if (data.annotations.length === 0) {\r\n          const continueImport = await window.openConfirmationDialog(\r\n            \"No annotatations to import\",\r\n            `There are no annotations included in uploaded file. \r\n            An import will remove all existing annotations. \r\n            Import anyway?`\r\n          );\r\n          if (!continueImport) return;\r\n        }\r\n\r\n        const importedAnnotations = [];\r\n        switch (annotationType) {\r\n          case RoiType.ImageRoi:\r\n            data.annotations.forEach((a) =>\r\n              importedAnnotations.push(\r\n                new ImageRoi(\r\n                  uuidv4(),\r\n                  file.id,\r\n                  structure.id,\r\n                  a.isAiAnnotated,\r\n                  a.user,\r\n                  ModificationStatus.Added,\r\n                  a.z,\r\n                  a.t,\r\n                  a.coordinates,\r\n                  a.annotationType,\r\n                  a.minX,\r\n                  a.minY,\r\n                  a.maxX,\r\n                  a.maxY\r\n                )\r\n              )\r\n            );\r\n            break;\r\n\r\n          case RoiType.AudioRoi:\r\n            data.annotations.forEach((a) =>\r\n              importedAnnotations.push(\r\n                new AudioRoi(\r\n                  uuidv4(),\r\n                  file.id,\r\n                  structure.id,\r\n                  a.isAiAnnotated,\r\n                  a.user,\r\n                  ModificationStatus.Added,\r\n                  a.startTime,\r\n                  a.endTime,\r\n                  a.minFreq,\r\n                  a.maxFreq,\r\n                  a.channels\r\n                )\r\n              )\r\n            );\r\n            break;\r\n\r\n          default:\r\n            break;\r\n        }\r\n\r\n        // Set all existing annotations as deleted\r\n        existingAnnotations.forEach(\r\n          (anno) => (anno.modificationStatus = ModificationStatus.Deleted)\r\n        );\r\n\r\n        callback([...existingAnnotations, ...importedAnnotations]);\r\n      } catch (err) {\r\n        const errmsg = `Failed to import the annotations of type ${annotationType} from file ${files[0].name}:\\n${err}`;\r\n        console.debug(errmsg);\r\n        error(errmsg);\r\n      }\r\n    };\r\n    // Only accept the first element\r\n    fr.readAsText(files.item(0));\r\n  };\r\n  inputElem.click();\r\n  inputElem.remove();\r\n}\r\n\r\n/**\r\n * After a confirming prompt, delete all annotations of a structure in frontend.\r\n * @param {array} existingAnnotations The previously exisiting annotations. Will all be set as to delete.\r\n * @param {Structure} structure Structure corresponding to the rois.\r\n * @param {function} callback Save updated annotations after modfication. Receives (array: annotations).\r\n * @param {bool} forceDelete Optional. Delete all annotations with out asking user first. Defaults to false.\r\n */\r\nexport async function deleteAllAnnotations(\r\n  existingAnnotations,\r\n  structure,\r\n  callback,\r\n  forceDelete = false\r\n) {\r\n  if (!Array.isArray(existingAnnotations)) {\r\n    throw TypeError(\r\n      `existingAnnotations must be an array, received ${typeof existingAnnotations}: ${existingAnnotations}`\r\n    );\r\n  }\r\n  if (!(structure instanceof Structure)) {\r\n    throw TypeError(\r\n      `structure must be of type Structure, received ${typeof structure}: ${structure}`\r\n    );\r\n  }\r\n  if (typeof forceDelete !== \"boolean\") {\r\n    throw TypeError(\r\n      `forceDelete must be a boolean, received ${typeof forceDelete}: ${forceDelete}`\r\n    );\r\n  }\r\n  const continueDeletion =\r\n    forceDelete ||\r\n    (await window.openConfirmationDialog(\r\n      \"Delete all Annotations\",\r\n      `This action will delete all annotations of the structure \"${structure.label}\". Proceed?`\r\n    ));\r\n  if (!continueDeletion) return;\r\n\r\n  const updatedAnnotations = existingAnnotations.map((a) => {\r\n    a.modificationStatus = ModificationStatus.Deleted;\r\n    return a;\r\n  });\r\n\r\n  callback(updatedAnnotations);\r\n}\r\n\r\n//#endregion\r\n\r\n//#region General Roi definitions\r\n/**\r\n * Basic information every type of region of interest (ROI) must contain.\r\n */\r\nclass Roi {\r\n  // Must be updated together with backend\r\n  /**\r\n   * Create a ROI object with all parameters.\r\n   * @param {Guid} id Id of the ROI.\r\n   * @param {Guid} fileId Id of the associated scene.\r\n   * @param {uint} structure Id of associated structure.\r\n   * @param {bool} isAiAnnotated Whether or not this annotation is AI generated.\r\n   * @param {ModificationStatus} modificationStatus Status of modification of any single annotation.\r\n   * @param {Guid} user User that created this annotation.\r\n   */\r\n  constructor(\r\n    id,\r\n    fileId,\r\n    structure,\r\n    isAiAnnotated,\r\n    modificationStatus = ModificationStatus.Added,\r\n    user\r\n  ) {\r\n    // Input validation\r\n    if (!isUuid(id)) {\r\n      throw TypeError(\r\n        `id must be a non-nil UUID, received ${typeof id}: ${id}`\r\n      );\r\n    }\r\n    if (!isUuid(fileId)) {\r\n      throw TypeError(\r\n        `fileId must be a non-nil UUID, received ${typeof fileId}: ${fileId}`\r\n      );\r\n    }\r\n    if (!isInt(structure) || structure < 0) {\r\n      throw TypeError(\r\n        `structure must be an integer >= 0, received ${typeof structure}: ${structure}`\r\n      );\r\n    }\r\n    if (typeof isAiAnnotated !== \"boolean\") {\r\n      throw TypeError(\r\n        `isAiAnnotated must be a boolean, received ${typeof isAiAnnotated}: ${isAiAnnotated}`\r\n      );\r\n    }\r\n    if (!Object.values(ModificationStatus).includes(modificationStatus)) {\r\n      throw TypeError(\r\n        `Invalid modificationStatus, received ${typeof modificationStatus}: ${modificationStatus}`\r\n      );\r\n    }\r\n    if (!isUuid(user)) {\r\n      throw TypeError(\r\n        `user must be a non-nil UUID, received ${typeof user}: ${user}`\r\n      );\r\n    }\r\n\r\n    // Value assignment\r\n    this.id = id;\r\n    this.fileId = fileId;\r\n    this.structure = structure;\r\n    this.isAiAnnotated = isAiAnnotated;\r\n    this.modificationStatus = modificationStatus;\r\n    this.user = user;\r\n  }\r\n}\r\n//#endregion\r\n\r\n//#region ImageRois\r\n/**\r\n * A ROI in an image or video, whose coordinates comply with the GeoJSON standard.\r\n */\r\nexport class ImageRoi extends Roi {\r\n  // Must be updated together with backend\r\n  /**\r\n   * Create an ImageRoi object with all parameters.\r\n   * @param {Guid} id Id of the ROI.\r\n   * @param {Guid} fileId Id of the associated scene.\r\n   * @param {Structure} structure Associated strucuture.\r\n   * @param {bool} isAiAnnotated Whether or not this annotation is AI generated.\r\n   * @param {ModificationStatus} modificationStatus Status of modification of any single annotation. 0: Saved to DB, 1: Added or modified, 2: Deleted\r\n   * @param {Guid} user User that created this annotation.\r\n   * @param {number} z Z-Layer in a z-Stack image.\r\n   * @param {number} t Timeframe in a video.\r\n   * @param {JSON | string} coordinates The coordinates of the polygon, complies with the GeoJSON format. Can be passed as string, will be converted to json.\r\n   * @param {ImageAnnotationType} annotationType Defines the type of annotations.\r\n   * @param {number} minX Optional. Minimum X value of the polygon bounding box.\r\n   * @param {number} minY Optional. Minimum Y value of the polygon bounding box.\r\n   * @param {number} maxX Optional. Maximum X value of the polygon bounding box.\r\n   * @param {number} maxY Optional. Maximum Y value of the polygon bounding box.\r\n   */\r\n  constructor(\r\n    id,\r\n    fileId,\r\n    structure,\r\n    isAiAnnotated,\r\n    user,\r\n    modificationStatus,\r\n    z,\r\n    t,\r\n    coordinates,\r\n    annotationType,\r\n    minX,\r\n    minY,\r\n    maxX,\r\n    maxY\r\n  ) {\r\n    super(id, fileId, structure, isAiAnnotated, modificationStatus, user);\r\n\r\n    // Input validation\r\n    if (!isInt(z) || z < 0) {\r\n      throw TypeError(`z must be an integer >= 0, received ${typeof z}: ${z}`);\r\n    }\r\n    if (!isInt(t) || z < 0) {\r\n      throw TypeError(`t must be an integer >= 0, received ${typeof t}: ${t}`);\r\n    }\r\n    if (typeof coordinates !== \"object\" && typeof coordinates !== \"string\") {\r\n      throw TypeError(\r\n        `Invalid coordinates, received ${typeof coordinates}: ${coordinates}`\r\n      );\r\n    }\r\n    if (!Object.values(ImageAnnotationType).includes(annotationType)) {\r\n      throw TypeError(\r\n        `Invalid annotationType, received ${typeof annotationType}: ${annotationType}`\r\n      );\r\n    }\r\n    if (typeof minX !== \"number\" && minX !== undefined)\r\n      throw TypeError(\r\n        `minX must be a number, received ${typeof minX}: ${minX}`\r\n      );\r\n    if (typeof minY !== \"number\" && minX !== undefined)\r\n      throw TypeError(\r\n        `minY must be a number, received ${typeof minY}: ${minY}`\r\n      );\r\n    if (typeof maxX !== \"number\" && minX !== undefined)\r\n      throw TypeError(\r\n        `maxX must be a number, received ${typeof maxX}: ${maxX}`\r\n      );\r\n    if (typeof maxY !== \"number\" && minX !== undefined)\r\n      throw TypeError(\r\n        `maxY must be a number, received ${typeof maxY}: ${maxY}`\r\n      );\r\n\r\n    // Value assignment\r\n    this.z = z;\r\n    this.t = t;\r\n    this.coordinates =\r\n      typeof coordinates === \"string\" ? JSON.parse(coordinates) : coordinates;\r\n    this.annotationType = annotationType;\r\n\r\n    // Should the values not be passed on, they must be calculated.\r\n    if (minX && minY && maxX && maxY) {\r\n      this.minX = minX;\r\n      this.minY = minY;\r\n      this.maxX = maxX;\r\n      this.maxY = maxY;\r\n    } else {\r\n      // Calculate bounding box\r\n      let rect = calcBoundingBoxFullObject(this.coordinates);\r\n      // Assuming coordinate origin in top left corner\r\n      // . -- x -->\r\n      // |\r\n      // y\r\n      // |\r\n      // V\r\n      this.minX = rect.left;\r\n      this.minY = rect.top;\r\n      this.maxX = rect.right;\r\n      this.maxY = rect.bottom;\r\n    }\r\n  }\r\n\r\n  /**\r\n   * Returns an item that can be added to rTree or rBush.\r\n   * Prevents the need to manually define such a tree item every time.\r\n   * @returns Treeitem with bounding box and reference to roi.\r\n   */\r\n  getTreeItem() {\r\n    return {\r\n      minX: this.minX,\r\n      minY: this.minY,\r\n      maxX: this.maxX,\r\n      maxY: this.maxY,\r\n      roi: this,\r\n    };\r\n  }\r\n\r\n  /**\r\n   * Create a new ImageRoi from an object without needing to define all parameters individually.\r\n   * Accepts camelCase and PascalCase properties, with camelCase being the default.\r\n   * Additional properties will be ignored,\r\n   * missing properties will use defaults or throw error per ImageRoi constructor.\r\n   * @param {object} obj An object containing all necessary properties of a ImageRoi.\r\n   * @returns {ImageRoi} A new ImageRoi.\r\n   */\r\n  static fromObject = (obj) => {\r\n    return new ImageRoi(\r\n      obj.id ?? obj.Id,\r\n      obj.fileId ?? obj.FileId,\r\n      obj.structure ?? obj.Structure,\r\n      obj.isAiAnnotated ?? obj.IsAiAnnotated,\r\n      obj.user ?? obj.User,\r\n      obj.modificationStatus ?? obj.ModificationStatus,\r\n      obj.z ?? obj.Z,\r\n      obj.t ?? obj.T,\r\n      obj.coordinates ?? obj.Coordinates,\r\n      obj.annotationType ?? obj.AnnotationType,\r\n      obj.minX ?? obj.MinX,\r\n      obj.minY ?? obj.MinY,\r\n      obj.maxX ?? obj.MaxX,\r\n      obj.maxY ?? obj.MaxY\r\n    );\r\n  };\r\n}\r\n//#endregion\r\n\r\n//#region AudioRois\r\nexport class AudioRoi extends Roi {\r\n  // Must be updated together with backend\r\n  /**\r\n   * Create a AudioRoi object with all parameters.\r\n   * @param {Guid} id Id of the ROI.\r\n   * @param {Guid} fileId Id of the associated scene.\r\n   * @param {Structure} structure Associated strucuture.\r\n   * @param {bool} isAiAnnotated Whether or not this annotation is AI generated.\r\n   * @param {ModificationStatus} modificationStatus Status of modification of any single annotation.\r\n   * @param {Guid} user User that created this annotation.\r\n   * @param {number} startTime Timestamp of annotation beginning in seconds.\r\n   * @param {number} endTime Timestamp of annotation end in seconds.\r\n   * @param {number} minFreq Minimum frequency of annotation in Hertz.\r\n   * @param {number} maxFreq Maximum frequency of annotation in Hertz.\r\n   * @param {array} channels All channels the annotation is present in.\r\n   */\r\n  constructor(\r\n    id,\r\n    fileId,\r\n    structure,\r\n    isAiAnnotated,\r\n    user,\r\n    modificationStatus,\r\n    startTime,\r\n    endTime,\r\n    minFreq,\r\n    maxFreq,\r\n    channels\r\n  ) {\r\n    super(id, fileId, structure, isAiAnnotated, modificationStatus, user);\r\n\r\n    // Input validation\r\n    if (typeof startTime !== \"number\" || startTime < 0) {\r\n      throw TypeError(\r\n        `startTime must be a number >= 0, received ${typeof startTime}: ${startTime}`\r\n      );\r\n    }\r\n    if (typeof endTime !== \"number\" || endTime < 0) {\r\n      throw TypeError(\r\n        `endTime must be a number >= 0, received ${typeof endTime}: ${endTime}`\r\n      );\r\n    }\r\n    if (typeof minFreq !== \"number\" || minFreq < 0) {\r\n      throw TypeError(\r\n        `minFreq must be a number >= 0, received ${typeof minFreq}: ${minFreq}`\r\n      );\r\n    }\r\n    if (typeof maxFreq !== \"number\" || maxFreq < 0) {\r\n      throw TypeError(\r\n        `maxFreq must be a number >= 0, received ${typeof maxFreq}: ${maxFreq}`\r\n      );\r\n    }\r\n    if (!Array.isArray(channels)) {\r\n      throw TypeError(\r\n        `channels must be an array, received ${typeof channels}: ${channels}`\r\n      );\r\n    }\r\n    channels.forEach((c) => {\r\n      if (!isInt(c) || c < 0) {\r\n        throw TypeError(\r\n          `All channels must be an integer >= 0, received ${typeof c}: ${c}`\r\n        );\r\n      }\r\n    });\r\n\r\n    // Value assignments\r\n    // Ensure startTime comes before endtime\r\n    if (startTime < endTime) {\r\n      this.startTime = startTime;\r\n      this.endTime = endTime;\r\n    } else if (startTime > endTime) {\r\n      // Switch times\r\n      this.startTime = endTime;\r\n      this.endTime = startTime;\r\n    } else {\r\n      // startTime === endTime\r\n      throw new RangeError(\"startTime and endTime must not be identical.\");\r\n    }\r\n\r\n    // Ensure minFreq comes before maxFreq\r\n    if (minFreq < maxFreq) {\r\n      this.minFreq = minFreq;\r\n      this.maxFreq = maxFreq;\r\n    } else if (minFreq > maxFreq) {\r\n      // Switch frequencies\r\n      this.minFreq = maxFreq;\r\n      this.maxFreq = minFreq;\r\n    } else {\r\n      // minFreq === maxFreq\r\n      throw new RangeError(\"minFreq and maxFreq must not be identical.\");\r\n    }\r\n\r\n    this.channels = channels;\r\n  }\r\n\r\n  /**\r\n   * Create a new AudioRoi from an object without needing to define all parameters individually.\r\n   * Accepts camelCase and PascalCase properties, with camelCase being the default.\r\n   * Additional properties will be ignored,\r\n   * missing properties will use defaults or throw error per AudioRoi constructor.\r\n   * @param {object} obj An object containing all necessary properties of a AudioRoi.\r\n   * @returns {AudioRoi} A new AudioRoi.\r\n   */\r\n  static fromObject = (obj) => {\r\n    return new AudioRoi(\r\n      obj.id ?? obj.Id,\r\n      obj.fileId ?? obj.FileId,\r\n      obj.structure ?? obj.Structure,\r\n      obj.isAiAnnotated ?? obj.IsAiAnnotated,\r\n      obj.user ?? obj.User,\r\n      obj.modificationStatus ?? obj.ModificationStatus,\r\n      obj.startTime ?? obj.StartTime,\r\n      obj.endTime ?? obj.EndTime,\r\n      obj.minFreq ?? obj.MinFreq,\r\n      obj.maxFreq ?? obj.MaxFreq,\r\n      obj.channels ?? obj.Channels\r\n    );\r\n  };\r\n}\r\n\r\n//#endregion\r\n","import { authenticationService } from \"../services\";\r\n\r\nimport { HubConnectionBuilder, LogLevel } from \"@aspnet/signalr\";\r\nimport { v4 as uuidv4 } from \"uuid\";\r\nimport { io } from \"socket.io-client\";\r\nimport {\r\n  convertDateToDayString,\r\n  convertDateToShortIsoString,\r\n} from \"../../common/utils/Localization\";\r\nimport {\r\n  ModificationStatus,\r\n  RoiType,\r\n  ImageRoi,\r\n  AudioRoi,\r\n} from \"../components/RoiTypes\";\r\nimport Structure from \"../components/Structure\";\r\n\r\nconst DEFAULT_PORT = 8051;\r\nconst SERVER_URL = `http://127.0.0.1:${DEFAULT_PORT}`;\r\n\r\nlet jobProgressConnection = new HubConnectionBuilder()\r\n  .withUrl(\"/jobprogress\")\r\n  .configureLogging(LogLevel.Warning)\r\n  .build();\r\njobProgressConnection.serverTimeoutInMilliseconds = 5_000 * 1_000; // 50000 second\r\njobProgressConnection.keepAliveIntervalInMilliseconds = 5_000 * 1_000; // 50000 second\r\n\r\n/**\r\n * injects authorization header into the fetch() function\r\n * @param {String} url backend endpoint\r\n * @param {Object} config additional stuff https://developer.mozilla.org/de/docs/Web/API/Fetch_API/Using_Fetch\r\n * @returns {Promise} result of fetch function\r\n */\r\nfunction fetch_auth(url, config = {}) {\r\n  // return authorization header with jwt token\r\n  const currentUser = authenticationService.currentUserValue;\r\n  if (currentUser && currentUser.token) {\r\n    if (!config.headers) config.headers = {};\r\n\r\n    // place bearer token\r\n    config.headers.Authorization = `Bearer ${currentUser.token}`;\r\n  }\r\n  return fetch(url, config);\r\n}\r\n\r\nfunction validateResponse(response, permissionString) {\r\n  if (response.status === 403) {\r\n    window.showErrorSnackbar(\r\n      \"Current user has no permission to \" + permissionString + \"!\"\r\n    );\r\n    return { success: false, status: response.status };\r\n  } else {\r\n    return response.json();\r\n  }\r\n}\r\n\r\nfunction validateResponseJSON(json, callback) {\r\n  if (json.success === false && json.message !== \"\") {\r\n    window.showErrorSnackbar(json.message);\r\n  }\r\n  callback(json);\r\n}\r\n\r\nfunction showHandledProblems(response, errorMessage) {\r\n  if (response.permissionDenied === true) {\r\n    window.showErrorSnackbar(errorMessage);\r\n  }\r\n  if (typeof response.errorMessage === \"string\" && window.openErrorDialog) {\r\n    window.openErrorDialog(response.errorMessage);\r\n  }\r\n  return response;\r\n}\r\n\r\nfunction customErrorPrint(errorName, error) {\r\n  if (error === \"SyntaxError: Unexpected token < in JSON at position 0\") {\r\n    console.log(\"Backend could not be connected!\");\r\n  } else {\r\n    console.log(\"Backend Error in\", errorName, error);\r\n  }\r\n}\r\n\r\n/**\r\n * Default handeling on a successfully parsed json response that returns an \"error\" key to report errors.\r\n * @param {JSON} res Parsed json object from response.\r\n * @param {Function} callback The function to call to handle a successful request.\r\n * @param {Function} error Optional. The function to call on any error.\r\n */\r\nfunction handleJsonResponse(res, callback, error = () => {}) {\r\n  if (res.error) {\r\n    console.error(error);\r\n    error(res.error);\r\n  } else {\r\n    callback(res);\r\n  }\r\n}\r\n\r\nexport default class Backend {\r\n  static createUser(user, callback) {\r\n    fetch_auth(`/api/admin/createuser`, {\r\n      method: \"POST\",\r\n      headers: { \"Content-Type\": \"application/json\" },\r\n      body: JSON.stringify(user),\r\n    })\r\n      .then((response) => response.json())\r\n      .then(callback);\r\n  }\r\n  static deleteUser(id, callback) {\r\n    fetch_auth(`/api/admin/deleteuser`, {\r\n      method: \"POST\",\r\n      headers: { \"Content-Type\": \"application/json\" },\r\n      body: JSON.stringify(id),\r\n    })\r\n      .then((response) => response.json())\r\n      .then(callback);\r\n  }\r\n  static updateUser(user, callback) {\r\n    fetch_auth(`/api/admin/updateuser`, {\r\n      method: \"POST\",\r\n      headers: { \"Content-Type\": \"application/json\" },\r\n      body: JSON.stringify(user),\r\n    })\r\n      .then((response) => response.json())\r\n      .then(callback);\r\n  }\r\n  static loadUserList(callback) {\r\n    fetch_auth(`/api/admin/userlist`)\r\n      .then((response) => response.json())\r\n      .then(callback);\r\n  }\r\n\r\n  static loadGroupList(callback) {\r\n    fetch_auth(`/api/admin/grouplist`)\r\n      .then((response) => response.json())\r\n      .then(callback);\r\n  }\r\n  static createGroup(group, callback) {\r\n    fetch_auth(`/api/admin/createGroup`, {\r\n      method: \"POST\",\r\n      headers: { \"Content-Type\": \"application/json\" },\r\n      body: JSON.stringify(group),\r\n    })\r\n      .then((response) => response.json())\r\n      .then(callback);\r\n  }\r\n  static updateGroup(group, callback) {\r\n    fetch_auth(`/api/admin/updateGroup`, {\r\n      method: \"POST\",\r\n      headers: { \"Content-Type\": \"application/json\" },\r\n      body: JSON.stringify(group),\r\n    })\r\n      .then((response) => validateResponse(response, \"edit groups\"))\r\n      .then(callback);\r\n  }\r\n  static updateUserGroups(userId, userGroups, callback) {\r\n    fetch_auth(`/api/admin/updateUserGroups?id=` + userId, {\r\n      method: \"POST\",\r\n      headers: { \"Content-Type\": \"application/json\" },\r\n      body: JSON.stringify(userGroups),\r\n    })\r\n      .then((response) => validateResponse(response, \"edit groups\"))\r\n      .then((json) => validateResponseJSON(json, callback));\r\n  }\r\n  static deleteGroup(id, callback) {\r\n    fetch_auth(`/api/admin/deleteGroup`, {\r\n      method: \"POST\",\r\n      headers: { \"Content-Type\": \"application/json\" },\r\n      body: JSON.stringify(id),\r\n    })\r\n      .then((response) => validateResponse(response, \"edit groups\"))\r\n      .then(callback);\r\n  }\r\n\r\n  /**\r\n   * load list of groups of given user\r\n   * @param {Function} callback Success callback\r\n   */\r\n  static getUserGroups(id, callback) {\r\n    fetch_auth(`/api/project/getUserGroups?id=` + id)\r\n      .then((response) => response.json())\r\n      .then(callback);\r\n  }\r\n\r\n  /**\r\n   * load list of groups of logged in user\r\n   * @param {Function} callback Success callback\r\n   */\r\n  static getCurrentUserGroups(callback) {\r\n    fetch_auth(`/api/project/getCurrentUserGroups`)\r\n      .then((response) => {\r\n        if (response.status === 204 || response.status === 401) {\r\n          authenticationService.logout();\r\n          window.location.reload(true); //clear cache\r\n        }\r\n        return response.json();\r\n      })\r\n      .then(callback);\r\n  }\r\n\r\n  /**\r\n   * loads version and release notes\r\n   * @param {Function} callback Success callback\r\n   */\r\n  static getAbout(callback) {\r\n    fetch_auth(`/api/about/about`)\r\n      .then((response) => response.json())\r\n      .then(callback);\r\n  }\r\n\r\n  /**\r\n   * loads version code\r\n   * @param {Function} callback Success callback\r\n   */\r\n  static getVersion(callback) {\r\n    fetch_auth(`/api/about/version`)\r\n      .then((response) => response.json())\r\n      .then(callback)\r\n      .catch((error) => customErrorPrint(\"getVersion\", error));\r\n  }\r\n\r\n  /**\r\n   * loads system configuration from appsettings.json\r\n   * @param {Function} callback Success callback with ome data model\r\n   */\r\n  static readAppSettings() {\r\n    return fetch_auth(`/api/admin/appsettings`)\r\n      .then((response) => response.json())\r\n      .catch((error) => console.log(error));\r\n  }\r\n\r\n  /**\r\n   * writes system configuration from appsettings.json\r\n   * @param {Object} appsettings Appsettings Dictionary\r\n   * @param {Function} callback Success callback with ome data model\r\n   */\r\n  static writeAppSettings(appsettings, callback) {\r\n    fetch_auth(`/api/admin/appsettings`, {\r\n      method: \"POST\",\r\n      headers: { \"Content-Type\": \"application/json\" },\r\n      body: JSON.stringify(appsettings),\r\n    })\r\n      .then((response) => response.json())\r\n      .then(callback);\r\n  }\r\n\r\n  /**\r\n   * checks, the changes for the case settings to show in frontend in dialog\r\n   * @param {Object} appsettings Appsettings Dictionary\r\n   * @param {Function} callback Success callback with ome data model\r\n   */\r\n  static getPossibleCaseSettingsChanges(appsettings, callback) {\r\n    fetch_auth(`/api/admin/check_update_case_settings`, {\r\n      method: \"POST\",\r\n      headers: { \"Content-Type\": \"application/json\" },\r\n      body: JSON.stringify(appsettings),\r\n    })\r\n      .then((response) => response.json())\r\n      .then(callback);\r\n  }\r\n\r\n  /**\r\n   * loads system configuration from appsettings.json\r\n   * @param {Function} callback Success callback with ome data model\r\n   */\r\n  static readAppSettingsLicensing(callback) {\r\n    fetch_auth(`/api/about/appsettingslicensing`)\r\n      .then((response) => response.json())\r\n      .then(callback);\r\n  }\r\n\r\n  /**\r\n   * writes system configuration from appsettings.json\r\n   * @param {Object} appsettings Appsettings Dictionary\r\n   * @param {Function} callback Success callback with ome data model\r\n   */\r\n  static writeAppSettingsLicensing(appsettings, callback) {\r\n    fetch_auth(`/api/about/appsettingslicensing`, {\r\n      method: \"POST\",\r\n      headers: { \"Content-Type\": \"application/json\" },\r\n      body: JSON.stringify(appsettings),\r\n    })\r\n      .then((response) => response.json())\r\n      .then(callback);\r\n  }\r\n\r\n  /**\r\n   * loads system configuration from appsettings.json\r\n   * @param {Function} callback Success callback with ome data model\r\n   */\r\n  static readImporterSettings(callback) {\r\n    fetch_auth(`/api/admin/importsettings`)\r\n      .then((response) => response.json())\r\n      .then(callback);\r\n  }\r\n\r\n  /**\r\n   * writes system configuration from appsettings.json\r\n   * @param {Object} appsettings Appsettings Dictionary\r\n   * @param {Function} callback Success callback with ome data model\r\n   */\r\n  static writeImporterSettings(appsettings, callback) {\r\n    fetch_auth(`/api/admin/importsettings`, {\r\n      method: \"POST\",\r\n      headers: { \"Content-Type\": \"application/json\" },\r\n      body: JSON.stringify(appsettings),\r\n    })\r\n      .then((response) => response.json())\r\n      .then(callback);\r\n  }\r\n\r\n  /**\r\n   * Deletes {../TEMP/files}-folder.\r\n   * @param {Function} callback function after the deletion is done\r\n   */\r\n  static deleteTempFiles(callback) {\r\n    fetch_auth(`/api/admin/delete_temp_files`)\r\n      .then((response) => response.json())\r\n      .then(callback);\r\n  }\r\n\r\n  /**\r\n   * Runs a instant analysis tool with real time updates using signalR\r\n   * @param {Object} data Instant analysis configuration\r\n   * @param {Function} callback Success callback\r\n   * @param {Function} errorCallback Error callback\r\n   * @param {Function} progressCallback Progress callback\r\n   */\r\n  static loadImage(params, callback, errorCallback, progressCallback) {\r\n    //console.debug(JSON.stringify(data));\r\n    const jobId = \"_\" + Math.random().toString(36).substr(2, 9);\r\n\r\n    let connection = new HubConnectionBuilder()\r\n      .withUrl(\"/jobprogress\")\r\n      .configureLogging(LogLevel.Warning)\r\n      .build();\r\n    connection.serverTimeoutInMilliseconds = 5000000; // 5000 second\r\n    connection.on(\"Progress\", (line) => {\r\n      if (line) {\r\n        progressCallback(line);\r\n      }\r\n    });\r\n    connection.on(\"StandardOutput\", (line) => {\r\n      // output debug prints of python module\r\n      if (line) {\r\n        console.debug(line);\r\n      }\r\n    });\r\n    connection.on(\"Error\", (line) => {\r\n      // output debug prints of python module\r\n      if (line) {\r\n        console.error(line);\r\n      }\r\n    });\r\n\r\n    connection\r\n      .start()\r\n      .then(() => connection.invoke(\"AssociateJob\", jobId))\r\n      .catch((err) => console.error(err.toString()));\r\n\r\n    fetch_auth(`/api/rendering/load_image?id=${params.id}&jobId=${jobId}`)\r\n      .then((response) => response.json())\r\n      .then((res) => {\r\n        res.error ? errorCallback(res.error) : callback(res);\r\n      })\r\n      .catch((error) => {\r\n        errorCallback(error);\r\n      });\r\n  }\r\n\r\n  /**\r\n   * Request a project, before actually loading it.\r\n   * Allows to check if the project is available and to inject further actions if not.\r\n   * @param {uuidv4} id The id of the project to request.\r\n   * @param {Function} callback The function to call to handle a successful request.\r\n   * @param {Function} error Optional. The function to call on any error.\r\n   */\r\n  static async requestProject(id, callback, error = () => {}) {\r\n    fetch_auth(`/api/project/request?id=${id}`, {\r\n      method: \"GET\",\r\n    })\r\n      .then((response) => {\r\n        if (response.ok) {\r\n          return response.json();\r\n        }\r\n        throw new Error(`Error loading exported projects`);\r\n      })\r\n      .then((res) => handleJsonResponse(res, callback, error))\r\n      .catch((err) => {\r\n        console.error(err);\r\n        error(err);\r\n      });\r\n  }\r\n\r\n  /**\r\n   * Load project meta data from backend.\r\n   * @param {Object} params object containing project id {id: GUID}.\r\n   * @param {Function} callback Success callback with project model object as parameter.\r\n   * @param {Function} error Error handeling function\r\n   */\r\n  static loadProject(params, callback, error = (err) => console.error(err)) {\r\n    fetch_auth(`/api/project/get?id=${params.id}`)\r\n      .then((response) => {\r\n        if (response.ok) {\r\n          return response.json();\r\n        }\r\n        throw new Error(`Error loading project ${params.id}!`);\r\n      })\r\n      .then(callback)\r\n      .catch((err) => error(err));\r\n  }\r\n\r\n  /**\r\n   * Clean up and close database after closing a project.\r\n   * @param {uuid} projectId Id of the closed project.\r\n   * @param {function} callback Function to call upon success.\r\n   * @param {function} error Function to call upon error.\r\n   */\r\n  static closeProject = (projectId, callback, error) => {\r\n    fetch_auth(`/api/project/close?projectId=${projectId}`)\r\n      .then((res) => {\r\n        return res.json();\r\n      })\r\n      .then((res) =>\r\n        res.error\r\n          ? error(`Error closing project ${projectId}:\\n\\n ${res.error}`)\r\n          : callback(res)\r\n      )\r\n      .catch((err) =>\r\n        error(`Error parsing response, actions failed:\\n\\n ${err}`)\r\n      );\r\n  };\r\n\r\n  /**\r\n   * load file annotations data from Backend\r\n   * @param {Object} params object with project id\r\n   * @param {Function} callback Success callback with project model object as parameter\r\n   */\r\n  static async loadAnnotations(params, queryOptions) {\r\n    return fetch_auth(\r\n      `/api/project/get_annotations?id=${params.id}&fileId=${params.fileId}`,\r\n      {\r\n        method: \"POST\",\r\n        headers: { \"Content-Type\": \"application/json\" },\r\n        body: JSON.stringify(queryOptions),\r\n      }\r\n    ).then(async (response) => {\r\n      const r = await response.json();\r\n      if (response.status === 200) return r;\r\n      if (response.status === 400) {\r\n        window.showErrorSnackbar(\"Access to the path is denied.\");\r\n        return null;\r\n      }\r\n    });\r\n  }\r\n\r\n  /**\r\n   * Init Annotations DB\r\n   * @param {UUID} projectId The id of the project to load annotations from.\r\n   * @param {RoiType} roiType Type of rois to load.\r\n   * @param {function} callback Function to execute on success.\r\n   * @param {function} error Function to execute on error.\r\n   */\r\n  static initAnnotationsFromDB(projectId, roiType, callback, error) {\r\n    const start = performance.now();\r\n    if (!projectId) {\r\n      throw new Error(\"Missing project id, which is required.\");\r\n    }\r\n    if (!Object.values(RoiType).includes(roiType)) {\r\n      throw TypeError(`Invalid roiType ${roiType}.`);\r\n    }\r\n    // Perform the request\r\n    fetch_auth(\r\n      `api/project/init_annotations_db?projectId=${projectId}&roiType=${roiType}`,\r\n      {\r\n        method: \"GET\",\r\n      }\r\n    )\r\n      .then((response) => {\r\n        if (response.ok) {\r\n          // TODO: Implement byte[] decoding\r\n          return response.json();\r\n        } else {\r\n          return response.json();\r\n        }\r\n      })\r\n      .then((res) => {\r\n        if (res?.error) {\r\n          error(`Error loading annotations:\\n${res.error}`);\r\n        } else {\r\n          const end = performance.now();\r\n          const timeInSeconds = (end - start) / 1000;\r\n          res.time = timeInSeconds;\r\n          callback();\r\n        }\r\n      })\r\n      .catch((err) =>\r\n        error(`Error initializing annotations database:\\n${err}`)\r\n      );\r\n  }\r\n\r\n  /**\r\n   * Load annotations from backend database.\r\n   * @param {UUID} projectId The id of the project to load annotations from.\r\n   * @param {RoiType} roiType Type of rois to load.\r\n   * @param {object} searchOptions Options to narrow down the rois to look for. Must consist of at minimum of fileId.\r\n   * @param {function} callback Function to execute on success.\r\n   * @param {function} error Function to execute on error.\r\n   */\r\n  static loadAnnotationsFromDB(\r\n    projectId,\r\n    roiType,\r\n    searchOptions,\r\n    callback,\r\n    error\r\n  ) {\r\n    try {\r\n      if (!projectId) {\r\n        throw new Error(\"Missing project id, which is required.\");\r\n      }\r\n      if (!Object.values(RoiType).includes(roiType)) {\r\n        throw TypeError(`Invalid roiType ${roiType}.`);\r\n      }\r\n      if (!searchOptions) {\r\n        throw new Error(\r\n          \"Missing search options, must consist at minimum of fileId.\"\r\n        );\r\n      }\r\n      if (!searchOptions.fileId) {\r\n        throw new Error(\"Missing file id, which is required.\");\r\n      }\r\n    } catch (err) {\r\n      console.error(\r\n        \"An error occured fetching the annotaions form the database:\\n\",\r\n        err\r\n      );\r\n      error(err);\r\n      return;\r\n    }\r\n\r\n    // Perform the request\r\n    fetch_auth(\r\n      `api/project/get_annotations_from_db?projectId=${projectId}&roiType=${roiType}`,\r\n      {\r\n        method: \"POST\",\r\n        headers: { \"Content-Type\": \"application/json\" },\r\n        body: JSON.stringify(searchOptions),\r\n      }\r\n    )\r\n      .then((response) => {\r\n        if (response.ok) {\r\n          // TODO: Implement byte[] decoding\r\n          return response.json();\r\n        } else {\r\n          return response.json();\r\n        }\r\n      })\r\n      .then((res) => {\r\n        if (res?.error) {\r\n          error(`Error loading annotations:\\n${res.error}`);\r\n        } else {\r\n          // Map rois to their respective types\r\n          switch (roiType) {\r\n            case RoiType.ImageRoi:\r\n              res = res.map(\r\n                (incomingRoi) => new ImageRoi.fromObject(incomingRoi)\r\n              );\r\n              break;\r\n\r\n            case RoiType.AudioRoi:\r\n              res = res.map(\r\n                (incomingRoi) => new AudioRoi.fromObject(incomingRoi)\r\n              );\r\n              break;\r\n\r\n            default:\r\n              throw TypeError(`Cannot conver to invalid roiType ${roiType}.`);\r\n          }\r\n          callback(res);\r\n        }\r\n      })\r\n      .catch((err) => error(`Error loading annotations:\\n${err}`));\r\n  }\r\n\r\n  /**\r\n   * load file annotations data from Backend\r\n   * @param {Object} params object with project id\r\n   * @param {Function} callback Success callback with project model object as parameter\r\n   */\r\n  static loadAnnotationsObject(params, callback) {\r\n    fetch_auth(\r\n      `/api/project/get_annotations_object?id=${params.id}&fileId=${params.fileId}`\r\n    )\r\n      .then((response) => response.json())\r\n      .then(callback);\r\n  }\r\n\r\n  static exportGallery(id, fileId, callback) {\r\n    fetch_auth(`/api/project/export_gallery?id=${id}&fileId=${fileId}`, {\r\n      method: \"POST\",\r\n    })\r\n      .then((response) => response.json())\r\n      .then(callback);\r\n  }\r\n\r\n  /**\r\n   * Get all model inforamtion from both local as well as optionally from online sources.\r\n   * The respose will be parsed and the models passed to callback as json.\r\n   * @param {String} model_path \"hsa_models\".\r\n   * @param {Bool} online Should models be donwloaded from the HSA online server. Defaults to false.\r\n   * @param {Function} callback Function executed after response is received.\r\n   */\r\n  static getModelMetadata(model_path, online = false, callback) {\r\n    fetch_auth(\r\n      `/api/project/get_model_metadata?model_path=${model_path}&online=${online}`,\r\n      {\r\n        method: \"GET\",\r\n      }\r\n    )\r\n      .then((response) => {\r\n        if (!response.ok) {\r\n          console.log(`Received status code: ${response.status}`);\r\n          throw new Error(\r\n            `Network response was not ok, status: ${response.status}`\r\n          );\r\n        }\r\n        return response.json();\r\n      })\r\n      .then((result) => {\r\n        const callbackInput = {\r\n          models: JSON.parse(result.models),\r\n          newModels: JSON.parse(result.new_model),\r\n        };\r\n        callback(callbackInput);\r\n\r\n        // In case of models that could not be loaded\r\n        if (result.unlistedModels !== \"[]\") {\r\n          const unlistedModels = JSON.parse(result.unlistedModels);\r\n          console.warn(\r\n            \"Not all models are displayed, missing models are:\\n\",\r\n            unlistedModels\r\n          );\r\n          const modelErrs = unlistedModels.map(\r\n            (model) => `\\n${model.name} - ${model.version}: \\t${model.shortErr}`\r\n          );\r\n          window.openErrorDialog(\r\n            `Not all models could be loaded, missing models are:${modelErrs}\\n\\nFor further information see console.`\r\n          );\r\n        }\r\n      })\r\n      .catch((error) => {\r\n        console.error(\"There was an error!\", error);\r\n      });\r\n  }\r\n\r\n  /**\r\n   * Pre-load python modules in backend to save loading times when actually needed.\r\n   */\r\n  static initPythonModules() {\r\n    fetch_auth(`/api/project/init_python_modules`, {\r\n      method: \"POST\",\r\n    });\r\n  }\r\n\r\n  /**\r\n   * List all projects of the logged in user\r\n   * @param {Function} callback Success callback with list as parameter\r\n   */\r\n  static listProjects(callback) {\r\n    try {\r\n      fetch_auth(\"/api/project/list\")\r\n        .then((response) => {\r\n          if (response.status === 401) {\r\n            console.log(\"not authenticated => logout\");\r\n            authenticationService.logout();\r\n            return;\r\n          }\r\n          return response.json();\r\n        })\r\n        .then(callback)\r\n        .catch((error) => {\r\n          console.log(error);\r\n        });\r\n    } catch (ex) {\r\n      console.log(\"error:\", ex);\r\n    }\r\n  }\r\n\r\n  /**\r\n   * List all cases of the logged in user\r\n   * @param {Function} callback Success callback with list as parameter\r\n   */\r\n  static async listCases() {\r\n    return fetch_auth(\"/api/cases/list\").then((response) => {\r\n      if (response.status === 401) {\r\n        console.log(\"not authenticated => logout\");\r\n        authenticationService.logout();\r\n        return;\r\n      }\r\n      return response.json();\r\n    });\r\n  }\r\n\r\n  /**\r\n   * Delete a specific case of the logged in user\r\n   * @param {string} caseId ID of the case to delete\r\n   */\r\n  static async deleteCase(caseId) {\r\n    return fetch_auth(`/api/cases/delete/${caseId}`, { method: \"DELETE\" }).then(\r\n      (response) => {\r\n        if (response.status === 401) {\r\n          console.log(\"not authenticated => logout\");\r\n          authenticationService.logout();\r\n          return;\r\n        }\r\n        return response.json();\r\n      }\r\n    );\r\n  }\r\n\r\n  /*\r\n   * Get message from one project\r\n   * @param {String} id\r\n   * @returns Promise\r\n   */\r\n  static loadProjectMessage(id) {\r\n    return fetch_auth(`/api/project/get_message?id=${id}`).then((response) =>\r\n      response.json()\r\n    );\r\n  }\r\n\r\n  /**\r\n   * Creates a new project in database based on the chosen template\r\n   * @param {Object} data Project creation model\r\n   * @param {Function} callback Success callback\r\n   */\r\n  static createProject(data, callback) {\r\n    fetch_auth(`/api/project/create`, {\r\n      method: \"POST\",\r\n      headers: { \"Content-Type\": \"application/json\" },\r\n      body: JSON.stringify(data),\r\n    })\r\n      .then((response) => response.json())\r\n      .then((data) => {\r\n        callback(data);\r\n      });\r\n  }\r\n\r\n  /**\r\n   * Creates a new case in database\r\n   *\r\n   * @param {Object} data - Object with 2 arrays: caseColumns to create 1 case and files for the case files\r\n   * @returns {Promise} - Resolves with responseData or rejects with error\r\n   */\r\n  static async createCase(data) {\r\n    try {\r\n      const response = await fetch_auth(\"/api/cases/create\", {\r\n        method: \"POST\",\r\n        headers: { \"Content-Type\": \"application/json\" },\r\n        body: JSON.stringify(data),\r\n      });\r\n      const { data: responseData } = await response.json();\r\n      return Promise.resolve(responseData);\r\n    } catch (error) {\r\n      console.error(error);\r\n      return Promise.reject(error);\r\n    }\r\n  }\r\n\r\n  /**\r\n   * Updates an existing case in the database based on ID\r\n   *\r\n   * @param {string} id - ID of the case to update\r\n   * @param {Object} data - Object with 1 array: caseColumns to update 1 case\r\n   * @returns {Promise} - Resolves with responseData or rejects with error\r\n   */\r\n  static async editCase(id, data) {\r\n    try {\r\n      const response = await fetch_auth(`/api/cases/edit/${id}`, {\r\n        method: \"PUT\",\r\n        headers: { \"Content-Type\": \"application/json\" },\r\n        body: JSON.stringify(data),\r\n      });\r\n      return Promise.resolve(response);\r\n    } catch (error) {\r\n      console.error(error);\r\n      return Promise.reject(error);\r\n    }\r\n  }\r\n\r\n  /**\r\n   * Export Projects\r\n   * @param {String[]} projectIds\r\n   * @param {Function} callback\r\n   */\r\n  static exportProjects(projectIds, exportName, callback) {\r\n    fetch_auth(`/api/project/export`, {\r\n      method: \"POST\",\r\n      headers: { \"Content-Type\": \"application/json\" },\r\n      body: JSON.stringify(projectIds),\r\n    })\r\n      .then((response) => response.blob())\r\n      .then((blob) => {\r\n        var url = window.URL.createObjectURL(blob);\r\n        var a = document.createElement(\"a\");\r\n        a.href = url;\r\n        a.download = exportName + \".hsa\";\r\n        document.body.appendChild(a); // we need to append the element to the dom -> otherwise it will not work in firefox\r\n        a.click();\r\n        a.remove(); //afterwards we remove the element again\r\n        callback();\r\n      });\r\n  }\r\n\r\n  /**\r\n   * Import exported projects.\r\n   * @param {FormFile} file The file to import projects from.\r\n   * @param {Function} callback The function to call to handle a successful request.\r\n   * @param {Function} error Optional. The function to call on any error.\r\n   */\r\n  static importProjects(file, callback, error = () => {}) {\r\n    var data = new FormData();\r\n    data.append(\"file\", file);\r\n\r\n    fetch_auth(`/api/project/import`, {\r\n      method: \"POST\",\r\n      body: data,\r\n    })\r\n      .then((response) => {\r\n        if (response.ok) {\r\n          return response.json();\r\n        }\r\n        throw new Error(`Error loading exported projects`);\r\n      })\r\n      .then((res) => handleJsonResponse(res, callback, error))\r\n      .catch((err) => {\r\n        console.error(err);\r\n        error(err);\r\n      });\r\n  }\r\n\r\n  /**\r\n   * Checks new or edited proposed file mappings for validity in Backend.\r\n   * @param {Tuple(Array, Array)} formData Tuple with list of all projects to import and list of all proposed file mappings.\r\n   * @param {String} projectActionMode The action to perform on the projects. Must be a valid value of ProjectActionMode.\r\n   * @param {Function} callback The function to call to handle a successful request. Receives {object} Response.\r\n   * @param {Function} error Optional. The function to call on any error. Receives {string} Error.\r\n   */\r\n  static checkFileMappings(\r\n    formData,\r\n    projectActionMode,\r\n    callback,\r\n    error = () => {}\r\n  ) {\r\n    fetch_auth(`/api/project/checkFileMappings?mode=${projectActionMode}`, {\r\n      method: \"POST\",\r\n      headers: { \"Content-Type\": \"application/json\" },\r\n      body: JSON.stringify(formData),\r\n    })\r\n      .then((response) => {\r\n        if (response.ok) {\r\n          return response.json();\r\n        }\r\n        const projectCount = formData.projects.length;\r\n        throw new Error(\r\n          `Error importing ${projectCount} ${\r\n            projectCount === 1 ? \"project\" : \"projects\"\r\n          }`\r\n        );\r\n      })\r\n      .then((res) => handleJsonResponse(res, callback, error))\r\n      .catch((err) => {\r\n        console.error(err);\r\n        error(err.message);\r\n      });\r\n  }\r\n\r\n  /**\r\n   * Export an AI model to a .modelhsa file and triggers its download.\r\n   * @param {Object} aiModel The model to export.\r\n   * @param {Function} callback What to\r\n   */\r\n  static exportAIModel(aiModel, callback) {\r\n    fetch_auth(`/api/project/export_ai_model`, {\r\n      method: \"POST\",\r\n      headers: { \"Content-Type\": \"application/json\" },\r\n      body: JSON.stringify(aiModel),\r\n    })\r\n      .then((response) => {\r\n        if (response.ok) {\r\n          callback(response);\r\n          return response.blob();\r\n        } else {\r\n          callback(response);\r\n          window.showErrorSnackbar(\"No permission to export models!\");\r\n          return null;\r\n        }\r\n      })\r\n      .then((blob) => {\r\n        if (blob !== null) {\r\n          var url = window.URL.createObjectURL(blob);\r\n          var a = document.createElement(\"a\");\r\n          a.href = url;\r\n          a.download = JSON.parse(aiModel)[\"Name\"] + \".modelhsa\";\r\n          document.body.appendChild(a); // we need to append the element to the dom -> otherwise it will not work in firefox\r\n          a.click();\r\n          a.remove(); //afterwards we remove the element again\r\n        }\r\n      });\r\n  }\r\n\r\n  /**\r\n   * Export an AI model dataset to a .hsa file and triggers its download.\r\n   * @param {Object} aiModel The model to export.\r\n   * @param {Function} callback What to\r\n   */\r\n  static exportAIModelDataset(aiModel, callback) {\r\n    fetch_auth(`/api/project/export_ai_model_dataset`, {\r\n      method: \"POST\",\r\n      headers: { \"Content-Type\": \"application/json\" },\r\n      body: JSON.stringify(aiModel),\r\n    })\r\n      .then((response) => {\r\n        if (response.ok) {\r\n          callback(response);\r\n          return response.blob();\r\n        } else {\r\n          callback(response);\r\n          window.showErrorSnackbar(\"No permission to export models!\");\r\n          return null;\r\n        }\r\n      })\r\n      .then((blob) => {\r\n        if (blob !== null) {\r\n          var url = window.URL.createObjectURL(blob);\r\n          var a = document.createElement(\"a\");\r\n          a.href = url;\r\n          a.download = JSON.parse(aiModel)[\"Name\"] + \"_dataset_project.hsa\";\r\n          document.body.appendChild(a); // we need to append the element to the dom -> otherwise it will not work in firefox\r\n          a.click();\r\n          a.remove(); //afterwards we remove the element again\r\n        }\r\n      });\r\n  }\r\n\r\n  /**\r\n   * Deletes selected Custom AI Model\r\n   * @param {*} selectedAIModel\r\n   * @param {*} callback\r\n   */\r\n  static deleteAIModel(aiModel, callback) {\r\n    fetch_auth(`/api/ai/delete_models`, {\r\n      method: \"POST\",\r\n      headers: { \"Content-Type\": \"application/json\" },\r\n      body: JSON.stringify(aiModel),\r\n    })\r\n      .then((response) => response.json())\r\n      .then((json) => {\r\n        // success\r\n        callback(json);\r\n      });\r\n  }\r\n\r\n  /**\r\n   * Imports Exported AI Models\r\n   * @param {FormFile} file\r\n   * @param {Function} callback\r\n   */\r\n  static importAIModels(file, callback) {\r\n    var data = new FormData();\r\n    data.append(\"file\", file);\r\n\r\n    fetch_auth(`/api/project/import_ai_model`, {\r\n      method: \"POST\",\r\n      body: data,\r\n    })\r\n      .then((response) => response.json())\r\n      .then((res) =>\r\n        showHandledProblems(res, \"No permission to import models!\")\r\n      )\r\n      .then((res) => callback(res));\r\n  }\r\n\r\n  /**\r\n   * Exports (starts download) multiple project modules as zip file\r\n   * @param {String[]} names\r\n   * @param {Function} callback\r\n   */\r\n  static exportProjectTypes(names, output_name, callback) {\r\n    fetch_auth(`/api/project/export_project_module_types`, {\r\n      method: \"POST\",\r\n      headers: { \"Content-Type\": \"application/json\" },\r\n      body: JSON.stringify(names),\r\n    })\r\n      .then((response) => response.blob())\r\n      .then((blob) => {\r\n        var url = window.URL.createObjectURL(blob);\r\n        var a = document.createElement(\"a\");\r\n        a.href = url;\r\n        a.download = output_name + \".zip\";\r\n        document.body.appendChild(a); // we need to append the element to the dom -> otherwise it will not work in firefox\r\n        a.click();\r\n        a.remove(); //afterwards we remove the element again\r\n        callback(\"success\");\r\n      });\r\n  }\r\n\r\n  /**\r\n   * Create Project Module Preview Image\r\n   * @param {String} name\r\n   * @param {String} projectJson\r\n   * @param {Function} callback\r\n   */\r\n  static createProjectModuleTypeJsonFile(name, projectJson, callback) {\r\n    fetch_auth(`/api/project/create_project_module_type_json?name=${name}`, {\r\n      method: \"POST\",\r\n      headers: { \"Content-Type\": \"application/json\" },\r\n      body: JSON.stringify(projectJson),\r\n    })\r\n      .then((response) => response.json())\r\n      .then((res) =>\r\n        showHandledProblems(res, \"No permission to create project modules!\")\r\n      )\r\n      .then((res) => callback(res));\r\n  }\r\n\r\n  /**\r\n   * Create Project Module Preview Image\r\n   * @param {String} name\r\n   * @param {FormFile} img\r\n   * @param {Function} callback\r\n   */\r\n  static createProjectModuleTypeImage(name, img, callback) {\r\n    console.log(\"createProjectModuleTypeImage()\");\r\n    let data = new FormData();\r\n    data.append(\"file\", img);\r\n\r\n    fetch_auth(`/api/project/create_project_module_type_image?name=${name}`, {\r\n      method: \"POST\",\r\n      body: data,\r\n    })\r\n      .then((response) => response.json())\r\n      .then((res) =>\r\n        showHandledProblems(res, \"No permission to create project modules!\")\r\n      )\r\n      .then((res) => callback(res));\r\n  }\r\n\r\n  /**\r\n   * Save screenshot in slides sub folder\r\n   * @param {String} name\r\n   * @param {FormFile} img\r\n   * @param {Function} callback\r\n   */\r\n  static saveScreenshot(folderPath, fileName, img, callback) {\r\n    let data = new FormData();\r\n    data.append(\"file\", img);\r\n    fetch_auth(\r\n      `/api/project/save_screenshot?fileName=${fileName}&folderPath=${folderPath}`,\r\n      {\r\n        method: \"POST\",\r\n        body: data,\r\n      }\r\n    )\r\n      .then((response) => response.json())\r\n      .then((res) => callback(res));\r\n  }\r\n\r\n  /**\r\n   * Delete Project Module Preview Image and json file\r\n   * @param {String} name\r\n   * @param {Function} callback\r\n   */\r\n  static deleteProjectModuleType(name, callback) {\r\n    fetch_auth(`/api/project/delete_project_module_type?name=${name}`, {\r\n      method: \"POST\",\r\n    })\r\n      .then((response) => response.json())\r\n      .then((res) => callback(res));\r\n  }\r\n\r\n  /**\r\n   * Imports Exported Project Types\r\n   * @param {FormFile} fileMappings\r\n   * @param {Function} callback\r\n   * @param {Function} errorCallback\r\n   */\r\n  static importProjectTypes(fileMappings, callback, errorCallback) {\r\n    var data = new FormData();\r\n    data.append(\"file\", fileMappings);\r\n    fetch_auth(`/api/project/import_project_types`, {\r\n      method: \"POST\",\r\n      body: data,\r\n    })\r\n      .then((response) => response.json())\r\n      .then((res) => (res.error ? errorCallback(res.error) : callback(res)))\r\n      .catch((error) => errorCallback(error));\r\n  }\r\n\r\n  /**\r\n   * Deletes multiple Projects\r\n   * @param {String[]} projectIds\r\n   * @param {Function} callback\r\n   */\r\n  static deleteProjects(projectIds, callback) {\r\n    fetch_auth(`/api/project/delete`, {\r\n      method: \"POST\",\r\n      headers: { \"Content-Type\": \"application/json\" },\r\n      body: JSON.stringify(projectIds),\r\n    })\r\n      .then((response) => response.json())\r\n      .then((json) => {\r\n        // success\r\n        callback(json);\r\n      });\r\n  }\r\n\r\n  /**\r\n   * Deletes Gallery Export of Projects\r\n   * @param {String[]} projectNames\r\n   * @param {Function} callback\r\n   */\r\n  static deleteGalleryExport(projectNames, callback) {\r\n    fetch_auth(`/api/project/deleteGallery`, {\r\n      method: \"POST\",\r\n      headers: { \"Content-Type\": \"application/json\" },\r\n      body: JSON.stringify(projectNames),\r\n    })\r\n      .then((response) => response.json())\r\n      .then((json) => {\r\n        // success\r\n        callback(json);\r\n      });\r\n  }\r\n\r\n  /**\r\n   * Duplicate multiple Projects\r\n   * @param {String[]} projectIds\r\n   * @param {Function} callback\r\n   */\r\n  static duplicateProjects(projectIds, callback) {\r\n    fetch_auth(`/api/project/duplicate`, {\r\n      method: \"POST\",\r\n      headers: { \"Content-Type\": \"application/json\" },\r\n      body: JSON.stringify(projectIds),\r\n    })\r\n      .then((response) => response.json())\r\n      .then((json) => {\r\n        // success\r\n        callback(json);\r\n      });\r\n  }\r\n\r\n  /**\r\n   * Merges multiple Projects and creates new Project\r\n   * @param {String[]} projectIds\r\n   * @param {Function} callback\r\n   */\r\n  static mergeProjects(projectIds, callback) {\r\n    fetch_auth(`/api/project/merge`, {\r\n      method: \"POST\",\r\n      headers: { \"Content-Type\": \"application/json\" },\r\n      body: JSON.stringify(projectIds),\r\n    })\r\n      .then((response) => {\r\n        return response.json();\r\n      })\r\n      .then((json) => {\r\n        // success\r\n        callback(json);\r\n      });\r\n  }\r\n\r\n  /**\r\n   * Rename Project\r\n   * @param {String} projectId\r\n   * @param {String} name\r\n   * @param {Function} callback\r\n   */\r\n  static renameProject(projectId, name, callback) {\r\n    let params = [projectId, name];\r\n    fetch_auth(`/api/project/rename`, {\r\n      method: \"POST\",\r\n      headers: { \"Content-Type\": \"application/json\" },\r\n      body: JSON.stringify(params),\r\n    })\r\n      .then((response) => response.json())\r\n      .then((json) => {\r\n        // success\r\n        callback(json);\r\n      });\r\n  }\r\n\r\n  /**\r\n   * Update Project Files\r\n   * @param {String} projectId\r\n   * @param {Object} model\r\n   * @param {Function} callback\r\n   */\r\n  static updateProjectFiles(projectId, model, callback) {\r\n    fetch_auth(`/api/project/update_files?id=${projectId}`, {\r\n      method: \"POST\",\r\n      headers: { \"Content-Type\": \"application/json\" },\r\n      body: JSON.stringify(model),\r\n    })\r\n      .then((response) => response.json())\r\n      .then((json) => {\r\n        // success\r\n        callback(json);\r\n      });\r\n  }\r\n\r\n  /**\r\n   * Sets multiple Projects to pending\r\n   * @param {String[]} projectIds\r\n   * @param {Function} callback\r\n   */\r\n  static setProjectsPending(projectIds, callback) {\r\n    fetch_auth(`/api/project/pending`, {\r\n      method: \"POST\",\r\n      headers: { \"Content-Type\": \"application/json\" },\r\n      body: JSON.stringify(projectIds),\r\n    })\r\n      .then((response) => response.json())\r\n      .then((json) => {\r\n        // success\r\n        callback(json);\r\n      });\r\n  }\r\n\r\n  /**\r\n   * Sets multiple Projects to timed\r\n   * @param {String[]} projectIds\r\n   * @param {Function} callback\r\n   */\r\n  static setProjectsTimed(projectIds, callback) {\r\n    fetch_auth(`/api/project/timed`, {\r\n      method: \"POST\",\r\n      headers: { \"Content-Type\": \"application/json\" },\r\n      body: JSON.stringify(projectIds),\r\n    })\r\n      .then((response) => response.json())\r\n      .then((json) => {\r\n        // success\r\n        callback(json);\r\n      });\r\n  }\r\n\r\n  /**\r\n   * saves project data into a json file\r\n   * @param {Object} data project model\r\n   * @param {Function} callback\r\n   */\r\n  static saveProject(data, callback) {\r\n    fetch_auth(`/api/project/saveProject`, {\r\n      method: \"POST\",\r\n      headers: { \"Content-Type\": \"application/json\" },\r\n      body: JSON.stringify(data),\r\n    })\r\n      .then((response) => response.json())\r\n      .then((data) => {\r\n        callback(data);\r\n      });\r\n  }\r\n\r\n  /**\r\n   * saves annotations into json files\r\n   * @param {String} projectId\r\n   * @param {Object} data project model\r\n   * @param {Function} callback\r\n   */\r\n  static saveAnnotations(projectId, fileId, data, callback) {\r\n    // https://stackoverflow.com/questions/50918007/accepting-byte-in-a-net-core-webapi-controller\r\n    // data = new Blob([data.buffer]);\r\n    fetch_auth(\r\n      `/api/project/saveAnnotations?projectId=${projectId}&fileId=${fileId}`,\r\n      {\r\n        method: \"POST\",\r\n        headers: { \"Content-Type\": \"application/octet-stream\" },\r\n        body: data,\r\n      }\r\n    )\r\n      .then((response) => response.json())\r\n      .then((data) => {\r\n        callback(data);\r\n      })\r\n      .catch((error) => console.log(\"error\", error));\r\n  }\r\n\r\n  /**\r\n   * sends image to ftp server to simulate stream\r\n   *\r\n   */\r\n  static streamRenderer(data, remoteUuid, callback) {\r\n    fetch_auth(`/api/project/streamRenderer?remoteUuid=${remoteUuid}`, {\r\n      method: \"POST\",\r\n      headers: { \"Content-Type\": \"application/octet-stream\" },\r\n      body: data,\r\n    })\r\n      .then((response) => response.json())\r\n      .then((data) => {\r\n        callback(data);\r\n      })\r\n      .catch((error) => console.log(\"error\", error));\r\n  }\r\n\r\n  /**\r\n   * Load the structures of a project from backend.\r\n   * @param {uuid} projectId Id of the project to load the structures for.\r\n   * @param {function} callback Callback function to execute on success.\r\n   * @param {function} error Callback function to execute on error.\r\n   */\r\n  static loadStructures(projectId, callback, error) {\r\n    fetch_auth(`/api/project/load_structures?projectId=${projectId}`, {\r\n      method: \"GET\",\r\n    })\r\n      .then((res) => {\r\n        return res.ok\r\n          ? res.json()\r\n          : { error: `Failed to load structures for project ${projectId}` };\r\n      })\r\n      .then((res) => {\r\n        if (res.error) {\r\n          error(res.error);\r\n        } else {\r\n          // Cast to structure class\r\n          res = res.map((s) => Structure.fromObject(s));\r\n          callback(res);\r\n        }\r\n      });\r\n  }\r\n\r\n  /**\r\n   * Save structures of a project to its database.\r\n   * @param {uuid} projectId Id of project to save annotations for.\r\n   * @param {array} structures Structures to save as list.\r\n   * @param {function} callback Function executed on success.\r\n   * @param {function} error Error callback function.\r\n   */\r\n  static saveStructures(projectId, structures, callback, error) {\r\n    fetch_auth(`/api/project/save_structures?projectId=${projectId}`, {\r\n      method: \"POST\",\r\n      headers: { \"Content-Type\": \"application/json\" },\r\n      body: JSON.stringify(structures),\r\n    })\r\n      .then((res) => (res.ok ? null : res.json()))\r\n      .then((data) => {\r\n        if (data?.error) error(data.error);\r\n        else callback();\r\n      })\r\n      .catch((err) => error(err));\r\n  }\r\n\r\n  /**\r\n   * Save rois of a project to the projects annotation database.\r\n   * @param {UUID} projectId Id of project to save annotations for.\r\n   * @param {RoiType} roiType Type of rois to be saved.\r\n   * @param {array} rois List of all rois to be saved.\r\n   * @param {function} callback Function to execute on success.\r\n   * @param {function} error Function to execute on error.\r\n   */\r\n  static saveAnnotationsToDb(projectId, roiType, rois, callback, error) {\r\n    // Check for missing input\r\n    if (!projectId || !roiType || !rois) return;\r\n\r\n    // Reduce rois to those modified\r\n    rois = rois.filter(\r\n      (roi) => roi.modificationStatus !== ModificationStatus.Saved\r\n    );\r\n\r\n    // No rois to save\r\n    if (rois.length === 0) {\r\n      callback({\r\n        success: \"All rois already saved\",\r\n        roiUpdate: {\r\n          reassignedIds: [],\r\n          failedToAdd: [],\r\n          failedToDelete: [],\r\n        },\r\n      });\r\n      return;\r\n    }\r\n\r\n    // Identify new rois\r\n    let roisToAdd = rois.filter(\r\n      (roi) => roi.modificationStatus === ModificationStatus.Added\r\n    );\r\n\r\n    // Identify deleted rois, keep only ids\r\n    let roiIdsToDelete = rois\r\n      .filter((roi) => roi.modificationStatus === ModificationStatus.Deleted)\r\n      .map((roi) => roi.id);\r\n\r\n    let data = new Blob([JSON.stringify({ roisToAdd, roiIdsToDelete })]);\r\n\r\n    fetch_auth(\r\n      `/api/project/save_annotations_to_db?projectId=${projectId}&roiType=${roiType}`,\r\n      {\r\n        method: \"POST\",\r\n        headers: { \"Content-Type\": \"application/octet-stream\" },\r\n        body: data,\r\n      }\r\n    )\r\n      .then((res) => res.json())\r\n      .then((data) => {\r\n        data.error || data.warning ? error(data) : callback(data);\r\n      })\r\n      .catch((err) => error({ error: err.toString() }));\r\n  }\r\n\r\n  /**\r\n   * saves project data into a json file\r\n   * @param {Object} data project model\r\n   * @param {Function} callback\r\n   */\r\n  static saveGallery() {}\r\n\r\n  /**\r\n   * load project type viewer configuration\r\n   * @param {String} projectType name of project type\r\n   * @param {Function} callback\r\n   */\r\n  static loadViewerConfig(projectType, callback) {\r\n    fetch_auth(\r\n      `/api/project/load_viewer_config?name=${encodeURIComponent(projectType)}`\r\n    )\r\n      .then((response) => response.json())\r\n      .then(callback);\r\n  }\r\n\r\n  /**\r\n   * load all available project types\r\n   * only load once, otherwise weit for a variable to be filled before returning result\r\n   * @param {Function} callback contains list of all project types\r\n   */\r\n  static loadAvailableProjectTypes(callback) {\r\n    //let t0 = performance.now();\r\n    if (typeof window.availabeProjectTypes === \"undefined\") {\r\n      window.availabeProjectTypes = \"blocked\";\r\n      fetch_auth(\"/api/project/get_project_types\")\r\n        .then((response) => response.json())\r\n        .then((data) => {\r\n          //console.log(\"loadAPTs time:\", performance.now() - t0);\r\n          window.availabeProjectTypes = data;\r\n          callback(data);\r\n        })\r\n        .catch((error) => {\r\n          console.log(error);\r\n        });\r\n    } else {\r\n      const waitForElement = () => {\r\n        if (window.availabeProjectTypes !== \"blocked\") {\r\n          //console.log(\"loadAPTs time:\", performance.now() - t0);\r\n          callback(window.availabeProjectTypes);\r\n        } else {\r\n          setTimeout(waitForElement, 200);\r\n        }\r\n      };\r\n      waitForElement();\r\n    }\r\n  }\r\n\r\n  /**\r\n   * load all available project types, but only return reduced information, to be faster\r\n   * also save and load from local storage\r\n   * @param {Function} callback contains list of all project types\r\n   */\r\n  static loadReducedAvailableProjectTypes(callback) {\r\n    //let t0 = performance.now();\r\n    Backend.getVersion((data) => {\r\n      const ptKey = \"projectTypes_\" + data.version;\r\n      let projectTypes = JSON.parse(localStorage.getItem(ptKey));\r\n      if (projectTypes === null) {\r\n        Backend.loadAvailableProjectTypes((data) => {\r\n          projectTypes = data.map((item) => {\r\n            return {\r\n              annotations: item.annotations,\r\n              description: item.description,\r\n              isUserModule: item.isUserModule,\r\n              name: item.name,\r\n              order: item.order,\r\n              label: item.label,\r\n            };\r\n          });\r\n          localStorage.setItem(ptKey, JSON.stringify(projectTypes));\r\n          //console.log(\"loadRAPTs time:\", performance.now() - t0);\r\n          callback(projectTypes);\r\n        });\r\n      } else {\r\n        //console.log(\"loadRAPTs time:\", performance.now() - t0);\r\n        callback(projectTypes);\r\n      }\r\n    });\r\n  }\r\n\r\n  /**\r\n   * load all available project types\r\n   * @param {String} dir directory to list files within\r\n   * @param {Function} callback contains list of all project types\r\n   */\r\n  static walkDir(dir, isRelative, callback) {\r\n    fetch_auth(\r\n      `/api/project/walk_dir?path=${encodeURIComponent(\r\n        dir\r\n      )}&isRelative=${isRelative}`\r\n    )\r\n      .then((response) => response.json())\r\n      .then(callback)\r\n      .catch((error) => {\r\n        console.log(\"error\", error);\r\n        window.showErrorSnackbar(\"Error loading directory!\");\r\n      });\r\n  }\r\n\r\n  /**\r\n   * load all available project types\r\n   * @param {String} dir directory to list files within\r\n   * @param {Function} callback contains list of all project types\r\n   */\r\n  static walkProjectDirFiles(dir, callback) {\r\n    fetch_auth(\r\n      `/api/project/walk_project_dir_files?path=${encodeURIComponent(dir)}`\r\n    )\r\n      .then((response) => response.json())\r\n      .then(callback);\r\n  }\r\n\r\n  /**\r\n   * Cancel Job\r\n   * @param {String} id\r\n   */\r\n  static cancelJob(id) {\r\n    fetch_auth(`/api/project/cancel`, {\r\n      method: \"POST\",\r\n      headers: { \"Content-Type\": \"application/json\" },\r\n      body: JSON.stringify(id),\r\n    }).then((response) => response.json());\r\n  }\r\n\r\n  /**\r\n   * Check if String has JSON-Format\r\n   * @param {String} str\r\n   */\r\n  static isJsonString(str) {\r\n    try {\r\n      // for (var i = 0; i < str.length; i++) {\r\n\r\n      // }\r\n      JSON.parse(str);\r\n    } catch (e) {\r\n      return false;\r\n    }\r\n    return true;\r\n  }\r\n\r\n  /**\r\n   * Runs a instant analysis tool with real time updates using signalR\r\n   * @param {Object} data Instant analysis configuration\r\n   * @param {Function} callback Success callback\r\n   * @param {Function} error Error callback\r\n   */\r\n  static instantAnalysisSignalR(data, spinloader, callback, error) {\r\n    //console.log(\"data:\", data);\r\n\r\n    // connection.on(\"Progress\", (line) => {\r\n    //   // output debug prints of python module\r\n    //   //console.debug(line);\r\n    // });\r\n    jobProgressConnection.off(\"StandardOutput\");\r\n    jobProgressConnection.on(\"StandardOutput\", (line) => {\r\n      // output debug prints of python module\r\n\r\n      // output warning\r\n      if (line) {\r\n        if (this.isJsonString(line)) {\r\n          const jsonLine = JSON.parse(line);\r\n          for (var k in jsonLine) {\r\n            switch (k) {\r\n              case \"warning\":\r\n                window.showWarningSnackbar(jsonLine[\"warning\"]);\r\n                break;\r\n              default:\r\n                break;\r\n            }\r\n          }\r\n        } else {\r\n          window.trainingProgress(line);\r\n        }\r\n        if (line.includes(\"[DownloadProgress]\")) {\r\n          let progress = line.replace(\"[DownloadProgress]\", \"\");\r\n          spinloader.showWithProgress({\r\n            message: \"Download Model\",\r\n            progress: parseInt(progress, 10),\r\n          });\r\n        } else if (line.includes(\"[IAMProgress]\")) {\r\n          let progress = line.replace(\"[IAMProgress]\", \"\");\r\n          spinloader.showWithProgress({\r\n            message: \"Progress\",\r\n            progress: parseInt(progress, 10),\r\n          });\r\n        } else if (!line.includes(\"[MESSAGE]\")) {\r\n          console.debug(line);\r\n          spinloader.show();\r\n        }\r\n      }\r\n    });\r\n    jobProgressConnection.off(\"Result\");\r\n    jobProgressConnection.on(\"Result\", (json) => {\r\n      if (json.error) {\r\n        console.log(\"iam result error:\", json.error);\r\n        // there was an exception in python module\r\n        error(json.error);\r\n      } else {\r\n        // success\r\n        json.project.files.forEach((file) => {\r\n          file.annotations.forEach((annotation) => {\r\n            annotation.geoJSON = JSON.parse(annotation.serializedGeoJSON);\r\n            annotation.serializedGeoJSON = null;\r\n          });\r\n        });\r\n        callback(json.project);\r\n      }\r\n    });\r\n\r\n    fetch_auth(`/api/analysis/iam`, {\r\n      method: \"POST\",\r\n      headers: { \"Content-Type\": \"application/json\" },\r\n      body: JSON.stringify(data),\r\n    })\r\n      .then((response) => response.json())\r\n      .then((myJson) => {\r\n        if (jobProgressConnection.state === 0) {\r\n          // 0 = disconnected\r\n          jobProgressConnection\r\n            .start()\r\n            .then(() =>\r\n              jobProgressConnection.invoke(\"AssociateJob\", myJson.jobId)\r\n            )\r\n            .catch((err) => console.error(err.toString()));\r\n        } else {\r\n          jobProgressConnection\r\n            .invoke(\"AssociateJob\", myJson.jobId)\r\n            .catch((err) => console.error(err.toString()));\r\n        }\r\n      });\r\n  }\r\n\r\n  /**\r\n   * Runs a instant analysis tool\r\n   * @param {Object} data Instant analysis configuration\r\n   * @param {Function} callback Success callback\r\n   * @param {Function} error Error callback\r\n   */\r\n  static instantAnalysis(data, callback, error) {\r\n    fetch_auth(`/api/analysis/iam`, {\r\n      method: \"POST\",\r\n      headers: { \"Content-Type\": \"application/json\" },\r\n      body: JSON.stringify(data),\r\n    })\r\n      .then((response) => response.json())\r\n      .then((json) => {\r\n        console.log(json.stdout);\r\n        if (json.error) {\r\n          error(json.error);\r\n        } else {\r\n          // success\r\n          callback(json.project);\r\n        }\r\n      });\r\n  }\r\n  /**\r\n   * Runs a instant analysis tool with real time updates using signalR\r\n   * @param {Object} data Instant analysis configuration\r\n   * @param {Function} callback Success callback\r\n   * @param {Function} error Error callback\r\n   */\r\n  static activeLearningSignalR(data, callback, error) {\r\n    //console.debug(JSON.stringify(data));\r\n\r\n    let connection = new HubConnectionBuilder()\r\n      .withUrl(\"/jobprogress\")\r\n      .configureLogging(LogLevel.Warning)\r\n      .build();\r\n    connection.serverTimeoutInMilliseconds = 5000000; // 5000 second\r\n    // connection.on(\"Progress\", (line) => {\r\n    //   // output debug prints of python module\r\n    //   //console.debug(line);\r\n    // });\r\n    connection.on(\"StandardOutput\", (line) => {\r\n      // output debug prints and warnings of python module\r\n      if (line) {\r\n        if (this.isJsonString(line)) {\r\n          const jsonLine = JSON.parse(line);\r\n          for (var k in jsonLine) {\r\n            switch (k) {\r\n              case \"warning\":\r\n                window.showWarningSnackbar(jsonLine[\"warning\"]);\r\n                break;\r\n              default:\r\n                break;\r\n            }\r\n          }\r\n        } else {\r\n          window.galleryTrainingProgress(line);\r\n        }\r\n        console.debug(line);\r\n      }\r\n    });\r\n    connection.on(\"Result\", (json) => {\r\n      if (json.error) {\r\n        // there was an exception in python module\r\n        error(json.error);\r\n      } else {\r\n        // success\r\n        callback(json.alModel);\r\n      }\r\n    });\r\n\r\n    fetch_auth(`/api/analysis/alm`, {\r\n      method: \"POST\",\r\n      headers: { \"Content-Type\": \"application/json\" },\r\n      body: JSON.stringify(data),\r\n    })\r\n      .then((response) => response.json())\r\n      .then((myJson) => {\r\n        connection\r\n          .start()\r\n          .then(() => connection.invoke(\"AssociateJob\", myJson.jobId))\r\n          .catch((err) => console.error(err.toString()));\r\n      });\r\n  }\r\n\r\n  /**\r\n   * generate path for images to render a specific region\r\n   */\r\n  static renderRegion(params) {\r\n    return `/api/rendering/render_region?id=${params.id}&page=${params.page}&level=${params.lv}&x=${params.x}&y=${params.y}`;\r\n    //return `http://localhost:${DEFAULT_PORT}/api/v1/render_region?id=${params.id}&page=${params.page}&level=${params.lv}&x=${params.x}&y=${params.y}`;\r\n  }\r\n\r\n  /**\r\n   * generate path for thumbnail image\r\n   */\r\n  static renderThumbnail(id) {\r\n    return `/api/rendering/render_thumbnail?id=${id}`;\r\n  }\r\n\r\n  /**\r\n   * Get the loaction of thumbnails for a image based on its path.\r\n   * @param {string} image_path Path to the image being loaded.\r\n   * @returns {string} Api link to image thumbnail.\r\n   */\r\n  static imageThumbnail(image_path) {\r\n    return `/api/project/image_thumbnail?path=${image_path}`;\r\n  }\r\n\r\n  /**\r\n   * Get the loaction of thumbnails for a image based on its path.\r\n   * @param {string} image_path Path to the image being loaded.\r\n   * @returns {object} object containing uuid.\r\n   */\r\n  static async getFileUuid(image_path) {\r\n    let obj = {};\r\n    await fetch_auth(`/api/project/file_uuid?path=${image_path}`, {\r\n      method: \"GET\",\r\n    })\r\n      .then((res) => res.json())\r\n      .then((data) => {\r\n        obj = data;\r\n      });\r\n\r\n    return obj;\r\n  }\r\n\r\n  /**\r\n   * generate and load 3d objects\r\n   * @param {Object} data Instant analysis configuration\r\n   */\r\n  static get3dObjects(data) {\r\n    return `/api/rendering/get3dObjects?file_id=${data.fileId}&project_id=${data.projectId}&zRange=${data.zRange}&showPointCloud=${data.showPointCloud}`;\r\n  }\r\n\r\n  /**\r\n   * check if Sony QD Job ran\r\n   * @param {Object} data Instant analysis configuration\r\n   */\r\n  static get3DAllObjectsExists(data, callback) {\r\n    fetch_auth(\r\n      `/api/rendering/get3DAllObjectsExists?file_id=${data.fileId}&project_id=${data.projectId}`,\r\n      {\r\n        method: \"GET\",\r\n      }\r\n    )\r\n      .then((res) => res.text())\r\n      .then((data) => callback(data));\r\n  }\r\n\r\n  /**\r\n   * check, if python server is running\r\n   * @param {*} callback\r\n   */\r\n  static isLocalServerReady(callback) {\r\n    fetch_auth(`/api/rendering/is_running`, {\r\n      method: \"GET\",\r\n    })\r\n      .then((res) => res.text())\r\n      .then((data) => callback(data.toLowerCase() === \"true\"))\r\n      .catch(() => console.log(\"error is_running\"));\r\n  }\r\n\r\n  /**\r\n   * Trigger download of file.\r\n   * @param {String} id Project UUID\r\n   * @param {String} exportName Name of the file to be exported. Defaults to \"report\".\r\n   */\r\n  static downloadReport(id, exportName = `report`) {\r\n    // Add timestamp to exported file.\r\n    exportName += `_${convertDateToShortIsoString(Date.now())}`;\r\n    fetch_auth(`/api/project/report?id=${id}`, {\r\n      method: \"GET\",\r\n    })\r\n      .then((response) => response.blob())\r\n      .then((blob) => {\r\n        var url = window.URL.createObjectURL(blob);\r\n        var a = document.createElement(\"a\");\r\n        a.href = url;\r\n        a.download = exportName;\r\n        document.body.appendChild(a); // we need to append the element to the dom -> otherwise it will not work in firefox\r\n        a.click();\r\n        a.remove(); //afterwards we remove the element again\r\n      });\r\n  }\r\n\r\n  /**\r\n   * Retrieve report for a specific project from backend.\r\n   * @param {UUID} id Project id for which to get the report.\r\n   * @param {function} callback Function processing the loaded report. Recieves a UInt8Array.\r\n   * @param {function} error Fallback function on error.\r\n   */\r\n  static loadReport(id, callback, error) {\r\n    const currentUser = authenticationService.currentUserValue;\r\n    let url = `${window.location.origin}/api/project/report?id=${id}`;\r\n\r\n    // Set up XHR Request\r\n    let req = new XMLHttpRequest();\r\n    req.open(\"GET\", url, true);\r\n    req.setRequestHeader(\"Authorization\", `Bearer ${currentUser.token}`);\r\n    req.responseType = \"arraybuffer\";\r\n    req.onload = () => {\r\n      let data = new Uint8Array(req.response);\r\n      callback(data);\r\n    };\r\n    req.onerror = (err) => {\r\n      error(err);\r\n    };\r\n    req.send();\r\n  }\r\n\r\n  /**\r\n   * generate image source to report chart\r\n   * @param {String} id Project ID\r\n   */\r\n  static renderReportChart(path) {\r\n    return `/api/project/report_chart?path=${path}`;\r\n  }\r\n\r\n  /**\r\n   * Runs a instant analysis tool with real time updates using signalR\r\n   * @param {Object} data Instant analysis configuration\r\n   * @param {Function} callback Success callback\r\n   * @param {Function} error Error callback\r\n   */\r\n  static aiTrainingSignalR(\r\n    data,\r\n    progressCallback,\r\n    successCallback,\r\n    errorCallback\r\n  ) {\r\n    let modelType = \"none\";\r\n    let isVdlModel = false;\r\n    if (data.parameters && data.parameters.modelType) {\r\n      modelType = data.parameters.modelType;\r\n      if (modelType == \"instance segmentation\") {\r\n        // check if vdl model\r\n        if (data.parameters.advancedSettings.comDLArchitecture === null) {\r\n          isVdlModel = true;\r\n        } else if (\r\n          data.parameters.advancedSettings.comDLArchitecture &&\r\n          data.parameters.advancedSettings.comDLArchitecture.label ==\r\n            \"Mask R-CNN VDL\"\r\n        ) {\r\n          isVdlModel = true;\r\n        }\r\n      }\r\n    }\r\n\r\n    jobProgressConnection.off(\"Progress\");\r\n    jobProgressConnection.on(\"Progress\", (line) => {\r\n      if (line) {\r\n        progressCallback(line);\r\n      }\r\n    });\r\n    jobProgressConnection.off(\"StandardOutput\");\r\n    jobProgressConnection.on(\"StandardOutput\", (line) => {\r\n      // output debug prints of python module\r\n      if (line) {\r\n        console.debug(line);\r\n        if (typeof window.trainingProgress !== \"function\") return;\r\n        window.trainingProgress(line);\r\n\r\n        if (typeof window.updateTrainingData !== \"function\") return;\r\n        window.updateTrainingData(line, modelType, isVdlModel);\r\n      }\r\n    });\r\n    jobProgressConnection.off(\"StandardError\");\r\n    jobProgressConnection.on(\"StandardError\", (line) => {\r\n      // output debug prints of python module\r\n      if (line) {\r\n        window.trainingProgress(line);\r\n        if (typeof window.updateTrainingData === \"function\") {\r\n          window.updateTrainingData(line, modelType, isVdlModel);\r\n        }\r\n      }\r\n    });\r\n    jobProgressConnection.off(\"Result\");\r\n    jobProgressConnection.on(\"Result\", (json) => {\r\n      if (json.error) {\r\n        console.log(\"training callback error:\", json);\r\n        // there was an exception in python module\r\n        errorCallback(json.error);\r\n      } else {\r\n        // success\r\n        successCallback(json.project);\r\n      }\r\n    });\r\n\r\n    fetch_auth(`/api/ai/train`, {\r\n      method: \"POST\",\r\n      headers: { \"Content-Type\": \"application/json\" },\r\n      body: JSON.stringify(data),\r\n    })\r\n      .then((response) => response.json())\r\n      .then((myJson) => {\r\n        if (jobProgressConnection.state === 0) {\r\n          jobProgressConnection\r\n            .start()\r\n            .then(() =>\r\n              jobProgressConnection.invoke(\"AssociateJob\", myJson.jobId)\r\n            )\r\n            .catch((err) => console.error(err.toString()));\r\n        } else {\r\n          jobProgressConnection\r\n            .invoke(\"AssociateJob\", myJson.jobId)\r\n            .catch((err) => console.error(err.toString()));\r\n        }\r\n      });\r\n  }\r\n\r\n  /**\r\n   * Runs a instant analysis tool with real time updates using signalR.\r\n   * New version of the previous function, Backend.aiTrainingSignalR.\r\n   * @param {object} data Contains the projectId as well as the parameters for the training.\r\n   */\r\n  static trainModel(data) {\r\n    return fetch_auth(`/api/ai/train_model`, {\r\n      method: \"POST\",\r\n      headers: { \"Content-Type\": \"application/json\" },\r\n      body: JSON.stringify(data),\r\n    }).then((response) => response.json());\r\n  }\r\n\r\n  /**\r\n   * Get the tensorboard classification images.\r\n   * @param {string} modelName Id of the closed project.\r\n   * @param {int} index Function to call upon success.\r\n   */\r\n  static loadTensorboardConfusionMatrixImage(modelName, index) {\r\n    return (\r\n      SERVER_URL +\r\n      `api/v1/tensorboard_results/confusion_matrix_images?modelName=${modelName}&index=${index}`\r\n    );\r\n  }\r\n\r\n  /**\r\n   * Get the tensorboard classification images.\r\n   * @param {string} modelName Id of the closed project.\r\n   * @param {int} index Function to call upon success.\r\n   */\r\n  static loadTensorboardClassificationImage(modelName, index) {\r\n    return (\r\n      SERVER_URL +\r\n      `api/v1/tensorboard_results/classification_images?modelName=${modelName}&index=${index}`\r\n    );\r\n  }\r\n\r\n  /**\r\n   * Get the tensorboard scalars.\r\n   * @param {string} modelName Id of the closed project.\r\n   * @param {function} callback Function to call upon success.\r\n   * @param {function} error Function to call upon error.\r\n   */\r\n  static loadTensorboardScalarData = (\r\n    modelName = \"\",\r\n    callback,\r\n    error = () => {}\r\n  ) => {\r\n    // TBD send API Call to ASP.NET\r\n    fetch_auth(`/api/ai/scalar_data?modelName=${modelName}`)\r\n      .then((res) => {\r\n        if (res.ok) {\r\n          return res.json();\r\n        } else if (!res.ok) {\r\n          return {};\r\n        }\r\n      })\r\n      .then((res) =>\r\n        res.error\r\n          ? error(`Error closing project ${modelName}:\\n\\n ${res.error}`)\r\n          : callback(res)\r\n      )\r\n      .catch((err) =>\r\n        error(`Error parsing response, actions failed:\\n\\n ${err}`)\r\n      );\r\n  };\r\n\r\n  /**\r\n   * Get the current training epoch from tensorboard.\r\n   * @param {string} modelName Name of the model.\r\n   * @param {function} callback Function to call upon success.\r\n   * @param {function} error Function to call upon error.\r\n   */\r\n  static getTrainingEpochProgress = (\r\n    modelName = \"\",\r\n    callback,\r\n    error = () => {}\r\n  ) => {\r\n    // TBD send API Call to ASP.NET\r\n    fetch_auth(`/api/ai/training_epochs_progress?modelName=${modelName}`)\r\n      .then((res) => {\r\n        if (res.ok) {\r\n          return res.json();\r\n        } else if (!res.ok) {\r\n          return {};\r\n        }\r\n      })\r\n      .then((res) =>\r\n        res.error\r\n          ? error(\r\n              `Error reading epochs progress ${modelName}:\\n\\n ${res.error}`\r\n            )\r\n          : callback(res)\r\n      )\r\n      .catch((err) =>\r\n        error(`Error parsing response, actions failed:\\n\\n ${err}`)\r\n      );\r\n  };\r\n\r\n  /**\r\n   * Runs a instant analysis tool with real time updates using signalR\r\n   * @param {Function} callback Success callback\r\n   */\r\n  static stopAITraining(callback) {\r\n    fetch_auth(`/api/ai/stop_train`)\r\n      .then((response) => response.json())\r\n      .then(callback);\r\n  }\r\n\r\n  /**\r\n   * Opens a dialog where you can select an AI model for the selected structure\r\n   * @param {Function} callback\r\n   */\r\n  static getAIModelDialogData(callback) {\r\n    fetch_auth(`/api/ai/custom_models`)\r\n      .then((response) => response.json())\r\n      .then(callback);\r\n  }\r\n\r\n  /**\r\n   * Copies the selected AI models to {../TEMP/custom_models/verified}-folder. This folder is accessable from the AICockpit.\r\n   * @param {string} verifiedAIModel selected ai model which gets copied to verified models folder\r\n   * @param {Function} callback\r\n   */\r\n  static addCustomAIModels(verifiedAIModel, callback) {\r\n    fetch_auth(`/api/ai/add_custom_models?verifiedAIModel=${verifiedAIModel}`)\r\n      .then((response) => response.json())\r\n      .then((res) => callback(res));\r\n  }\r\n\r\n  /**\r\n   * Deletes selected Custom AI Model\r\n   * @param {*} selectedAIModel\r\n   * @param {*} callback\r\n   */\r\n  static deleteCustomAIModels(selectedAIModel, callback) {\r\n    fetch_auth(`/api/ai/delete_custom_models`, {\r\n      method: \"POST\",\r\n      headers: { \"Content-Type\": \"application/json\" },\r\n      body: JSON.stringify(selectedAIModel),\r\n    })\r\n      .then((response) => response.json())\r\n      .then((json) => {\r\n        // success\r\n        callback(json);\r\n      });\r\n  }\r\n\r\n  /**\r\n   * gets the sourcepath of selected verified model\r\n   * @param {*} selectedAIModel\r\n   * @param {*} callback\r\n   */\r\n  static getSelectedModelSourcepath(selectedAIModel, callback) {\r\n    fetch_auth(`/api/ai/get_model_sourcepath`, {\r\n      method: \"POST\",\r\n      headers: { \"Content-Type\": \"application/json\" },\r\n      body: JSON.stringify(selectedAIModel),\r\n    })\r\n      .then((response) => response.json())\r\n      .then((json) => {\r\n        // success\r\n        callback(json);\r\n      });\r\n  }\r\n\r\n  /**\r\n   * Get License Infos for LicensingPage\r\n   * @param {function} callback Success callback\r\n   */\r\n  static getLicensingInfo(callback) {\r\n    var requestOptions = {\r\n      method: \"GET\",\r\n      redirect: \"follow\",\r\n    };\r\n\r\n    fetch(\"/api/about/licensingInfo\", requestOptions)\r\n      .then((response) => response.json())\r\n      .then(callback)\r\n      .catch((error) => console.log(\"error!!!!!!!!!\", error));\r\n  }\r\n\r\n  /**\r\n   * Get Operating System\r\n   * @param {Function} callback Success callback\r\n   */\r\n  static getOS(callback) {\r\n    fetch(\"/api/about/os\")\r\n      .then((response) => response.text())\r\n      .then((result) => {\r\n        console.log(result);\r\n        callback(result);\r\n      })\r\n      .catch((error) => console.log(\"error\", error));\r\n  }\r\n\r\n  /**\r\n   * Get currently logged in User\r\n   * @param {Function} callback Success callback\r\n   */\r\n  static async getCurrentUser(callback) {\r\n    try {\r\n      const res = await fetch_auth(\"/api/user/current_user\");\r\n      if (res.ok) {\r\n        const data = await res.json();\r\n        const user = data.user;\r\n        user.group = data.group;\r\n        if (user.group !== null) {\r\n          callback(user);\r\n        }\r\n      } else {\r\n        // Force new login on missing user\r\n        authenticationService.logout();\r\n        window.location.reload(true); //clear cache\r\n        window.showErrorSnackbar(\r\n          \"Could not authenticate user. Are you logged in?\"\r\n        );\r\n        return { user: { group: null, fullName: null } };\r\n      }\r\n    } catch (error) {\r\n      console.error(error);\r\n    }\r\n  }\r\n\r\n  /**\r\n   * Get user list from login-Page\r\n   * @param {Function} callback Success callback\r\n   */\r\n  static getUserList(callback) {\r\n    fetch(\"/api/login/userlist\")\r\n      .then((response) => response.json())\r\n      .then(callback);\r\n  }\r\n\r\n  /**\r\n   * Receives instructions on how to perform PCA in json format\r\n   * Sends results in json format. Gives real time updates.\r\n   * @param {JSON} graphRequestSettings Specification of the request\r\n   * @param {Function} callback Success callback on json request\r\n   * @param {Function} error Error callback on json request\r\n   * @param {Function} progressCallback Webhook callback for progress\r\n   */\r\n  static requestSpectraData(\r\n    graphRequestSettings,\r\n    callback,\r\n    error,\r\n    progressCallback\r\n  ) {\r\n    let connection = new HubConnectionBuilder()\r\n      .withUrl(\"/jobprogress\")\r\n      .configureLogging(LogLevel.Warning)\r\n      .build();\r\n    connection.serverTimeoutInMilliseconds = 5000000; // 5000 second\r\n    connection.on(\"StandardOutput\", (line) => {\r\n      // output debug prints of python module\r\n      if (line) {\r\n        // NOTE: [MESSAGE] is kept as compatibility with independent import functions\r\n        // used for Image import, background AI processes, etc.\r\n        if (line.startsWith(\"[MESSAGE]\")) {\r\n          // Remove [MESSAGE] and extract JSON payload\r\n          progressCallback(JSON.parse(line.slice(9)));\r\n        } else {\r\n          console.debug(line);\r\n        }\r\n      }\r\n    });\r\n\r\n    // Add GUID for WebHook\r\n    graphRequestSettings.jobId = uuidv4();\r\n    connection\r\n      .start()\r\n      .then(() => connection.invoke(\"AssociateJob\", graphRequestSettings.jobId))\r\n      .catch((err) => {\r\n        console.log(\"error catch\");\r\n        console.error(err.toString());\r\n      });\r\n\r\n    var requestOptions = {\r\n      method: \"POST\",\r\n      headers: {\r\n        \"Content-Type\": \"application/json\",\r\n        Accept: \"application/json\",\r\n      },\r\n      body: JSON.stringify(graphRequestSettings),\r\n    };\r\n\r\n    fetch_auth(\"/api/analysis/pcaupdate\", requestOptions)\r\n      .then((response) => response.json())\r\n      .then((json) => {\r\n        if (json.result.error) {\r\n          // there was an exception in python module\r\n          error(json.result.error);\r\n        } else {\r\n          // success\r\n          callback(json.result);\r\n        }\r\n      });\r\n  }\r\n\r\n  /**\r\n   * Runs a Grid annotation tool with real time updates\r\n   * @param {Object} data export Data\r\n   * @param {Function} callback Success callback\r\n   * @param {Function} error Error callback\r\n   */\r\n  static tileExport(data) {\r\n    let connection = new HubConnectionBuilder()\r\n      .withUrl(\"/jobprogress\")\r\n      .configureLogging(LogLevel.Warning)\r\n      .build();\r\n    connection.serverTimeoutInMilliseconds = 5000000; // 5000 second\r\n    connection.on(\"Progress\", (line) => {\r\n      if (line) {\r\n        console.log(\"line\", line);\r\n      }\r\n    });\r\n    connection.on(\"StandardOutput\", (line) => {\r\n      if (line) {\r\n        window.tileExportProgress(line);\r\n      }\r\n    });\r\n    connection.on(\"Result\", (json) => {\r\n      if (json.error) {\r\n        console.log(\"json error\");\r\n      }\r\n    });\r\n\r\n    fetch_auth(`/api/project/tileexport`, {\r\n      method: \"POST\",\r\n      headers: { \"Content-Type\": \"application/json\" },\r\n      body: JSON.stringify(data),\r\n    })\r\n      .then((response) => response.json())\r\n      .then((myJson) => {\r\n        connection\r\n          .start()\r\n          .then(() => connection.invoke(\"AssociateJob\", myJson.jobId))\r\n          .catch((err) => {\r\n            console.error(err.toString());\r\n            console.log(\"error catch\");\r\n          });\r\n      });\r\n  }\r\n\r\n  static validateResponse(response) {\r\n    if (!response.ok) {\r\n      throw Error(response.statusText);\r\n    }\r\n    return response;\r\n  }\r\n\r\n  static getSocket() {\r\n    const socket = io(`http://127.0.0.1:${DEFAULT_PORT}`);\r\n    return socket;\r\n  }\r\n\r\n  static getScanSocket() {\r\n    const socket = io(`http://127.0.0.1:${DEFAULT_PORT}`);\r\n    return socket;\r\n  }\r\n\r\n  /**\r\n   * connect to backend via Websocket and returns it for communication\r\n   * @param {string} projectId uuid of the project\r\n   */\r\n  static getAnnotationSocket(projectId) {\r\n    return new WebSocket(\r\n      `ws://127.0.0.1:${DEFAULT_PORT}/api/anno/connect?projectId=${projectId}`\r\n    );\r\n  }\r\n\r\n  /**\r\n   * gets metadata from .hsasld file\r\n   */\r\n  static getFileMetadata(path, callback) {\r\n    fetch(SERVER_URL + \"/api/scan/get_hsasld_meta?path=\" + path)\r\n      .then((response) => {\r\n        return response.json();\r\n      })\r\n      .then((myJson) => callback(myJson));\r\n  }\r\n\r\n  /**\r\n   * get user actions from database\r\n   * @param {func} callback returns list of all user actions\r\n   */\r\n  static getUserActions(date, callback) {\r\n    const dateFormated = date.toISOString();\r\n    fetch_auth(`/api/user/get_user_actions?date=${dateFormated}`)\r\n      .then((response) => {\r\n        return response.json();\r\n      })\r\n      .then(callback);\r\n  }\r\n\r\n  /**\r\n   *\r\n   * @param {DateTime} date\r\n   */\r\n  static downloadUserActions(date) {\r\n    const dateFormated = date.toISOString();\r\n    const dateDay = convertDateToDayString(date);\r\n    fetch_auth(`/api/user/download_user_actions?date=${dateFormated}`)\r\n      .then((response) => {\r\n        if (response.ok) {\r\n          return response.blob();\r\n        } else {\r\n          window.showErrorSnackbar(\"Download Failed!\");\r\n          return null;\r\n        }\r\n      })\r\n      .then((blob) => {\r\n        if (blob !== null) {\r\n          var url = window.URL.createObjectURL(blob);\r\n          var a = document.createElement(\"a\");\r\n          a.href = url;\r\n          a.download = dateDay + \"_userActions.csv\";\r\n          document.body.appendChild(a); // we need to append the element to the dom -> otherwise it will not work in firefox\r\n          a.click();\r\n          a.remove(); //afterwards we remove the element again\r\n        }\r\n      });\r\n  }\r\n\r\n  /**\r\n   * Load a specific audio file to frontend.\r\n   * @param {string} id UUID of the file to be loaded.\r\n   * @param {function} callback Function handeling the successful response.\r\n   * @param {fucntion} error Function handeling a potential error message.\r\n   */\r\n  static loadAudioFile(id, callback, error) {\r\n    fetch_auth(`/api/audio/load_audio_file?id=${id}`)\r\n      .then((res) => {\r\n        if (res.ok) {\r\n          return res.blob();\r\n        } else {\r\n          try {\r\n            return res.json();\r\n          } catch {\r\n            return { error: `Could not load file ${id}` };\r\n          }\r\n        }\r\n      })\r\n      .then((res) => {\r\n        res.error\r\n          ? error(`Failed to load file ${id}:\\n\\n${res.error}`)\r\n          : callback(window.URL.createObjectURL(res));\r\n      })\r\n      .catch((err) => error(err));\r\n  }\r\n\r\n  /**\r\n   * sends imageData and points to backend to get a poygon using SAM\r\n   *\r\n   * @param {object} samData - p1, p2 and points for foreground and background with form {x: x, y: y, isForeground: boolean}\r\n   **/\r\n  static useSAM(data) {\r\n    return fetch_auth(\"/api/ai/use_sam\", {\r\n      method: \"POST\",\r\n      headers: { \"Content-Type\": \"application/json\" },\r\n      body: JSON.stringify(data),\r\n    })\r\n      .then((response) => response.json())\r\n      .catch((error) => console.error(\"caught error:\", error));\r\n  }\r\n}\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport { v4 as uuidv4 } from \"uuid\";\r\n\r\nimport { withRouter } from \"react-router-dom\";\r\n\r\nimport Typography from \"@mui/material/Typography\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\nimport Backend from \"../common/utils/Backend\";\r\nimport {\r\n  Tabs,\r\n  Tab,\r\n  Paper,\r\n  Container,\r\n  CssBaseline,\r\n  Table,\r\n  TableBody,\r\n  TableRow,\r\n  TableCell,\r\n  Grid,\r\n} from \"@mui/material\";\r\n\r\nconst styles = (theme) => ({\r\n  root: {\r\n    flexGrow: 1,\r\n    width: \"100%\",\r\n    height: \"calc(100vh - 64px - 48px)\",\r\n    overflow: \"hidden\",\r\n  },\r\n  paper: {\r\n    marginTop: theme.spacing(8),\r\n    display: \"flex\",\r\n    flexDirection: \"column\",\r\n  },\r\n  link: {\r\n    display: \"inline-block\",\r\n    margin: 5,\r\n  },\r\n});\r\n\r\nconst LogFilesTabComp = (props) => {\r\n  const { logFiles, logFilesPython, classes } = props;\r\n\r\n  return (\r\n    <div>\r\n      <Grid container>\r\n        <Grid item xs={12} sm={6}>\r\n          <Typography variant=\"h5\">Analysis Log Files:</Typography>\r\n          {logFilesPython.map((c) => (\r\n            <a\r\n              className={classes.link}\r\n              key={uuidv4()}\r\n              target=\"_blank\"\r\n              rel=\"noopener noreferrer\"\r\n              href={\r\n                \"api/about/logfile_python?name=\" + window.decodeURIComponent(c)\r\n              }\r\n              download\r\n            >\r\n              {c}\r\n            </a>\r\n          ))}\r\n        </Grid>\r\n        <Grid item xs={12} sm={6}>\r\n          <Typography variant=\"h5\">Core Log Files:</Typography>\r\n          {logFiles.map((c) => (\r\n            <a\r\n              className={classes.link}\r\n              key={uuidv4()}\r\n              target=\"_blank\"\r\n              rel=\"noopener noreferrer\"\r\n              href={\"api/about/logfile?name=\" + window.decodeURIComponent(c)}\r\n              download\r\n            >\r\n              {c}\r\n            </a>\r\n          ))}\r\n        </Grid>\r\n      </Grid>\r\n    </div>\r\n  );\r\n};\r\n\r\nLogFilesTabComp.propTypes = {\r\n  classes: PropTypes.object,\r\n  logFiles: PropTypes.array,\r\n  logFilesPython: PropTypes.array,\r\n};\r\n\r\nconst LogFilesTab = withStyles(styles)(LogFilesTabComp);\r\n\r\nconst AboutTab = (props) => {\r\n  const { version } = props;\r\n\r\n  return (\r\n    <div>\r\n      <Typography variant=\"h5\">Version:</Typography>\r\n      <br />\r\n      <p>\r\n        Copyright &copy; {new Date().getFullYear()} HS Analysis GmbH - All\r\n        Rights Reserved\r\n      </p>\r\n      <p>HSA Kit Version {version} (64-bit)</p>\r\n      <p>\r\n        <a\r\n          target=\"_blank\"\r\n          rel=\"noopener noreferrer\"\r\n          href=\"http://www.hs-analysis.com\"\r\n        >\r\n          https://www.hs-analysis.com\r\n        </a>\r\n      </p>\r\n      <p>\r\n        <a href=\"mailto:support@hs-analysis.com\">support@hs-analysis.com</a>\r\n      </p>\r\n      <p>This software is for research only.</p>\r\n      {/* hidden, because not working anymore, needs to be fixed */}\r\n      {/* <Typography variant=\"h5\">\r\n        Intranet URL ({localhostMode ? \"enabled\" : \"disabled\"}):\r\n      </Typography>\r\n      {localhostMode && (\r\n        <p>\r\n          <a href={intranetUrl}>{intranetUrl}</a>\r\n        </p>\r\n      )} */}\r\n    </div>\r\n  );\r\n};\r\n\r\nAboutTab.propTypes = {\r\n  version: PropTypes.string,\r\n  intranetUrl: PropTypes.string,\r\n  localhostMode: PropTypes.bool,\r\n};\r\n\r\nconst HelpTab = (props) => {\r\n  const { workflows } = props;\r\n\r\n  return (\r\n    <div>\r\n      <Typography variant=\"h5\">Handbook:</Typography>\r\n      <br />\r\n      <p>\r\n        <a target=\"_blank\" href=\"api/about/pdf?name=Handbook.pdf\" download>\r\n          Handbook.pdf\r\n        </a>\r\n      </p>\r\n      <Typography variant=\"h5\">Workflows:</Typography>\r\n      <br />\r\n      {workflows.map((c) => (\r\n        <p key={uuidv4()}>\r\n          <a\r\n            target=\"_blank\"\r\n            rel=\"noopener noreferrer\"\r\n            href={\"api/about/pdf?name=\" + window.decodeURIComponent(c)}\r\n            download\r\n          >\r\n            {c}\r\n          </a>\r\n        </p>\r\n      ))}\r\n      <br />\r\n      <Typography variant=\"h5\">Help:</Typography>\r\n      <br />\r\n      <p>\r\n        <a href=\"mailto:support@hs-analysis.com\">support@hs-analysis.com</a>\r\n      </p>\r\n    </div>\r\n  );\r\n};\r\n\r\nHelpTab.propTypes = {\r\n  workflows: PropTypes.array,\r\n};\r\n\r\nfunction ReleaseNotesTab(props) {\r\n  const releaseNotes = props.releaseNotes;\r\n\r\n  return (\r\n    <div>\r\n      <Typography variant=\"h5\">ReleaseNotes:</Typography>\r\n      <br />\r\n      <Table>\r\n        <TableBody>\r\n          {releaseNotes.map((c) => (\r\n            <TableRow key={uuidv4()}>\r\n              <TableCell align=\"left\">{c.version}</TableCell>\r\n              <TableCell align=\"left\">\r\n                <ul>\r\n                  {c.notes.map((note) => (\r\n                    <li key={uuidv4()}>{note}</li>\r\n                  ))}\r\n                </ul>\r\n              </TableCell>\r\n            </TableRow>\r\n          ))}\r\n        </TableBody>\r\n      </Table>\r\n    </div>\r\n  );\r\n}\r\n\r\nReleaseNotesTab.propTypes = {\r\n  releaseNotes: PropTypes.array,\r\n};\r\n\r\nclass AboutPage extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n    this.state = {\r\n      releaseNotes: \"[]\",\r\n      version: \"1.0.0\",\r\n      activeTab: 0,\r\n      buildDate: null,\r\n      canAccessLogFiles: false,\r\n      filteredWorkflows: [],\r\n    };\r\n    this.scrollRef = React.createRef();\r\n    Backend.getAbout((result) => {\r\n      this.setState(result);\r\n      this.setProjectTypeWorkflows(result);\r\n    });\r\n\r\n    Backend.getAbout((result) => {\r\n      console.log(\"about result:\", result);\r\n      this.setState(result);\r\n    });\r\n\r\n    Backend.getCurrentUser((user) => {\r\n      this.setState({\r\n        canAccessLogFiles: user.group.canAccessLogFiles,\r\n      });\r\n    });\r\n  }\r\n\r\n  setProjectTypeWorkflows = (aboutResult) => {\r\n    if (aboutResult.workflows) {\r\n      const workflows = aboutResult.workflows;\r\n      Backend.getLicensingInfo((license) => {\r\n        let filteredWorkflows = [];\r\n        if (license.activeModules.length > 0) {\r\n          filteredWorkflows = workflows.filter((workflow) => {\r\n            return license.activeModules.some((activeModule) =>\r\n              workflow.toLowerCase().includes(activeModule.label.toLowerCase())\r\n            );\r\n          });\r\n        } else {\r\n          filteredWorkflows = workflows;\r\n        }\r\n\r\n        this.setState({ filteredWorkflows });\r\n      });\r\n    }\r\n  };\r\n\r\n  handleChange = (event, newValue) => {\r\n    this.scrollRef.current.scrollTo(0, 0);\r\n    this.setState({ activeTab: newValue });\r\n  };\r\n\r\n  render() {\r\n    const { classes } = this.props;\r\n    const {\r\n      releaseNotes,\r\n      version,\r\n      activeTab,\r\n      filteredWorkflows,\r\n      intranetUrl,\r\n      localhostMode,\r\n      logFiles,\r\n      logFilesPython,\r\n      canAccessLogFiles,\r\n    } = this.state;\r\n\r\n    return (\r\n      <div className={classes.root}>\r\n        <CssBaseline />\r\n        <Container maxWidth=\"md\">\r\n          <Paper className={classes.paper}>\r\n            <Tabs\r\n              variant=\"fullWidth\"\r\n              indicatorColor=\"primary\"\r\n              textColor=\"primary\"\r\n              value={activeTab}\r\n              onChange={this.handleChange}\r\n            >\r\n              <Tab label=\"About\" />\r\n              <Tab label=\"Help / Handbooks\" />\r\n              <Tab label=\"Release Notes\" />\r\n              {canAccessLogFiles && <Tab label=\"Log Files\" />}\r\n            </Tabs>\r\n            <div\r\n              ref={this.scrollRef}\r\n              style={{\r\n                padding: 20,\r\n                maxHeight: \"calc(86vh - 64px - 48px)\",\r\n                overflow: \"auto\",\r\n              }}\r\n            >\r\n              {activeTab === 0 && (\r\n                <AboutTab\r\n                  version={version}\r\n                  intranetUrl={intranetUrl}\r\n                  localhostMode={localhostMode}\r\n                />\r\n              )}\r\n              {activeTab === 1 && <HelpTab workflows={filteredWorkflows} />}\r\n              {activeTab === 2 && (\r\n                <ReleaseNotesTab releaseNotes={releaseNotes} />\r\n              )}\r\n              {activeTab === 3 && canAccessLogFiles && (\r\n                <LogFilesTab\r\n                  logFiles={logFiles}\r\n                  logFilesPython={logFilesPython}\r\n                />\r\n              )}\r\n            </div>\r\n          </Paper>\r\n        </Container>\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nAboutPage.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  releaseNotes: PropTypes.array,\r\n};\r\n\r\nexport default withRouter(withStyles(styles)(AboutPage));\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n// import classnames from \"classnames\";\r\nimport { DialogTitle, Dialog, LinearProgress } from \"@mui/material\";\r\nimport CircularProgress from \"@mui/material/CircularProgress\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\nimport \"./Spinloader.css\";\r\n\r\nconst SpinloaderContext = React.createContext();\r\n\r\nexport const withSpinloader = (Component) => {\r\n  const WrappedComponent = (props) => (\r\n    <SpinloaderContext.Consumer>\r\n      {(context) => <Component {...props} spinloader={context} />}\r\n    </SpinloaderContext.Consumer>\r\n  );\r\n\r\n  WrappedComponent.displayName = `withSpinloader(${\r\n    Component.displayName || Component.name || \"Component\"\r\n  })`;\r\n\r\n  return WrappedComponent;\r\n};\r\n\r\nconst styles = () => ({\r\n  progressContainer: {\r\n    position: \"fixed\",\r\n    top: 64,\r\n    left: 0,\r\n    right: 390,\r\n    bottom: 0,\r\n    zIndex: 100000,\r\n    margin: \"auto\",\r\n    textAlign: \"center\",\r\n    height: 50,\r\n  },\r\n  dialog: { pointerEvents: \"none\", right: 500, top: 60 },\r\n  message: {\r\n    display: \"inline-block\",\r\n    position: \"relative\",\r\n    top: -10,\r\n    marginLeft: 10,\r\n  },\r\n  linearProgress: {\r\n    height: 10,\r\n  },\r\n  greyedOutBackground: {\r\n    background: \"rgba(0,0,0,0.5)\",\r\n    top: 0,\r\n    left: 0,\r\n    width: \"10000px\",\r\n    height: \"10000px\",\r\n    position: \"fixed\",\r\n    zIndex: 999999,\r\n  },\r\n});\r\n\r\n// this is the main component, it has to be added at the root of the app.\r\n// all components that use withSpinloader(...) will have access to it via this.props.spinloader...\r\nclass SpinloaderProvider extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n    this.state = {\r\n      rightWidth: 100,\r\n      show: false,\r\n      messagePresent: false,\r\n      message: \"\",\r\n      indefinite: true,\r\n      progress: 0,\r\n    };\r\n    this.timeout = null;\r\n    this.start_time = performance.now();\r\n  }\r\n  /**\r\n   * Shows an indefinte spinloader\r\n   */\r\n  show() {\r\n    this.start_time = performance.now();\r\n    if (!this.state.show) {\r\n      this.setState({\r\n        show: true,\r\n        messagePresent: false,\r\n        message: \"\",\r\n        indefinite: true,\r\n      });\r\n    }\r\n  }\r\n\r\n  /**\r\n   * Shows a progressbar with a prominent message above\r\n   * @param {JSON} progressObject JSON Object with message and progress {message: , progress: }\r\n   */\r\n  showWithProgress = (progressObject) => {\r\n    this.start_time = performance.now();\r\n    const progress = parseInt(progressObject.progress);\r\n    this.setState({\r\n      show: true,\r\n      messagePresent: true,\r\n      message: progressObject.message + \": \" + progress + \"%\",\r\n      progress: isNaN(progress) ? 0 : progress,\r\n      indefinite: false,\r\n    });\r\n    clearTimeout(this.timeout);\r\n  };\r\n\r\n  showWithAutoProgress = (message, seconds) => {\r\n    this.start_time = performance.now();\r\n    this.setState(\r\n      {\r\n        show: true,\r\n        messagePresent: true,\r\n        message: message,\r\n        progress: 0,\r\n        indefinite: false,\r\n        currentSecond: 0,\r\n        predictedSeconds: parseInt(seconds),\r\n      },\r\n      () => {\r\n        setTimeout(() => this.updateAutoProgress(), 1000);\r\n      }\r\n    );\r\n  };\r\n  updateAutoProgress = () => {\r\n    if (this.state.show) {\r\n      const progress =\r\n        (100 * this.state.currentSecond) / this.state.predictedSeconds;\r\n      this.setState({\r\n        currentSecond: this.state.currentSecond + 1,\r\n        progress: progress,\r\n      });\r\n      if (progress < 100) {\r\n        setTimeout(() => this.updateAutoProgress(), 1000);\r\n      } else {\r\n        this.showWithMessage(this.state.message);\r\n      }\r\n    }\r\n  };\r\n  /**\r\n   * Shows an indefinite loader with a prominent message above\r\n   * @param {String} message The info to be displayed\r\n   */\r\n  showWithMessage = (message) => {\r\n    this.start_time = performance.now();\r\n    this.setState({\r\n      show: true,\r\n      messagePresent: true,\r\n      message: message,\r\n      indefinite: true,\r\n    });\r\n  };\r\n\r\n  /**\r\n   * Shows Spinloader and hides it after a defined time to prevent constant blocking of the screen\r\n   * @param {int} scenesLeft Scenes to analyse. Used for delay calculation.\r\n   * @param {int} timeoutSeconds Seconds to wait until hiding spinloader\r\n   */\r\n  showWithTimeout(scenesLeft, timeoutSeconds = 30) {\r\n    this.start_time = performance.now();\r\n    let waitTime = 300000;\r\n    if (scenesLeft) {\r\n      waitTime = scenesLeft * timeoutSeconds * 1000;\r\n      waitTime = Math.max(waitTime, 60000);\r\n    }\r\n    this.setState({ show: true });\r\n    this.timeout = setTimeout(() => this.timeoutHide(), waitTime);\r\n  }\r\n\r\n  /**\r\n   *\r\n   * @param {*} scenesLeft\r\n   * @param {*} timeoutSeconds\r\n   */\r\n  resetTimer(scenesLeft, timeoutSeconds = 30) {\r\n    let waitTime = scenesLeft * timeoutSeconds * 1000;\r\n    waitTime = Math.min(waitTime, 60000);\r\n    clearTimeout(this.timeout);\r\n    if (scenesLeft > 0) {\r\n      this.timeout = setTimeout(() => this.timeoutHide(), waitTime);\r\n    } else {\r\n      this.hide();\r\n    }\r\n  }\r\n\r\n  measureTime = () => {\r\n    const executionTime = (performance.now() - this.start_time) / 1000;\r\n    if (executionTime > 10) {\r\n      const minutes = parseInt(executionTime / 60, 10);\r\n      const seconds = parseInt(executionTime % 60, 10);\r\n      const logMessage = `Spinner active time: ${minutes} minutes and ${seconds} seconds!`;\r\n      console.log(logMessage);\r\n      window.showWarningSnackbar(logMessage);\r\n    }\r\n  };\r\n\r\n  hide() {\r\n    if (this.state.show) {\r\n      this.measureTime();\r\n      clearTimeout(this.timeout);\r\n      this.setState({ show: false, messagePresent: false, message: \"\" });\r\n    }\r\n  }\r\n\r\n  timeoutHide() {\r\n    this.hide();\r\n    window.showWarningSnackbar(\r\n      \"Warning: Timeout! Process is taking especially long.\"\r\n    );\r\n  }\r\n\r\n  hideTimeDelayed(delay) {\r\n    setTimeout(() => {\r\n      this.hide();\r\n    }, delay);\r\n  }\r\n\r\n  load(func) {\r\n    this.setState({ show: true });\r\n    setTimeout(() => {\r\n      func();\r\n      this.setState({ show: false, messagePresent: false });\r\n    }, 0);\r\n  }\r\n\r\n  setRightWidth(width) {\r\n    this.setState({ rightWidth: width });\r\n  }\r\n\r\n  render() {\r\n    const { classes } = this.props;\r\n    return (\r\n      <SpinloaderContext.Provider\r\n        value={{\r\n          show: () => this.show(),\r\n          showWithTimeout: (numberScenes) => this.showWithTimeout(numberScenes),\r\n          showWithProgress: (progObject) => this.showWithProgress(progObject),\r\n          showWithAutoProgress: (message, seconds) =>\r\n            this.showWithAutoProgress(message, seconds),\r\n          showWithMessage: (message) => this.showWithMessage(message),\r\n          resetTimer: (numberRestScenes) => this.resetTimer(numberRestScenes),\r\n          hide: () => this.hide(),\r\n          hideTimeDelayed: (delay) => this.hideTimeDelayed(delay),\r\n          load: (callback) => this.load(callback),\r\n          setRightWidth: (width) => this.setRightWidth(width),\r\n        }}\r\n      >\r\n        {this.props.children}\r\n        {this.state.show && (\r\n          <div className={classes.greyedOutBackground}>\r\n            <div\r\n              style={{ right: this.state.rightWidth - 5 }}\r\n              className={classes.progressContainer}\r\n            >\r\n              {this.state.messagePresent ? (\r\n                // Dialog option for more text\r\n                <Dialog className={classes.dialog} open={true} hideBackdrop>\r\n                  <DialogTitle>\r\n                    <CircularProgress />\r\n                    <div className={classes.message}>{this.state.message}</div>\r\n                  </DialogTitle>\r\n                  {this.state.indefinite ? (\r\n                    <LinearProgress\r\n                      className={classes.linearProgress}\r\n                      style={{ height: 10 }}\r\n                    />\r\n                  ) : (\r\n                    <LinearProgress\r\n                      variant=\"determinate\"\r\n                      value={this.state.progress}\r\n                      style={{ height: 10 }}\r\n                    />\r\n                  )}\r\n                </Dialog>\r\n              ) : (\r\n                // Normal, indefinite spinloader\r\n                <CircularProgress className={classes.progress} size={50} />\r\n              )}\r\n            </div>\r\n          </div>\r\n        )}\r\n      </SpinloaderContext.Provider>\r\n    );\r\n  }\r\n}\r\n\r\nSpinloaderProvider.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  children: PropTypes.element.isRequired,\r\n};\r\n\r\nexport default withStyles(styles)(SpinloaderProvider);\r\n","import React, { useState, useEffect } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport Backend from \"../../common/utils/Backend\";\r\nimport { withSpinloader } from \"../../common/components/Spinloader\";\r\nimport {\r\n  TextField,\r\n  Typography,\r\n  CardActions,\r\n  Button,\r\n  Card,\r\n  CardContent,\r\n  Tooltip,\r\n} from \"@mui/material\";\r\n// import { makeStyles } from \"@mui/styles\";\r\n\r\n// const useStyles = makeStyles({\r\n//   root: {\r\n//     flexGrow: 1,\r\n//     width: \"100%\",\r\n//     height: \"calc(100vh - 64px - 48px)\",\r\n//     overflow: \"hidden\",\r\n//   },\r\n//   paper: {\r\n//     padding: 20,\r\n//     display: \"flex\",\r\n//     justifyContent: \"center\",\r\n//     alignItems: \"center\",\r\n//   },\r\n// });\r\n\r\nfunction SystemContainer(props) {\r\n  const [settings, setSettings] = useState(null);\r\n  // const classes = useStyles();\r\n\r\n  useEffect(() => {\r\n    Backend.readAppSettings().then((data) => {\r\n      setSettings(data);\r\n    });\r\n  }, []);\r\n\r\n  const saveClick = () => {\r\n    const tempSettings = { ...settings };\r\n    const { storagePath, tempPath, galleryOutputPath } = tempSettings;\r\n\r\n    let collection = [storagePath, tempPath, galleryOutputPath];\r\n    for (var [i, e] of collection.entries()) {\r\n      e = e.replace(/\\\\/g, \"/\");\r\n      while (e.includes(\"//\")) {\r\n        e = e.replace(\"//\", \"/\");\r\n      }\r\n      if (!e.endsWith(\"/\")) {\r\n        e = e + \"/\";\r\n      }\r\n      collection[i] = e;\r\n    }\r\n    tempSettings[\"storagePath\"] = collection[0];\r\n    tempSettings[\"tempPath\"] = collection[1];\r\n    tempSettings[\"galleryOutputPath\"] = collection[2];\r\n\r\n    setSettings(tempSettings);\r\n\r\n    Backend.writeAppSettings(settings, (data) => {\r\n      console.log(data);\r\n    });\r\n    window.location.reload();\r\n  };\r\n\r\n  const deleteTempFilesClick = () => {\r\n    window.openResponseDialog(\r\n      \"Delete temporary files folder? Imported files have to be imported again. Projects will not be affected.\",\r\n      (response) => {\r\n        if (response) {\r\n          props.spinloader.show();\r\n          Backend.deleteTempFiles((result) => {\r\n            props.spinloader.hide();\r\n            if (result.status && result.status === 403) {\r\n              window.showErrorSnackbar(\"No permission to use system actions!\");\r\n            } else {\r\n              if (result.success) {\r\n                if (result.deleted) {\r\n                  window.showSuccessSnackbar(\"Temp files folder deleted!\");\r\n                } else {\r\n                  window.showWarningSnackbar(\"No femp files folder found!\");\r\n                }\r\n              } else {\r\n                window.showErrorSnackbar(\"Temp files folder deleting failed!\");\r\n              }\r\n            }\r\n          });\r\n        }\r\n      }\r\n    );\r\n  };\r\n\r\n  return (\r\n    <Card>\r\n      <CardContent>\r\n        <Typography variant=\"h6\">System Actions</Typography>\r\n        <Tooltip\r\n          disableInteractive\r\n          title={\r\n            props.canUseSystemActions\r\n              ? \"Delete Temp Files for faster rendering!\"\r\n              : \"No Permission!\"\r\n          }\r\n        >\r\n          <span>\r\n            <Button\r\n              onClick={deleteTempFilesClick}\r\n              disabled={props.canUseSystemActions !== true}\r\n            >\r\n              Delete Temp Files\r\n            </Button>\r\n          </span>\r\n        </Tooltip>\r\n\r\n        <Typography variant=\"h6\">Job Scheduler</Typography>\r\n        <br />\r\n\r\n        {settings && (\r\n          <Tooltip\r\n            disableInteractive\r\n            title={\r\n              props.canSetJobRunTimes ? \"Start timed jobs\" : \"No Permission!\"\r\n            }\r\n          >\r\n            <span>\r\n              <TextField\r\n                disabled={!props.canSetJobRunTimes}\r\n                name=\"Textfield\"\r\n                id=\"time_start\"\r\n                label=\"Start\"\r\n                type=\"time\"\r\n                defaultValue={settings.schedulerStart}\r\n                onChange={(e) => {\r\n                  const tempSettings = { ...settings };\r\n                  tempSettings.schedulerStart = e.target.value;\r\n                  setSettings(tempSettings);\r\n                }}\r\n                InputLabelProps={{\r\n                  shrink: true,\r\n                }}\r\n                inputProps={{\r\n                  step: 300, // 5 min\r\n                }}\r\n              />\r\n            </span>\r\n          </Tooltip>\r\n        )}\r\n\r\n        <span> </span>\r\n        {settings && (\r\n          <Tooltip\r\n            disableInteractive\r\n            title={\r\n              props.canSetJobRunTimes\r\n                ? \"Stop starting timed jobs\"\r\n                : \"No Permission!\"\r\n            }\r\n          >\r\n            <span>\r\n              <TextField\r\n                disabled={props.canSetJobRunTimes !== true}\r\n                name=\"Textfield\"\r\n                id=\"time_end\"\r\n                label=\"End\"\r\n                type=\"time\"\r\n                defaultValue={settings.schedulerEnd}\r\n                onChange={(e) => {\r\n                  const tempSettings = { ...settings };\r\n                  tempSettings.schedulerEnd = e.target.value;\r\n                  setSettings(tempSettings);\r\n                }}\r\n                InputLabelProps={{\r\n                  shrink: true,\r\n                }}\r\n                inputProps={{\r\n                  step: 300, // 5 min\r\n                }}\r\n              />\r\n            </span>\r\n          </Tooltip>\r\n        )}\r\n      </CardContent>\r\n      <CardActions>\r\n        <Tooltip\r\n          disableInteractive\r\n          title={\r\n            props.canSetJobRunTimes ? \"Set Job to run later\" : \"No Permission!\"\r\n          }\r\n        >\r\n          <span>\r\n            <Button\r\n              variant=\"outlined\"\r\n              disabled={props.canSetJobRunTimes !== true}\r\n              size=\"small\"\r\n              color=\"primary\"\r\n              onClick={saveClick}\r\n            >\r\n              Save\r\n            </Button>\r\n          </span>\r\n        </Tooltip>\r\n      </CardActions>\r\n    </Card>\r\n  );\r\n}\r\n\r\nSystemContainer.propTypes = {\r\n  spinloader: PropTypes.object,\r\n  canSetJobRunTimes: PropTypes.bool,\r\n  canUseSystemActions: PropTypes.bool,\r\n};\r\n\r\nexport default withSpinloader(SystemContainer);\r\n","import React, { useState, useEffect } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport { makeStyles } from \"@mui/styles\";\r\nimport {\r\n  Button,\r\n  Dialog,\r\n  DialogTitle,\r\n  DialogContent,\r\n  TextField,\r\n  DialogActions,\r\n  Box,\r\n  Checkbox,\r\n  Tooltip,\r\n} from \"@mui/material\";\r\nimport Autocomplete from \"@mui/material/Autocomplete\";\r\nimport Backend from \"../../common/utils/Backend\";\r\n\r\nimport CheckBoxOutlineBlankIcon from \"@mui/icons-material/CheckBoxOutlineBlank\";\r\nimport CheckBoxIcon from \"@mui/icons-material/CheckBox\";\r\n\r\nconst icon = <CheckBoxOutlineBlankIcon fontSize=\"small\" />;\r\nconst checkedIcon = <CheckBoxIcon fontSize=\"small\" />;\r\n\r\nconst useStyles = makeStyles({\r\n  root: {\r\n    // autocomplete autside dialog possible\r\n    \"& .MuiPaper-root\": {\r\n      overflow: \"visible\",\r\n    },\r\n    \"& .MuiAutocomplete-popper\": {\r\n      border: \"2px solid #0673C1\",\r\n      borderRadius: \"5px\",\r\n    },\r\n  },\r\n});\r\n\r\nfunction UserDetailsDialog(props) {\r\n  const classes = useStyles();\r\n  const [user, setUser] = useState(null);\r\n  const [selectedGroups, setSelectedGroups] = useState([]);\r\n\r\n  useEffect(() => {\r\n    // dialog open\r\n    if (props.open && props.user.id) {\r\n      Backend.getUserGroups(props.user.id, (response) => {\r\n        let user = JSON.parse(JSON.stringify(props.user));\r\n        let selectedGroups = response;\r\n        setUser(user);\r\n        setSelectedGroups(selectedGroups);\r\n      });\r\n    } else {\r\n      setUser(JSON.parse(JSON.stringify(props.user)));\r\n      setSelectedGroups([]);\r\n    }\r\n  }, [props.open, props.user]);\r\n\r\n  const handleChange = (e) => {\r\n    const newUser = { ...user, [e.target.name]: e.target.value };\r\n    setUser(newUser);\r\n  };\r\n\r\n  return (\r\n    <Dialog\r\n      className={classes.root}\r\n      open={props.open}\r\n      onClose={props.onClose}\r\n      aria-labelledby=\"form-dialog-title\"\r\n    >\r\n      <DialogTitle id=\"form-dialog-title\">User Details</DialogTitle>\r\n      {user && (\r\n        <DialogContent>\r\n          <Box component=\"form\" noValidate autoComplete=\"off\">\r\n            <TextField\r\n              autoFocus\r\n              margin=\"dense\"\r\n              name=\"fullName\"\r\n              label=\"Full Name\"\r\n              fullWidth\r\n              value={user.fullName}\r\n              onChange={handleChange}\r\n            />\r\n            <TextField\r\n              disabled={!props.create}\r\n              margin=\"dense\"\r\n              name=\"email\"\r\n              label=\"Email\"\r\n              type=\"email\"\r\n              fullWidth\r\n              value={user.email}\r\n              onChange={handleChange}\r\n            />\r\n            <TextField\r\n              margin=\"dense\"\r\n              name=\"password\"\r\n              label=\"Password\"\r\n              type=\"password\"\r\n              autoComplete=\"on\"\r\n              fullWidth\r\n              value={user.password ? user.password : \"\"}\r\n              onChange={handleChange}\r\n            />\r\n            <Tooltip\r\n              disableInteractive\r\n              title={\r\n                props.canEditUserGroups ? \"Edit User Group\" : \"No Permission!\"\r\n              }\r\n            >\r\n              <span>\r\n                <Autocomplete\r\n                  disabled={!props.canEditUserGroups}\r\n                  disablePortal\r\n                  style={{ marginTop: 5 }}\r\n                  options={props.groups}\r\n                  multiple\r\n                  getOptionLabel={(option) => option.name}\r\n                  isOptionEqualToValue={(option, value) =>\r\n                    option.id === value.id\r\n                  }\r\n                  value={selectedGroups}\r\n                  onChange={(event, newValue) => {\r\n                    setSelectedGroups(newValue);\r\n                  }}\r\n                  renderInput={(params) => (\r\n                    <TextField {...params} label=\"Groups\" name=\"Textfield\" />\r\n                  )}\r\n                  renderOption={(props, option, { selected }) => (\r\n                    <li {...props}>\r\n                      <Checkbox\r\n                        name=\"CheckboxOption\"\r\n                        icon={icon}\r\n                        checkedIcon={checkedIcon}\r\n                        style={{ marginRight: 8 }}\r\n                        checked={selected}\r\n                      />\r\n                      {option.name}\r\n                    </li>\r\n                  )}\r\n                />\r\n              </span>\r\n            </Tooltip>\r\n          </Box>\r\n        </DialogContent>\r\n      )}\r\n      <DialogActions>\r\n        <Button onClick={props.onClose} color=\"primary\">\r\n          Cancel\r\n        </Button>\r\n        <Button\r\n          onClick={() => props.onApply(user, selectedGroups)}\r\n          color=\"primary\"\r\n        >\r\n          Apply\r\n        </Button>\r\n      </DialogActions>\r\n    </Dialog>\r\n  );\r\n}\r\n\r\nUserDetailsDialog.propTypes = {\r\n  classes: PropTypes.object,\r\n  open: PropTypes.bool,\r\n  user: PropTypes.object,\r\n  groups: PropTypes.array,\r\n  onClose: PropTypes.func,\r\n  onApply: PropTypes.func,\r\n  create: PropTypes.bool,\r\n  canEditUserGroups: PropTypes.bool,\r\n};\r\n\r\nexport default UserDetailsDialog;\r\n","import React, { useState, useEffect } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport Backend from \"../../common/utils/Backend\";\r\nimport {\r\n  IconButton,\r\n  TableRow,\r\n  TableCell,\r\n  TableHead,\r\n  Table,\r\n  TableBody,\r\n  Button,\r\n  Card,\r\n  CardContent,\r\n  Typography,\r\n  CardActions,\r\n  Tooltip,\r\n  Chip,\r\n} from \"@mui/material\";\r\nimport { makeStyles } from \"@mui/styles\";\r\n// Icons\r\nimport DeleteIcon from \"@mui/icons-material/Delete\";\r\nimport EditIcon from \"@mui/icons-material/Edit\";\r\n\r\nimport UserDetailsDialog from \"./UserDetailsDialog\";\r\n\r\nconst useStyles = makeStyles(() => ({\r\n  table: {\r\n    minWidth: 650,\r\n  },\r\n  paper: {\r\n    padding: 20,\r\n    display: \"flex\",\r\n    justifyContent: \"center\",\r\n    alignItems: \"center\",\r\n  },\r\n  chip: {\r\n    margin: 2,\r\n  },\r\n}));\r\n\r\nfunction TableRowRender(props) {\r\n  const { user, canEditUsers, deleteUser, handleUserEdit } = props;\r\n  const classes = useStyles();\r\n\r\n  const editTooltipTitle = canEditUsers\r\n    ? \"Edit user details\"\r\n    : \"No Permission!\";\r\n  const deleteTooltipTitle = canEditUsers\r\n    ? \"Delete user forever\"\r\n    : \"No Permission!\";\r\n\r\n  return (\r\n    <TableRow key={user.id}>\r\n      <TableCell component=\"th\" scope=\"row\">\r\n        {user.fullName}\r\n      </TableCell>\r\n      <TableCell align=\"right\">{user.email}</TableCell>\r\n      <TableCell align=\"right\">\r\n        {user.groups.map((group, groupIdx) => {\r\n          return (\r\n            <Chip key={groupIdx} className={classes.chip} label={group.name} />\r\n          );\r\n        })}\r\n      </TableCell>\r\n      <TableCell align=\"right\">\r\n        {user.fullName !== \"HSA\" && [\r\n          <Tooltip key=\"1\" disableInteractive title={editTooltipTitle}>\r\n            <span>\r\n              <IconButton\r\n                disabled={canEditUsers !== true}\r\n                onClick={() => handleUserEdit(user)}\r\n                size=\"large\"\r\n              >\r\n                <EditIcon />\r\n              </IconButton>\r\n            </span>\r\n          </Tooltip>,\r\n          <Tooltip key=\"2\" disableInteractive title={deleteTooltipTitle}>\r\n            <span>\r\n              <IconButton\r\n                disabled={canEditUsers !== true}\r\n                onClick={() => deleteUser(user.id)}\r\n                size=\"large\"\r\n              >\r\n                <DeleteIcon />\r\n              </IconButton>\r\n            </span>\r\n          </Tooltip>,\r\n        ]}\r\n      </TableCell>\r\n    </TableRow>\r\n  );\r\n}\r\n\r\nTableRowRender.propTypes = {\r\n  user: PropTypes.object.isRequired,\r\n  canEditUsers: PropTypes.bool.isRequired,\r\n  deleteUser: PropTypes.func.isRequired,\r\n  handleUserEdit: PropTypes.func.isRequired,\r\n};\r\n\r\nfunction UsersContainer(props) {\r\n  const [userDetails, setUserDetails] = useState(null);\r\n  const [create, setCreate] = useState(false);\r\n  const classes = useStyles();\r\n\r\n  useEffect(() => {\r\n    props.updateGroups();\r\n  }, []);\r\n\r\n  const handleBackendResponse = (res, successCallback) => {\r\n    if (res.success !== undefined && res.success === true) {\r\n      successCallback();\r\n    } else if (res.status !== undefined && res.status === 403) {\r\n      window.showErrorSnackbar(\"No permission to edit users!\");\r\n    } else {\r\n      window.showErrorSnackbar(\"Something went wrong!\");\r\n    }\r\n  };\r\n\r\n  const onUserEdit = (e, userGroups) => {\r\n    if (create) {\r\n      Backend.createUser(e, (res) => {\r\n        handleBackendResponse(res, () => {\r\n          Backend.updateUserGroups(res.user.id, userGroups, () => {\r\n            props.updateUserList();\r\n          });\r\n        });\r\n      });\r\n    } else {\r\n      Backend.updateUser(e, (res) => {\r\n        handleBackendResponse(res, () => {\r\n          Backend.updateUserGroups(e.id, userGroups, () => {\r\n            props.updateUserList();\r\n          });\r\n        });\r\n      });\r\n    }\r\n    setUserDetails(null);\r\n    setCreate(false);\r\n  };\r\n\r\n  const deleteUser = (id) => {\r\n    window.openResponseDialog(\"Delete user forever?\", (response) => {\r\n      if (response) {\r\n        Backend.deleteUser(id, (res) => {\r\n          handleBackendResponse(res, () => {\r\n            props.updateUserList();\r\n          });\r\n        });\r\n      }\r\n    });\r\n  };\r\n\r\n  const newUserClick = () => {\r\n    setUserDetails({\r\n      email: \"\",\r\n      fullName: \"\",\r\n      role: \"User\",\r\n      password: \"\",\r\n    });\r\n    setCreate(true);\r\n  };\r\n\r\n  return (\r\n    <Card>\r\n      <CardContent>\r\n        <Typography variant=\"h6\">Users</Typography>\r\n        <Table className={classes.table} size=\"small\">\r\n          <TableHead>\r\n            <TableRow>\r\n              <TableCell>Full Name</TableCell>\r\n              <TableCell align=\"right\">Email</TableCell>\r\n              <TableCell align=\"right\">Groups</TableCell>\r\n              <TableCell align=\"right\">Actions</TableCell>\r\n            </TableRow>\r\n          </TableHead>\r\n          <TableBody>\r\n            {props.users &&\r\n              props.users.map((user) => (\r\n                <TableRowRender\r\n                  key={user.id}\r\n                  user={user}\r\n                  canEditUsers={props.canEditUsers}\r\n                  deleteUser={deleteUser}\r\n                  handleUserEdit={setUserDetails}\r\n                />\r\n              ))}\r\n          </TableBody>\r\n        </Table>\r\n      </CardContent>\r\n      <CardActions>\r\n        <Button\r\n          variant=\"outlined\"\r\n          size=\"small\"\r\n          color=\"primary\"\r\n          onClick={newUserClick}\r\n        >\r\n          Add new User\r\n        </Button>\r\n      </CardActions>\r\n      <UserDetailsDialog\r\n        open={Boolean(userDetails)}\r\n        create={create}\r\n        groups={props.groups}\r\n        user={userDetails}\r\n        onApply={onUserEdit}\r\n        onClose={() => {\r\n          setUserDetails(null);\r\n          setCreate(false);\r\n        }}\r\n        canEditUserGroups={props.canEditUserGroups}\r\n      />\r\n    </Card>\r\n  );\r\n}\r\n\r\nUsersContainer.propTypes = {\r\n  open: PropTypes.bool,\r\n  groups: PropTypes.array,\r\n  updateGroups: PropTypes.func,\r\n  users: PropTypes.array,\r\n  updateUserList: PropTypes.func,\r\n  canEditUsers: PropTypes.bool,\r\n  canEditUserGroups: PropTypes.bool,\r\n};\r\n\r\nexport default UsersContainer;\r\n","import React from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n\r\nimport { FormControl, InputLabel, Select, MenuItem } from \"@mui/material\";\r\n\r\nconst styles = {\r\n  root: {},\r\n  selectContainer: {\r\n    margin: \"10px 0\",\r\n  },\r\n};\r\n\r\nclass CustomListSelector extends React.Component {\r\n  render() {\r\n    const { classes, optionsList, selectedIdx, onChange } = this.props;\r\n    return (\r\n      <div className={classes.root}>\r\n        <FormControl\r\n          className={classes.selectContainer}\r\n          component=\"fieldset\"\r\n          sx={{ m: 1, minWidth: 150 }}\r\n          margin=\"dense\"\r\n          fullWidth\r\n        >\r\n          <InputLabel htmlFor={optionsList[selectedIdx]}>\r\n            {this.props.label}\r\n          </InputLabel>\r\n          <Select\r\n            name=\"SelectListItem\"\r\n            label={this.props.label}\r\n            value={selectedIdx}\r\n            onChange={(e) => onChange(e.target.value)}\r\n          >\r\n            {optionsList.map((value, idx) => (\r\n              <MenuItem key={idx} value={idx}>\r\n                {value}\r\n              </MenuItem>\r\n            ))}\r\n          </Select>\r\n        </FormControl>\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nCustomListSelector.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  label: PropTypes.string.isRequired,\r\n  selectedIdx: PropTypes.number.isRequired,\r\n  optionsList: PropTypes.array.isRequired,\r\n  onChange: PropTypes.func.isRequired,\r\n};\r\n\r\nexport default withStyles(styles)(CustomListSelector);\r\n","import React from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\nimport {\r\n  Button,\r\n  Dialog,\r\n  DialogTitle,\r\n  DialogContent,\r\n  TextField,\r\n  DialogActions,\r\n  FormGroup,\r\n  FormControlLabel,\r\n  Checkbox,\r\n  Typography,\r\n} from \"@mui/material\";\r\nimport Backend from \"../../common/utils/Backend\";\r\nimport CustomListSelector from \"../../globalComponents/CustomListSelector\";\r\nconst styles = () => ({\r\n  container: {\r\n    display: \"grid\",\r\n    gridTemplateColumns: \"1fr 1fr\",\r\n    marginTop: 5,\r\n  },\r\n  column: {\r\n    border: \"2px solid rgb(218, 218, 218)\",\r\n    padding: 10,\r\n  },\r\n  columnHeadline: { fontSize: 16, marginBottom: 10 },\r\n});\r\nconst defaultCheckboxAdminData = {\r\n  canImportProjects: {\r\n    label: \"Import Projects\",\r\n    checked: false,\r\n  },\r\n  canAccessLogFiles: {\r\n    label: \"Access Log Files\",\r\n    checked: false,\r\n  },\r\n  canExportModels: {\r\n    label: \"Export AI Models\",\r\n    checked: false,\r\n  },\r\n  canImportModels: {\r\n    label: \"Import AI Models\",\r\n    checked: false,\r\n  },\r\n  canEditGroups: {\r\n    label: \"Edit Group\",\r\n    checked: false,\r\n  },\r\n  canAccessAdminPage: {\r\n    label: \"Access Admin Page\",\r\n    checked: false,\r\n  },\r\n  canUseSystemActions: {\r\n    label: \"Use System Actions\",\r\n    checked: false,\r\n  },\r\n  canSetJobRunTimes: {\r\n    label: \"Set Job Run Times\",\r\n    checked: false,\r\n  },\r\n  canAccessLicensingPage: {\r\n    label: \"Access Licensing Page\",\r\n    checked: false,\r\n  },\r\n  canEditUsers: {\r\n    label: \"Edit Users\",\r\n    checked: false,\r\n  },\r\n  canEditAutoImportSettings: {\r\n    label: \"Edit auto import settings\",\r\n    checked: false,\r\n  },\r\n  canEditUserGroups: {\r\n    label: \"Edit User Groups\",\r\n    checked: false,\r\n  },\r\n  canAccessAllUserActions: {\r\n    label: \"Access All User Actions\",\r\n    checked: false,\r\n  },\r\n  canCreateModules: {\r\n    label: \"Create Project Modules\",\r\n    checked: false,\r\n  },\r\n};\r\n\r\nconst defaultCheckboxProjectData = {\r\n  isProjectVisible: {\r\n    label: \"Project visible for group members\",\r\n    checked: false,\r\n  },\r\n  canOpenProject: {\r\n    label: \"Open project\",\r\n    checked: false,\r\n  },\r\n  canAccessResults: {\r\n    label: \"Access Results\",\r\n    checked: false,\r\n  },\r\n  canComment: {\r\n    label: \"Comment\",\r\n    checked: false,\r\n  },\r\n  canAnnotate: {\r\n    label: \"Annotate\",\r\n    checked: false,\r\n  },\r\n  canEditStructures: {\r\n    label: \"Edit structures\",\r\n    checked: false,\r\n  },\r\n  canRunJob: {\r\n    label: \"Run job\",\r\n    checked: false,\r\n  },\r\n  canAccessAITab: {\r\n    label: \"Access AI Tab\",\r\n    checked: false,\r\n  },\r\n  canEditAITabSettings: {\r\n    label: \"Edit AI Tab Settings\",\r\n    checked: false,\r\n  },\r\n  canTrainModel: {\r\n    label: \"Train models\",\r\n    checked: false,\r\n  },\r\n  canEditProjectProperties: {\r\n    label: \"Edit project properties\",\r\n    checked: false,\r\n  },\r\n};\r\n\r\nclass GroupDetailsDialog extends React.Component {\r\n  constructor(props) {\r\n    super(props);\r\n    this.state = {\r\n      groupName: props.group === null ? \"\" : props.group.name,\r\n      nameError: false,\r\n      presetAdminIdx: 0,\r\n      presetProjectIdx: 0,\r\n    };\r\n    this.checkboxAdminData = JSON.parse(\r\n      JSON.stringify(defaultCheckboxAdminData)\r\n    );\r\n    this.checkboxProjectData = JSON.parse(\r\n      JSON.stringify(defaultCheckboxProjectData)\r\n    );\r\n\r\n    this.presetAdminOptionsList = [\r\n      \"Not Selected\",\r\n      \"Minimal\",\r\n      \"User\",\r\n      \"User AI\",\r\n      \"Admin\",\r\n      \"Super Admin\",\r\n    ];\r\n    this.presetProjectOptionsList = [\r\n      \"Not Selected\",\r\n      \"No Presets\",\r\n      \"Viewing\",\r\n      \"Annotating\",\r\n      \"Annotating and Training\",\r\n      \"Admin\",\r\n    ];\r\n  }\r\n  componentDidMount = () => {\r\n    this.updateCheckboxes();\r\n  };\r\n  resetDetails = () => {\r\n    this.checkboxAdminData = JSON.parse(\r\n      JSON.stringify(defaultCheckboxAdminData)\r\n    );\r\n    this.checkboxProjectData = JSON.parse(\r\n      JSON.stringify(defaultCheckboxProjectData)\r\n    );\r\n    this.setState({ groupName: \"\" });\r\n  };\r\n  updateCheckboxes = () => {\r\n    if (this.props.group !== null) {\r\n      for (const [key, value] of Object.entries(this.props.group)) {\r\n        if (typeof value === \"boolean\") {\r\n          if (this.checkboxAdminData[key]) {\r\n            this.checkboxAdminData[key].checked = value;\r\n          } else if (this.checkboxProjectData[key]) {\r\n            this.checkboxProjectData[key].checked = value;\r\n          }\r\n        } else if (key === \"name\") {\r\n          this.setState({\r\n            groupName: value,\r\n          });\r\n        }\r\n      }\r\n    }\r\n    this.setState({\r\n      presetAdminIdx: 0,\r\n      presetProjectIdx: 0,\r\n    });\r\n  };\r\n  componentDidUpdate = (prevProps) => {\r\n    if (prevProps.group === null && this.props.group !== null) {\r\n      this.updateCheckboxes();\r\n    }\r\n  };\r\n\r\n  onApply = () => {\r\n    let group = {\r\n      name: this.state.groupName,\r\n    };\r\n    for (const [key, value] of Object.entries(this.checkboxAdminData)) {\r\n      group[key] = value.checked;\r\n    }\r\n    for (const [key, value] of Object.entries(this.checkboxProjectData)) {\r\n      group[key] = value.checked;\r\n    }\r\n    if (this.props.group) {\r\n      group.id = this.props.group.id;\r\n      Backend.updateGroup(group, (res) => {\r\n        if (res === true || res.success === true) {\r\n          this.resetDetails();\r\n          this.props.onApply();\r\n          window.showSuccessSnackbar(\"saved!\");\r\n        }\r\n      });\r\n    } else {\r\n      Backend.createGroup(group, (res) => {\r\n        if (res.success === true) {\r\n          this.resetDetails();\r\n          this.props.onApply();\r\n          window.showSuccessSnackbar(\"Group created!\");\r\n        }\r\n      });\r\n    }\r\n  };\r\n\r\n  onClose = () => {\r\n    this.resetDetails();\r\n    this.props.onClose();\r\n  };\r\n\r\n  // set checkbox, if user has that permission\r\n  setcheckboxAdminDataValue = (key, value) => {\r\n    if (this.props.user.group[key]) {\r\n      this.checkboxAdminData[key].checked = value;\r\n    }\r\n  };\r\n\r\n  onAdminPresetChange = (value) => {\r\n    if (value === 0) return; // no changes\r\n    let updateObject = {\r\n      presetAdminIdx: value,\r\n    };\r\n    for (let key of Object.keys(this.checkboxAdminData)) {\r\n      this.setcheckboxAdminDataValue(key, false);\r\n    }\r\n\r\n    switch (value) {\r\n      case 5: // Super Admin\r\n        this.setcheckboxAdminDataValue(\"canCreateModules\", true);\r\n      // falls through\r\n      case 4: //Admin\r\n        this.setcheckboxAdminDataValue(\"canEditGroups\", true);\r\n        this.setcheckboxAdminDataValue(\"canAccessAdminPage\", true);\r\n        this.setcheckboxAdminDataValue(\"canUseSystemActions\", true);\r\n        this.setcheckboxAdminDataValue(\"canSetJobRunTimes\", true);\r\n        this.setcheckboxAdminDataValue(\"canAccessLicensingPage\", true);\r\n        this.setcheckboxAdminDataValue(\"canEditUsers\", true);\r\n        this.setcheckboxAdminDataValue(\"canEditAutoImportSettings\", true);\r\n        this.setcheckboxAdminDataValue(\"canEditUserGroups\", true);\r\n        this.setcheckboxAdminDataValue(\"canAccessAllUserActions\", true);\r\n      // falls through\r\n      case 3: // User AI\r\n        this.setcheckboxAdminDataValue(\"canExportModels\", true);\r\n        this.setcheckboxAdminDataValue(\"canImportModels\", true);\r\n      // falls through\r\n      case 2: // User\r\n        this.setcheckboxAdminDataValue(\"canAccessLogFiles\", true);\r\n        this.setcheckboxAdminDataValue(\"canImportProjects\", true);\r\n    }\r\n    if (\r\n      this.state.groupName === \"\" ||\r\n      this.presetAdminOptionsList.includes(this.state.groupName)\r\n    ) {\r\n      this.updateGroupName(this.presetAdminOptionsList[value]);\r\n    }\r\n    this.setState(updateObject);\r\n  };\r\n\r\n  // if validation to check needed, set here\r\n  setCheckboxProjectData = (key, value) => {\r\n    this.checkboxProjectData[key].checked = value;\r\n  };\r\n\r\n  onProjectPresetChange = (value) => {\r\n    if (value === 0) return; // no changes\r\n    let updateObject = {\r\n      presetProjectIdx: value,\r\n    };\r\n\r\n    for (let key of Object.keys(this.checkboxProjectData)) {\r\n      this.setCheckboxProjectData(key, false);\r\n    }\r\n\r\n    switch (value) {\r\n      case 5: // Admin\r\n        this.setCheckboxProjectData(\"canEditProjectProperties\", true);\r\n      // falls through\r\n      case 4: // Annotating and Training\r\n        this.setCheckboxProjectData(\"canTrainModel\", true);\r\n        this.setCheckboxProjectData(\"canEditAITabSettings\", true);\r\n        this.setCheckboxProjectData(\"canAccessAITab\", true);\r\n      // falls through\r\n      case 3: // Annotating\r\n        this.setCheckboxProjectData(\"canEditStructures\", true);\r\n        this.setCheckboxProjectData(\"canAnnotate\", true);\r\n        this.setCheckboxProjectData(\"canComment\", true);\r\n        this.setCheckboxProjectData(\"canRunJob\", true);\r\n      // falls through\r\n      case 2: // Viewing\r\n        this.setCheckboxProjectData(\"canAccessResults\", true);\r\n        this.setCheckboxProjectData(\"canOpenProject\", true);\r\n    }\r\n    this.setState(updateObject);\r\n  };\r\n\r\n  onAdminPermissionCheckboxChange = (e, item) => {\r\n    item.checked = e.target.checked;\r\n    this.forceUpdate();\r\n  };\r\n\r\n  onProjectPermissionCheckboxChange = (e, key, item) => {\r\n    item.checked = e.target.checked;\r\n    if (key === \"canOpenProject\" && !item.checked) {\r\n      this.checkboxProjectData.canEditProjectProperties.checked = false;\r\n      this.checkboxProjectData.canTrainModel.checked = false;\r\n      this.checkboxProjectData.canEditAITabSettings.checked = false;\r\n      this.checkboxProjectData.canAccessAITab.checked = false;\r\n      this.checkboxProjectData.canEditStructures.checked = false;\r\n      this.checkboxProjectData.canAnnotate.checked = false;\r\n      this.checkboxProjectData.canComment.checked = false;\r\n      this.checkboxProjectData.canAccessResults.checked = false;\r\n      this.checkboxProjectData.canRunJob.checked = false;\r\n    } else if (key === \"canAccessAITab\" && !item.checked) {\r\n      this.checkboxProjectData.canEditAITabSettings.checked = false;\r\n      this.checkboxProjectData.canTrainModel.checked = false;\r\n    }\r\n    this.forceUpdate();\r\n  };\r\n\r\n  updateGroupName = (newGroupName) => {\r\n    let nameError = newGroupName === \"\";\r\n    if (!nameError) {\r\n      let groupWithSameName = this.props.groups.find(\r\n        (group) => group.name === newGroupName\r\n      );\r\n      nameError = !(typeof groupWithSameName === \"undefined\");\r\n      if (this.props.group) {\r\n        if (groupWithSameName && this.props.group.id === groupWithSameName.id) {\r\n          nameError = false;\r\n        }\r\n      }\r\n    }\r\n    this.setState({\r\n      groupName: newGroupName,\r\n      nameError: nameError,\r\n    });\r\n  };\r\n\r\n  render() {\r\n    const { groupName, nameError, presetAdminIdx, presetProjectIdx } =\r\n      this.state;\r\n    const { classes, open } = this.props;\r\n\r\n    return (\r\n      <Dialog\r\n        open={open}\r\n        onClose={this.onClose}\r\n        aria-labelledby=\"form-dialog-title\"\r\n      >\r\n        <DialogTitle id=\"form-dialog-title\">Group Details</DialogTitle>\r\n        <DialogContent>\r\n          <TextField\r\n            autoFocus\r\n            error={nameError}\r\n            margin=\"dense\"\r\n            name=\"name\"\r\n            label=\"Name\"\r\n            fullWidth\r\n            value={groupName}\r\n            onChange={(e) => {\r\n              this.updateGroupName(e.target.value);\r\n            }}\r\n          />\r\n          <div className={classes.container}>\r\n            <div className={classes.column}>\r\n              <Typography variant=\"h6\" className={classes.columnHeadline}>\r\n                Admin Permissions:\r\n              </Typography>\r\n              <CustomListSelector\r\n                label=\"Presets\"\r\n                optionsList={this.presetAdminOptionsList}\r\n                selectedIdx={presetAdminIdx}\r\n                onChange={this.onAdminPresetChange}\r\n              />\r\n\r\n              <FormGroup>\r\n                {Object.keys(this.checkboxAdminData).map((key, idx) => {\r\n                  const item = this.checkboxAdminData[key];\r\n                  return (\r\n                    <FormControlLabel\r\n                      disabled={this.props.user.group[key] === false}\r\n                      key={idx}\r\n                      control={\r\n                        <Checkbox\r\n                          name=\"CheckboxAdminPermission\"\r\n                          checked={item.checked}\r\n                          onChange={(e) => {\r\n                            this.onAdminPermissionCheckboxChange(e, item);\r\n                          }}\r\n                        />\r\n                      }\r\n                      label={item.label}\r\n                    />\r\n                  );\r\n                })}\r\n              </FormGroup>\r\n            </div>\r\n            <div className={classes.column}>\r\n              <Typography variant=\"h6\" className={classes.columnHeadline}>\r\n                Default Project Permissions:\r\n              </Typography>\r\n              <CustomListSelector\r\n                label=\"Presets\"\r\n                optionsList={this.presetProjectOptionsList}\r\n                selectedIdx={presetProjectIdx}\r\n                onChange={this.onProjectPresetChange}\r\n              />\r\n              <FormGroup>\r\n                {Object.keys(this.checkboxProjectData).map((key, idx) => {\r\n                  const item = this.checkboxProjectData[key];\r\n                  return (\r\n                    <FormControlLabel\r\n                      key={idx}\r\n                      control={\r\n                        <Checkbox\r\n                          name=\"CheckboxProjectPermission\"\r\n                          checked={item.checked}\r\n                          onChange={(e) => {\r\n                            this.onProjectPermissionCheckboxChange(\r\n                              e,\r\n                              key,\r\n                              item\r\n                            );\r\n                          }}\r\n                        />\r\n                      }\r\n                      label={item.label}\r\n                    />\r\n                  );\r\n                })}\r\n              </FormGroup>\r\n            </div>\r\n          </div>\r\n        </DialogContent>\r\n        <DialogActions>\r\n          <Button onClick={this.onClose} color=\"primary\">\r\n            Cancel\r\n          </Button>\r\n          <Button disabled={nameError} onClick={this.onApply} color=\"primary\">\r\n            Apply\r\n          </Button>\r\n        </DialogActions>\r\n      </Dialog>\r\n    );\r\n  }\r\n}\r\n\r\nGroupDetailsDialog.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  open: PropTypes.bool,\r\n  user: PropTypes.object,\r\n  group: PropTypes.object,\r\n  groups: PropTypes.array,\r\n  onClose: PropTypes.func,\r\n  onApply: PropTypes.func,\r\n};\r\n\r\nexport default withStyles(styles)(GroupDetailsDialog);\r\n","import React, { useState, useEffect } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport Backend from \"../../common/utils/Backend\";\r\nimport {\r\n  IconButton,\r\n  TableRow,\r\n  TableCell,\r\n  TableHead,\r\n  Table,\r\n  TableBody,\r\n  Button,\r\n  Card,\r\n  CardContent,\r\n  Typography,\r\n  CardActions,\r\n  Tooltip,\r\n} from \"@mui/material\";\r\nimport { makeStyles } from \"@mui/styles\";\r\n\r\n// Icons\r\nimport DeleteIcon from \"@mui/icons-material/Delete\";\r\nimport EditIcon from \"@mui/icons-material/Edit\";\r\n\r\nimport GroupDetailsDialog from \"./GroupDetailsDialog\";\r\n\r\nconst useStyles = makeStyles({\r\n  paper: {\r\n    padding: 20,\r\n    display: \"flex\",\r\n    justifyContent: \"center\",\r\n    alignItems: \"center\",\r\n  },\r\n});\r\n\r\nfunction GroupsContainer(props) {\r\n  const [groupDetailsOpen, setGroupDetailsOpen] = useState(false);\r\n  const [group, setGroup] = useState(null);\r\n\r\n  const classes = useStyles();\r\n  const { user, userGroupIds } = props;\r\n\r\n  useEffect(() => {\r\n    props.updateGroups();\r\n  }, []);\r\n\r\n  const newGroupClick = () => {\r\n    setGroup(null);\r\n    setGroupDetailsOpen(true);\r\n  };\r\n\r\n  const deleteGroup = (id) => {\r\n    window.openResponseDialog(\"Delete Group forever?\", (response) => {\r\n      if (response) {\r\n        Backend.deleteGroup(id, (res) => {\r\n          if (res.success === true) {\r\n            props.updateGroups();\r\n            window.showSuccessSnackbar(\"Group deleted!\");\r\n          }\r\n        });\r\n      }\r\n    });\r\n  };\r\n\r\n  const editGroup = (group) => {\r\n    setGroup(group);\r\n    setGroupDetailsOpen(true);\r\n  };\r\n\r\n  return (\r\n    <Card>\r\n      <CardContent>\r\n        <Typography variant=\"h6\">Groups</Typography>\r\n        <Table className={classes.table} size=\"small\">\r\n          <TableHead>\r\n            <TableRow>\r\n              <TableCell>Group Name</TableCell>\r\n              <TableCell align=\"right\">Actions</TableCell>\r\n            </TableRow>\r\n          </TableHead>\r\n          <TableBody>\r\n            {props.groups &&\r\n              props.groups.map((group, idx) => {\r\n                const groupCanBeEdited =\r\n                  props.isSuperAdmin ||\r\n                  (user.group.canEditGroups === true &&\r\n                    !userGroupIds.includes(group.id));\r\n                return (\r\n                  <TableRow key={group.id}>\r\n                    <TableCell component=\"th\" scope=\"row\">\r\n                      {group.name}\r\n                    </TableCell>\r\n                    <TableCell align=\"right\">\r\n                      {idx > 0 && [\r\n                        <Tooltip\r\n                          key=\"grpEditBtn\"\r\n                          disableInteractive\r\n                          title={\r\n                            groupCanBeEdited\r\n                              ? \"Edit Group details\"\r\n                              : \"No Permission\"\r\n                          }\r\n                        >\r\n                          <span>\r\n                            <IconButton\r\n                              disabled={!groupCanBeEdited}\r\n                              onClick={() => editGroup(group)}\r\n                              size=\"large\"\r\n                            >\r\n                              <EditIcon />\r\n                            </IconButton>\r\n                          </span>\r\n                        </Tooltip>,\r\n                        <Tooltip\r\n                          key=\"grpDeleteBtn\"\r\n                          disableInteractive\r\n                          title={\r\n                            groupCanBeEdited\r\n                              ? \"Delete group forever\"\r\n                              : \"No Permission\"\r\n                          }\r\n                        >\r\n                          <span>\r\n                            <IconButton\r\n                              disabled={!groupCanBeEdited}\r\n                              onClick={() => deleteGroup(group.id)}\r\n                              size=\"large\"\r\n                            >\r\n                              <DeleteIcon />\r\n                            </IconButton>\r\n                          </span>\r\n                        </Tooltip>,\r\n                      ]}\r\n                    </TableCell>\r\n                  </TableRow>\r\n                );\r\n              })}\r\n          </TableBody>\r\n        </Table>\r\n      </CardContent>\r\n      <CardActions>\r\n        <Button\r\n          variant=\"outlined\"\r\n          size=\"small\"\r\n          color=\"primary\"\r\n          onClick={newGroupClick}\r\n        >\r\n          Add new Group\r\n        </Button>\r\n      </CardActions>\r\n      <GroupDetailsDialog\r\n        open={groupDetailsOpen}\r\n        user={user}\r\n        group={group}\r\n        groups={props.groups}\r\n        onClose={() => {\r\n          setGroupDetailsOpen(false);\r\n          setGroup(null);\r\n        }}\r\n        onApply={() => {\r\n          setGroupDetailsOpen(false);\r\n          setGroup(null);\r\n          props.updateGroups();\r\n        }}\r\n      />\r\n    </Card>\r\n  );\r\n}\r\n\r\nGroupsContainer.propTypes = {\r\n  groups: PropTypes.array,\r\n  updateGroups: PropTypes.func,\r\n  user: PropTypes.object.isRequired,\r\n  isSuperAdmin: PropTypes.bool,\r\n  userGroupIds: PropTypes.array.isRequired,\r\n};\r\n\r\nexport default GroupsContainer;\r\n","import React, { useState, useEffect } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport {\r\n  Button,\r\n  Dialog,\r\n  DialogTitle,\r\n  DialogContent,\r\n  TextField,\r\n  IconButton,\r\n  Grid,\r\n  ListItem,\r\n  ListItemButton,\r\n  ListItemText,\r\n  ListItemIcon,\r\n  List,\r\n  Tooltip,\r\n  DialogActions,\r\n} from \"@mui/material\";\r\nimport Backend from \"../../common/utils/Backend\";\r\nimport { Folder, ArrowUpward } from \"@mui/icons-material\";\r\nimport { makeStyles } from \"@mui/styles\";\r\n\r\nconst useStyles = makeStyles(() => ({\r\n  list: {\r\n    height: 400,\r\n    border: \"2px solid rgb(218, 218, 218)\",\r\n    minHeight: \"400px\",\r\n    maxHeight: \"500px\",\r\n    width: \"100%\",\r\n    overflowY: \"auto\",\r\n  },\r\n  content: { paddingTop: 0, width: 800 },\r\n  folderIcon: { color: \"#FFE896\" },\r\n  itemText: { overflow: \"hidden\", textOverflow: \"ellipsis\" },\r\n}));\r\n\r\nconst FolderChooser = (props) => {\r\n  const { onClose, storagePath, open, isRelative, title } = props;\r\n  const classes = useStyles();\r\n  const [dirfiles, setDirFiles] = useState([]);\r\n  const [currentPath, setCurrentPath] = useState(\"\");\r\n\r\n  useEffect(() => {\r\n    if (open) {\r\n      updateFolderList(\"\");\r\n    }\r\n  }, [open]);\r\n\r\n  const updateFolderList = (currentPath) => {\r\n    // load list of available project types from backend\r\n    Backend.walkDir(currentPath, isRelative, (e) => {\r\n      let filteredDirFiles = e.filter((entry) => {\r\n        if (entry.type === \"directory\") {\r\n          let sameMrxsFile = e.find((element) => {\r\n            return element.path === entry.path + \".mrxs\";\r\n          });\r\n          return typeof sameMrxsFile === \"undefined\";\r\n        } else {\r\n          return true;\r\n        }\r\n      });\r\n      // write received info into state\r\n      setCurrentPath(currentPath);\r\n      setDirFiles(filteredDirFiles);\r\n    });\r\n  };\r\n\r\n  return (\r\n    <Dialog onClose={() => onClose()} maxWidth=\"lg\" open={open}>\r\n      <DialogTitle>{title}</DialogTitle>\r\n      <DialogContent className={classes.content}>\r\n        <Grid container>\r\n          <List dense={true} className={classes.list}>\r\n            {currentPath && (\r\n              <ListItem>\r\n                <ListItemIcon>\r\n                  <Tooltip\r\n                    disableInteractive\r\n                    title={`Up to \"${\r\n                      currentPath.substring(0, currentPath.lastIndexOf(\"/\")) ||\r\n                      \"root\"\r\n                    }\"`}\r\n                  >\r\n                    <IconButton\r\n                      onClick={() => {\r\n                        updateFolderList(\r\n                          currentPath.substring(0, currentPath.lastIndexOf(\"/\"))\r\n                        );\r\n                      }}\r\n                      size=\"large\"\r\n                    >\r\n                      <ArrowUpward />\r\n                    </IconButton>\r\n                  </Tooltip>\r\n                </ListItemIcon>\r\n                <ListItemText primary={currentPath} />\r\n              </ListItem>\r\n            )}\r\n            {dirfiles.map((e, id) => {\r\n              if (e.type === \"file\") {\r\n                return null;\r\n              }\r\n              let path =\r\n                e.path.length < 5 ? e.path : e.path.replace(/^.*[\\\\/]/, \"\");\r\n              return (\r\n                <ListItemButton\r\n                  key={id}\r\n                  onClick={() => updateFolderList(e.path)}\r\n                >\r\n                  <ListItemIcon className={classes.folderIcon}>\r\n                    <Folder />\r\n                  </ListItemIcon>\r\n                  <ListItemText primary={path} className={classes.itemText} />\r\n                </ListItemButton>\r\n              );\r\n            })}\r\n          </List>\r\n        </Grid>\r\n        <br />\r\n        <Grid container>\r\n          <TextField\r\n            fullWidth\r\n            name=\"Textfield\"\r\n            label=\"Folder\"\r\n            value={storagePath + currentPath}\r\n            InputProps={{ readOnly: true }}\r\n          />\r\n        </Grid>\r\n      </DialogContent>\r\n      <DialogActions>\r\n        <Button onClick={() => onClose()} color=\"primary\">\r\n          Cancel\r\n        </Button>\r\n        <Button onClick={() => onClose(currentPath)} color=\"primary\" autoFocus>\r\n          Accept\r\n        </Button>\r\n      </DialogActions>\r\n    </Dialog>\r\n  );\r\n};\r\n\r\nFolderChooser.propTypes = {\r\n  title: PropTypes.string.isRequired,\r\n  onClose: PropTypes.func,\r\n  open: PropTypes.bool,\r\n  storagePath: PropTypes.string.isRequired,\r\n  isRelative: PropTypes.bool.isRequired,\r\n};\r\n\r\nexport default FolderChooser;\r\n","import React, { useState, useEffect } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport Backend from \"../../common/utils/Backend\";\r\nimport {\r\n  TextField,\r\n  Typography,\r\n  CardActions,\r\n  Button,\r\n  Card,\r\n  CardContent,\r\n  Tooltip,\r\n  ListItem,\r\n  List,\r\n  ListItemText,\r\n  ListItemAvatar,\r\n  Avatar,\r\n  ListItemSecondaryAction,\r\n  IconButton,\r\n} from \"@mui/material\";\r\nimport FolderIcon from \"@mui/icons-material/Folder\";\r\nimport DeleteIcon from \"@mui/icons-material/Delete\";\r\nimport AddIcon from \"@mui/icons-material/Add\";\r\nimport FolderChooser from \"./FolderChooser\";\r\n\r\nconst ImporterContainer = ({ canEditAutoImportSettings }) => {\r\n  const [settings, setSettings] = useState(null);\r\n  const [showFolderChooser, setShowFolderChooser] = useState(false);\r\n\r\n  useEffect(() => {\r\n    Backend.readImporterSettings((data) => {\r\n      // convert string to array\r\n      if (data.importerFolders) data.folders = data.importerFolders.split(\";\");\r\n      else data.folders = [];\r\n      setSettings(data);\r\n    });\r\n  }, []);\r\n\r\n  const saveClick = () => {\r\n    const newSettings = { ...settings };\r\n    newSettings.importerFolders = newSettings.folders.join(\";\");\r\n    Backend.writeImporterSettings(newSettings, (res) => {\r\n      if (res.status === 403) {\r\n        window.showErrorSnackbar(\"No permission to edit auto import settings!\");\r\n      } else if (res.success === true) {\r\n        window.showSuccessSnackbar(\"Auto Import Settings saved!\");\r\n      } else {\r\n        window.openErrorSnackbar(\"Auto Import Settings saving failed!\");\r\n        console.log(res);\r\n      }\r\n    });\r\n  };\r\n  const addDirectoryClick = () => {\r\n    setShowFolderChooser(true);\r\n  };\r\n\r\n  const handleClose = (path) => {\r\n    if (path) {\r\n      const newSettings = { ...settings };\r\n      newSettings.folders.push(path);\r\n      setSettings(newSettings);\r\n    }\r\n    setShowFolderChooser(false);\r\n  };\r\n\r\n  const removeDirectoryClick = (path) => {\r\n    const newSettings = { ...settings };\r\n    newSettings.folders = newSettings.folders.filter((e) => e !== path);\r\n    setSettings(newSettings);\r\n  };\r\n\r\n  if (!settings) return null;\r\n  return (\r\n    <Card>\r\n      <CardContent>\r\n        <Typography variant=\"h6\">Auto Import Settings</Typography>\r\n        <List dense={true}>\r\n          {settings.folders.map((folder, folderIdx) => (\r\n            <ListItem key={folderIdx}>\r\n              <ListItemAvatar>\r\n                <Avatar>\r\n                  <FolderIcon />\r\n                </Avatar>\r\n              </ListItemAvatar>\r\n              <ListItemText\r\n                primary={folder}\r\n                secondary={settings.storagePath + folder}\r\n              />\r\n              <ListItemSecondaryAction>\r\n                <IconButton\r\n                  edge=\"end\"\r\n                  aria-label=\"delete\"\r\n                  onClick={() => removeDirectoryClick(folder)}\r\n                  size=\"large\"\r\n                >\r\n                  <DeleteIcon />\r\n                </IconButton>\r\n              </ListItemSecondaryAction>\r\n            </ListItem>\r\n          ))}\r\n        </List>\r\n        <Button\r\n          disabled={canEditAutoImportSettings !== true}\r\n          size=\"small\"\r\n          color=\"primary\"\r\n          startIcon={<AddIcon />}\r\n          onClick={addDirectoryClick}\r\n        >\r\n          Add Directory\r\n        </Button>\r\n        <FolderChooser\r\n          title=\"Choose Directory for Auto Import\"\r\n          open={showFolderChooser}\r\n          isRelative={true}\r\n          storagePath={settings.storagePath}\r\n          onClose={handleClose}\r\n        />\r\n        <br />\r\n        <br />\r\n        <Tooltip disableInteractive title=\"Start timed imports\">\r\n          <span>\r\n            <TextField\r\n              disabled={canEditAutoImportSettings !== true}\r\n              id=\"time_start\"\r\n              label=\"Start\"\r\n              type=\"time\"\r\n              defaultValue={settings.importerStart}\r\n              onChange={(e) => {\r\n                const newSettings = { ...settings };\r\n                newSettings.importerStart = e.target.value;\r\n                setSettings(newSettings);\r\n              }}\r\n              InputLabelProps={{\r\n                shrink: true,\r\n              }}\r\n              inputProps={{\r\n                step: 300, // 5 min\r\n              }}\r\n              name=\"Textfield\"\r\n            />\r\n          </span>\r\n        </Tooltip>\r\n\r\n        <span> </span>\r\n        <Tooltip disableInteractive title=\"Stop starting timed imports\">\r\n          <span>\r\n            <TextField\r\n              disabled={canEditAutoImportSettings !== true}\r\n              id=\"time_end\"\r\n              label=\"End\"\r\n              type=\"time\"\r\n              defaultValue={settings.importerEnd}\r\n              onChange={(e) => {\r\n                const newSettings = { ...settings };\r\n                newSettings.importerEnd = e.target.value;\r\n                setSettings(newSettings);\r\n              }}\r\n              InputLabelProps={{\r\n                shrink: true,\r\n              }}\r\n              inputProps={{\r\n                step: 300, // 5 min\r\n              }}\r\n              name=\"Textfield\"\r\n            />\r\n          </span>\r\n        </Tooltip>\r\n        <br />\r\n        <br />\r\n        <Tooltip disableInteractive title=\"Date and Time of last Import\">\r\n          <span>\r\n            <TextField\r\n              disabled={canEditAutoImportSettings !== true}\r\n              id=\"time_end\"\r\n              label=\"Newer than\"\r\n              type=\"datetime-local\"\r\n              defaultValue={settings.importerNewerThan}\r\n              onChange={(e) => {\r\n                const newSettings = { ...settings };\r\n                newSettings.importerNewerThan = e.target.value;\r\n                setSettings(newSettings);\r\n              }}\r\n              InputLabelProps={{\r\n                shrink: true,\r\n              }}\r\n              inputProps={{\r\n                step: 300, // 5 min\r\n              }}\r\n              name=\"Textfield\"\r\n            />\r\n          </span>\r\n        </Tooltip>\r\n      </CardContent>\r\n      <CardActions>\r\n        <Button\r\n          variant=\"outlined\"\r\n          disabled={canEditAutoImportSettings !== true}\r\n          size=\"small\"\r\n          color=\"primary\"\r\n          onClick={saveClick}\r\n        >\r\n          Save\r\n        </Button>\r\n      </CardActions>\r\n    </Card>\r\n  );\r\n};\r\n\r\nImporterContainer.propTypes = {\r\n  canEditAutoImportSettings: PropTypes.bool.isRequired,\r\n};\r\n\r\nexport default ImporterContainer;\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport classNames from \"classnames\";\r\n\r\nimport withStyles from \"@mui/styles/withStyles\";\r\nimport {\r\n  Button,\r\n  IconButton,\r\n  Dialog,\r\n  DialogTitle,\r\n  DialogContent,\r\n  ImageListItem,\r\n  ImageList,\r\n  DialogActions,\r\n} from \"@mui/material\";\r\n\r\nimport DeleteIcon from \"@mui/icons-material/Delete\";\r\nimport Backend from \"../../common/utils/Backend\";\r\n\r\nconst styles = () => ({\r\n  dialogContent: {\r\n    paddingTop: 0,\r\n    maxWidth: 900,\r\n    minWidth: 750,\r\n  },\r\n  tileBar: {\r\n    position: \"absolute\",\r\n    left: \"0\",\r\n    bottom: \"0\",\r\n    width: \"100%\",\r\n    height: \"auto\",\r\n    padding: \"14px\",\r\n    fontFamily: \"Roboto, Helvetica, Arial, sans-serif\",\r\n    fontSize: \"1em\",\r\n    color: \"white\",\r\n    background: \"rgba(0,0,0,0.5)\",\r\n  },\r\n  projectTile: {\r\n    cursor: \"pointer\",\r\n    \"&:hover\": {\r\n      background: \"#AAA\",\r\n    },\r\n  },\r\n  projectTileSelected: {\r\n    background: \"#1BA1E2!important\",\r\n  },\r\n  projectTilesList: {\r\n    maxHeight: \"500px\",\r\n    padding: 3,\r\n  },\r\n  deleteButton: {\r\n    position: \"absolute\",\r\n    bottom: 0,\r\n    right: 0,\r\n    zIndex: 10,\r\n  },\r\n  test: {\r\n    background: \"green\",\r\n  },\r\n});\r\n\r\nconst ProjectModuleTiles = (props) => {\r\n  const {\r\n    classes,\r\n    availableTypes,\r\n    projectType,\r\n    onProjectType,\r\n    onProjectTypeChange,\r\n  } = props;\r\n\r\n  return (\r\n    <DialogContent className={classes.dialogContent}>\r\n      <ImageList\r\n        rowHeight={215}\r\n        className={classes.projectTilesList}\r\n        spacing={8}\r\n        cols={3}\r\n      >\r\n        {availableTypes.map((tile) => (\r\n          <ImageListItem\r\n            key={tile.name}\r\n            onClick={() => onProjectType(tile.name)}\r\n            className={classNames(\r\n              classes.projectTile,\r\n              projectType === tile.name && classes.projectTileSelected\r\n            )}\r\n          >\r\n            {tile.isUserModule && (\r\n              <IconButton\r\n                className={classes.deleteButton}\r\n                onClick={() => {\r\n                  Backend.deleteProjectModuleType(tile.name, () => {\r\n                    window.showSuccessSnackbar(\r\n                      \"Project Type \" + tile.name + \" sucessfully deleted!\"\r\n                    );\r\n                    onProjectTypeChange();\r\n                  });\r\n                }}\r\n                size=\"large\"\r\n              >\r\n                <DeleteIcon color=\"error\" fontSize=\"medium\" />\r\n              </IconButton>\r\n            )}\r\n\r\n            <img\r\n              src={`data:image/jpeg;base64,${tile.image}`}\r\n              alt={tile.name}\r\n              className={classes.tileImage}\r\n            />\r\n            <div className={classes.tileBar}>{tile.label}</div>\r\n          </ImageListItem>\r\n        ))}\r\n      </ImageList>\r\n    </DialogContent>\r\n  );\r\n};\r\n\r\nProjectModuleTiles.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  availableTypes: PropTypes.array,\r\n  projectType: PropTypes.string,\r\n  onProjectType: PropTypes.func,\r\n  onProjectTypeChange: PropTypes.func,\r\n};\r\nclass ModuleSelectionDialog extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n\r\n    this._isMounted = false;\r\n\r\n    this.state = {\r\n      submitted: false,\r\n      projectTypes: [],\r\n      selectedProjectType: null,\r\n      projectType: \"\",\r\n    };\r\n    this.updateProjectTypes();\r\n  }\r\n\r\n  componentDidMount = () => {\r\n    this._isMounted = true;\r\n  };\r\n\r\n  componentWillUnmount = () => {\r\n    this._isMounted = false;\r\n  };\r\n\r\n  setMountedState = (stateObject, callback) => {\r\n    if (this._isMounted) {\r\n      this.setState(stateObject, callback);\r\n    }\r\n  };\r\n\r\n  updateProjectTypes = () => {\r\n    Backend.loadAvailableProjectTypes((projectTypes) => {\r\n      // order project types by order attribute\r\n      projectTypes = projectTypes.sort((a, b) => a.order - b.order);\r\n\r\n      // write received info into state\r\n      this.setMountedState({\r\n        projectTypes: projectTypes,\r\n      });\r\n    });\r\n  };\r\n\r\n  componentDidUpdate(prevProps) {\r\n    // on open dialog\r\n    if (prevProps.open !== this.props.open && this.props.open) {\r\n      this.updateProjectTypes();\r\n    }\r\n  }\r\n\r\n  onProjectType = (e) => {\r\n    if (this.props.project) {\r\n      window.openWarningDialog(\r\n        \"Project already created and the Project Type can't be changed afterwards.\\nPlease create a new Project instead.\"\r\n      );\r\n    } else {\r\n      this.setMountedState({ projectType: e });\r\n    }\r\n  };\r\n\r\n  handleClose = () => {\r\n    this.props.onClose();\r\n  };\r\n\r\n  handleOK = () => {\r\n    let selectedProjectType = this.state.projectTypes.find(\r\n      (item) => item.name === this.state.projectType\r\n    );\r\n    this.props.onSelectProject(selectedProjectType);\r\n  };\r\n\r\n  render() {\r\n    const { classes, ...other } = this.props;\r\n    const { projectType, projectTypes } = this.state;\r\n\r\n    return (\r\n      <Dialog onClose={this.handleClose} {...other} maxWidth=\"lg\">\r\n        <DialogTitle>Project Module</DialogTitle>\r\n        <ProjectModuleTiles\r\n          classes={classes}\r\n          key=\"0\"\r\n          projectType={projectType}\r\n          availableTypes={projectTypes}\r\n          onProjectType={this.onProjectType}\r\n          onProjectTypeChange={this.updateProjectTypes}\r\n        />\r\n        <DialogActions>\r\n          <Button autoFocus onClick={this.handleClose} color=\"primary\">\r\n            Cancel\r\n          </Button>\r\n          <Button onClick={this.handleOK} color=\"primary\">\r\n            Ok\r\n          </Button>\r\n        </DialogActions>\r\n      </Dialog>\r\n    );\r\n  }\r\n}\r\n\r\nModuleSelectionDialog.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  onClose: PropTypes.func,\r\n  onSelectProject: PropTypes.func,\r\n  open: PropTypes.bool,\r\n  project: PropTypes.object,\r\n};\r\n\r\nexport default withStyles(styles)(ModuleSelectionDialog);\r\n","import React from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport Backend from \"../../common/utils/Backend\";\r\nimport ModuleSelectionDialog from \"./ModuleSelectionDialog\";\r\nimport {\r\n  Grid,\r\n  Typography,\r\n  IconButton,\r\n  Card,\r\n  CardContent,\r\n  Tooltip,\r\n  Button,\r\n} from \"@mui/material\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\nimport TextField from \"@mui/material/TextField\";\r\n\r\nimport {\r\n  faImages,\r\n  faCube,\r\n  faFillDrip,\r\n  faPen,\r\n  faPencilRuler,\r\n  faDrawPolygon,\r\n  faClone,\r\n  faMousePointer,\r\n  faCamera,\r\n  faDownload,\r\n  faSquareFull,\r\n  faTable,\r\n  faThLarge,\r\n  faBrain,\r\n  faHandPointer,\r\n} from \"@fortawesome/free-solid-svg-icons\";\r\nimport { faCircle } from \"@fortawesome/free-regular-svg-icons\";\r\nimport RateReviewIcon from \"@mui/icons-material/RateReview\";\r\nimport { FontAwesomeIcon } from \"@fortawesome/react-fontawesome\";\r\nimport {\r\n  ViewQuilt,\r\n  Save,\r\n  ZoomOutMap,\r\n  CheckBoxOutlineBlank,\r\n  ZoomIn,\r\n} from \"@mui/icons-material\";\r\nimport PublishIcon from \"@mui/icons-material/Publish\";\r\nimport GetAppIcon from \"@mui/icons-material/GetApp\";\r\nimport SortIcon from \"@mui/icons-material/Sort\";\r\nimport ScatterPlotIcon from \"@mui/icons-material/ScatterPlot\";\r\n\r\nconst styles = (theme) => ({\r\n  root: {\r\n    flexGrow: 1,\r\n    width: \"100%\",\r\n    height: \"calc(100vh - 64px - 48px)\",\r\n    overflow: \"hidden\",\r\n  },\r\n  paper: {\r\n    padding: 20,\r\n    display: \"flex\",\r\n    justifyContent: \"center\",\r\n    alignItems: \"center\",\r\n  },\r\n  activeColor: {\r\n    color: theme.palette.primary.main,\r\n  },\r\n  textIcon: {\r\n    fontSize: 18,\r\n    fontWeight: \"bold\",\r\n  },\r\n  tileContainer: {\r\n    position: \"relative\",\r\n    width: 270,\r\n    height: 180,\r\n    overflow: \"hidden\",\r\n  },\r\n  textInputField: {\r\n    width: \"calc(100% - 320px)\",\r\n  },\r\n  previewDiv: {\r\n    cursor: \"pointer\",\r\n    background: \"gray\",\r\n    color: \"white\",\r\n    top: \"50%\",\r\n    width: \"100%\",\r\n    position: \"relative\",\r\n    height: 180,\r\n    textAlign: \"center\",\r\n    fontSize: 40,\r\n    lineHeight: \"150px\",\r\n  },\r\n  tileImage: {\r\n    width: \"100%\",\r\n    position: \"relative\",\r\n    cursor: \"pointer\",\r\n  },\r\n  previewIcon: {\r\n    marginTop: \"-8px\",\r\n  },\r\n  tileBar: {\r\n    position: \"absolute\",\r\n    left: \"0\",\r\n    bottom: \"0\",\r\n    width: \"100%\",\r\n    height: \"auto\",\r\n    padding: \"14px\",\r\n    fontFamily: \"Roboto, Helvetica, Arial, sans-serif\",\r\n    fontSize: \"1em\",\r\n    color: \"white\",\r\n    background: \"rgba(0,0,0,0.5)\",\r\n  },\r\n  middleStructuresColumn: {\r\n    float: \"left\",\r\n    marginRight: 10,\r\n  },\r\n});\r\n\r\nclass ModuleCreationContainer extends React.Component {\r\n  constructor(props) {\r\n    super(props);\r\n\r\n    this._isMounted = false;\r\n    this.state = {\r\n      isDevState: false,\r\n      previewFile: null,\r\n      previewImgUrl: \"\",\r\n      dialogOpen: false,\r\n      selectedProject: null,\r\n      name: \"\",\r\n      moduleIdError: false,\r\n      moduleLabelError: false,\r\n      previewError: false,\r\n      noStructuresError: false,\r\n      project: {\r\n        isUserModule: true,\r\n        label: \"\",\r\n        description: \"\",\r\n        annotations: \"pixel\",\r\n        order: 0,\r\n        metaData: [\r\n          \"Datum\",\r\n          \"Versuchsnummer\",\r\n          \"AK Verdünnung\",\r\n          \"Mitarbeiter\",\r\n          \"Färbung\",\r\n          \"AK\",\r\n        ],\r\n        ProjectProperties: {\r\n          AutomaticBaseRoiWholeImage: false,\r\n          Hidden: false,\r\n          HideSubMenus: false,\r\n          Online: false,\r\n          PreventOverlap: true,\r\n          PreventOverlapSame: true,\r\n        },\r\n        ProjectStringProperties: {\r\n          SideBarWidth: \"\",\r\n        },\r\n        toolsInProject: {\r\n          GalleryTool: true,\r\n          TilesTool: false,\r\n          AdjustLayoutTool: true,\r\n          FilterAnnotationsTool: true,\r\n          PlotNearestTool: false,\r\n          DrawRectangleAnnotationTool: true,\r\n          DrawEllipseAnnotationTool: true,\r\n          DrawPixelAnnotationTool: true,\r\n          DrawRegionAnnotationTool: true,\r\n          SelectRegionAnnotationTool: true,\r\n          CopyRegionAnnotationTool: true,\r\n          FillHoleAnnotationTool: true,\r\n          OtherTools: true,\r\n          CommentTool: true,\r\n          ScreenshotTool: true,\r\n          ZoomOriginalTool: true,\r\n          ZoomInOutTool: true,\r\n          ZoomFitTool: true,\r\n          SaveTool: true,\r\n          LandmarkTool: true,\r\n          RoiResizeTool: true,\r\n          HeatmapTool: true,\r\n          SaveImagesTool: false,\r\n          PassiveLearningTool: false,\r\n          ApplyModelTool: false,\r\n          RoiTab: true,\r\n          AICockpit: true,\r\n          ResultTab: false,\r\n          AITrainingTool: false,\r\n          ShowALTabTool: false,\r\n          GridTool: false,\r\n          GridAnnotationTool: true,\r\n          GalleryTrainingTool: false,\r\n        },\r\n        structures: [\r\n          {\r\n            id: 1,\r\n            label: \"Base ROI\",\r\n            color: \"rgba(0, 0, 0, 0.0)\",\r\n            inversed: \"true\",\r\n            toolNames: [\"iam_base_roi\"],\r\n          },\r\n        ],\r\n        dynamicStructure: {\r\n          label: \"Structure {}\",\r\n          toolNames: [],\r\n        },\r\n        models: [],\r\n        job: \"job_simple_analysis\",\r\n      },\r\n    };\r\n\r\n    Backend.loadReducedAvailableProjectTypes((projectTypes) => {\r\n      if (\r\n        projectTypes.some((projectType) => projectType.name === \"testProject\")\r\n      ) {\r\n        this.setMountedState({ isDevState: true });\r\n      }\r\n    });\r\n  }\r\n\r\n  componentDidMount() {\r\n    this._isMounted = true;\r\n  }\r\n\r\n  componentWillUnmount() {\r\n    this._isMounted = false;\r\n  }\r\n\r\n  setMountedState = (stateObject, callback) => {\r\n    if (this._isMounted) {\r\n      this.setState(stateObject, callback);\r\n    }\r\n  };\r\n\r\n  setProject = (obj) => {\r\n    let projectObject = this.state.project;\r\n    const structureKeys = [\r\n      \"id\",\r\n      \"label\",\r\n      \"color\",\r\n      \"toolNames\",\r\n      \"inversed\",\r\n      \"parentId\",\r\n      \"classificationSubtype\",\r\n    ];\r\n\r\n    Object.keys(projectObject).forEach((key) => {\r\n      if (key in obj) {\r\n        if (key === \"structures\") {\r\n          projectObject[\"structures\"] = [];\r\n          for (let structure of obj[\"structures\"]) {\r\n            let structureObj = {};\r\n            for (let k of structureKeys) {\r\n              if (k in structure) {\r\n                structureObj[k] = structure[k];\r\n              }\r\n            }\r\n            projectObject[\"structures\"].push(structureObj);\r\n          }\r\n        } else {\r\n          projectObject[key] = obj[key];\r\n        }\r\n      }\r\n    });\r\n    this.setMountedState({ project: projectObject });\r\n  };\r\n\r\n  handleStructureSelect = ({ target }) => {\r\n    let uploadedFile = target.files[0];\r\n    if (typeof uploadedFile === \"undefined\") return false;\r\n\r\n    if (\r\n      !(uploadedFile.type === \"\" && uploadedFile.name.endsWith(\".strhsa\")) &&\r\n      uploadedFile.type !== \"application/json\"\r\n    ) {\r\n      window.showErrorSnackbar(\"Wrong file type == \" + uploadedFile.type);\r\n      return false;\r\n    }\r\n\r\n    if (uploadedFile) {\r\n      let readFile = new FileReader();\r\n      readFile.onload = (e) => {\r\n        let contents = e.target.result;\r\n        let structures = JSON.parse(contents);\r\n        let resultStructures = [];\r\n        for (let structure of structures) {\r\n          let tempStructure = {\r\n            id: structure.id,\r\n            label: structure.label,\r\n            color: structure.color,\r\n            toolNames: structure.toolNames ? structure.toolNames : [],\r\n          };\r\n          if (structure.inversed) {\r\n            tempStructure.inversed = structure.inversed;\r\n          }\r\n          if (structure.parentId) {\r\n            tempStructure.parentId = structure.parentId;\r\n          }\r\n          if (structure.classificationSubtype) {\r\n            tempStructure.classificationSubtype =\r\n              structure.classificationSubtype;\r\n          }\r\n          resultStructures.push(tempStructure);\r\n        }\r\n        this.setProject({\r\n          structures: resultStructures,\r\n        });\r\n        this.setMountedState({\r\n          noStructuresError: false,\r\n        });\r\n      };\r\n      readFile.readAsText(uploadedFile);\r\n    } else {\r\n      console.log(\"Failed to load file\");\r\n    }\r\n  };\r\n\r\n  handlePreviewSelect = ({ target }) => {\r\n    if (target.files.length > 0) {\r\n      this.setMountedState({\r\n        previewError: false,\r\n        previewFile: target.files[0],\r\n        previewImgUrl: window.URL.createObjectURL(target.files[0]),\r\n      });\r\n    }\r\n  };\r\n\r\n  renderIcon(param) {\r\n    switch (param) {\r\n      case \"GalleryTool\":\r\n        return <FontAwesomeIcon icon={faImages} />;\r\n      case \"3DVisualisation\":\r\n        return <FontAwesomeIcon icon={faCube} />;\r\n      case \"TilesTool\":\r\n        return <FontAwesomeIcon icon={faSquareFull} />;\r\n      case \"FilterAnnotationsTool\":\r\n        return <SortIcon />;\r\n      case \"PlotNearestTool\":\r\n        return <ScatterPlotIcon />;\r\n      case \"AdjustLayoutTool\":\r\n        return <ViewQuilt />;\r\n      case \"DrawRectangleAnnotationTool\":\r\n        return <CheckBoxOutlineBlank />;\r\n      case \"DrawPixelAnnotationTool\":\r\n        return <FontAwesomeIcon icon={faPen} />;\r\n      case \"DrawMagicWandAnnotationTool\":\r\n        return <FontAwesomeIcon icon={faPen} />;\r\n      case \"DrawRegionAnnotationTool\":\r\n        return <FontAwesomeIcon icon={faDrawPolygon} />;\r\n      case \"DrawEllipseAnnotationTool\":\r\n        return <FontAwesomeIcon icon={faCircle} mask={[\"far\"]} />;\r\n      case \"FillHoleAnnotationTool\":\r\n        return <FontAwesomeIcon icon={faFillDrip} />;\r\n      case \"SelectRegionAnnotationTool\":\r\n        return <FontAwesomeIcon icon={faMousePointer} />;\r\n      case \"TilesClassificationTool\":\r\n        return <FontAwesomeIcon icon={faHandPointer} />;\r\n      case \"CopyRegionAnnotationTool\":\r\n        return <FontAwesomeIcon icon={faClone} />;\r\n      case \"AITrainingTool\":\r\n        return <FontAwesomeIcon icon={faBrain} />;\r\n      case \"GridTool\":\r\n        return <FontAwesomeIcon icon={faThLarge} />;\r\n      case \"OtherTools\":\r\n        return <FontAwesomeIcon icon={faThLarge} />;\r\n      case \"SaveImagesTool\":\r\n        return <FontAwesomeIcon icon={faDownload} />;\r\n      case \"CommentTool\":\r\n        return <RateReviewIcon />;\r\n      case \"ScreenshotTool\":\r\n        return <FontAwesomeIcon icon={faCamera} />;\r\n      case \"ZoomOriginalTool\":\r\n        return <div className={this.props.classes.textIcon}>1:X</div>;\r\n      case \"ZoomFitTool\":\r\n        return <ZoomOutMap />;\r\n      case \"ZoomInOutTool\":\r\n        return <ZoomIn />;\r\n      case \"SaveTool\":\r\n        return <Save />;\r\n      case \"PassiveLearningTool\":\r\n      case \"RoiTab\":\r\n        return <FontAwesomeIcon icon={faPencilRuler} />;\r\n      case \"AICockpit\":\r\n      case \"ShowALTabTool\":\r\n      case \"ApplyModelTool\":\r\n        return <FontAwesomeIcon icon={faBrain} />;\r\n      default:\r\n        return <FontAwesomeIcon icon={faTable} />;\r\n    }\r\n  }\r\n\r\n  onCreateProjectType = () => {\r\n    let missingInput = false;\r\n    if (this.state.name === \"\") {\r\n      window.showErrorSnackbar(\"Please set a Module ID\");\r\n      this.setMountedState({\r\n        moduleIdError: true,\r\n      });\r\n      missingInput = true;\r\n    }\r\n    if (this.state.project.label === \"\") {\r\n      this.setMountedState({\r\n        moduleLabelError: true,\r\n      });\r\n      window.showErrorSnackbar(\"Please set a Module Name\");\r\n    }\r\n    if (this.state.previewImgUrl === \"\") {\r\n      this.setMountedState({\r\n        previewError: true,\r\n      });\r\n      window.showErrorSnackbar(\"Please select a Preview Image\");\r\n      missingInput = true;\r\n    }\r\n    if (this.state.previewImgUrl.includes(\"data:image\")) {\r\n      this.setMountedState({\r\n        previewError: true,\r\n      });\r\n      window.showErrorSnackbar(\"Please select your own Preview Image\");\r\n      missingInput = true;\r\n    }\r\n    if (this.state.project.structures.length === 0) {\r\n      this.setMountedState({\r\n        noStructuresError: true,\r\n      });\r\n      window.showErrorSnackbar(\"Please select a valid structures file\");\r\n      missingInput = true;\r\n    }\r\n    if (missingInput) return;\r\n    Backend.loadReducedAvailableProjectTypes((projectTypes) => {\r\n      if (projectTypes.find((item) => item.name === this.state.name)) {\r\n        window.showErrorSnackbar(\r\n          \"Project Module with ID \" + this.state.name + \" already exists!\"\r\n        );\r\n        this.setMountedState({ moduleIdError: true });\r\n        return;\r\n      }\r\n\r\n      let projectObject = this.state.project;\r\n      projectObject.isUserModule = true;\r\n\r\n      // create json file\r\n      Backend.createProjectModuleTypeJsonFile(\r\n        this.state.name,\r\n        projectObject,\r\n        (response) => {\r\n          if (response.success) {\r\n            // if json file was created, create image with same name as well\r\n            Backend.createProjectModuleTypeImage(\r\n              this.state.name,\r\n              this.state.previewFile,\r\n              (response) => {\r\n                if (response.success) {\r\n                  window.showSuccessSnackbar(\r\n                    \"Project Module \" +\r\n                      this.state.project.label +\r\n                      \" succesfully created\"\r\n                  );\r\n                }\r\n              }\r\n            );\r\n          }\r\n        }\r\n      );\r\n    });\r\n  };\r\n  renderPreviewImage = () => {\r\n    let imagePreview;\r\n    if (this.state.previewImgUrl === \"\") {\r\n      imagePreview = (\r\n        <div\r\n          onClick={() => document.getElementById(\"selectImage\").click()}\r\n          className={this.props.classes.previewDiv}\r\n        >\r\n          <PublishIcon\r\n            className={this.props.classes.previewIcon}\r\n            fontSize=\"large\"\r\n          />{\" \"}\r\n          <span>Preview</span>\r\n          <input\r\n            style={{ display: \"none\" }}\r\n            type=\"file\"\r\n            accept=\"image/png, image/jpeg\"\r\n            id=\"selectImage\"\r\n            onChange={this.handlePreviewSelect}\r\n          />\r\n        </div>\r\n      );\r\n    } else {\r\n      imagePreview = (\r\n        <img\r\n          onClick={() => document.getElementById(\"selectImage\").click()}\r\n          src={this.state.previewImgUrl}\r\n          className={this.props.classes.tileImage}\r\n          alt=\"\"\r\n        />\r\n      );\r\n    }\r\n    return (\r\n      <div\r\n        style={{ border: this.state.previewError ? \"3px solid red\" : \"none\" }}\r\n      >\r\n        {imagePreview}\r\n        <input\r\n          style={{ display: \"none\" }}\r\n          type=\"file\"\r\n          accept=\"image/png, image/jpeg\"\r\n          id=\"selectImage\"\r\n          onChange={this.handlePreviewSelect}\r\n        />\r\n      </div>\r\n    );\r\n  };\r\n\r\n  onSelectProject = (projectType) => {\r\n    console.log(\"projectType:\", projectType);\r\n    this.setMountedState({\r\n      name: projectType.name,\r\n      dialogOpen: false,\r\n    });\r\n    this.setProject(projectType);\r\n  };\r\n\r\n  exportSelectedProjectType = () => {\r\n    Backend.loadReducedAvailableProjectTypes((projectTypes) => {\r\n      if (projectTypes.find((item) => item.name === this.state.name)) {\r\n        Backend.exportProjectTypes(\r\n          [this.state.name],\r\n          this.state.name,\r\n          (response) => {\r\n            window.showSuccessSnackbar(\"Project Module exported!\");\r\n            console.log(\"response:\", response);\r\n          }\r\n        );\r\n      } else {\r\n        window.showErrorSnackbar(\"module does not exist!\");\r\n      }\r\n    });\r\n  };\r\n\r\n  exportNewProjectTypes = () => {\r\n    Backend.loadAvailableProjectTypes((projectTypes) => {\r\n      let ownProjectTypes = projectTypes\r\n        .filter((item) => item.isUserModule)\r\n        .map((item) => item.name);\r\n      if (ownProjectTypes.length > 0) {\r\n        Backend.exportProjectTypes(\r\n          ownProjectTypes,\r\n          \"project_modules\",\r\n          (response) => {\r\n            window.showSuccessSnackbar(\"Project Modules exported!\");\r\n            console.log(\"response:\", response);\r\n          }\r\n        );\r\n      } else {\r\n        window.showErrorSnackbar(\"No Project Modules created to export!\");\r\n      }\r\n    });\r\n  };\r\n\r\n  render() {\r\n    const { classes } = this.props;\r\n    const { isDevState } = this.state;\r\n    return (\r\n      <Card style={{ display: isDevState ? \"block\" : \"none\" }}>\r\n        <CardContent>\r\n          <Grid container>\r\n            <Grid item xs={12}>\r\n              <Typography variant=\"h6\">Create Project Module</Typography>\r\n            </Grid>\r\n            <Grid item xs={3}>\r\n              {Object.keys(this.state.project.toolsInProject).map(\r\n                (key, idx) => (\r\n                  <Tooltip disableInteractive key={idx} title={key}>\r\n                    <IconButton\r\n                      style={{ width: 38 }}\r\n                      className={\r\n                        this.state.project.toolsInProject[key]\r\n                          ? classes.activeColor\r\n                          : \"\"\r\n                      }\r\n                      onClick={() => {\r\n                        let toolsInProjectObject =\r\n                          this.state.project.toolsInProject;\r\n                        toolsInProjectObject[key] = !toolsInProjectObject[key];\r\n                        this.setProject({\r\n                          toolsInProject: toolsInProjectObject,\r\n                        });\r\n                      }}\r\n                      size=\"large\"\r\n                    >\r\n                      {this.renderIcon(key)}\r\n                    </IconButton>\r\n                  </Tooltip>\r\n                )\r\n              )}\r\n            </Grid>\r\n\r\n            <Grid item xs={9}>\r\n              <div className={classes.middleStructuresColumn}>\r\n                <div className={classes.tileContainer}>\r\n                  {this.renderPreviewImage()}\r\n\r\n                  <div className={classes.tileBar}>\r\n                    {this.state.project.label}\r\n                  </div>\r\n                </div>\r\n                <div>\r\n                  <Button\r\n                    style={{\r\n                      border: this.state.noStructuresError\r\n                        ? \"3px solid red\"\r\n                        : \"none\",\r\n                    }}\r\n                    onClick={() =>\r\n                      document.getElementById(\"selectStructures\").click()\r\n                    }\r\n                  >\r\n                    <PublishIcon />\r\n                    {this.state.project.structures.length} Structures\r\n                  </Button>{\" \"}\r\n                  <input\r\n                    style={{ display: \"none\" }}\r\n                    type=\"file\"\r\n                    accept=\".strhsa\"\r\n                    id=\"selectStructures\"\r\n                    onChange={this.handleStructureSelect}\r\n                  />\r\n                </div>\r\n\r\n                <Button\r\n                  size=\"small\"\r\n                  color=\"primary\"\r\n                  onClick={() => this.exportSelectedProjectType()}\r\n                >\r\n                  <GetAppIcon /> Export selected Project Module\r\n                </Button>\r\n                <br />\r\n                <Button\r\n                  size=\"small\"\r\n                  color=\"primary\"\r\n                  onClick={() => this.exportNewProjectTypes()}\r\n                >\r\n                  <GetAppIcon /> Export all new Project Modules\r\n                </Button>\r\n                <br />\r\n                <Button\r\n                  size=\"small\"\r\n                  color=\"primary\"\r\n                  onClick={() => {\r\n                    document.getElementById(\"selectImportFile\").click();\r\n                  }}\r\n                >\r\n                  <PublishIcon /> Import Project Modules\r\n                </Button>\r\n\r\n                <input\r\n                  type=\"file\"\r\n                  id=\"selectImportFile\"\r\n                  style={{ display: \"none\" }}\r\n                  accept=\"application/zip\"\r\n                  onChange={(e) => {\r\n                    console.log(\"file:\", e.target.files);\r\n                    if (e.target.files.length > 0) {\r\n                      Backend.importProjectTypes(\r\n                        e.target.files[0],\r\n                        (response) => {\r\n                          console.log(\"response:\", response);\r\n                        }\r\n                      );\r\n                    }\r\n                  }}\r\n                />\r\n              </div>\r\n              <div>\r\n                <Button\r\n                  size=\"small\"\r\n                  color=\"primary\"\r\n                  onClick={() => this.setMountedState({ dialogOpen: true })}\r\n                >\r\n                  Open existing Project Modules\r\n                </Button>\r\n                <ModuleSelectionDialog\r\n                  open={this.state.dialogOpen}\r\n                  onClose={() => this.setMountedState({ dialogOpen: false })}\r\n                  onSelectProject={this.onSelectProject}\r\n                />\r\n                <br />\r\n                <TextField\r\n                  className={classes.textInputField}\r\n                  name=\"Textfield\"\r\n                  error={this.state.moduleIdError}\r\n                  helperText={this.state.moduleIdError ? \"Set a module ID\" : \"\"}\r\n                  id=\"module_name\"\r\n                  label=\"Module ID\"\r\n                  type=\"text\"\r\n                  value={this.state.name}\r\n                  variant=\"outlined\"\r\n                  size=\"small\"\r\n                  margin=\"normal\"\r\n                  onChange={(e) =>\r\n                    this.setMountedState({\r\n                      name: e.target.value,\r\n                      moduleIdError: false,\r\n                    })\r\n                  }\r\n                />\r\n                <TextField\r\n                  className={classes.textInputField}\r\n                  name=\"Textfield\"\r\n                  error={this.state.moduleLabelError}\r\n                  helperText={\r\n                    this.state.moduleLabelError ? \"Set a module name\" : \"\"\r\n                  }\r\n                  id=\"module_label\"\r\n                  label=\"Module Name\"\r\n                  type=\"text\"\r\n                  value={this.state.project.label}\r\n                  variant=\"outlined\"\r\n                  size=\"small\"\r\n                  margin=\"normal\"\r\n                  onChange={(e) =>\r\n                    this.setProject({\r\n                      label: e.target.value,\r\n                      moduleLabelError: false,\r\n                    })\r\n                  }\r\n                />\r\n                <TextField\r\n                  className={classes.textInputField}\r\n                  name=\"Textfield\"\r\n                  id=\"module_description\"\r\n                  label=\"Module Description\"\r\n                  type=\"text\"\r\n                  value={this.state.project.description}\r\n                  variant=\"outlined\"\r\n                  size=\"small\"\r\n                  margin=\"normal\"\r\n                  onChange={(e) =>\r\n                    this.setProject({ description: e.target.value })\r\n                  }\r\n                />\r\n              </div>\r\n            </Grid>\r\n          </Grid>\r\n          <Button\r\n            variant=\"outlined\"\r\n            size=\"small\"\r\n            color=\"primary\"\r\n            onClick={this.onCreateProjectType}\r\n          >\r\n            create new Project Type\r\n          </Button>\r\n        </CardContent>\r\n      </Card>\r\n    );\r\n  }\r\n}\r\n\r\nModuleCreationContainer.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n};\r\n\r\nexport default withStyles(styles)(ModuleCreationContainer);\r\n","import React from \"react\";\r\nimport IconButton from \"@mui/material/IconButton\";\r\nimport VisibilityIcon from \"@mui/icons-material/Visibility\";\r\nimport VisibilityOffIcon from \"@mui/icons-material/VisibilityOff\";\r\n\r\nimport { styled } from \"@mui/material/styles\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nconst StyledIconButton = styled(IconButton)(({ theme, checked }) => ({\r\n  color: \"#757575\",\r\n  padding: 12,\r\n  \"& svg\": {\r\n    fontSize: \"1.5rem\",\r\n    ...(checked && {\r\n      color: theme.palette.primary.main,\r\n    }),\r\n  },\r\n}));\r\nconst EyeIconButton = (props) => {\r\n  const { checked, onClick, ...rest } = props;\r\n\r\n  return (\r\n    <StyledIconButton {...rest} checked={checked} onClick={onClick}>\r\n      {checked ? <VisibilityIcon /> : <VisibilityOffIcon />}\r\n    </StyledIconButton>\r\n  );\r\n};\r\n\r\nEyeIconButton.propTypes = {\r\n  checked: PropTypes.bool,\r\n  onClick: PropTypes.func.isRequired,\r\n};\r\n\r\nexport default EyeIconButton;\r\n","import { isInt } from \"./Utils\";\r\n\r\n/**\r\n * Predetermined colors to be used.\r\n */\r\nexport const presetColors = [\r\n  \"#e6194b\",\r\n  \"#3cb44b\",\r\n  \"#ffe119\",\r\n  \"#4363d8\",\r\n  \"#f58231\",\r\n  \"#911eb4\",\r\n  \"#46f0f0\",\r\n  \"#f032e6\",\r\n  \"#bcf60c\",\r\n  \"#fabebe\",\r\n  \"#008080\",\r\n  \"#e6beff\",\r\n  \"#9a6324\",\r\n  \"#fffac8\",\r\n  \"#800000\",\r\n  \"#aaffc3\",\r\n  \"#808000\",\r\n  \"#ffd8b1\",\r\n  \"#000075\",\r\n  \"#808080\",\r\n  \"#000000\",\r\n];\r\n\r\n/**\r\n * Get a random color, the first 21 colors are predetermined.\r\n * @param {int} colorIdx Optional. Used when querying a color and wanting to use the predetermined colors. Defaults to -1.\r\n * @returns {string} A string representing a color #01234EF.\r\n */\r\nexport function getRandomColor(colorIdx = null) {\r\n  if (colorIdx !== null && (!isInt(colorIdx) || colorIdx < 0))\r\n    throw TypeError(\r\n      `colorIdx must be of type integer >= 0, received ${typeof colorIdx}: ${colorIdx}`\r\n    );\r\n\r\n  var letters = \"0123456789ABCDEF\";\r\n  var color = \"#\";\r\n  if (colorIdx >= 0 && colorIdx < presetColors.length) {\r\n    color = presetColors[colorIdx];\r\n    colorIdx++;\r\n  } else {\r\n    for (var i = 0; i < 6; i++) {\r\n      color += letters[Math.floor(Math.random() * 16)];\r\n    }\r\n  }\r\n  return color;\r\n}\r\n\r\n/**\r\n * Get a color currently not used in structures.\r\n * @param {array} structures Existing structures.\r\n * @returns {string} A string representing a color #01234EF.\r\n */\r\nexport function getUnusedColor(structures) {\r\n  if (!Array.isArray(structures))\r\n    throw TypeError(\r\n      `structures must be of type Array, received ${typeof structures}: ${structures}`\r\n    );\r\n\r\n  let counter = 0;\r\n  let color = getRandomColor(counter);\r\n  while (structures.some((s) => s.color === color) && counter < 50) {\r\n    counter++;\r\n    color = getRandomColor(counter);\r\n  }\r\n  return color;\r\n}\r\n","import React, { useState } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport { HexAlphaColorPicker } from \"react-colorful\";\r\nimport { makeStyles } from \"@mui/styles\";\r\nimport \"../../css/colorpicker.css\";\r\nimport { presetColors } from \"../utils/RandomColorGenerator\";\r\n\r\nconst useStyles = makeStyles({\r\n  popover: {\r\n    position: \"relative\",\r\n  },\r\n  pickerContainer: {\r\n    position: \"fixed\",\r\n    zIndex: \"2\",\r\n    marginRight: \"10px\",\r\n    padding: \"16px\",\r\n    borderRadius: \"5px\",\r\n    background: \"#33333a\",\r\n    boxShadow: \"0 6px 12px #999\",\r\n  },\r\n  color: {\r\n    width: \"36px\",\r\n    height: \"14px\",\r\n    borderRadius: \"2px\",\r\n  },\r\n  mainSwatch: {\r\n    padding: \"5px\",\r\n    background: \"#fff\",\r\n    borderRadius: \"1px\",\r\n    boxShadow: \"0 0 0 1px rgba(0,0,0,.1)\",\r\n    display: \"inline-block\",\r\n    cursor: \"pointer\",\r\n    marginTop: 6,\r\n  },\r\n  cover: {\r\n    position: \"fixed\",\r\n    top: \"0px\",\r\n    right: \"0px\",\r\n    bottom: \"0px\",\r\n    left: \"0px\",\r\n    zIndex: \"1\",\r\n  },\r\n  pickerSwatches: {\r\n    display: \"flex\",\r\n    flexWrap: \"wrap\",\r\n    paddingTop: \"12px\",\r\n    justifyContent: \"center\",\r\n  },\r\n  pickerSwatch: {\r\n    width: \"20px\",\r\n    aspectRatio: \"1\",\r\n    margin: \"4px\",\r\n    border: \"none\",\r\n    padding: 0,\r\n    borderRadius: \"4px\",\r\n    cursor: \"pointer\",\r\n    outline: \"none\",\r\n  },\r\n});\r\n\r\n/**\r\n * Color picker that uses the SketchPicker from react-colorful.\r\n * @param {string} color The color to display as a hex string.\r\n * @param {function} handleChange Callback function that receives the new color as a hex string.\r\n * @param {function} onClose Callback function that is called when the color picker is closed.\r\n * @param {bool} includeWhite Flag if the color white should be included in the color swatches.\r\n * @returns\r\n */\r\nconst SketchColorPicker = (props) => {\r\n  const { color, handleChange, onClose, includeWhite } = props;\r\n  const [displayColorPicker, setDisplayColorPicker] = useState(false);\r\n  const [xPosition, setXPosition] = useState(0);\r\n  const [yPosition, setYPosition] = useState(0);\r\n\r\n  let colorsForSwatches = presetColors;\r\n  if (includeWhite) {\r\n    colorsForSwatches = [\"#ffffff\", ...presetColors];\r\n  }\r\n\r\n  const handleClick = (e) => {\r\n    let x = e.clientX;\r\n    let y = e.clientY;\r\n    if (window.innerHeight - e.clientY < 330) {\r\n      y -= 250;\r\n    }\r\n    if (window.innerWidth - e.clientX < 330) {\r\n      x -= 150;\r\n    }\r\n    setXPosition(x);\r\n    setYPosition(y);\r\n    setDisplayColorPicker(true);\r\n    e.stopPropagation();\r\n  };\r\n\r\n  const handleClose = (e) => {\r\n    setDisplayColorPicker(false);\r\n    e.stopPropagation();\r\n    onClose();\r\n  };\r\n\r\n  const classes = useStyles();\r\n\r\n  return (\r\n    <div className={classes.popover}>\r\n      <div className={classes.mainSwatch} onClick={handleClick}>\r\n        <div className={classes.color} style={{ background: color }} />\r\n      </div>\r\n      {displayColorPicker && [\r\n        <div key={\"close\"} className={classes.cover} onClick={handleClose} />,\r\n        <div\r\n          key={\"picker\"}\r\n          className={classes.pickerContainer}\r\n          style={{ top: yPosition + 10, left: xPosition }}\r\n        >\r\n          <HexAlphaColorPicker\r\n            className=\"color-picker\"\r\n            color={color}\r\n            onChange={handleChange}\r\n          />\r\n          <div className={classes.pickerSwatches}>\r\n            {colorsForSwatches.map((presetColor) => (\r\n              <button\r\n                key={presetColor}\r\n                className={classes.pickerSwatch}\r\n                style={{ background: presetColor }}\r\n                onClick={(e) => {\r\n                  handleChange(presetColor);\r\n                  e.stopPropagation();\r\n                }}\r\n              />\r\n            ))}\r\n          </div>\r\n        </div>,\r\n      ]}\r\n    </div>\r\n  );\r\n};\r\n\r\nSketchColorPicker.propTypes = {\r\n  color: PropTypes.string.isRequired,\r\n  handleChange: PropTypes.func,\r\n  onClose: PropTypes.func,\r\n  includeWhite: PropTypes.bool,\r\n};\r\n\r\nSketchColorPicker.defaultProps = {\r\n  handleChange: () => {},\r\n  onClose: () => {},\r\n  includeWhite: false,\r\n};\r\n\r\nexport default SketchColorPicker;\r\n","import React, {\r\n  useState,\r\n  useRef,\r\n  useImperativeHandle,\r\n  forwardRef,\r\n} from \"react\";\r\nimport MuiTextField from \"@mui/material/TextField\";\r\nimport MenuItem from \"@mui/material/MenuItem\";\r\nimport Tooltip from \"@mui/material/Tooltip\";\r\nimport IconButton from \"@mui/material/IconButton\";\r\nimport DeleteIcon from \"@mui/icons-material/Delete\";\r\nimport AddIcon from \"@mui/icons-material/Add\";\r\nimport { makeStyles } from \"@mui/styles\";\r\nimport SketchColorPicker from \"./../../common/components/SketchColorPicker\";\r\n\r\nconst useStyles = makeStyles({\r\n  root: {\r\n    marginBottom: 20,\r\n  },\r\n  selectFieldDatatype: {\r\n    width: 300,\r\n    marginRight: 5,\r\n  },\r\n  selectFieldDefault: {\r\n    lineHeight: \"40px\",\r\n    \"& .MuiIconButton-root\": {\r\n      display: \"none\",\r\n    },\r\n    \"& .MuiSelect-select\": {\r\n      height: \"22px\",\r\n      \"& >div\": {\r\n        display: \"none\",\r\n      },\r\n    },\r\n  },\r\n  defaultSelectInput: {\r\n    lineHeight: \"40px\",\r\n    \"& .MuiSelect-select\": {\r\n      height: \"22px\",\r\n    },\r\n  },\r\n  fab: {\r\n    marginLeft: \"auto !important\",\r\n  },\r\n\r\n  newItem: {\r\n    \"& >form\": {\r\n      width: \"100%\",\r\n      display: \"grid\",\r\n      gridTemplateColumns: \"1fr auto\",\r\n    },\r\n  },\r\n});\r\n\r\n/* eslint-disable react/prop-types */\r\nconst CaseSettingsEditableOptionsMenu = (\r\n  { data: { defaultValue, items }, idx },\r\n  forwardedRef\r\n) => {\r\n  const [newSelectionItemValue, setNewSelectionItemValue] = useState(\"\");\r\n  const [selectedValue, setSelectedValue] = useState(defaultValue);\r\n  const [selectionItems, setSelectionItems] = useState(items);\r\n  const newItemInputRef = useRef(null);\r\n\r\n  const classes = useStyles();\r\n\r\n  const getOptionsData = () => {\r\n    return {\r\n      defaultValue: selectedValue,\r\n      items: selectionItems,\r\n    };\r\n  };\r\n\r\n  useImperativeHandle(forwardedRef, () => ({\r\n    getOptionsData,\r\n  }));\r\n\r\n  const handleOnChangeDefault = (e) => {\r\n    setSelectedValue(e.target.value);\r\n  };\r\n\r\n  const handleOnUpdateSelectionItem = (e) => {\r\n    setNewSelectionItemValue(e.target.value);\r\n  };\r\n\r\n  const handleOnAddSelectionItem = (e) => {\r\n    e.preventDefault();\r\n    if (\r\n      !newSelectionItemValue ||\r\n      selectionItems.map((item) => item.label).includes(newSelectionItemValue)\r\n    ) {\r\n      setTimeout(() => {\r\n        newItemInputRef.current.focus();\r\n      }, 0);\r\n      return;\r\n    }\r\n    const newSelectionItems = [\r\n      ...selectionItems,\r\n      { label: newSelectionItemValue, color: \"#ffffff\" },\r\n    ];\r\n    setSelectedValue(newSelectionItemValue);\r\n    setNewSelectionItemValue(\"\");\r\n    setSelectionItems(newSelectionItems);\r\n    setTimeout(() => {\r\n      newItemInputRef.current.focus();\r\n    }, 0);\r\n  };\r\n\r\n  const handleOnDeleteSelectionItem = (e, itemIdx) => {\r\n    e.preventDefault();\r\n    e.stopPropagation();\r\n    const updatedItems = [...selectionItems];\r\n    updatedItems.splice(itemIdx, 1);\r\n    if (selectedValue === selectionItems[itemIdx] && updatedItems.length > 0) {\r\n      setSelectedValue(updatedItems[0]);\r\n    } else if (updatedItems.length === 0) {\r\n      setSelectedValue(\"\");\r\n    }\r\n    setSelectionItems(updatedItems);\r\n    newItemInputRef.current.focus();\r\n  };\r\n\r\n  return (\r\n    <MuiTextField\r\n      className={classes.selectFieldDefault}\r\n      select\r\n      fullWidth\r\n      value={selectedValue}\r\n      label=\"Default Value\"\r\n      onChange={handleOnChangeDefault}\r\n      variant=\"outlined\"\r\n    >\r\n      <MenuItem value=\"\">None</MenuItem>\r\n      {selectionItems.map((item, itemIdx) => (\r\n        <MenuItem key={`${idx}_${itemIdx}`} value={item.label}>\r\n          <span style={{ width: \"100%\" }}>{item.label}</span>\r\n\r\n          <SketchColorPicker\r\n            color={item.color}\r\n            includeWhite={true}\r\n            handleChange={(newColor) => {\r\n              setSelectionItems((prevItems) => {\r\n                const newItems = [...prevItems];\r\n                newItems[itemIdx].color = newColor;\r\n                return newItems;\r\n              });\r\n            }}\r\n          />\r\n          <Tooltip title=\"Delete Selection\" style={{ float: \"right\" }}>\r\n            <IconButton\r\n              onClick={(e) => handleOnDeleteSelectionItem(e, itemIdx)}\r\n            >\r\n              <DeleteIcon />\r\n            </IconButton>\r\n          </Tooltip>\r\n        </MenuItem>\r\n      ))}\r\n      <MenuItem\r\n        value=\"newItem\"\r\n        onKeyDown={(e) => e.stopPropagation()}\r\n        className={classes.newItem}\r\n      >\r\n        <form onSubmit={handleOnAddSelectionItem}>\r\n          <MuiTextField\r\n            fullWidth\r\n            label=\"new selection\"\r\n            value={newSelectionItemValue}\r\n            onClick={(e) => e.stopPropagation()}\r\n            onChange={handleOnUpdateSelectionItem}\r\n            inputRef={newItemInputRef}\r\n          />\r\n          <IconButton type=\"submit\" onClick={(e) => e.stopPropagation()}>\r\n            <AddIcon />\r\n          </IconButton>\r\n        </form>\r\n      </MenuItem>\r\n    </MuiTextField>\r\n  );\r\n};\r\n\r\nCaseSettingsEditableOptionsMenu.displayName = \"CaseSettingsEditableOptionsMenu\";\r\n\r\nexport default forwardRef(CaseSettingsEditableOptionsMenu);\r\n","import React, { useRef, forwardRef, useImperativeHandle } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport {\r\n  ListItem,\r\n  TextField,\r\n  MenuItem,\r\n  Tooltip,\r\n  IconButton,\r\n} from \"@mui/material\";\r\nimport DeleteIcon from \"@mui/icons-material/Delete\";\r\nimport EyeIconButton from \"./EyeIconButton\";\r\nimport CaseSettingsEditableOptionsMenu from \"./CaseSettingsEditableOptionsMenu\";\r\nimport DragIndicatorIcon from \"@mui/icons-material/DragIndicator\";\r\n\r\nimport { makeStyles } from \"@mui/styles\";\r\n\r\nconst useStyles = makeStyles({\r\n  selectFieldDatatype: {\r\n    width: 300,\r\n    marginRight: 5,\r\n  },\r\n});\r\n\r\nconst types = {\r\n  text: \"Text\",\r\n  options: \"Options\",\r\n  date: \"Date\",\r\n  textArea: \"Text Area\",\r\n};\r\n\r\nconst CaseSettingsListItem = forwardRef((props, forwardedRef) => {\r\n  const caseSettingsEditableOptionsMenuRef = useRef(null);\r\n\r\n  const { data, idx, onDeleteRow } = props;\r\n  const classes = useStyles();\r\n  const [label, setLabel] = React.useState(data.label);\r\n  const [dataType, setDataType] = React.useState(data.type);\r\n  const [defaultValue, setDefaultValue] = React.useState(data.defaultValue);\r\n  const [visible, setVisible] = React.useState(data.visible);\r\n\r\n  const isDisabled = data.label === \"Case Acc#\";\r\n\r\n  const getCaseData = () => {\r\n    let items = [];\r\n    let returnDefaultValue = defaultValue;\r\n    if (dataType === types.options) {\r\n      const optionsData =\r\n        caseSettingsEditableOptionsMenuRef.current.getOptionsData();\r\n      items = dataType === types.options ? optionsData.items : data.items;\r\n      returnDefaultValue = optionsData.defaultValue;\r\n    }\r\n\r\n    return {\r\n      label,\r\n      type: dataType,\r\n      defaultValue: returnDefaultValue,\r\n      visible,\r\n      items,\r\n    };\r\n  };\r\n\r\n  useImperativeHandle(forwardedRef, () => ({\r\n    getCaseData,\r\n  }));\r\n\r\n  return (\r\n    <ListItem>\r\n      {!isDisabled && (\r\n        <DragIndicatorIcon\r\n          style={{ cursor: \"pointer\" }}\r\n          className=\"drag-handle\"\r\n        />\r\n      )}\r\n      <TextField\r\n        className={classes.selectFieldDatatype}\r\n        name=\"Textfield\"\r\n        style={{ marginLeft: isDisabled ? 24 : 0 }}\r\n        disabled={isDisabled}\r\n        select\r\n        label=\"Datatype\"\r\n        variant=\"outlined\"\r\n        value={dataType}\r\n        onChange={(e) => setDataType(e.target.value)}\r\n      >\r\n        {Object.keys(types).map((key, idx) => {\r\n          return (\r\n            <MenuItem key={key + idx} value={types[key]}>\r\n              {types[key]}\r\n            </MenuItem>\r\n          );\r\n        })}\r\n      </TextField>\r\n      <TextField\r\n        style={{\r\n          marginRight: 5,\r\n        }}\r\n        name=\"Textfield\"\r\n        disabled={isDisabled}\r\n        fullWidth\r\n        variant=\"outlined\"\r\n        value={label}\r\n        label=\"Name\"\r\n        onChange={(e) => setLabel(e.target.value)}\r\n      />\r\n      {dataType === types.options && (\r\n        <CaseSettingsEditableOptionsMenu\r\n          ref={caseSettingsEditableOptionsMenuRef}\r\n          data={data}\r\n          idx={idx}\r\n        />\r\n      )}\r\n      {dataType === types.date && (\r\n        <TextField\r\n          className={classes.dataTypeFieldPreset}\r\n          name=\"Textfield\"\r\n          fullWidth\r\n          select\r\n          variant=\"outlined\"\r\n          value={defaultValue}\r\n          label=\"Default Value\"\r\n          onChange={(e) => {\r\n            setDefaultValue(e.target.value);\r\n          }}\r\n        >\r\n          <MenuItem value=\"None\">None</MenuItem>\r\n          <MenuItem value=\"Current Date\">Current Date</MenuItem>\r\n        </TextField>\r\n      )}\r\n      {dataType === types.text && (\r\n        <TextField\r\n          className={classes.dataTypeFieldPreset}\r\n          name=\"Textfield\"\r\n          fullWidth\r\n          disabled={isDisabled}\r\n          variant=\"outlined\"\r\n          value={defaultValue}\r\n          label=\"Default Value\"\r\n          onChange={(e) => {\r\n            setDefaultValue(e.target.value);\r\n          }}\r\n        />\r\n      )}\r\n      {dataType === types.textArea && (\r\n        <TextField\r\n          className={classes.dataTypeFieldPreset}\r\n          name=\"Textfield\"\r\n          fullWidth\r\n          multiline\r\n          minRows=\"1\"\r\n          variant=\"outlined\"\r\n          value={defaultValue}\r\n          label=\"Default Value area\"\r\n          onChange={(e) => {\r\n            setDefaultValue(e.target.value);\r\n          }}\r\n        />\r\n      )}\r\n      <Tooltip\r\n        title={visible ? \"Hide from default View!\" : \"Show in default View!\"}\r\n      >\r\n        <span>\r\n          <EyeIconButton\r\n            checked={visible}\r\n            onClick={() => setVisible((prevValue) => !prevValue)}\r\n          />\r\n        </span>\r\n      </Tooltip>\r\n\r\n      <Tooltip disableInteractive title={\"Delete Case Column!\"}>\r\n        <span>\r\n          <IconButton\r\n            disabled={isDisabled}\r\n            onClick={() => onDeleteRow(idx)}\r\n            size=\"large\"\r\n          >\r\n            <DeleteIcon />\r\n          </IconButton>\r\n        </span>\r\n      </Tooltip>\r\n    </ListItem>\r\n  );\r\n});\r\n\r\nCaseSettingsListItem.displayName = \"CaseSettingsListItem\";\r\n\r\nCaseSettingsListItem.propTypes = {\r\n  data: PropTypes.object.isRequired,\r\n  idx: PropTypes.number.isRequired,\r\n  onDeleteRow: PropTypes.func.isRequired,\r\n};\r\n\r\nexport default CaseSettingsListItem;\r\n","import React, { useRef, useEffect } from \"react\";\r\nimport {\r\n  Typography,\r\n  Tooltip,\r\n  Card,\r\n  CardContent,\r\n  CardActions,\r\n  Button,\r\n  Fab,\r\n} from \"@mui/material\";\r\n\r\nimport { DragDropContext, Droppable, Draggable } from \"react-beautiful-dnd\";\r\nimport Backend from \"../../common/utils/Backend\";\r\n\r\n// Icons\r\nimport AddIcon from \"@mui/icons-material/Add\";\r\n\r\nimport { makeStyles } from \"@mui/styles\";\r\n\r\nimport CaseSettingsListItem from \"./CaseSettingsListItem\";\r\n\r\nconst useStyles = makeStyles({\r\n  root: {\r\n    marginBottom: 20,\r\n  },\r\n  selectFieldDatatype: {\r\n    width: 300,\r\n    marginRight: 5,\r\n  },\r\n  selectFieldDefault: {\r\n    lineHeight: \"40px\",\r\n    \"& .MuiIconButton-root\": {\r\n      display: \"none\",\r\n    },\r\n    \"& .MuiSelect-select\": {\r\n      height: \"22px\",\r\n    },\r\n  },\r\n  defaultSelectInput: {\r\n    lineHeight: \"40px\",\r\n    \"& .MuiSelect-select\": {\r\n      height: \"22px\",\r\n    },\r\n  },\r\n  fab: {\r\n    marginLeft: \"auto !important\",\r\n  },\r\n});\r\n\r\nconst toColumnName = (inputString) => {\r\n  return inputString\r\n    .replace(/[^0-9a-zA-Z ]/g, \"\")\r\n    .toLowerCase()\r\n    .replace(/\\s+/g, \"_\");\r\n};\r\n\r\nconst CaseSettingsContainer = () => {\r\n  const classes = useStyles();\r\n  const cardContentRef = useRef(null); // create a ref\r\n  const [caseCols, setCaseCols] = React.useState([]);\r\n  const [listHeight, setListHeight] = React.useState(window.innerHeight - 350);\r\n  const [savedAppsettings, setSavedAppsettings] = React.useState({});\r\n  const [appsettings, setAppsettings] = React.useState({});\r\n\r\n  React.useEffect(() => {\r\n    Backend.readAppSettings().then((newAppsettings) => {\r\n      const caseColumns = newAppsettings.caseColumns.map((caseCol) => {\r\n        if (caseCol.items === null) {\r\n          caseCol.items = [];\r\n        }\r\n        caseCol.visible =\r\n          typeof caseCol.visible === \"undefined\" || caseCol.visible === \"true\";\r\n\r\n        return caseCol;\r\n      });\r\n      setCaseCols(caseColumns);\r\n      setAppsettings(newAppsettings);\r\n      setSavedAppsettings(newAppsettings);\r\n    });\r\n    const handleResize = () => {\r\n      setListHeight(window.innerHeight - 350);\r\n    };\r\n\r\n    window.addEventListener(\"resize\", handleResize);\r\n\r\n    // Cleanup function to remove the event listener when the component unmounts or the effect runs again\r\n    return () => {\r\n      window.removeEventListener(\"resize\", handleResize);\r\n    };\r\n  }, []);\r\n\r\n  // Create a ref for each CaseSettingsListItem\r\n  const caseColRefs = useRef([]);\r\n  useEffect(() => {\r\n    caseColRefs.current = caseColRefs.current.slice(0, caseCols.length);\r\n  }, [caseCols]);\r\n\r\n  const isAppsettingsValid = () => {\r\n    return Object.keys(appsettings).length > 4;\r\n  };\r\n\r\n  const onDeleteRow = (idx) => {\r\n    setCaseCols((prevValues) => {\r\n      let newCaseCols = [...prevValues];\r\n      newCaseCols.splice(idx, 1);\r\n      return newCaseCols;\r\n    });\r\n  };\r\n\r\n  const handleConfirmation = async (deleteColumnData, newAppsettings) => {\r\n    const continueSave = await window.openConfirmationDialog(\r\n      deleteColumnData.length > 1\r\n        ? \"Possible Data Loss detected\"\r\n        : \"No Data loss detected!\",\r\n      deleteColumnData.length > 1\r\n        ? deleteColumnData.map((item, idx) => <div key={idx}>{item}</div>)\r\n        : \"The changes seem to not have any effect on already existing Cases.\"\r\n    );\r\n    if (continueSave) {\r\n      Backend.writeAppSettings(newAppsettings, (response) => {\r\n        if (response.success) {\r\n          window.showSuccessSnackbar(\"Case Settings saved!\");\r\n          setSavedAppsettings(newAppsettings);\r\n        } else {\r\n          window.showErrorSnackbar(\r\n            \"Something went wrong! Case Settings no saved!\"\r\n          );\r\n        }\r\n      });\r\n    }\r\n  };\r\n\r\n  const getValidatedCaseCols = () => {\r\n    const result = caseCols.map((_, idx) => {\r\n      const caseCol = caseColRefs.current[idx].getCaseData();\r\n      const caseColIdx = savedAppsettings.caseColumns.findIndex(\r\n        (caseColumn) => caseColumn.name === caseCol.name\r\n      );\r\n      if (caseColIdx === -1) {\r\n        caseCol.name = toColumnName(caseCol.label);\r\n      }\r\n      return caseCol;\r\n    });\r\n    return result;\r\n  };\r\n\r\n  const onSave = () => {\r\n    if (isAppsettingsValid()) {\r\n      let newAppsettings = appsettings;\r\n      newAppsettings.caseColumns = getValidatedCaseCols();\r\n\r\n      // Same with writeAppSettings, to write table\r\n      Backend.getPossibleCaseSettingsChanges(newAppsettings, (response) => {\r\n        if (response.criticalColumns) {\r\n          let deleteColumnData = [\r\n            \"Do you really want to accept this change. You will lose the following Data of existing Cases?\",\r\n          ];\r\n          for (const [key, value] of Object.entries(response.criticalColumns)) {\r\n            const column = savedAppsettings.caseColumns.find(\r\n              (item) => item.name === key\r\n            );\r\n            deleteColumnData.push(\r\n              `${column ? column.label : key} with ${value} non empty ${\r\n                value === 1 ? \"entry\" : \"entries\"\r\n              }!`\r\n            );\r\n          }\r\n          handleConfirmation(deleteColumnData, newAppsettings);\r\n        }\r\n      });\r\n    } else {\r\n      window.showErrorSnackbar(\"Error: Something went wrong!\");\r\n    }\r\n  };\r\n\r\n  const onDragEnd = (result) => {\r\n    if (!result.destination) {\r\n      return;\r\n    }\r\n\r\n    setCaseCols((prevValues) => {\r\n      let newCaseCols = [...prevValues];\r\n      const [reorderedItem] = newCaseCols.splice(result.source.index, 1);\r\n      newCaseCols.splice(result.destination.index, 0, reorderedItem);\r\n      return newCaseCols;\r\n    });\r\n  };\r\n\r\n  const addRow = () => {\r\n    setCaseCols((prevCaseCols) => [\r\n      ...prevCaseCols,\r\n      {\r\n        name: \"case_setting_\" + prevCaseCols.length,\r\n        label: \"Case Setting \" + prevCaseCols.length,\r\n        type: \"Text\",\r\n        defaultValue: \"\",\r\n        items: [],\r\n      },\r\n    ]);\r\n    const cardContentEl = cardContentRef.current; // get the DOM element\r\n    if (cardContentEl) {\r\n      cardContentEl.scrollTo({\r\n        top: cardContentEl.scrollHeight,\r\n        behavior: \"smooth\",\r\n      });\r\n      setTimeout(\r\n        () =>\r\n          cardContentEl.scrollTo({\r\n            top: cardContentEl.scrollHeight,\r\n            behavior: \"smooth\",\r\n          }),\r\n        100\r\n      );\r\n    }\r\n  };\r\n\r\n  const caseAccCol = caseCols.find((caseCol) => caseCol.label === \"Case Acc#\");\r\n\r\n  const renderCol = (idx, data) => {\r\n    return (\r\n      <CaseSettingsListItem\r\n        ref={(el) => (caseColRefs.current[idx] = el)}\r\n        data={data}\r\n        idx={idx}\r\n        onDeleteRow={onDeleteRow}\r\n      />\r\n    );\r\n  };\r\n\r\n  return (\r\n    <Card>\r\n      <CardContent\r\n        ref={cardContentRef}\r\n        style={{ height: listHeight, overflow: \"auto\" }}\r\n      >\r\n        <Typography variant=\"h6\">Case Settings</Typography>\r\n        {caseAccCol && renderCol(0, caseAccCol)}\r\n        <DragDropContext onDragEnd={onDragEnd}>\r\n          <Droppable droppableId=\"list\">\r\n            {(provided) => (\r\n              <div ref={provided.innerRef} {...provided.droppableProps}>\r\n                {caseCols.map((data, idx) => {\r\n                  if (data.label === \"Case Acc#\") {\r\n                    return null;\r\n                  }\r\n                  return (\r\n                    <Draggable\r\n                      key={data.name}\r\n                      draggableId={data.name}\r\n                      index={idx}\r\n                    >\r\n                      {(provided) => {\r\n                        return (\r\n                          <div\r\n                            ref={provided.innerRef}\r\n                            {...provided.draggableProps}\r\n                            {...provided.dragHandleProps}\r\n                            style={{\r\n                              userSelect: \"none\",\r\n                              ...provided.draggableProps.style,\r\n                            }}\r\n                          >\r\n                            {renderCol(idx, data)}\r\n                          </div>\r\n                        );\r\n                      }}\r\n                    </Draggable>\r\n                  );\r\n                })}\r\n                <div style={{ height: 0 }}>{provided.placeholder}</div>\r\n              </div>\r\n            )}\r\n          </Droppable>\r\n        </DragDropContext>\r\n      </CardContent>\r\n      <CardActions>\r\n        <Button\r\n          size=\"small\"\r\n          color=\"primary\"\r\n          variant=\"outlined\"\r\n          onClick={onSave}\r\n        >\r\n          Save\r\n        </Button>\r\n        <Tooltip title=\"Add new Case Column!\" disableInteractive>\r\n          <Fab\r\n            color=\"primary\"\r\n            aria-label=\"add\"\r\n            className={classes.fab}\r\n            onClick={addRow}\r\n          >\r\n            <AddIcon />\r\n          </Fab>\r\n        </Tooltip>\r\n      </CardActions>\r\n    </Card>\r\n  );\r\n};\r\nexport default CaseSettingsContainer;\r\n","import React from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport { Tabs, Tab, Container, Paper } from \"@mui/material\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n\r\nimport SystemContainer from \"./components/SystemContainer\";\r\nimport UsersContainer from \"./components/UsersContainer\";\r\nimport GroupsContainer from \"./components/GroupsContainer\";\r\nimport ImporterContainer from \"./components/ImporterContainer\";\r\nimport ModuleCreationContainer from \"./components/ModuleCreationContainer\";\r\nimport Backend from \"../common/utils/Backend\";\r\nimport CaseSettingsContainer from \"./components/CaseSettingsContainer\";\r\n\r\nconst styles = (theme) => ({\r\n  root: {\r\n    flexGrow: 1,\r\n    width: \"100%\",\r\n    height: \"calc(100vh - 64px)\",\r\n    overflow: \"auto\",\r\n  },\r\n  paper: {\r\n    marginTop: theme.spacing(8),\r\n    display: \"flex\",\r\n    flexDirection: \"column\",\r\n  },\r\n  rootContent: {\r\n    margin: 0,\r\n    width: \"100%\",\r\n  },\r\n});\r\n\r\nconst ActiveTab = Object.freeze({\r\n  Users: 0,\r\n  Groups: 1,\r\n  Cases: 2,\r\n  System: 3,\r\n  Import: 4,\r\n  ModuleCreation: 5,\r\n});\r\n\r\nclass AdminPage extends React.Component {\r\n  constructor(props) {\r\n    super(props);\r\n\r\n    this.state = {\r\n      groups: [],\r\n      users: [],\r\n      userGroupIds: [],\r\n      isSuperAdmin: false,\r\n      activeTab: ActiveTab.Users,\r\n      user: {\r\n        group: {\r\n          canEditGroups: false,\r\n          canEditUserGroups: false,\r\n          canEditUsers: false,\r\n          canSetJobRunTimes: false,\r\n          canCreateModules: false,\r\n          canUseSystemActions: false,\r\n          canEditAutoImportSettings: false,\r\n        },\r\n      },\r\n    };\r\n  }\r\n\r\n  componentDidMount() {\r\n    this.updateUserList();\r\n    this.updateUser();\r\n  }\r\n\r\n  updateUser = () => {\r\n    Backend.getCurrentUser((user) => {\r\n      this.setState({\r\n        user,\r\n      });\r\n    });\r\n  };\r\n\r\n  countPermissions = (group) => {\r\n    let result = Object.values(group).reduce((accumulator, currentValue) => {\r\n      if (currentValue === true) return accumulator + 1;\r\n      else return accumulator;\r\n    }, 0);\r\n    return result;\r\n  };\r\n\r\n  updateGroups = () => {\r\n    this.updateUser();\r\n    Backend.loadGroupList((data) => {\r\n      const groups = data.sort((a, b) => {\r\n        if (a.name === \"Super Admin\") return -1;\r\n        if (b.name === \"Super Admin\") return 1;\r\n        return this.countPermissions(b) - this.countPermissions(a);\r\n      });\r\n      this.setState({ groups }, this.updateUserList);\r\n    });\r\n  };\r\n\r\n  updateUserList = () => {\r\n    Backend.loadUserList((data) => {\r\n      this.setState({ users: data });\r\n    });\r\n    Backend.getCurrentUserGroups((response) => {\r\n      const { groups } = this.state;\r\n\r\n      const userGroupIds = response.map((item) => item.id);\r\n\r\n      let isSuperAdmin = false;\r\n      if (groups.length > 0) {\r\n        const superAdminId = groups.find(\r\n          (group) => group.name === \"Super Admin\"\r\n        ).id;\r\n        isSuperAdmin = userGroupIds.includes(superAdminId);\r\n      }\r\n\r\n      this.setState({ userGroupIds, isSuperAdmin });\r\n    });\r\n  };\r\n\r\n  saveClick = () => {};\r\n\r\n  onTabChange = (event, newValue) => {\r\n    this.setState({ activeTab: newValue });\r\n  };\r\n\r\n  render() {\r\n    const { user, userGroupIds, activeTab } = this.state;\r\n    const { classes } = this.props;\r\n    let activeComponent;\r\n    switch (activeTab) {\r\n      case ActiveTab.Users:\r\n        activeComponent = (\r\n          <UsersContainer\r\n            users={this.state.users}\r\n            groups={this.state.groups}\r\n            updateGroups={this.updateGroups}\r\n            updateUserList={this.updateUserList}\r\n            canEditUsers={user.group.canEditUsers}\r\n            canEditUserGroups={user.group.canEditUserGroups}\r\n          />\r\n        );\r\n        break;\r\n      case ActiveTab.Groups:\r\n        activeComponent = (\r\n          <GroupsContainer\r\n            groups={this.state.groups}\r\n            updateGroups={this.updateGroups}\r\n            user={user}\r\n            isSuperAdmin={this.state.isSuperAdmin}\r\n            userGroupIds={userGroupIds}\r\n          />\r\n        );\r\n        break;\r\n      case ActiveTab.Cases:\r\n        activeComponent = <CaseSettingsContainer />;\r\n        break;\r\n      case ActiveTab.System:\r\n        activeComponent = (\r\n          <SystemContainer\r\n            canSetJobRunTimes={user.group.canSetJobRunTimes}\r\n            canUseSystemActions={user.group.canUseSystemActions}\r\n          />\r\n        );\r\n        break;\r\n      case ActiveTab.Import:\r\n        activeComponent = (\r\n          <ImporterContainer\r\n            canEditAutoImportSettings={user.group.canEditAutoImportSettings}\r\n          />\r\n        );\r\n        break;\r\n      case ActiveTab.ModuleCreation:\r\n        activeComponent = <ModuleCreationContainer />;\r\n        break;\r\n      default:\r\n        activeComponent = null;\r\n    }\r\n    return (\r\n      <div className={classes.root}>\r\n        <Container maxWidth=\"md\">\r\n          <Paper className={classes.paper}>\r\n            <Tabs\r\n              variant=\"fullWidth\"\r\n              indicatorColor=\"primary\"\r\n              textColor=\"primary\"\r\n              value={activeTab}\r\n              onChange={this.onTabChange}\r\n            >\r\n              <Tab label=\"Users\" />\r\n              <Tab label=\"Groups\" />\r\n              <Tab label=\"Case Settings\" />\r\n              <Tab label=\"System Actions\" />\r\n              <Tab label=\"Auto Import Settings\" />\r\n              {user.group.canCreateModules && (\r\n                <Tab label=\"Create Project Module\" />\r\n              )}\r\n            </Tabs>\r\n            {activeComponent}\r\n          </Paper>\r\n        </Container>\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nAdminPage.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n};\r\n\r\nexport default withStyles(styles)(AdminPage);\r\n","// Framework imports\r\nimport React, { useState, useEffect, useContext, useRef } from \"react\";\r\nimport { PropTypes } from \"prop-types\";\r\n\r\n// Package imports\r\nimport { v4 as uuidv4 } from \"uuid\";\r\n\r\n// HSA imports\r\nimport Backend from \"../../common/utils/Backend\";\r\nimport { roundToDecimal } from \"../../common/utils/Utils\";\r\n\r\nimport Structure from \"../../common/components/Structure\";\r\nimport {\r\n  AudioRoi,\r\n  ModificationStatus,\r\n  RoiType,\r\n  AnnotationAction,\r\n  saveAnnotations,\r\n  exportAnnotations,\r\n  importAnnotations,\r\n  deleteAllAnnotations,\r\n} from \"../../common/components/RoiTypes\";\r\nimport { AudioViewerContext } from \"../AudioViewer\";\r\nimport { AudioFileContext } from \"./AudioFileContainer\";\r\nimport { Tooltip } from \"@mui/material\";\r\n\r\n/**\r\n * Collected (reusable) styles for page elements.\r\n */\r\nconst styles = {\r\n  root: {\r\n    width: \"100%\",\r\n    height: \"30px\",\r\n    display: \"grid\",\r\n    gridTemplateColumns: \"auto 1fr\",\r\n  },\r\n  label: {\r\n    padding: \"0 5px\",\r\n    whiteSpace: \"nowrap\",\r\n    overflow: \"hidden\",\r\n    textOverflow: \"ellipsis\",\r\n  },\r\n  canvasContainer: {\r\n    width: \"100%\",\r\n    userSelect: \"none\",\r\n    overflow: \"hidden\",\r\n  },\r\n};\r\n\r\n/**\r\n * Distance in px to determine if something is nearby.\r\n */\r\nconst DELTA = 5;\r\n\r\n/**\r\n * Displays audio annotations of a given audio file / stream per structure.\r\n * Allows the creation, modification, and deletion of annotations per structure.\r\n * @param {object} file The file being annotated.\r\n * @param {object} structure The structure being annotated.\r\n * @param {bool} saveNow Request to save the annotations of this item.\r\n * @param {function} reportSaveStatus A way to report the current save status back. Receives (bool isSaved).\r\n * @param {bool} removeOverlaps Optional. Whether or not to remove overlaps between neighboring annotations. Defaults to true.\r\n * @param {number} mouseX Current horizontal mouse position relative to drawing canvas.\r\n * @param {function} setMouseX Set the current horizontal mouse position relative to drawing canvas. Receives (number mouseX)\r\n * @param {bool} isVisible Optional. Whether the annotation item is visible or not. Defaults to true.\r\n * @returns React node for AudioAnnotationItem\r\n */\r\nexport default function AudioAnnotationItem(props) {\r\n  const {\r\n    file,\r\n    structure,\r\n    saveNow,\r\n    reportSaveStatus,\r\n    removeOverlaps = true,\r\n    mouseX,\r\n    setMouseX,\r\n    isVisible = true,\r\n    visibleTimeRange,\r\n    ...other\r\n  } = props;\r\n\r\n  const prevTimeRange = useRef(visibleTimeRange);\r\n\r\n  // External project and file information\r\n  const AudioViewer = useContext(AudioViewerContext);\r\n  const { containerWidth } = AudioViewer;\r\n  const AudioFile = useContext(AudioFileContext);\r\n  const { isDrawing, setIsDrawing } = AudioViewer;\r\n\r\n  // Canvas where annotations are drawn.\r\n  const canvasContainer = React.useRef();\r\n  const canvas = React.useRef();\r\n  const [canvasWidth, setCanvasWidth] = useState(100);\r\n  const [cursor, setCursor] = useState(\"inherit\");\r\n  const [isKeyboardDrawing, setKeyboardDrawing] = useState(false);\r\n\r\n  // Annotations\r\n  const [annotations, setAnnotations] = useState([]);\r\n  const data = React.useRef({\r\n    currentAnnotation: null,\r\n    actionState: null,\r\n  }).current;\r\n\r\n  //#region Effects\r\n\r\n  // Load annotations on first render\r\n  useEffect(() => {\r\n    // Load annotations only for this file\r\n    Backend.loadAnnotationsFromDB(\r\n      AudioViewer.project.id,\r\n      RoiType.AudioRoi,\r\n      { fileId: file.id, structure: structure.id },\r\n      (newRois) => setAnnotations(newRois),\r\n      (err) =>\r\n        window.showErrorSnackbar(\r\n          `Could not load annotations of file ${file.label}:\\n${err}`\r\n        )\r\n    );\r\n  }, []);\r\n\r\n  useEffect(() => {\r\n    if (!isDrawing && data.actionState !== null) {\r\n      endAnnotation();\r\n    }\r\n  }, [isDrawing]);\r\n\r\n  // Ensure to update canvas when annotations are updated\r\n  useEffect(() => {\r\n    updateCanvas();\r\n  }, [\r\n    annotations,\r\n    mouseX,\r\n    AudioFile.timestamp,\r\n    AudioViewer.structures,\r\n    AudioViewer.selectedStructure,\r\n    visibleTimeRange,\r\n  ]);\r\n\r\n  // Resizing\r\n  useEffect(() => {\r\n    handleResize();\r\n  }, [containerWidth]);\r\n\r\n  // Save annotations on request\r\n  useEffect(() => {\r\n    if (!saveNow) return;\r\n    saveAnnotations(\r\n      AudioViewer.project.id,\r\n      file,\r\n      structure,\r\n      RoiType.AudioRoi,\r\n      annotations,\r\n      (newAnnos) => {\r\n        setAnnotations(newAnnos);\r\n        reportSaveStatus(true);\r\n      },\r\n      () => reportSaveStatus(false)\r\n    );\r\n  }, [saveNow]);\r\n\r\n  // Perform predefined actions on request\r\n  useEffect(() => {\r\n    // Find relevant export tasks for this structure/file combination\r\n    const allTasks = AudioViewer.childActions;\r\n    const ownTasks = AudioViewer.childActions.filter(\r\n      (a) => a.fileId === file.id && a.structureId === structure.id\r\n    );\r\n\r\n    // None found -> Do nothing\r\n    if (ownTasks.length === 0) return;\r\n\r\n    ownTasks.forEach((task) => {\r\n      switch (task.task) {\r\n        case AnnotationAction.Save:\r\n          // Save all annotations of this structure to database.\r\n          saveAnnotations(\r\n            AudioViewer.project.id,\r\n            file,\r\n            structure,\r\n            RoiType.AudioRoi,\r\n            annotations,\r\n            (newAnnos) => {\r\n              setAnnotations(newAnnos);\r\n              reportSaveStatus(true);\r\n            },\r\n            () => reportSaveStatus(false)\r\n          );\r\n          break;\r\n\r\n        case AnnotationAction.Export:\r\n          // Export annotations to file.\r\n          exportAnnotations(\r\n            AudioViewer.user.fullName,\r\n            AudioViewer.project,\r\n            file,\r\n            structure,\r\n            RoiType.AudioRoi,\r\n            annotations\r\n          );\r\n          break;\r\n\r\n        case AnnotationAction.Import:\r\n          // Import annotations from previously exported file.\r\n          importAnnotations(\r\n            RoiType.AudioRoi,\r\n            annotations,\r\n            file,\r\n            structure,\r\n            (newAnnos) => {\r\n              setAnnotations(newAnnos);\r\n              reportSaveStatus(false);\r\n              window.showSuccessSnackbar(\r\n                `Successfully imported annotations for ${structure.label}`\r\n              );\r\n            },\r\n            (err) => {\r\n              window.showErrorSnackbar(err);\r\n            }\r\n          );\r\n          break;\r\n\r\n        case AnnotationAction.DeleteAll:\r\n          // Delete all annotations of this structure.\r\n          deleteAllAnnotations(annotations, structure, (annos) => {\r\n            setAnnotations(annos);\r\n            reportSaveStatus(false);\r\n          });\r\n\r\n          break;\r\n\r\n        default:\r\n          console.error(\r\n            `Unsupported action, received ${typeof task.task}: ${task.task}`\r\n          );\r\n      }\r\n\r\n      // Remove task when completed\r\n      allTasks.splice(\r\n        allTasks.findIndex(\r\n          (a) =>\r\n            a.fileId === file.id &&\r\n            a.structureId === structure.id &&\r\n            a.task === task.task\r\n        ),\r\n        1\r\n      );\r\n    });\r\n\r\n    // Update global tasks\r\n    AudioViewer.setChildActions(allTasks);\r\n  }, [AudioViewer.childActions]);\r\n\r\n  /**\r\n   * Update Annotation on timestamp change.\r\n   */\r\n  useEffect(() => {\r\n    if (!isKeyboardDrawing) return;\r\n    if (!AudioViewer.isDrawing) return;\r\n    if (!data.currentAnnotation?.x1) return;\r\n\r\n    if (\r\n      prevTimeRange.current &&\r\n      prevTimeRange.current[0] !== visibleTimeRange[0]\r\n    ) {\r\n      const timeDeltaX = visibleTimeRange[0] - prevTimeRange.current[0];\r\n      const pixelDeltaX =\r\n        timeDeltaX *\r\n        (canvasWidth / (visibleTimeRange[1] - visibleTimeRange[0]));\r\n\r\n      updateAnnotation(\r\n        data.currentAnnotation.x1 - pixelDeltaX,\r\n        timestampToPx(AudioFile.timestamp)\r\n      );\r\n      prevTimeRange.current = visibleTimeRange;\r\n      return;\r\n    }\r\n\r\n    updateAnnotation(\r\n      data.currentAnnotation.x1,\r\n      timestampToPx(AudioFile.timestamp)\r\n    );\r\n  }, [AudioFile.timestamp]);\r\n\r\n  useEffect(() => {\r\n    /**\r\n     * Decide what happens on any keypress event.\r\n     * @param {KeyboardEvent} e Keypress event.\r\n     */\r\n    const handleKeyPress = (e) => {\r\n      if (AudioFile.disableKeyboardShortcuts) return;\r\n      if (structure !== AudioViewer.selectedStructure) return;\r\n\r\n      if (e.shiftKey) {\r\n        // Key + Shiftkey\r\n        switch (e.code) {\r\n          case \"Enter\":\r\n            if (AudioViewer.isDrawing) {\r\n              // End drawing\r\n              setKeyboardDrawing(false);\r\n              setIsDrawing(false);\r\n              endAnnotation();\r\n            } else {\r\n              // Begin drawing\r\n              setKeyboardDrawing(true);\r\n              setIsDrawing(true);\r\n              data.actionState = \"deleting\";\r\n              initializeAnnotation(\r\n                timestampToPx(AudioFile.timestamp),\r\n                \"deleting\"\r\n              );\r\n            }\r\n            e.preventDefault();\r\n            return;\r\n          default:\r\n            return;\r\n        }\r\n      }\r\n\r\n      // Normal Key presses\r\n      switch (e.code) {\r\n        case \"Enter\":\r\n          if (AudioViewer.isDrawing) {\r\n            // End drawing\r\n            setKeyboardDrawing(false);\r\n            setIsDrawing(false);\r\n            endAnnotation();\r\n          } else {\r\n            // Begin drawing\r\n            setKeyboardDrawing(true);\r\n            setIsDrawing(true);\r\n            data.actionState = \"drawing\";\r\n            initializeAnnotation(timestampToPx(AudioFile.timestamp), \"drawing\");\r\n          }\r\n          e.preventDefault();\r\n          return;\r\n        default:\r\n          return;\r\n      }\r\n    };\r\n    window.addEventListener(\"keydown\", handleKeyPress);\r\n    return () => {\r\n      window.removeEventListener(\"keydown\", handleKeyPress);\r\n    };\r\n  }, [AudioViewer.selectedStructure, AudioFile.timestamp, canvasWidth]);\r\n\r\n  //#endregion\r\n  //#region Helper functions\r\n\r\n  /**\r\n   * Get cursor positioon in canvas-coordinates.\r\n   * @param {event} e Mouse event.\r\n   * @returns {array} [x, y] position of cursor relative to canvas.\r\n   */\r\n  const getX = (e) => {\r\n    const drawRect = canvas.current.getBoundingClientRect();\r\n    const x = e.pageX - drawRect.x;\r\n    return x;\r\n  };\r\n\r\n  /**\r\n   * Check if an annotaion beginning or end is close to a horizontal mouse position.\r\n   * @param {number} value Value to check against.\r\n   * @param {number} x Horizontal position of cursor.\r\n   * @returns {boolean} Whether the cursor is within the delta of the value to compare to.\r\n   */\r\n  const isValueNearby = (value, x) => {\r\n    return x > value - DELTA && x < value + DELTA;\r\n  };\r\n\r\n  /**\r\n   * Convert a pixel value to a timestamp proportional to the canvas width and audio duration.\r\n   * @param {int} pxValue Pixel value of an annotation relative to its drawing canvas.\r\n   * @returns {number} Timestamp of audio file with 3 digit precision.\r\n   */\r\n  const pxToTimestamp = (pxValue) => {\r\n    return roundToDecimal(\r\n      (pxValue / canvasWidth) * AudioFile.audio.duration(),\r\n      3\r\n    );\r\n  };\r\n\r\n  /**\r\n   * Convert a timestamp to a pixel value proportional to the canvas width and audio duration.\r\n   * @param {number} timestampValue Timestamp of audiofile.\r\n   * @returns {number} Pixel value of an annotation relative to its drawing canvas.\r\n   */\r\n  const timestampToPx = (timestampValue) => {\r\n    const startTime = visibleTimeRange[0];\r\n    const endTime =\r\n      visibleTimeRange[1] > 0\r\n        ? visibleTimeRange[1]\r\n        : AudioFile.audio.duration();\r\n    const visibleDuration = endTime - startTime;\r\n    const visibleTimeStampValue = timestampValue - startTime;\r\n    return roundToDecimal(\r\n      (visibleTimeStampValue / visibleDuration) * canvasWidth,\r\n      1\r\n    );\r\n  };\r\n\r\n  const timeAsPx = (timeValue) => {\r\n    const visibleTimeStampValue = timeValue;\r\n    return roundToDecimal(\r\n      (visibleTimeStampValue / AudioFile.audio.duration()) * canvasWidth,\r\n      1\r\n    );\r\n  };\r\n\r\n  const isOverlapping = (anno1, anno2) => {\r\n    // return !(anno1.maxX < anno2.minX && anno1.minX > anno2.maxX);\r\n    return !(anno1.maxX < anno2.minX || anno1.minX > anno2.maxX);\r\n  };\r\n\r\n  const isInside = (anno1, anno2) => {\r\n    return (\r\n      Math.min(anno1.minX, anno1.maxX) > Math.min(anno2.minX, anno2.maxX) &&\r\n      Math.max(anno1.minX, anno1.maxX) < Math.max(anno2.minX, anno2.maxX)\r\n    );\r\n  };\r\n\r\n  const isValueInside = (value, anno) => {\r\n    return value > anno.minX && value < anno.maxX;\r\n  };\r\n\r\n  const getCanvasWidth = () => {\r\n    return canvasContainer.current?.getBoundingClientRect().width;\r\n  };\r\n\r\n  const getPixelAnnotations = () => {\r\n    // Show nothing with invisible annotations\r\n    if (!structure.annotationsAreVisible) return [];\r\n    return annotations\r\n      .filter((a) => a.modificationStatus !== ModificationStatus.Deleted)\r\n      .map((anno) => {\r\n        return convertToPixelAnnotation(anno);\r\n      });\r\n  };\r\n\r\n  /**\r\n   * Get start and end of a saved AudioRoi, so it can be displayed inside canvas.\r\n   * @param {AudioRoi} anno Annotation to display inside canvas.\r\n   * @returns {object} Annotaion consisting of minX and maxX in px.\r\n   */\r\n  const convertToPixelAnnotation = (anno) => {\r\n    return {\r\n      minX: timestampToPx(anno.startTime),\r\n      maxX: timestampToPx(anno.endTime),\r\n    };\r\n  };\r\n\r\n  /**\r\n   * Methods to execute on canvas resize\r\n   */\r\n  const handleResize = () => {\r\n    setCanvasWidth(getCanvasWidth());\r\n    setMouseX(Math.random()); //force update\r\n    updateCanvas();\r\n  };\r\n  //#endregion\r\n\r\n  //#region Annotation Operations\r\n\r\n  /**\r\n   * Initializes a new annotation on its first creation.\r\n   * @param {number} x Hozizontal mouse position in px realtive to annotation canvas.\r\n   * @param {string} newActionState Action state of canvas. Can be drawing, deleting, grab, grabbing, null.\r\n   * @returns\r\n   */\r\n  const initializeAnnotation = (x, newActionState) => {\r\n    prevTimeRange.current = visibleTimeRange;\r\n    updateAnnotation(x, x);\r\n    if (newActionState !== \"drawing\") return;\r\n\r\n    for (let annoIdx in annotations) {\r\n      const audioAnno = annotations[annoIdx];\r\n      if (audioAnno.modificationStatus === ModificationStatus.Deleted) continue;\r\n      const anno = convertToPixelAnnotation(audioAnno);\r\n\r\n      if (isValueNearby(anno.minX, x)) {\r\n        updateAnnotation(anno.maxX, x);\r\n        annotations.splice(annoIdx, 1);\r\n        break;\r\n      } else if (isValueNearby(anno.maxX, x)) {\r\n        updateAnnotation(anno.minX, x);\r\n        annotations.splice(annoIdx, 1);\r\n        break;\r\n      } else if (isValueInside(x, anno)) {\r\n        updateAnnotation(anno.minX, anno.maxX);\r\n        annotations.splice(annoIdx, 1);\r\n        if (!isKeyboardDrawing) setCursor(\"grabbing\");\r\n      }\r\n    }\r\n  };\r\n\r\n  /**\r\n   * Updates an annotation with updated coordinates.\r\n   * @param {number} x1 1st horizontal coordinate in px relative to canvas.\r\n   * @param {number} x2 2nd horizontal coordinate in px relative to canvas.\r\n   */\r\n  const updateAnnotation = (x1, x2) => {\r\n    data.currentAnnotation = {\r\n      x1: x1,\r\n      x2: x2,\r\n      minX: Math.min(x1, x2),\r\n      maxX: Math.max(x1, x2),\r\n    };\r\n  };\r\n\r\n  /**\r\n   * Convert a temporary, pixel-based annotation to an AudioRoi object and save it.\r\n   * @param {object} tmpAnn Temporary, pixel-based annotation with minX and maxX properties.\r\n   * @param {array} modifiedAnnotations Optional. Modified existing annotations to use instead of current annotatations. Defaults to current annotations.\r\n   * @returns {AudioRoi} Completed AudioRoi object.\r\n   */\r\n  const finalizeAnnotation = (tmpAnn, modifiedAnnotations = annotations) => {\r\n    const minX = Math.max(0, pxToTimestamp(tmpAnn.minX));\r\n    const maxX = Math.min(\r\n      pxToTimestamp(tmpAnn.maxX),\r\n      AudioFile.audio.duration()\r\n    );\r\n\r\n    let tmpAnnotations = modifiedAnnotations;\r\n\r\n    // Do not create zero-width annotations\r\n    if (isNaN(minX) || isNaN(maxX) || minX === maxX) return;\r\n\r\n    const newAnnotation = new AudioRoi(\r\n      uuidv4(),\r\n      file.id,\r\n      structure.id,\r\n      false,\r\n      AudioViewer.user.id,\r\n      ModificationStatus.Added,\r\n      minX,\r\n      maxX,\r\n      0,\r\n      32000,\r\n      [0]\r\n    );\r\n\r\n    // Add new annotation\r\n    tmpAnnotations.push(newAnnotation);\r\n    setAnnotations(tmpAnnotations);\r\n\r\n    // Mark annotations as changed\r\n    reportSaveStatus(false);\r\n  };\r\n\r\n  const getAnnotationTransformed = (minX, maxX) => {\r\n    if (visibleTimeRange[1] > 0) {\r\n      const audioDuration = AudioFile.audio.duration();\r\n      const deltaX = maxX - minX;\r\n      const visibleDuration = visibleTimeRange[1] - visibleTimeRange[0];\r\n      const factor = visibleDuration / audioDuration;\r\n      const delatXTransofrmed = deltaX * factor;\r\n      const minTimestampPx = timeAsPx(visibleTimeRange[0]);\r\n      minX = minX * factor + minTimestampPx;\r\n      maxX = minX + delatXTransofrmed;\r\n    }\r\n    return { minX, maxX };\r\n  };\r\n\r\n  const mergeOverlappingAnnotations = () => {\r\n    let existingAnnotations = annotations;\r\n    let { minX, maxX } = getAnnotationTransformed(\r\n      data.currentAnnotation.minX,\r\n      data.currentAnnotation.maxX\r\n    );\r\n\r\n    existingAnnotations\r\n      .filter((a) => a.modificationStatus !== ModificationStatus.Deleted)\r\n      .forEach((existingAnno) => {\r\n        const anno = convertToPixelAnnotation(existingAnno);\r\n        const transformedAnnot = getAnnotationTransformed(anno.minX, anno.maxX);\r\n        if (isOverlapping(transformedAnnot, { minX, maxX })) {\r\n          minX = Math.min(transformedAnnot.minX, minX);\r\n          maxX = Math.max(transformedAnnot.maxX, maxX);\r\n          // Delete modified existing annotation\r\n          if (existingAnno.modificationStatus === ModificationStatus.Saved) {\r\n            // Mark saved annotation as to delete.\r\n            existingAnno.modificationStatus = ModificationStatus.Deleted;\r\n\r\n            // Mark annotations as changed\r\n            reportSaveStatus(false);\r\n          } else {\r\n            // Remove annotation not yet saved to database\r\n            const existingAnnoIdx = existingAnnotations.findIndex(\r\n              (a) => a.id === existingAnno.id\r\n            );\r\n            if (existingAnnoIdx > -1) {\r\n              existingAnnotations.splice(existingAnnoIdx, 1);\r\n            }\r\n          }\r\n        }\r\n      });\r\n\r\n    finalizeAnnotation({ minX, maxX });\r\n  };\r\n\r\n  const removeOverlapsFromAnnotation = () => {\r\n    let { minX, maxX } = getAnnotationTransformed(\r\n      data.currentAnnotation.minX,\r\n      data.currentAnnotation.maxX\r\n    );\r\n    const annos = getPixelAnnotations();\r\n    for (const anno of annos.sort((a, b) => a.minX - b.minX)) {\r\n      let tempAnno = getAnnotationTransformed(anno.minX, anno.maxX);\r\n      let minAnno = Math.min(tempAnno.minX, tempAnno.maxX);\r\n      let maxAnno = Math.max(tempAnno.minX, tempAnno.maxX);\r\n      if (isOverlapping({ minX, maxX }, tempAnno)) {\r\n        if (isInside(tempAnno, { minX, maxX })) {\r\n          if (minAnno - minX > 0) {\r\n            const newAnnotation = { minX, maxX: minAnno };\r\n            finalizeAnnotation(newAnnotation);\r\n          }\r\n          minX = maxAnno;\r\n        } else {\r\n          if (maxX > minAnno && maxX < maxAnno) {\r\n            maxX = minAnno;\r\n          }\r\n          if (minX < maxAnno && minX > minAnno) {\r\n            minX = maxAnno;\r\n          }\r\n        }\r\n      }\r\n    }\r\n    if (maxX - minX > 0) {\r\n      finalizeAnnotation({ minX, maxX });\r\n    }\r\n  };\r\n\r\n  /**\r\n   * Deletes existing annotations in selected area.\r\n   * @param {object} deletionArea Object containing minX and maxX of area to delete.\r\n   */\r\n  const deleteAnnotation = (deletionArea) => {\r\n    deletionArea = getAnnotationTransformed(\r\n      deletionArea.minX,\r\n      deletionArea.maxX\r\n    );\r\n    let existingAnnotations = annotations;\r\n    const newAnnotations = [];\r\n    for (let existingAnno of existingAnnotations.filter(\r\n      (a) => a.modificationStatus !== ModificationStatus.Deleted\r\n    )) {\r\n      let anno = convertToPixelAnnotation(existingAnno);\r\n      anno = getAnnotationTransformed(anno.minX, anno.maxX);\r\n      if (!isOverlapping(deletionArea, anno)) continue;\r\n\r\n      // Deleting area inside of an annotation.\r\n      if (isInside(deletionArea, anno)) {\r\n        newAnnotations.push({\r\n          minX: anno.minX,\r\n          maxX: deletionArea.minX,\r\n        });\r\n        newAnnotations.push({\r\n          minX: deletionArea.maxX,\r\n          maxX: anno.maxX,\r\n        });\r\n      }\r\n      // Deleting an overlapping portion of an annotation.\r\n      else if (!isInside(anno, deletionArea)) {\r\n        if (isValueInside(anno.minX, deletionArea)) {\r\n          anno.minX = deletionArea.maxX;\r\n        } else {\r\n          anno.maxX = deletionArea.minX;\r\n        }\r\n        newAnnotations.push(anno);\r\n      }\r\n      // Delete modified existing annotation\r\n      if (existingAnno.modificationStatus === ModificationStatus.Saved) {\r\n        // Mark saved annotation as to delete.\r\n        existingAnno.modificationStatus = ModificationStatus.Deleted;\r\n\r\n        // Mark annotations as changed\r\n        reportSaveStatus(false);\r\n      } else {\r\n        // Remove annotation not yet saved to database\r\n        existingAnnotations.splice(\r\n          existingAnnotations.indexOf(existingAnno),\r\n          1\r\n        );\r\n      }\r\n    }\r\n\r\n    // Save all modified annotations\r\n    for (const newAnno of newAnnotations) {\r\n      finalizeAnnotation(newAnno, existingAnnotations);\r\n    }\r\n\r\n    // Only deleted annotations ->  Save those to delete\r\n    if (newAnnotations.length === 0) setAnnotations(existingAnnotations);\r\n  };\r\n\r\n  /**\r\n   * Decides on how to proceed after finishing an annotation drawing.\r\n   */\r\n  const endAnnotation = () => {\r\n    switch (data.actionState) {\r\n      case \"drawing\":\r\n      case \"grab\":\r\n      case \"grabbing\":\r\n        if (removeOverlaps) {\r\n          removeOverlapsFromAnnotation();\r\n        } else {\r\n          mergeOverlappingAnnotations();\r\n        }\r\n        break;\r\n\r\n      case \"deleting\":\r\n        deleteAnnotation(data.currentAnnotation);\r\n        break;\r\n\r\n      default:\r\n        break;\r\n    }\r\n\r\n    data.currentAnnotation = null;\r\n    data.actionState = null;\r\n    updateCanvas();\r\n  };\r\n  //#endregion\r\n\r\n  //#region User Interactions\r\n  const onMouseDown = (e) => {\r\n    // Do nothing with invisible annotations\r\n    if (!structure.annotationsAreVisible) return;\r\n\r\n    AudioViewer.setSelectedStructure(structure);\r\n\r\n    setIsDrawing(true);\r\n    let newActionState = null;\r\n    if (e.buttons === 1) {\r\n      newActionState = \"drawing\";\r\n    } else if (e.buttons === 2) {\r\n      newActionState = \"deleting\";\r\n      if (cursor !== \"inherit\") {\r\n        setCursor(\"inherit\");\r\n      }\r\n    }\r\n    if (newActionState !== null) {\r\n      data.actionState = newActionState;\r\n    }\r\n    const x = getX(e);\r\n    initializeAnnotation(x, newActionState);\r\n    e.preventDefault();\r\n    e.stopPropagation();\r\n  };\r\n\r\n  /**\r\n   * Changes the look of the cursor depending on its proximity to an annotation.\r\n   * @param {number} x Horizontal position of cursor.\r\n   */\r\n  const updateCursor = (x) => {\r\n    let updatedCursor = \"inherit\";\r\n    for (const audioAnno of annotations.filter(\r\n      (anno) => anno.modificationStatus !== ModificationStatus.Deleted\r\n    )) {\r\n      const anno = convertToPixelAnnotation(audioAnno);\r\n      if (isValueNearby(anno.minX, x) || isValueNearby(anno.maxX, x)) {\r\n        updatedCursor = \"w-resize\";\r\n        break;\r\n      } else if (isValueInside(x, anno)) {\r\n        updatedCursor = \"grab\";\r\n        break;\r\n      }\r\n    }\r\n    if (cursor !== updatedCursor) {\r\n      setCursor(updatedCursor);\r\n    }\r\n  };\r\n\r\n  /**\r\n   * Updates cursor display, begins adjusts selected annotation, and updates the canvas dsiplay.\r\n   * @param {event} e Mouse move event.\r\n   */\r\n  const onMouseMove = (e) => {\r\n    // Do nothing with invisible annotations\r\n    if (!structure.annotationsAreVisible) {\r\n      setCursor(\"inherit\");\r\n      return;\r\n    }\r\n\r\n    const x = getX(e);\r\n    setMouseX(x);\r\n    if (data.actionState === null) {\r\n      updateCursor(x);\r\n    }\r\n    if (!data.actionState) return;\r\n\r\n    if (cursor === \"grabbing\" || cursor === \"grab\") {\r\n      const delta = e.movementX;\r\n      updateAnnotation(\r\n        data.currentAnnotation.minX + delta,\r\n        data.currentAnnotation.maxX + delta\r\n      );\r\n    } else {\r\n      updateAnnotation(data.currentAnnotation.x1, x);\r\n    }\r\n    updateCanvas();\r\n    e.preventDefault();\r\n  };\r\n\r\n  /**\r\n   * Ends the annotation-drawing process.\r\n   * @param {event} e Mouse event when letting go of mouse.\r\n   */\r\n  const onMouseUp = (e) => {\r\n    // Do nothing with invisible annotations\r\n    if (!structure.annotationsAreVisible) return;\r\n\r\n    setIsDrawing(false);\r\n    endAnnotation();\r\n    e.preventDefault();\r\n    e.stopPropagation();\r\n  };\r\n  //#endregion\r\n\r\n  /**\r\n   * Convert all finished annotations to pixel borders.\r\n   * @returns {array} All annotations as annotations defined by pixels boundries.\r\n   */\r\n  const updateCanvas = () => {\r\n    // Ensure the canvas is present before updating.\r\n    if (!canvas.current) return;\r\n\r\n    const ctx = canvas.current.getContext(\"2d\");\r\n    const w = ctx.canvas.width;\r\n    const h = ctx.canvas.height;\r\n    ctx.clearRect(0, 0, w, h);\r\n    ctx.beginPath();\r\n    ctx.strokeStyle = \"#000\";\r\n    ctx.fillStyle = structure.color;\r\n    for (let anno of getPixelAnnotations()) {\r\n      ctx.rect(anno.minX, 3, anno.maxX - anno.minX, h - 3);\r\n      ctx.fill();\r\n      ctx.stroke();\r\n    }\r\n    ctx.closePath();\r\n    if (data.currentAnnotation) {\r\n      ctx.beginPath();\r\n      if (data.actionState === \"drawing\") {\r\n        ctx.fillStyle = \"transparent\";\r\n      } else if (data.actionState === \"deleting\") {\r\n        ctx.fillStyle = \"rgba(0,0,0,0.8)\";\r\n      }\r\n      ctx.rect(\r\n        data.currentAnnotation.minX,\r\n        3,\r\n        data.currentAnnotation.maxX - data.currentAnnotation.minX,\r\n        h - 3\r\n      );\r\n      ctx.closePath();\r\n      ctx.fill();\r\n      ctx.stroke();\r\n    }\r\n  };\r\n\r\n  if (!isVisible) return <div />;\r\n  return (\r\n    <div\r\n      style={{\r\n        ...other.style,\r\n        ...styles.root,\r\n        background:\r\n          AudioViewer.selectedStructure == structure ? \"white\" : \"darkgrey\",\r\n      }}\r\n      onMouseDown={() => AudioViewer.setSelectedStructure(structure)}\r\n    >\r\n      <Tooltip title={structure.label} disableInteractive placement=\"right\">\r\n        <div\r\n          style={{\r\n            ...styles.label,\r\n            width: Math.max(0, AudioFile.labelWidth),\r\n            color:\r\n              AudioViewer.selectedStructure == structure ? \"black\" : \"grey\",\r\n          }}\r\n        >\r\n          {structure.label}\r\n        </div>\r\n      </Tooltip>\r\n      <div ref={canvasContainer} style={styles.canvasContainer}>\r\n        {canvasWidth && (\r\n          <canvas\r\n            style={{ cursor: cursor }}\r\n            width={getCanvasWidth()}\r\n            ref={canvas}\r\n            onMouseDown={onMouseDown}\r\n            onMouseMove={onMouseMove}\r\n            onMouseUp={onMouseUp}\r\n            onContextMenu={(e) => {\r\n              e.preventDefault();\r\n            }}\r\n          />\r\n        )}\r\n      </div>\r\n    </div>\r\n  );\r\n}\r\n\r\nAudioAnnotationItem.propTypes = {\r\n  file: PropTypes.object.isRequired,\r\n  structure: PropTypes.instanceOf(Structure).isRequired,\r\n  saveNow: PropTypes.bool.isRequired,\r\n  reportSaveStatus: PropTypes.func.isRequired,\r\n  removeOverlaps: PropTypes.bool,\r\n  mouseX: PropTypes.number.isRequired,\r\n  setMouseX: PropTypes.func.isRequired,\r\n  isVisible: PropTypes.bool,\r\n  visibleTimeRange: PropTypes.arrayOf(PropTypes.number),\r\n};\r\n","// Framework imports\r\nimport React, { useContext, useEffect, useRef, useState } from \"react\";\r\nimport { PropTypes } from \"prop-types\";\r\n\r\n// HSA imports\r\nimport AudioAnnotationItem from \"./AudioAnnotationItem\";\r\nimport { AudioViewerContext } from \"../AudioViewer\";\r\nimport { AudioFileContext } from \"./AudioFileContainer\";\r\nimport { parentStructures } from \"../../common/components/Structure\";\r\nimport { isInt } from \"../../common/utils/Utils\";\r\n\r\n/**\r\n * Collected (reusable) styles for page elements.\r\n */\r\nconst styles = {\r\n  root: {\r\n    width: \"100%\",\r\n    background: \"#fff\",\r\n  },\r\n  cursorContainer: {\r\n    position: \"absolute\",\r\n    display: \"grid\",\r\n    top: 0,\r\n    height: \"100%\",\r\n    width: \"100%\",\r\n    pointerEvents: \"none\",\r\n  },\r\n  cursor: {\r\n    zIndex: 10,\r\n    position: \"relative\",\r\n    top: 0,\r\n    height: \"100%\",\r\n    width: 0,\r\n\r\n    borderLeft: \"2px solid black\",\r\n  },\r\n};\r\n\r\n/**\r\n * Displays audio annotations of a given audio file / stream.\r\n * Allows the creation, modification, and deletion of annotations.\r\n * @param {object} file The file being annotated.\r\n * @returns React node for AudioAnnotations\r\n */\r\nexport default function AudioAnnotations(props) {\r\n  const { file, labelWidth, timestampPosition, visibleTimeRange, ...other } =\r\n    props;\r\n\r\n  const AudioViewer = useContext(AudioViewerContext);\r\n  const AudioFile = useContext(AudioFileContext);\r\n  const structuresRef = useRef(AudioViewer.structures);\r\n  const selectedStructureRef = useRef(AudioViewer.selectedStructure);\r\n  const [savedStructures, setSavedStructures] = useState({});\r\n  const [mouseX, setMouseX] = useState(0);\r\n  const disableKeyboardShortcutsRef = useRef(\r\n    AudioFile.disableKeyboardShortcuts\r\n  );\r\n\r\n  // Initial load and unload\r\n  useEffect(() => {\r\n    window.addEventListener(\"keydown\", handleKeyPress);\r\n    return () => window.removeEventListener(\"keydown\", handleKeyPress);\r\n  }, []);\r\n\r\n  useEffect(() => {\r\n    disableKeyboardShortcutsRef.current = AudioFile.disableKeyboardShortcuts;\r\n  }, [AudioFile.disableKeyboardShortcuts]);\r\n\r\n  // Update selectedStructure for handler added on start\r\n  useEffect(() => {\r\n    selectedStructureRef.current = AudioViewer.selectedStructure;\r\n  }, [AudioViewer.selectedStructure]);\r\n\r\n  // Update structures for handler added on start\r\n  useEffect(() => {\r\n    structuresRef.current = AudioViewer.structures;\r\n  }, [AudioViewer.structures]);\r\n\r\n  //Update structure save status array on change of structures\r\n  useEffect(() => {\r\n    setSavedStructures((prevSaveStatus) => {\r\n      let newSaveStatus = prevSaveStatus;\r\n      AudioViewer.structures.forEach((s) => {\r\n        // Structures begin as saved\r\n        newSaveStatus[s.id] =\r\n          s.id in newSaveStatus ? newSaveStatus[s.id] : true;\r\n      });\r\n      return newSaveStatus;\r\n    });\r\n  }, [AudioViewer.structures]);\r\n\r\n  useEffect(() => {}, [visibleTimeRange]);\r\n\r\n  /**\r\n   * Decide what happens on any keypress event.\r\n   * @param {KeyboardEvent} e Keypress event.\r\n   */\r\n  const handleKeyPress = (e) => {\r\n    if (disableKeyboardShortcutsRef.current) return;\r\n    switch (e.code) {\r\n      case \"ArrowUp\":\r\n        // Select structure above currently selected\r\n        switchStructure(-1);\r\n        break;\r\n      case \"ArrowDown\":\r\n        // Select structure below currently selected\r\n        switchStructure(1);\r\n        break;\r\n      default:\r\n        return;\r\n    }\r\n  };\r\n\r\n  /**\r\n   * Sets another structure as the selected one, relative to the currently selected.\r\n   * Loops around at end/beginning.\r\n   * @param {int} direction The direction to look for the next structure, relative to the currently selected.\r\n   */\r\n  const switchStructure = (direction) => {\r\n    if (!isInt(direction)) {\r\n      throw TypeError(\r\n        `direction must be of type int, received ${typeof direction}: ${direction}`\r\n      );\r\n    }\r\n    if (selectedStructureRef.current === null) {\r\n      if (!structuresRef.current[0]) {\r\n        window.showWarningSnackbar(\"No structures present.\");\r\n        return;\r\n      }\r\n\r\n      AudioViewer.setSelectedStructure(structuresRef.current[0]);\r\n      return;\r\n    }\r\n\r\n    const currentlySelectedIndex = structuresRef.current.findIndex(\r\n      (s) => selectedStructureRef.current.id === s.id\r\n    );\r\n\r\n    // Loop around at end/beginning.\r\n    const newlySelectedStructure =\r\n      structuresRef.current[\r\n        (structuresRef.current.length +\r\n          ((currentlySelectedIndex + direction) %\r\n            structuresRef.current.length)) %\r\n          structuresRef.current.length\r\n      ];\r\n    AudioViewer.setSelectedStructure(newlySelectedStructure);\r\n  };\r\n\r\n  /**\r\n   * Updates the status of structures when modifying and/or saving.\r\n   * @param {int} structureId Structure id of status to update.\r\n   * @param {bool} structureSaveStatus New save status. true = saved, false = not saved.\r\n   */\r\n  const reportStructureSaveStatus = (structureId, structureSaveStatus) => {\r\n    let tmpStatus = savedStructures;\r\n    tmpStatus[structureId] = structureSaveStatus;\r\n    setSavedStructures(tmpStatus);\r\n\r\n    // Check if any structure is unsaved\r\n    const allStructuresSaved = !Object.values(tmpStatus).some((val) => !val);\r\n\r\n    // Mark file as not fully saved\r\n    AudioViewer.reportFileSaveStatus(file.id, allStructuresSaved);\r\n  };\r\n\r\n  return (\r\n    <div style={{ ...other.style, ...styles.root, position: \"relative\" }}>\r\n      {AudioFile.audio !== null &&\r\n        AudioViewer.structures.map((structure, idx) => {\r\n          // Structures are visible when all their parents are unfolded.\r\n          // Top-level structures are always visble.\r\n          const parents = parentStructures(structure, AudioViewer.structures);\r\n          parents.pop(); // remove structure itself\r\n          const isVisible =\r\n            structure.parentId === null || parents.every((p) => p.isUnfolded);\r\n\r\n          return (\r\n            <AudioAnnotationItem\r\n              key={idx}\r\n              file={file}\r\n              structure={structure}\r\n              setMouseX={setMouseX}\r\n              mouseX={mouseX}\r\n              saveNow={\r\n                AudioViewer.saveNow &&\r\n                (savedStructures ? !savedStructures[structure.id] : false)\r\n              }\r\n              reportSaveStatus={(status) =>\r\n                reportStructureSaveStatus(structure.id, status)\r\n              }\r\n              removeOverlaps={AudioViewer.excludeToolActive}\r\n              isVisible={isVisible}\r\n              visibleTimeRange={visibleTimeRange}\r\n            />\r\n          );\r\n        })}\r\n\r\n      {/* Local Cursor over all audio file elements */}\r\n      <div\r\n        style={{\r\n          ...styles.cursorContainer,\r\n          gridTemplateColumns: `auto 1fr`,\r\n        }}\r\n      >\r\n        <div style={{ width: labelWidth - 1 }} />\r\n        <div\r\n          style={{\r\n            ...styles.cursor,\r\n            left: `${timestampPosition * 100}%`,\r\n          }}\r\n        />\r\n      </div>\r\n    </div>\r\n  );\r\n}\r\n\r\nAudioAnnotations.propTypes = {\r\n  file: PropTypes.object.isRequired,\r\n  disableKeyboardShortcuts: PropTypes.bool,\r\n  labelWidth: PropTypes.number,\r\n  hoverBarVisible: PropTypes.bool,\r\n  hoverPositionX: PropTypes.number,\r\n  timestampPosition: PropTypes.number,\r\n  visibleTimeRange: PropTypes.array,\r\n};\r\n","// Framework Imports\r\nimport React, { useRef, useCallback, useEffect, useState } from \"react\";\r\nimport { PropTypes } from \"prop-types\";\r\n\r\n// External components\r\nimport Slider from \"@mui/material/Slider\";\r\n\r\n// HSA Imports\r\nimport { roundToDecimal } from \"../utils/Utils\";\r\n\r\n/**\r\n * A slider controllable by mousewheel when hovering over it.\r\n * @param {number} defaultValue Optional. The starting position of the slider. Defaults to 0.\r\n * @param {number} min Optional. The minimal accepted value of the slider. Defaults to 0.\r\n * @param {number} max Optional. The maximum accepted value of the slider. Defaults to 100.\r\n * @param {number} step Optional. The step size of a single step. Defaults to 1.\r\n * @param {function} onChange The function to be executed on value change. Receives {number} newValue.\r\n * @param {function} onChangeCommitted The function to be executed on final value change. Receives {number} newValue.\r\n * @returns React node.\r\n */\r\nexport default function WheelControllableSlider(props) {\r\n  const {\r\n    defaultValue = 0,\r\n    min = 0,\r\n    max = 100,\r\n    step = 1,\r\n    onChange = () => {},\r\n    onChangeCommitted = () => {},\r\n    ...other\r\n  } = props;\r\n  const sliderRef = useRef();\r\n  const [sliderPosition, setSliderPosition] = useState(defaultValue);\r\n  const sliderPostionRef = useRef(defaultValue);\r\n\r\n  useEffect(() => {\r\n    onChange(sliderPosition);\r\n  }, [sliderPosition]);\r\n\r\n  /**\r\n   * Activate silder change on scroll\r\n   */\r\n  const sliderScrollOn = () => {\r\n    sliderRef.current.addEventListener(\"wheel\", adjustSliderByScrolling);\r\n  };\r\n\r\n  /**\r\n   * Deactivate slider change on scroll\r\n   */\r\n  const sliderScrollOff = () => {\r\n    sliderRef.current.removeEventListener(\"wheel\", adjustSliderByScrolling);\r\n  };\r\n\r\n  /**\r\n   * Allow slider adjustment via mousewheel.\r\n   * @param {event} e Scrollevent.\r\n   */\r\n  const adjustSliderByScrolling = useCallback((e) => {\r\n    e.preventDefault();\r\n    // Round to value between 0 and 100, with a precision of 0.01\r\n    // Use increments as passed along\r\n    const newVal = roundToDecimal(\r\n      Math.min(\r\n        max,\r\n        Math.max(\r\n          min,\r\n          -(\r\n            (Math.sign(e.deltaX) + Math.sign(e.deltaY) + Math.sign(e.deltaZ)) *\r\n            step\r\n          ) + sliderPostionRef.current\r\n        )\r\n      ),\r\n      2\r\n    );\r\n    sliderPostionRef.current = newVal;\r\n    setSliderPosition(newVal);\r\n  }, []);\r\n\r\n  return (\r\n    <Slider\r\n      {...other}\r\n      min={min}\r\n      max={max}\r\n      step={step}\r\n      onMouseEnter={sliderScrollOn}\r\n      onMouseLeave={sliderScrollOff}     \r\n      onChange={(_, value) => {\r\n        sliderPostionRef.current = value;\r\n        setSliderPosition(value);\r\n        onChange(value);\r\n      }}\r\n      onChangeCommitted={(_, value) => {\r\n        sliderPostionRef.current = value;\r\n        setSliderPosition(value);\r\n        onChangeCommitted(value);\r\n      }}\r\n      value={sliderPosition}\r\n      ref={sliderRef}\r\n    />\r\n  );\r\n}\r\n\r\nWheelControllableSlider.propTypes = {\r\n  min: PropTypes.number,\r\n  max: PropTypes.number,\r\n  defaultValue: PropTypes.number,\r\n  step: PropTypes.number,\r\n  onChange: PropTypes.func,\r\n  onChangeCommitted: PropTypes.func,\r\n};\r\n","// Framework imports\r\nimport React, { useState, useRef, useEffect, useContext } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\n// External packages\r\nimport Grid from \"@mui/material/Grid\";\r\nimport IconButton from \"@mui/material/IconButton\";\r\nimport PauseIcon from \"@mui/icons-material/Pause\";\r\nimport PlayArrowIcon from \"@mui/icons-material/PlayArrow\";\r\nimport SpeedIcon from \"@mui/icons-material/Speed\";\r\nimport Stack from \"@mui/material/Stack\";\r\nimport StopIcon from \"@mui/icons-material/Stop\";\r\nimport VolumeDownIcon from \"@mui/icons-material/VolumeDown\";\r\nimport VolumeUpIcon from \"@mui/icons-material/VolumeUp\";\r\nimport VolumeOffIcon from \"@mui/icons-material/VolumeOff\";\r\nimport Tooltip from \"@mui/material/Tooltip\";\r\n\r\n// HSA Imports\r\nimport WheelControllableSlider from \"../../common/components/WheelControllableSlider\";\r\nimport { AudioFileContext } from \"./AudioFileContainer\";\r\n\r\n/**\r\n * Collected (reusable) styles for page elements.\r\n */\r\nconst styles = {\r\n  root: {\r\n    width: \"100%\",\r\n    borderBottom: \"1px solid #EBEBEB\",\r\n  },\r\n  sliders: {\r\n    minWidth: 250,\r\n  },\r\n};\r\n\r\n/**\r\n * Audio Controls for a sound.\r\n * @param {Howl} audio Instance of audio referenced by scrollbar.\r\n * @returns React node for AudioControlBar.\r\n */\r\nexport default function AudioControlBar(props) {\r\n  const { getWaveSurfer } = props;\r\n  const waveS = getWaveSurfer();\r\n  if (!waveS) return null;\r\n\r\n  const AudioFile = useContext(AudioFileContext);\r\n  const disableKeyboardShortcutsRef = useRef(\r\n    AudioFile.disableKeyboardShortcuts\r\n  );\r\n\r\n  // Volume controls\r\n  // const [volume, setVolume] = useState(audio.volume() * 100);\r\n  const [savedVolume, setSavedVolume] = useState(waveS.media.volume * 100);\r\n\r\n  useEffect(() => {\r\n    // Listen for keyboard controls\r\n    window.addEventListener(\"keydown\", handleKeyPress);\r\n    return () => window.removeEventListener(\"keydown\", handleKeyPress);\r\n  }, []);\r\n\r\n  useEffect(() => {\r\n    disableKeyboardShortcutsRef.current = AudioFile.disableKeyboardShortcuts;\r\n  }, [AudioFile.disableKeyboardShortcuts]);\r\n\r\n  /**\r\n   * Decide what happens on any keypress event.\r\n   * @param {KeyboardEvent} e Keypress event.\r\n   */\r\n  const handleKeyPress = (e) => {\r\n    if (disableKeyboardShortcutsRef.current) return;\r\n    if (!waveS) return;\r\n    switch (e.code) {\r\n      case \"Space\":\r\n        // Play/Pause Audio\r\n        waveS.playPause();\r\n        e.preventDefault();\r\n        break;\r\n      case \"ArrowLeft\":\r\n        // Jump back\r\n        jump(-1);\r\n        break;\r\n      case \"ArrowRight\":\r\n        // Jump ahead\r\n        jump(1);\r\n        break;\r\n    }\r\n  };\r\n\r\n  /**\r\n   * Jump short distances in the audiofile. The distance depends on the length of the audiofile:\r\n   * Until threshold, jump 5% of song, then jump fixed second value.\r\n   * @param {number} direction The direction to jump in. Will be multiplied with the calculated interval.\r\n   */\r\n  const jump = (direction) => {\r\n    if (typeof direction !== \"number\") {\r\n      throw TypeError(\r\n        `direction must be of type number, received ${typeof direction}: ${direction}`\r\n      );\r\n    }\r\n\r\n    const PERCENTAGE_UNTIL_CUTOFF = 0.05;\r\n    const FIXED_DISTANCE_SEC = 5;\r\n    const DURATION_THRESHOLD_SEC =\r\n      (1 / PERCENTAGE_UNTIL_CUTOFF) * FIXED_DISTANCE_SEC;\r\n\r\n    const duration = waveS.getDuration();\r\n    // Until threshold, jump PERCENTAGE_UNTIL_CUTOFF of song, then jump fixed second value.\r\n    const interval =\r\n      duration <= DURATION_THRESHOLD_SEC\r\n        ? duration * PERCENTAGE_UNTIL_CUTOFF\r\n        : FIXED_DISTANCE_SEC;\r\n\r\n    waveS.skip(direction * interval);\r\n  };\r\n\r\n\r\n  return (\r\n    <Grid\r\n      container\r\n      sx={{\r\n        ...styles.root,\r\n      }}\r\n    >\r\n      {/* Buttons */}\r\n      {waveS && !waveS.media.paused ? (\r\n        <Tooltip title=\"Pause\" disableInteractive>\r\n          <IconButton onClick={() => waveS.pause()}>\r\n            <PauseIcon sx={{ color: \"secondary.main\" }} />\r\n          </IconButton>\r\n        </Tooltip>\r\n      ) : (\r\n        <Tooltip title=\"Play\" disableInteractive>\r\n          <IconButton onClick={() => waveS.play()}>\r\n            <PlayArrowIcon sx={{ color: \"secondary.main\" }} />\r\n          </IconButton>\r\n        </Tooltip>\r\n      )}\r\n      <Tooltip title=\"Reset\" disableInteractive>\r\n        <IconButton\r\n          onClick={() => {\r\n            if (waveS) {\r\n              waveS.setTime(0);\r\n              waveS.pause();\r\n            }\r\n          }}\r\n        >\r\n          <StopIcon sx={{ color: \"secondary.main\" }} />\r\n        </IconButton>\r\n      </Tooltip>\r\n\r\n      <Stack\r\n        spacing={2}\r\n        direction=\"row\"\r\n        sx={styles.sliders}\r\n        alignItems=\"center\"\r\n      >\r\n        {/* Volume Control */}\r\n        {waveS.media.volume === 0 ? (\r\n          <Tooltip title=\"Unmute\" disableInteractive>\r\n            <IconButton\r\n              onClick={() => {\r\n                // audio.volume(0);\r\n                waveS.setVolume(savedVolume);\r\n              }}\r\n            >\r\n              <VolumeOffIcon sx={{ color: \"secondary.main\" }} />\r\n            </IconButton>\r\n          </Tooltip>\r\n        ) : (\r\n          <Tooltip title=\"Mute\" disableInteractive>\r\n            <IconButton\r\n              onClick={() => {\r\n                // audio.volume(savedVolume / 100);\r\n                setSavedVolume(waveS.media.volume);\r\n                waveS.setVolume(0);\r\n              }}\r\n            >\r\n              <VolumeDownIcon sx={{ color: \"secondary.main\" }} />\r\n            </IconButton>\r\n          </Tooltip>\r\n        )}\r\n        <WheelControllableSlider\r\n          aria-label=\"Volume\"\r\n          defaultValue={waveS.media.volume * 100}\r\n          min={0}\r\n          max={100}\r\n          size=\"small\"\r\n          valueLabelDisplay=\"auto\"\r\n          onChange={(value) => {\r\n            waveS.setVolume(value / 100);            \r\n          }}\r\n        />\r\n        <VolumeUpIcon sx={{ color: \"secondary.main\" }} />\r\n      </Stack>\r\n      <Stack\r\n        spacing={2}\r\n        direction=\"row\"\r\n        sx={styles.sliders}\r\n        alignItems=\"center\"\r\n      >\r\n        {/* Speed Control */}\r\n        <Tooltip title=\"Playback Speed\" disableInteractive>\r\n          <SpeedIcon sx={{ color: \"secondary.main\" , marginLeft: \"20px\"}} />\r\n        </Tooltip>\r\n        <WheelControllableSlider\r\n          aria-label=\"Playback Speed\"\r\n          min={0.5}\r\n          max={4}\r\n          step={0.1}\r\n          defaultValue={waveS.media.playbackRate}\r\n          size=\"small\"\r\n          valueLabelDisplay=\"auto\"\r\n          onChange={(value) => {\r\n            waveS.setPlaybackRate(value);\r\n          }}\r\n        />\r\n      </Stack>\r\n    </Grid>\r\n  );\r\n}\r\n\r\nAudioControlBar.propTypes = {\r\n  disableKeyboardShortcuts: PropTypes.bool,\r\n  getWaveSurfer: PropTypes.func,\r\n};\r\n","// Framework imports\r\nimport React, { useState, useEffect, useContext, useRef } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport { withStyles, createStyles } from \"@mui/styles\";\r\n\r\n// External packages\r\nimport WaveSurfer from \"wavesurfer.js\";\r\nimport SpectrogramPlugin from \"wavesurfer.js/dist/plugins/spectrogram\";\r\n// import TimelinePlugin from \"wavesurfer.js/dist/plugins/timeline\";\r\n\r\n// HSA Imports\r\nimport { AudioFileContext } from \"./AudioFileContainer\";\r\n\r\n// mui imports\r\nimport { Button, Tooltip } from \"@mui/material\";\r\n\r\n// icon imports\r\nimport ExpandLessIcon from \"@mui/icons-material/ExpandLess\";\r\nimport ExpandMoreIcon from \"@mui/icons-material/ExpandMore\";\r\n\r\n/**\r\n * Collected (reusable) styles for page elements.\r\n */\r\nconst styles = createStyles({\r\n  root: {\r\n    width: \"100%\",\r\n    borderBottom: \"1px solid  #EBEBEB\",\r\n  },\r\n  toggleButton: {\r\n    width: \"100%\",\r\n  },\r\n  waveVisible: {\r\n    \"& spectrogram\": {\r\n      height: \"36px !important\",\r\n    },\r\n  },\r\n  spectrogramVisible: {\r\n    background: \"green\",\r\n    \"& .wrapper:first-child\": {\r\n      height: \"36px !important\",\r\n    },\r\n  },\r\n});\r\n\r\n/**\r\n * Displays the magitude spectrogram of an audio file / stream.\r\n * @returns React node for MagnitudeSpectrogram\r\n */\r\nfunction MagnitudeSpectrogram(props) {\r\n  const { classes, leftWidth, setWaveSurfer, setVisibleTimeRange } = props;\r\n  const AudioFile = useContext(AudioFileContext);\r\n  const wavesurfer = useRef();\r\n  const waveformRef = useRef();\r\n  const [waveVisible, setWaveVisible] = useState(true);\r\n  const [spectrogramVisible, setspectrogramVisible] = useState(true);\r\n  const zoomRef = useRef(1);\r\n  const [minZoom, setMinZoom] = useState(null);\r\n\r\n  useEffect(() => {\r\n    initWS();\r\n    // add event listener for mouse wheel movement\r\n    window.addEventListener(\"wheel\", zoom);\r\n    return () => {\r\n      // remove event listener for mouse wheel movement\r\n      window.removeEventListener(\"wheel\", zoom);\r\n    };\r\n  }, []);\r\n\r\n  useEffect(() => {\r\n    if (wavesurfer.current) {\r\n      wavesurfer.current.setOptions({\r\n        height: waveVisible ? 128 : 36,\r\n      });\r\n    }\r\n  }, [waveVisible]);\r\n\r\n  useEffect(() => {\r\n    if (wavesurfer.current) {\r\n      const plugins = wavesurfer.current.plugins;\r\n      let spectrogramIdx = -1;\r\n      for (let i = 0; i < plugins.length; i++) {\r\n        if (plugins[i] instanceof SpectrogramPlugin) {\r\n          spectrogramIdx = i;\r\n          break;\r\n        }\r\n      }\r\n\r\n      if (spectrogramVisible && spectrogramIdx === -1) {\r\n        addSpectrogram();\r\n        return;\r\n      }\r\n      if (!spectrogramVisible && spectrogramIdx > -1) {\r\n        plugins[spectrogramIdx].destroy();\r\n        plugins.splice(spectrogramIdx, 1);\r\n        return;\r\n      }\r\n    }\r\n  }, [spectrogramVisible]);\r\n\r\n  useEffect(() => {\r\n    if (waveVisible === false) {\r\n      wavesurfer.current.height = spectrogramVisible ? 256 : 36;\r\n    }\r\n  }, [spectrogramVisible, waveVisible]);\r\n\r\n  const zoom = (e) => {\r\n    if (!wavesurfer.current) return;\r\n    let zoomDelta = 0.1 * zoomRef.current;\r\n    if (e.deltaY > 0) {\r\n      zoomDelta = -zoomDelta;\r\n    }\r\n    const newZoom = zoomRef.current + zoomDelta;\r\n    zoomRef.current = Math.max(getMinZoom(), newZoom);\r\n    wavesurfer.current.zoom(newZoom);\r\n  };\r\n\r\n  const getMinZoom = () => {\r\n    if (minZoom) return minZoom;\r\n    if (!wavesurfer.current) return 1;\r\n    const audioDuration = wavesurfer.current.getDuration();\r\n    const waveformWidth = wavesurfer.current.renderer.container.clientWidth;\r\n    const zoomToFit = waveformWidth / audioDuration;\r\n    setMinZoom(zoomToFit);\r\n    return zoomToFit;\r\n  };\r\n\r\n  const addSpectrogram = () => {\r\n    if (wavesurfer.current && wavesurfer.current.plugins.length === 0) {\r\n      wavesurfer.current.registerPlugin(\r\n        SpectrogramPlugin.create({\r\n          showTime: true,\r\n          labels: true,\r\n        })\r\n      );\r\n      return;\r\n    }\r\n  };\r\n\r\n  const initWS = () => {\r\n    const ws = WaveSurfer.create({\r\n      container: waveformRef.current,\r\n      autoCenter: false,\r\n      autoScroll: true,\r\n      labels: true,\r\n      cursorWidth: 2,\r\n    });\r\n    ws.setVolume(0.1);\r\n\r\n    ws.load(AudioFile.audioFileSrc);\r\n    ws.on(\"timeupdate\", (currentTime) => {\r\n      AudioFile.updateTimeStampPosition(currentTime);\r\n    });\r\n    ws.on(\"scroll\", (visibleStartTime, visibleEndTime) => {\r\n      AudioFile.audio.visibleTimeRange = [visibleStartTime, visibleEndTime];\r\n\r\n      setVisibleTimeRange([visibleStartTime, visibleEndTime]);\r\n    });\r\n    ws.on(\"zoom\", () => {\r\n      const wrapper = ws.getWrapper();\r\n      const parent = wrapper.parentElement;\r\n\r\n      const parentWidth = parent.clientWidth;\r\n      const contentWidth = wrapper.clientWidth;\r\n      const duration = AudioFile.audio.duration();\r\n      const currentTime = AudioFile.audio.seek();\r\n      const visibleDuration = duration * (parentWidth / contentWidth);\r\n      const widthToDurationFactor = parentWidth / visibleDuration;\r\n      const visibleLeft = currentTime - visibleDuration / 2;\r\n      const scrollLeft = Math.max(0, visibleLeft * widthToDurationFactor);\r\n      parent.scrollTo(scrollLeft, 0);\r\n\r\n      if (scrollLeft === 0) {\r\n        AudioFile.audio.visibleTimeRange = [0, visibleDuration];\r\n        setVisibleTimeRange([0, visibleDuration]);\r\n      }\r\n    });\r\n    wavesurfer.current = ws;\r\n    addSpectrogram();\r\n    setWaveSurfer(ws);\r\n  };\r\n\r\n  const onToggleWave = () => {\r\n    setWaveVisible(!waveVisible);\r\n  };\r\n\r\n  const onToggleSpectogram = () => {\r\n    setspectrogramVisible(!spectrogramVisible);\r\n  };\r\n\r\n  return (\r\n    <div\r\n      style={{\r\n        display: \"grid\",\r\n        gridTemplateColumns: \"auto 1fr\",\r\n        overflow: \"hidden\",\r\n      }}\r\n    >\r\n      <div\r\n        style={{\r\n          width: leftWidth,\r\n          display: \"grid\",\r\n          gridTemplateRows: \"auto 1fr\",\r\n        }}\r\n      >\r\n        <Tooltip\r\n          title={(waveVisible ? \"hide\" : \"show\") + \" Wave\"}\r\n          placement=\"right\"\r\n          disableInteractive\r\n        >\r\n          <Button\r\n            style={{ height: waveVisible ? \"128px\" : \"36px\" }}\r\n            className={classes.toggleButton}\r\n            onClick={onToggleWave}\r\n          >\r\n            {waveVisible ? <ExpandLessIcon /> : <ExpandMoreIcon />}\r\n          </Button>\r\n        </Tooltip>\r\n        <Tooltip\r\n          title={(spectrogramVisible ? \"hide\" : \"show\") + \" Spectogram\"}\r\n          placement=\"right\"\r\n          disableInteractive\r\n        >\r\n          <Button className={classes.toggleButton} onClick={onToggleSpectogram}>\r\n            {spectrogramVisible ? <ExpandLessIcon /> : <ExpandMoreIcon />}\r\n          </Button>\r\n        </Tooltip>\r\n      </div>\r\n      <div\r\n        id=\"MagnitudeSpectrogram\"\r\n        className={spectrogramVisible ? \"\" : \"spectogramMinimized\"}\r\n        style={{ width: \"100%\", overflow: \"auto\" }}\r\n      >\r\n        {/* Visualisation */}\r\n        <div ref={waveformRef}></div>\r\n      </div>\r\n    </div>\r\n  );\r\n}\r\n\r\nMagnitudeSpectrogram.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  timestamp: PropTypes.number,\r\n  leftWidth: PropTypes.number,\r\n  setWaveSurfer: PropTypes.func,\r\n  setVisibleTimeRange: PropTypes.func,\r\n};\r\n\r\nexport default withStyles(styles)(MagnitudeSpectrogram);\r\n","// Framework imports\r\nimport React, {\r\n  useContext,\r\n  useState,\r\n  useEffect,\r\n  createContext,\r\n  useRef,\r\n} from \"react\";\r\nimport { PropTypes } from \"prop-types\";\r\n\r\n// External packages\r\nimport { Grid, Typography, Tooltip } from \"@mui/material\";\r\nimport { Howl } from \"howler\";\r\n\r\n// HSA Components\r\nimport Backend from \"../../common/utils/Backend\";\r\n\r\n// Audio Viewer Components\r\nimport AudioAnnotations from \"./AudioAnnotations\";\r\nimport AudioControlBar from \"./AudioControlBar\";\r\nimport MagnitudeSpectrogram from \"./MagnitudeSpectrogram\";\r\nimport { AudioViewerContext } from \"../AudioViewer\";\r\n\r\n/**\r\n * Collected (reusable) styles for page elements.\r\n */\r\n// const styles = {\r\n//   root: {\r\n//     width: \"100%\",\r\n//     position: \"relative\",\r\n//     zIndex: 1,\r\n//   },\r\n// };\r\n\r\n/**\r\n * The step called within requestAnimationFrame to update the playback position.\r\n */\r\nconst step = (audio, callback) => {\r\n  // Determine our current seek position.\r\n  var seek = audio.seek() || 0;\r\n  callback(seek);\r\n\r\n  // If the audio is still playing, continue stepping.\r\n  if (audio.playing()) {\r\n    setTimeout(() => step(audio, callback), 30);\r\n  }\r\n};\r\n\r\n/**\r\n * Makes selected data available for all children of AudioFileContainer.\r\n * Used for information that must be synced over all components per audio file,\r\n * such as the file itself, the playback position, and annotations.\r\n */\r\nexport const AudioFileContext = createContext();\r\n\r\n/**\r\n * Contains all visualisation elements of a audio file / stream.\r\n * @param {object} file The file being used.\r\n * @param {int} labelWidth Optional. The space to keep to the left for labels. Defaults to 100.\r\n * @returns React node for AudioAnnotationItem\r\n */\r\nexport default function AudioFileContainer(props) {\r\n  const { file, labelWidth = 100 } = props;\r\n  const AudioViewer = useContext(AudioViewerContext);\r\n\r\n  // Media\r\n  const audioFileSrc = useRef(null);\r\n  const audio = useRef(null);\r\n  const waveSurfer = useRef(null);\r\n  const [timestamp, setTimestamp] = useState(0);\r\n  const [timestampPosition, setTimestampPosition] = useState(0);\r\n  const [visibleTimeRange, setVisibleTimeRange] = useState([0, 0]);\r\n\r\n  // Layout\r\n  const container = useRef();\r\n  const { containerWidth } = AudioViewer;\r\n  const [disableKeyboardShortcuts, setDisableKeyboardShortcuts] =\r\n    useState(false);\r\n  const [contentWidth, setContentWidth] = useState();\r\n  const [hoverPositionX, setHoverPositionX] = useState(0);\r\n  const [hoverBarVisible, setHoverBarVisible] = useState(false);\r\n  const forceUpdate = React.useState({})[1].bind(null, {});\r\n\r\n  const updateVisibleTimeRange = (newValue) => {\r\n    if(newValue[0] !== visibleTimeRange[0] || newValue[1] !== visibleTimeRange[1]){\r\n      setVisibleTimeRange(newValue);\r\n    }\r\n  }\r\n\r\n  useEffect(() => {\r\n    if (visibleTimeRange[1] === 0 && audio.current) {\r\n      updateVisibleTimeRange([0, audio.current.duration()]);\r\n      return;\r\n    }\r\n    if (audio.current) {\r\n      const currentDuration = audio.current.duration();\r\n      let newPosition;\r\n      if (audio.current) {\r\n        newPosition =\r\n          (timestamp - visibleTimeRange[0]) /\r\n          (visibleTimeRange[1] - visibleTimeRange[0]);\r\n      } else {\r\n        newPosition = timestamp / currentDuration;\r\n      }\r\n      setTimestampPosition(newPosition);\r\n    }\r\n  }, [timestamp, visibleTimeRange]);\r\n\r\n  useEffect(() => {\r\n    // Load and store assigned audio file once on first mount.\r\n    Backend.loadAudioFile(\r\n      file.id,\r\n      (fileUrl) => {\r\n        audioFileSrc.current = fileUrl;\r\n        const tmpHowl = new Howl({\r\n          src: [fileUrl],\r\n          format: [file.sourcePath.split(\".\").pop()],\r\n          volume: 0.1,\r\n          onload: () => {\r\n            audio.current = tmpHowl;\r\n            forceUpdate();\r\n          },\r\n          onplay: () => {\r\n            waveSurfer.current.play();\r\n\r\n            // step(audio.current, setTimestamp);\r\n          },\r\n          onpause: () => {\r\n            waveSurfer.current.pause();\r\n          },\r\n          onseek: () => {\r\n            step(audio.current, setTimestamp)\r\n          },\r\n        });\r\n      },\r\n      (err) => {\r\n        window.openErrorDialog(err);\r\n      }\r\n    );\r\n\r\n    // the return function will be called when the component unmounts\r\n    return () => {\r\n      audio.current.stop();\r\n      // Remove audio file when unmounting container.\r\n      audio.current.unload();\r\n      window.URL.revokeObjectURL(audioFileSrc.current);\r\n    };\r\n  }, []);\r\n\r\n  // Check for resized window\r\n  useEffect(() => {\r\n    calcWidths();\r\n  }, [containerWidth]);\r\n\r\n  /**\r\n   * Takes floating-point seconds and formats them to min:seconds:ms\r\n   * @param {number} t Timestamp.\r\n   * @returns {string} Formatted timestamp.\r\n   */\r\n  const valueLabelFormat = (t) => {\r\n    const minutes = Math.floor(t / 60);\r\n    let seconds = Math.floor(t % 60);\r\n    if (seconds < 10) seconds = \"0\" + seconds;\r\n    let ms = Math.floor((t % 1) * 100);\r\n    if (ms < 10) ms = \"0\" + ms;\r\n    let result = minutes + \":\" + seconds + \",\" + ms;\r\n    return result;\r\n  };\r\n\r\n  const setWaveSurfer = (ws) => {\r\n    waveSurfer.current = ws;\r\n    forceUpdate();\r\n  };\r\n\r\n  const updateTimeStampPosition = (timestamp) => {\r\n    setTimestamp(timestamp);\r\n  };\r\n\r\n  const calcWidths = () => {\r\n    const boundingBox = container.current.getBoundingClientRect();\r\n    setContentWidth(boundingBox?.width ? boundingBox.width - labelWidth : 0);\r\n  };\r\n\r\n  // Set up context for all children\r\n  const context = {\r\n    file: file,\r\n    audio: audio.current,\r\n    timestamp,\r\n    audioFileSrc: audioFileSrc.current,\r\n    updateTimeStampPosition,\r\n    labelWidth,\r\n    contentWidth,\r\n    valueLabelFormat,\r\n    disableKeyboardShortcuts,\r\n  };\r\n\r\n  const handleMouseMove = (e) => {\r\n    const startX = labelWidth + 10;\r\n    setHoverPositionX(Math.max(0, e.pageX - startX));\r\n  };\r\n\r\n  const handleMouseEnter = () => {\r\n    setHoverBarVisible(true);\r\n    handleContainerFocus(true)\r\n  };\r\n\r\n  const handleMouseLeave = () => {\r\n    setHoverBarVisible(false);\r\n  };\r\n\r\n  const getTimeStamp = (xPos) => {\r\n    if (audio.current) {\r\n      return (xPos * audio.current.duration()) / contentWidth;\r\n    }\r\n    return xPos;\r\n  };\r\n\r\n  const pixelToTime = (x) => {\r\n    let result = x;\r\n    if (audio.current) {\r\n      result = valueLabelFormat(getTimeStamp(x));\r\n    }\r\n    return result;\r\n  };\r\n\r\n  const handleContainerFocus = (value) => {\r\n    setDisableKeyboardShortcuts(!value);\r\n    if(value) {\r\n      container.current.focus();\r\n    }\r\n  }\r\n\r\n  return (\r\n    <Grid\r\n      tabIndex={0} // Make container focusable\r\n      container\r\n      onBlur={() => handleContainerFocus(false)}\r\n      ref={container}\r\n    >\r\n      <Typography>{file.fileName}</Typography>\r\n      <AudioFileContext.Provider value={context}>\r\n        {audio.current &&  (\r\n          <React.Fragment>\r\n            <AudioControlBar\r\n              getWaveSurfer={() => waveSurfer.current}\r\n              timestamp={timestamp}\r\n            />\r\n            <Tooltip\r\n              title={hoverPositionX > 0 ? pixelToTime(hoverPositionX) : \"\"}\r\n              placement=\"top\"\r\n              followCursor\r\n            >\r\n              <div\r\n                style={{\r\n                  position: \"relative\",\r\n                  width: \"100%\",\r\n                }}\r\n                onMouseMove={handleMouseMove}\r\n                onMouseEnter={handleMouseEnter}\r\n                onMouseLeave={handleMouseLeave}\r\n              >\r\n                <MagnitudeSpectrogram\r\n                  leftWidth={labelWidth}\r\n                  timestamp={timestamp}\r\n                  setWaveSurfer={setWaveSurfer}\r\n                  setVisibleTimeRange={updateVisibleTimeRange}\r\n                />\r\n                <AudioAnnotations\r\n                  timestampPosition={timestampPosition}\r\n                  hoverPositionX={hoverPositionX}\r\n                  hoverBarVisible={hoverBarVisible}\r\n                  labelWidth={labelWidth}\r\n                  file={file}\r\n                  visibleTimeRange={visibleTimeRange}\r\n                />\r\n                <div\r\n                  style={{\r\n                    position: \"absolute\",\r\n                    top: 0,\r\n                    left: 0,\r\n                    width: \"100%\",\r\n                    height: \"100%\",\r\n                    display: \"grid\",\r\n                    gridTemplateColumns: \"auto 1fr\",\r\n                    pointerEvents: \"none\",\r\n                  }}\r\n                >\r\n                  <div style={{ width: labelWidth }}></div>\r\n                  <div\r\n                    style={{\r\n                      position: \"relative\",\r\n                      width: \"100%\",\r\n                      zIndex: 10,\r\n                    }}\r\n                  >\r\n                    <div\r\n                      style={{\r\n                        display: hoverBarVisible ? \"block\" : \"none\",\r\n                        position: \"absolute\",\r\n                        top: 0,\r\n                        left: hoverPositionX,\r\n                        height: \"100%\",\r\n                        width: 0,\r\n                        border: \"1px solid rgba(0,0,0,0.5)\",\r\n                      }}\r\n                    ></div>\r\n                  </div>\r\n                </div>\r\n              </div>\r\n            </Tooltip>\r\n          </React.Fragment>\r\n        )}\r\n      </AudioFileContext.Provider>\r\n    </Grid>\r\n  );\r\n}\r\n\r\nAudioFileContainer.propTypes = {\r\n  file: PropTypes.object.isRequired,\r\n  labelWidth: PropTypes.number,\r\n};\r\n","import React from \"react\";\r\nimport { Grid } from \"@mui/material\";\r\nimport { PropTypes } from \"prop-types\";\r\n\r\n// HSA Components\r\nimport AudioFileContainer from \"./components/AudioFileContainer\";\r\n\r\n/**\r\n * Collected (reusable) styles for page elements.\r\n */\r\nconst styles = {\r\n  root: {\r\n    height: \"100%\",\r\n    overflowY: \"auto\",\r\n    padding: \"10px\",\r\n  },\r\n};\r\n\r\n/**\r\n * The distance from the right in px before annotations, playbar, and visualizations begin.\r\n */\r\nconst LABEL_WIDTH = 100;\r\n\r\n/**\r\n * Element containing all visualisations of all audio files / streams in a project.\r\n * @param {array} files All files to be rendered in the AudioViewer.\r\n * @returns React node for AudioRenderer\r\n */\r\nexport default function AudioRenderer(props) {\r\n  const { files = [], ...other } = props;\r\n  return (\r\n    <Grid sx={{ ...other.style, ...other.sx, ...styles.root }}>\r\n      {files.map((file) => (\r\n        <AudioFileContainer\r\n          key={file.id}\r\n          file={file}\r\n          labelWidth={LABEL_WIDTH}\r\n        />\r\n      ))}\r\n    </Grid>\r\n  );\r\n}\r\n\r\nAudioRenderer.propTypes = {\r\n  files: PropTypes.array,\r\n};\r\n","import React from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport SvgIcon from \"@mui/material/SvgIcon\";\r\n\r\nfunction ExclusionBoxIcon(props) {\r\n  return (\r\n    <SvgIcon {...props} viewBox=\"0 0 40 40\">\r\n      <rect x=\"0\" y=\"0\" width=\"20\" height=\"40\" fill={props.color} />\r\n      <rect x=\"25\" y=\"0\" width=\"20\" height=\"40\" fill={props.color} />\r\n    </SvgIcon>\r\n  );\r\n}\r\n\r\nExclusionBoxIcon.propTypes = {\r\n  color: PropTypes.string,\r\n};\r\n\r\nexport default ExclusionBoxIcon;\r\n","// Framework imports\r\nimport React, { useEffect, useContext } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport { Save } from \"@mui/icons-material\";\r\n\r\n// External packages\r\nimport { Grid, IconButton, Tooltip, Divider } from \"@mui/material\";\r\nimport { FontAwesomeIcon } from \"@fortawesome/react-fontawesome\";\r\nimport { faExchangeAlt } from \"@fortawesome/free-solid-svg-icons\";\r\nimport { AudioViewerContext } from \"./AudioViewer\";\r\nimport ExclusionBoxIcon from \"./components/ExclusionBoxIcon\";\r\n\r\n/**\r\n * Collected (reusable) styles for page elements.\r\n */\r\nconst styles = {\r\n  root: {\r\n    height: \"100%\",\r\n    background: \"#fff\",\r\n    borderLeft: \"5px solid  #EBEBEB\",\r\n    display: \"grid\",\r\n    gridTemplateRows: \"1fr auto\",\r\n  },\r\n  saveButton: {\r\n    color: \"primary.main\",\r\n  },\r\n  divider: {\r\n    marginLeft: \"5px\",\r\n    marginRight: \"5px\",\r\n  },\r\n};\r\n\r\n/**\r\n * Vertical toolbar for quick tool selection.\r\n * @param {function} save A function to execute to save the project.\r\n * @returns React node for AudioToolBar.\r\n */\r\nexport default function AudioToolBar(props) {\r\n  const { save, ...other } = props;\r\n  const AudioViewer = useContext(AudioViewerContext);\r\n  const { excludeToolActive, setExcludeToolActive } = AudioViewer;\r\n\r\n  /**\r\n   * Handle keyboard strokes.\r\n   * @param {event} e KeyboardEvent.\r\n   */\r\n  const handleKeyDownEvent = (e) => {\r\n    if (e.ctrlKey) {\r\n      if (e.code === \"KeyS\") {\r\n        save();\r\n        e.preventDefault();\r\n      }\r\n    }\r\n  };\r\n\r\n  useEffect(() => {\r\n    window.addEventListener(\"keydown\", handleKeyDownEvent);\r\n    return () => window.removeEventListener(\"keydown\", handleKeyDownEvent);\r\n  }, []);\r\n\r\n  return (\r\n    <Grid sx={{ ...other.style, ...other.sx, ...styles.root }}>\r\n      <div>\r\n        <Tooltip\r\n          title={\r\n            \"Exclude overlaps\" + (excludeToolActive ? \" active\" : \" inactive\")\r\n          }\r\n        >\r\n          <IconButton\r\n            size=\"large\"\r\n            onClick={() => setExcludeToolActive(!excludeToolActive)}\r\n            sx={{\r\n              color: excludeToolActive ? \"primary.main\" : \"primary.inactive\",\r\n            }}\r\n          >\r\n            <ExclusionBoxIcon />\r\n          </IconButton>\r\n        </Tooltip>\r\n      </div>\r\n      <div>\r\n        <Tooltip disableInteractive placement=\"left\" title=\"Toggle sidebar\">\r\n          <IconButton size=\"large\" onClick={() => AudioViewer.toggleSideBar()}>\r\n            <FontAwesomeIcon icon={faExchangeAlt} />\r\n          </IconButton>\r\n        </Tooltip>\r\n        <Divider sx={styles.divider} />\r\n        <Tooltip disableInteractive placement=\"left\" title=\"Save [Ctrl]+[S]\">\r\n          <IconButton sx={styles.saveButton} onClick={save} size=\"large\">\r\n            <Save />\r\n          </IconButton>\r\n        </Tooltip>\r\n      </div>\r\n    </Grid>\r\n  );\r\n}\r\n\r\nAudioToolBar.propTypes = {\r\n  save: PropTypes.func.isRequired,\r\n};\r\n","// Copyright: HS Analysis GmbH\r\n// Author: Valentin Haas\r\n// Taken from https://mui.com/material-ui/react-tree-view/#contentcomponent-prop\r\n\r\n// Framework imports\r\nimport React from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\n// External packages\r\nimport clsx from \"clsx\";\r\nimport Typography from \"@mui/material/Typography\";\r\nimport TreeItem, { useTreeItem } from \"@mui/lab/TreeItem\";\r\n\r\n/**\r\n * TreeItem component that differntiales between click on icon and click on label.\r\n * Basically a copy of the original TreeItem component with the difference that the\r\n * click on the label can be handled separately using the handleSelection function.\r\n */\r\nconst ClickAwareTreeItemContent = React.forwardRef(\r\n  function ClickAwareTreeItemContent(props, ref) {\r\n    const {\r\n      classes,\r\n      className,\r\n      label,\r\n      nodeId,\r\n      icon: iconProp,\r\n      expansionIcon,\r\n      displayIcon,\r\n    } = props;\r\n\r\n    const {\r\n      disabled,\r\n      expanded,\r\n      selected,\r\n      focused,\r\n      handleExpansion,\r\n      handleSelection,\r\n      preventSelection,\r\n    } = useTreeItem(nodeId);\r\n\r\n    const icon = iconProp || expansionIcon || displayIcon;\r\n\r\n    const handleMouseDown = (event) => {\r\n      preventSelection(event);\r\n    };\r\n\r\n    const handleExpansionClick = (event) => {\r\n      handleExpansion(event);\r\n    };\r\n\r\n    const handleSelectionClick = (event) => {\r\n      handleSelection(event);\r\n    };\r\n\r\n    return (\r\n      <div\r\n        className={clsx(className, classes.root, {\r\n          [classes.expanded]: expanded,\r\n          [classes.selected]: selected,\r\n          [classes.focused]: focused,\r\n          [classes.disabled]: disabled,\r\n        })}\r\n        onMouseDown={handleMouseDown}\r\n        ref={ref}\r\n      >\r\n        <div onClick={handleExpansionClick} className={classes.iconContainer}>\r\n          {icon}\r\n        </div>\r\n        <Typography\r\n          onClick={handleSelectionClick}\r\n          component=\"div\"\r\n          className={classes.label}\r\n        >\r\n          {label}\r\n        </Typography>\r\n      </div>\r\n    );\r\n  }\r\n);\r\n\r\nClickAwareTreeItemContent.propTypes = {\r\n  /**\r\n   * Override or extend the styles applied to the component.\r\n   */\r\n  classes: PropTypes.object.isRequired,\r\n  /**\r\n   * className applied to the root element.\r\n   */\r\n  className: PropTypes.string,\r\n  /**\r\n   * The icon to display next to the tree node's label. Either a parent or end icon.\r\n   */\r\n  displayIcon: PropTypes.node,\r\n  /**\r\n   * The icon to display next to the tree node's label. Either an expansion or collapse icon.\r\n   */\r\n  expansionIcon: PropTypes.node,\r\n  /**\r\n   * The icon to display next to the tree node's label.\r\n   */\r\n  icon: PropTypes.node,\r\n  /**\r\n   * The tree node label.\r\n   */\r\n  label: PropTypes.node,\r\n  /**\r\n   * The id of the node.\r\n   */\r\n  nodeId: PropTypes.string.isRequired,\r\n};\r\n\r\n/**\r\n * A TreeItem that does not catch a click event when clicking on the label.\r\n * This allows to handle the click on the label separately from an icon click.\r\n * @param {object} props Same props as TreeItem.\r\n * @returns {JSX.Element} The ClickAwareTreeItem component.\r\n */\r\nexport default function ClickAwareTreeItem(props) {\r\n  return <TreeItem ContentComponent={ClickAwareTreeItemContent} {...props} />;\r\n}\r\n","// Framework imports\r\nimport React, { useState } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\n// External packages\r\nimport { Grid, IconButton } from \"@mui/material\";\r\nimport MoreVertIcon from \"@mui/icons-material/MoreVert\";\r\nimport { Menu, MenuItem, Divider } from \"@mui/material\";\r\nimport { GetApp, Publish } from \"@mui/icons-material\";\r\nimport PlaylistAdd from \"@mui/icons-material/PlaylistAdd\";\r\nimport FileCopy from \"@mui/icons-material/FileCopy\";\r\nimport ArrowDownward from \"@mui/icons-material/ArrowDownward\";\r\nimport ArrowUpward from \"@mui/icons-material/ArrowUpward\";\r\nimport Delete from \"@mui/icons-material/Delete\";\r\n\r\n// HSA Components\r\nimport Structure, {\r\n  structureCanMove,\r\n  moveStructure,\r\n  insertStructure,\r\n  deleteStructure,\r\n  duplicateStructure,\r\n  newStructureId,\r\n} from \"../../common/components/Structure\";\r\nimport { AnnotationAction } from \"../../common/components/RoiTypes\";\r\nimport { getUnusedColor } from \"../../common/utils/RandomColorGenerator\";\r\n\r\nconst styles = {\r\n  menuIcon: { marginRight: \"16px\" },\r\n};\r\n\r\n/**\r\n * All options and operations associated with structures in a project.\r\n * @param {object} structure The structure the menu referrs to.\r\n * @param {array} structures All structures of a project.\r\n * @param {function} setStructures Update all structures of a project. Receives (array structures).\r\n * @param {function} triggerAction Flag a structure to have it's annotations exported. Receives (Structure structure, AnnotationAction: action).\r\n * @returns React node for StructureOptionMenu.\r\n */\r\nexport default function StructureOptionMenu(props) {\r\n  const { structure, structures, setStructures, triggerAction, ...other } =\r\n    props;\r\n  if (!(structure instanceof Structure)) {\r\n    throw TypeError(\r\n      `structure must be of type Structure, received ${typeof structure}: ${structure}`\r\n    );\r\n  }\r\n  if (!Array.isArray(structures)) {\r\n    throw TypeError(\r\n      `structures must be of type Array, received ${typeof structures}: ${structures}`\r\n    );\r\n  }\r\n\r\n  const [anchorEl, setAnchorEl] = React.useState(null);\r\n  const [menuOpen, setMenuOpen] = useState(false);\r\n\r\n  /**\r\n   * Add a child structure to an exisisting parentstructure.\r\n   * @param {bool} isStructure Whether the new substructure is a sub-structure (true) or sub-class (false).\r\n   */\r\n  const addChild = (isStructure) => {\r\n    let newStructure = new Structure(\r\n      newStructureId(structures),\r\n      isStructure\r\n        ? `Substructure of ${structure.label}`\r\n        : `Subclass of ${structure.label}`,\r\n      isStructure,\r\n      getUnusedColor(structures),\r\n      true,\r\n      structure.id,\r\n      0,\r\n      false,\r\n      true,\r\n      false,\r\n      structure.nestingDepth + 1,\r\n      0\r\n    );\r\n    setStructures(insertStructure(newStructure, structures));\r\n    setMenuOpen(false);\r\n  };\r\n\r\n  const onDuplicateStructure = () => {\r\n    setStructures(duplicateStructure(structure, structures));\r\n    setMenuOpen(false);\r\n  };\r\n\r\n  const onExportAnnotations = () => {\r\n    triggerAction(structure, AnnotationAction.Export);\r\n    setMenuOpen(false);\r\n  };\r\n\r\n  const onImportAnnotations = () => {\r\n    triggerAction(structure, AnnotationAction.Import);\r\n    setMenuOpen(false);\r\n  };\r\n\r\n  return (\r\n    <Grid sx={{ ...other.style, ...other.sx }}>\r\n      <IconButton\r\n        onClick={(event) => {\r\n          setAnchorEl(event.currentTarget);\r\n          setMenuOpen((oldState) => !oldState);\r\n        }}\r\n      >\r\n        <MoreVertIcon />\r\n      </IconButton>\r\n      {menuOpen && (\r\n        <Menu\r\n          open={menuOpen}\r\n          anchorEl={anchorEl}\r\n          onClose={() => {\r\n            setAnchorEl(null);\r\n            setMenuOpen(false);\r\n          }}\r\n        >\r\n          <MenuItem\r\n            key={10}\r\n            onClick={() => addChild(true)}\r\n            disabled={!structure.isStructure || !structure.isDynamic}\r\n          >\r\n            <PlaylistAdd sx={styles.menuIcon} fontSize=\"small\" />\r\n            Add substructure\r\n          </MenuItem>\r\n          <MenuItem\r\n            key={20}\r\n            onClick={() => addChild(false)}\r\n            disabled={!structure.isDynamic}\r\n          >\r\n            <PlaylistAdd sx={styles.menuIcon} fontSize=\"small\" />\r\n            Add subclass\r\n          </MenuItem>\r\n          <MenuItem key={30} onClick={onDuplicateStructure}>\r\n            <FileCopy sx={styles.menuIcon} fontSize=\"small\" />\r\n            Duplicate structure\r\n          </MenuItem>\r\n          <MenuItem key={40} onClick={onExportAnnotations}>\r\n            <GetApp sx={styles.menuIcon} fontSize=\"small\" />\r\n            Export annotations\r\n          </MenuItem>\r\n          <MenuItem key={50} onClick={onImportAnnotations}>\r\n            <Publish sx={styles.menuIcon} fontSize=\"small\" />\r\n            Import annotations\r\n          </MenuItem>\r\n          <Divider key={100} />\r\n          <MenuItem\r\n            key={110}\r\n            onClick={() =>\r\n              setStructures(moveStructure(structure, -1, structures))\r\n            }\r\n            disabled={\r\n              // !structure.isDynamic ||\r\n              !structureCanMove(structure, -1, structures)\r\n            }\r\n          >\r\n            <ArrowUpward sx={styles.menuIcon} fontSize=\"small\" />\r\n            Move structure up\r\n          </MenuItem>\r\n          <MenuItem\r\n            key={120}\r\n            onClick={() =>\r\n              setStructures(moveStructure(structure, +1, structures))\r\n            }\r\n            disabled={\r\n              // !structure.isDynamic ||\r\n              !structureCanMove(structure, +1, structures)\r\n            }\r\n          >\r\n            <ArrowDownward sx={styles.menuIcon} fontSize=\"small\" />\r\n            Move structure down\r\n          </MenuItem>\r\n          <Divider key={200} />\r\n          <MenuItem\r\n            key={210}\r\n            sx={{ color: \"red\" }}\r\n            onClick={() =>\r\n              setStructures(\r\n                deleteStructure(structure, structures, (struct) =>\r\n                  triggerAction(struct, AnnotationAction.DeleteAll)\r\n                )\r\n              )\r\n            }\r\n            disabled={!structure.isDynamic}\r\n          >\r\n            <Delete sx={styles.menuIcon} fontSize=\"small\" />\r\n            Delete structure\r\n          </MenuItem>\r\n        </Menu>\r\n      )}\r\n    </Grid>\r\n  );\r\n}\r\n\r\nStructureOptionMenu.propTypes ==\r\n  {\r\n    structure: PropTypes.instanceOf(Structure).isRequired,\r\n    structures: PropTypes.array.isRequired,\r\n    setStructures: PropTypes.func.isRequired,\r\n    triggerAction: PropTypes.func.isRequired,\r\n  };\r\n","// Framework imports\r\nimport React, { useState, useEffect } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\n// External packages\r\nimport AccountTreeIcon from \"@mui/icons-material/AccountTree\";\r\nimport Checkbox from \"@mui/material/Checkbox\";\r\nimport Grid from \"@mui/material/Grid\";\r\nimport IconButton from \"@mui/material/IconButton\";\r\nimport StopIcon from \"@mui/icons-material/Stop\";\r\nimport TextField from \"@mui/material/TextField\";\r\nimport Tooltip from \"@mui/material/Tooltip\";\r\nimport Visibility from \"@mui/icons-material/Visibility\";\r\nimport VisibilityOff from \"@mui/icons-material/VisibilityOff\";\r\n\r\n// HSA packages\r\nimport ClickAwareTreeItem from \"../../common/components/ClickAwareTreeItem\";\r\nimport Structure from \"../../common/components/Structure\";\r\nimport SketchColorPicker from \"../../common/components/SketchColorPicker\";\r\nimport StructureOptionMenu from \"./StructureOptionMenu\";\r\nimport { theme } from \"../../index\";\r\n\r\nconst styles = {\r\n  structure: {\r\n    width: \"100%\",\r\n    display: \"grid\",\r\n    overflow: \"hidden\",\r\n    alignItems: \"center\",\r\n  },\r\n  structureElement: { marginRight: \"10px\" },\r\n  inputElement: {\r\n    width: \"100%\",\r\n    textOverflow: \"ellipsis\",\r\n    overflow: \"hidden\",\r\n    whiteSpace: \"nowrap\",\r\n  },\r\n  structureIcon: {\r\n    color: \"primary.inactive\",\r\n    padding: \"3px\",\r\n  },\r\n};\r\n\r\n/**\r\n * Structure items that can be used inside a mui TreeView.\r\n * Will render children depending on childrens presence.\r\n * @param {object} structure The structure to use.\r\n * @param {array} structures All structures of a project.\r\n * @param {Structure} selectedStructure Optional. The currently selected structure. Default: null.\r\n * @returns {JSX.Element} The structure item.\r\n */\r\nexport default function RecursiveStructureItem(props) {\r\n  const {\r\n    structure,\r\n    structures,\r\n    selectedStructure = null,\r\n    trainingSettings = null,\r\n    setTrainingSettings = () => {},\r\n    ...other\r\n  } = props;\r\n  const leftSpacing =\r\n    structure.nestingDepth > 0 ? structure.nestingDepth * 17 : 0;\r\n\r\n  return structure.hasChildren ? (\r\n    <ClickAwareTreeItem\r\n      nodeId={structure.id.toString()}\r\n      sx={{\r\n        ...other.style,\r\n        ...other.sx,\r\n        marginLeft: -leftSpacing + \"px\",\r\n        paddingLeft: leftSpacing + \"px\",\r\n        background:\r\n          selectedStructure?.id === structure.id\r\n            ? theme.palette.selected.main\r\n            : \"white\",\r\n      }}\r\n      label={\r\n        <StructureItem\r\n          structure={structure}\r\n          structures={structures}\r\n          trainingSettings={trainingSettings}\r\n          setTrainingSettings={setTrainingSettings}\r\n          {...other}\r\n        />\r\n      }\r\n    >\r\n      {structures\r\n        .filter((s) => s.parentId === structure.id)\r\n        .map((structure) => (\r\n          <RecursiveStructureItem\r\n            key={structure.id}\r\n            structure={structure}\r\n            structures={structures}\r\n            selectedStructure={selectedStructure}\r\n            trainingSettings={trainingSettings}\r\n            setTrainingSettings={setTrainingSettings}\r\n            {...other}\r\n          />\r\n        ))}\r\n    </ClickAwareTreeItem>\r\n  ) : (\r\n    <ClickAwareTreeItem\r\n      nodeId={structure.id.toString()}\r\n      sx={{\r\n        ...other.style,\r\n        ...other.sx,\r\n        marginLeft: -leftSpacing + \"px\",\r\n        paddingLeft: leftSpacing + \"px\",\r\n        background:\r\n          selectedStructure?.id === structure.id\r\n            ? theme.palette.selected.main\r\n            : \"white\",\r\n      }}\r\n      label={\r\n        <StructureItem\r\n          structure={structure}\r\n          structures={structures}\r\n          trainingSettings={trainingSettings}\r\n          setTrainingSettings={setTrainingSettings}\r\n          {...other}\r\n        />\r\n      }\r\n    />\r\n  );\r\n}\r\n\r\nRecursiveStructureItem.propTypes = {\r\n  structure: PropTypes.instanceOf(Structure).isRequired,\r\n  structures: PropTypes.array.isRequired,\r\n  setStructures: PropTypes.func,\r\n  selectedStructure: PropTypes.instanceOf(Structure),\r\n  setSelectedStructure: PropTypes.func,\r\n  triggerAction: PropTypes.func,\r\n  isLocked: PropTypes.bool,\r\n  isInSelectionMode: PropTypes.bool,\r\n  trainingSettings: PropTypes.object,\r\n  setTrainingSettings: PropTypes.func,\r\n};\r\n\r\n/**\r\n * Structure display with options.\r\n * @param {object} structure The structure to use.\r\n * @param {array} structures All structures of a project.\r\n * @param {function} setStructures Optional. Update all structures of a project. Receives (array structures). Default: () => {}.\r\n * @param {function} setSelectedStructure Optional. Set the currrently selected structure. Receives (uint id | null). Default: () => {}.\r\n * @param {function} triggerAction Optional. Flag a structure to have it's annotations exported. Receives (Structure structure). Default: () => {}.\r\n * @param {bool} isLocked Optional. Flag if the tree is locked. Default: false.\r\n * @param {bool} isInSelectionMode Optional. Flag if the tree is in selection mode. Default: false.\r\n * @param {function} updateChoosability Optional. Triggers update of choosability of all structures. Default: () => {}.\r\n * @returns React node for StructureItem.\r\n */\r\nexport function StructureItem(props) {\r\n  const {\r\n    structure,\r\n    structures,\r\n    setStructures = () => {},\r\n    setSelectedStructure = () => {},\r\n    triggerAction = () => {},\r\n    isLocked = false,\r\n    isInSelectionMode = false,\r\n    updateChoosability = () => {},\r\n    trainingSettings = null,\r\n    setTrainingSettings = () => {},\r\n    ...other\r\n  } = props;\r\n\r\n  // TODO: Remove copies, work directly on structure object\r\n  const [label, setLabel] = useState(structure.label);\r\n  const [color, setColor] = useState(structure.color);\r\n  const [isChosen, setIsChosen] = useState(structure.isChosen);\r\n  const [annotationsAreVisible, setAnnotationVisibility] = useState(\r\n    structure.annotationsAreVisible\r\n  );\r\n\r\n  useEffect(() => updateStructure(), [annotationsAreVisible, isChosen]);\r\n  useEffect(() => updateChoosability(), [isChosen, structure.isChosen]);\r\n\r\n  useEffect(() => {\r\n    setLabel(structure.label);\r\n    setColor(structure.color);\r\n    setIsChosen(structure.isChosen);\r\n    setAnnotationVisibility(structure.annotationsAreVisible);\r\n  }, [structures]);\r\n\r\n  /**\r\n   * Updates the structure within the structures array.\r\n   * @returns {void}\r\n   */\r\n  const updateStructure = () => {\r\n    const tmpStructures = structures;\r\n    const tmpStructure = tmpStructures.find((s) => s.id === structure.id);\r\n    tmpStructure.isChosen = isChosen;\r\n\r\n    if (isLocked) return;\r\n    tmpStructure.label = label;\r\n    tmpStructure.color = color;\r\n    tmpStructure.annotationsAreVisible = annotationsAreVisible;\r\n\r\n    // Write updates\r\n    setStructures(tmpStructures.map((s) => s));\r\n  };\r\n\r\n  return (\r\n    <Grid\r\n      sx={{\r\n        ...other.style,\r\n        ...other.sx,\r\n        ...styles.structure,\r\n        ...(isInSelectionMode\r\n          ? { gridTemplateColumns: \"auto auto 1fr auto auto auto\" }\r\n          : { gridTemplateColumns: \"auto 1fr auto auto auto\" }),\r\n      }}\r\n      onClick={() => setSelectedStructure(structure)}\r\n      {...other}\r\n    >\r\n      <Checkbox\r\n        name=\"CheckboxStructureChosen\"\r\n        disabled={!(structure.canBeChosen || structure.isChosen)}\r\n        sx={{\r\n          display: isInSelectionMode ? \"block\" : \"none\",\r\n        }}\r\n        color={\r\n          structure.isChosen && !structure.canBeChosen ? \"error\" : \"primary\"\r\n        }\r\n        checked={isChosen}\r\n        onChange={() => {\r\n          setIsChosen((old) => !old);\r\n          updateStructure();\r\n          // update training settings\r\n          setTrainingSettings(() => {\r\n            trainingSettings.structures = structures\r\n              .map((item) => {\r\n                if (item.id === structure.id) {\r\n                  item.isChosen = !structure.isChosen;\r\n                }\r\n                return item;\r\n              })\r\n              .filter((s) => s.isChosen);\r\n            return trainingSettings;\r\n          });\r\n        }}\r\n      />\r\n      <Tooltip\r\n        disableInteractive\r\n        title={structure.isStructure ? \"Structure\" : \"Class\"}\r\n      >\r\n        {structure.isStructure ? (\r\n          <StopIcon sx={styles.structureIcon} />\r\n        ) : (\r\n          <AccountTreeIcon sx={styles.structureIcon} />\r\n        )}\r\n      </Tooltip>\r\n      <Tooltip\r\n        sx={styles.structureElement}\r\n        title={`${structure.totalObjectCount} rois over all`}\r\n      >\r\n        <TextField\r\n          variant=\"standard\"\r\n          name=\"Textfield\"\r\n          sx={styles.inputElement}\r\n          disabled={isLocked}\r\n          value={label === null ? \"\" : label}\r\n          onChange={(e) => setLabel(e.target.value)}\r\n          onBlur={updateStructure}\r\n        />\r\n      </Tooltip>\r\n      {!isLocked && (\r\n        <Tooltip\r\n          disableInteractive\r\n          title={\r\n            annotationsAreVisible\r\n              ? \"Hide current structure\"\r\n              : \"Show current structure\"\r\n          }\r\n        >\r\n          <IconButton\r\n            sx={{ ...styles.structureElement, ...styles.structureIcon }}\r\n            onClick={(e) => {\r\n              setAnnotationVisibility((old) => !old);\r\n              e.stopPropagation();\r\n            }}\r\n          >\r\n            {annotationsAreVisible ? <Visibility /> : <VisibilityOff />}\r\n          </IconButton>\r\n        </Tooltip>\r\n      )}\r\n      <Grid sx={styles.structureElement}>\r\n        <SketchColorPicker\r\n          color={color}\r\n          handleChange={(newColor) => {\r\n            if (isLocked) return;\r\n            setColor(newColor);\r\n          }}\r\n          onClose={updateStructure}\r\n        />\r\n      </Grid>\r\n      {!isLocked && (\r\n        <StructureOptionMenu\r\n          sx={styles.structureElement}\r\n          structure={structure}\r\n          structures={structures}\r\n          setStructures={setStructures}\r\n          triggerAction={triggerAction}\r\n        />\r\n      )}\r\n    </Grid>\r\n  );\r\n}\r\n\r\nStructureItem.propTypes = {\r\n  structure: PropTypes.instanceOf(Structure).isRequired,\r\n  structures: PropTypes.array.isRequired,\r\n  setStructures: PropTypes.func,\r\n  setSelectedStructure: PropTypes.func,\r\n  triggerAction: PropTypes.func,\r\n  isLocked: PropTypes.bool,\r\n  isInSelectionMode: PropTypes.bool,\r\n  updateChoosability: PropTypes.func,\r\n  trainingSettings: PropTypes.object,\r\n  setTrainingSettings: PropTypes.func,\r\n};\r\n","// Framework imports\r\nimport React, { useState, useEffect } from \"react\";\r\nimport { PropTypes } from \"prop-types\";\r\n\r\n// External imports\r\nimport {\r\n  Grid,\r\n  IconButton,\r\n  TextField,\r\n  Tooltip,\r\n  Typography,\r\n} from \"@mui/material\";\r\nimport TreeView from \"@mui/lab/TreeView\";\r\nimport ExpandMoreIcon from \"@mui/icons-material/ExpandMore\";\r\nimport ChevronRightIcon from \"@mui/icons-material/ChevronRight\";\r\nimport {\r\n  Add,\r\n  Delete,\r\n  GetApp,\r\n  Publish,\r\n  Visibility,\r\n  VisibilityOff,\r\n} from \"@mui/icons-material\";\r\n\r\n// HSA Imports\r\nimport Structure, {\r\n  exportStructures,\r\n  importStructures,\r\n  insertStructure,\r\n  newStructureId,\r\n} from \"../../common/components/Structure\";\r\nimport { AnnotationAction } from \"../../common/components/RoiTypes\";\r\nimport RecursiveStructureItem from \"./StructureItem\";\r\nimport { getUnusedColor } from \"../../common/utils/RandomColorGenerator\";\r\n\r\nconst styles = {\r\n  root: {\r\n    display: \"grid\",\r\n    gridTemplateRows: \"auto auto auto 1fr\",\r\n    height: \"100%\",\r\n    overflow: \"hidden\",\r\n  },\r\n  structureButtons: {\r\n    display: \"grid\",\r\n    gridTemplateColumns: \"1fr auto auto auto auto\",\r\n  },\r\n  structureList: {\r\n    overflow: \"auto\",\r\n  },\r\n  newStructure: {\r\n    display: \"grid\",\r\n    gridTemplateColumns: \"auto 1fr\",\r\n    paddingRight: \"10px\",\r\n  },\r\n};\r\n\r\n/**\r\n * Displays all structures of a project in a collapsible manner.\r\n * @param {object} project The project the strucuture tree referrs to.\r\n * @param {object} user The current user.\r\n * @param {array} structures Optional. All structures of a project. Default: [].\r\n * @param {function} setStructures Optional. Update all structures of a project. Receives (array structures). Default: () => {}.\r\n * @param {Structure} selectedStructure Optional. The currently selected structure. Default: null.\r\n * @param {function} setSelectedStructure Optional. Set the currently selected structure. Receives (Structure structure). Default: () => {}.\r\n * @param {function} triggerAction Optional. Flag a structure to perform an AnnotationAction. Receives (Structure: structure, AnnotationAction: action). Default: () => {}.\r\n * @param {boolean} isLocked Optional. Flag if the structure tree is locked. When locked, no modifications are possible and symbols are hidden. Default: false.\r\n * @param {function} allowChoices Optional. Flag if the structure tree should allow choices. Default: false.\r\n * @param {boolean|function} structureSelectability Optional. Evalaute or determine if a structure is selectable. A function receives (Structure: structure) and returns (boolean: isSelectable).\r\n * @param {boolean} allStructuresEnabled Optional. Flag if all structures are enabled. Overrides structureSelectability. Default: true.\r\n * @returns React node for StructureTree.\r\n */\r\nexport default function StructureTree(props) {\r\n  const {\r\n    project,\r\n    user,\r\n    structures = [],\r\n    setStructures = () => {},\r\n    selectedStructure = null,\r\n    setSelectedStructure = () => {},\r\n    triggerAction = () => {},\r\n    isLocked = false,\r\n    allowChoices: isInSelectionMode = false,\r\n    structureSelectability = true,\r\n    allStructuresEnabled = true,\r\n    trainingSettings = null,\r\n    setTrainingSettings = () => {},\r\n    ...other\r\n  } = props;\r\n\r\n  const [allRoisHidden, setAllRoisHidden] = useState(false);\r\n  const [newStructureName, setNewStructureName] = useState(\"\");\r\n\r\n  useEffect(() => {\r\n    updateStructureSelectability();\r\n  }, [allStructuresEnabled]);\r\n\r\n  /**\r\n   * Toggles all structures to be either shown or hidden\r\n   */\r\n  const toggleAllRoisHidden = () => {\r\n    const updatedStructures = structures.map((s) => {\r\n      s.annotationsAreVisible = !allRoisHidden;\r\n      return s;\r\n    });\r\n    setAllRoisHidden(!allRoisHidden);\r\n    setStructures(updatedStructures);\r\n  };\r\n\r\n  /**\r\n   * Determines if the structure can be selected.\r\n   * @param {Structure} structure The structure to be checked.\r\n   * @returns {bool} True if the structure can be selected, false otherwise.\r\n   */\r\n  const canBeChosen = (structure) => {\r\n    if (typeof structureSelectability === \"function\") {\r\n      return isInSelectionMode && structureSelectability(structure);\r\n    }\r\n    return isInSelectionMode && structureSelectability;\r\n  };\r\n\r\n  const updateStructureSelectability = () => {\r\n    setStructures(\r\n      structures.map((s) => {\r\n        s.canBeChosen = canBeChosen(s);\r\n        return s;\r\n      })\r\n    );\r\n  };\r\n\r\n  /**\r\n   * Add a new structure to bottom of top-level structures.\r\n   * @param {string} label The name of the new structure.\r\n   */\r\n  const addNewStructure = (label) => {\r\n    if (isLocked) return;\r\n\r\n    if (typeof label !== \"string\") {\r\n      throw TypeError(\r\n        `label must be of type string, received ${typeof label}: ${label}`\r\n      );\r\n    }\r\n\r\n    // Do not allow structures without name\r\n    if (label === \"\") {\r\n      window.showWarningSnackbar(\"Please name the structure before adding it\");\r\n      return;\r\n    }\r\n\r\n    setStructures(\r\n      insertStructure(\r\n        new Structure(\r\n          newStructureId(structures),\r\n          label,\r\n          true,\r\n          getUnusedColor(structures),\r\n          true,\r\n          null,\r\n          0,\r\n          false,\r\n          true,\r\n          false,\r\n          0,\r\n          0\r\n        ),\r\n        structures\r\n      )\r\n    );\r\n    setNewStructureName(\"\");\r\n  };\r\n\r\n  return (\r\n    <Grid sx={{ ...other.style, ...other.sx, ...styles.root }}>\r\n      {!isLocked && (\r\n        <Grid sx={styles.structureButtons}>\r\n          <Typography\r\n            variant=\"h6\"\r\n            sx={{ padding: \"8px 0 0 20px\" }}\r\n          >{`Structures (${structures.length})`}</Typography>\r\n          <Tooltip\r\n            disableInteractive\r\n            title={`Delete all annotations of ${\r\n              selectedStructure ? selectedStructure.label : \"selected structure\"\r\n            }`}\r\n          >\r\n            <IconButton\r\n              onClick={() => {\r\n                if (selectedStructure) {\r\n                  triggerAction(selectedStructure, AnnotationAction.DeleteAll);\r\n                } else {\r\n                  window.showWarningSnackbar(\"Please select structure first.\");\r\n                }\r\n              }}\r\n            >\r\n              <Delete />\r\n            </IconButton>\r\n          </Tooltip>\r\n          <Tooltip\r\n            disableInteractive\r\n            title={\r\n              allRoisHidden > 0\r\n                ? \"Hide all structures [Shift] + [R]\"\r\n                : \"Show all structures [Shift] + [R]\"\r\n            }\r\n          >\r\n            <IconButton onClick={toggleAllRoisHidden}>\r\n              {allRoisHidden ? <VisibilityOff /> : <Visibility />}\r\n            </IconButton>\r\n          </Tooltip>\r\n          <Tooltip disableInteractive title=\"Export structure tree\">\r\n            <IconButton\r\n              onClick={() =>\r\n                exportStructures(user.fullName, project, structures)\r\n              }\r\n            >\r\n              <GetApp />\r\n            </IconButton>\r\n          </Tooltip>\r\n          <Tooltip disableInteractive title={\"Import structure tree\"}>\r\n            <IconButton\r\n              onClick={() =>\r\n                importStructures(\r\n                  newStructureId(structures),\r\n                  (newStructs) => {\r\n                    setStructures(newStructs);\r\n                    window.showSuccessSnackbar(\r\n                      `Successfully imported ${newStructs.length} structures`\r\n                    );\r\n                  },\r\n                  (err) => window.showErrorSnackbar(err)\r\n                )\r\n              }\r\n            >\r\n              <Publish />\r\n            </IconButton>\r\n          </Tooltip>\r\n        </Grid>\r\n      )}\r\n      <TreeView\r\n        sx={styles.structureList}\r\n        defaultCollapseIcon={<ExpandMoreIcon />}\r\n        defaultExpandIcon={<ChevronRightIcon />}\r\n        expanded={structures\r\n          .filter((s) => s.isUnfolded)\r\n          .map((s) => s.id.toString())}\r\n        onNodeToggle={(_, expandedNodeIds) => {\r\n          let newStructures = structures.map((s) => {\r\n            s.isUnfolded = expandedNodeIds.includes(s.id.toString())\r\n              ? true\r\n              : false;\r\n            return s;\r\n          });\r\n          setStructures(newStructures);\r\n        }}\r\n      >\r\n        {structures\r\n          .filter((s) => s instanceof Structure && s.parentId === null)\r\n          .map((structure) => (\r\n            <RecursiveStructureItem\r\n              {...other}\r\n              key={structure.id}\r\n              structure={structure}\r\n              structures={structures}\r\n              setStructures={(structures) => setStructures(structures)}\r\n              selectedStructure={selectedStructure}\r\n              setSelectedStructure={setSelectedStructure}\r\n              triggerAction={triggerAction}\r\n              isLocked={isLocked}\r\n              isInSelectionMode={isInSelectionMode}\r\n              updateChoosability={() => updateStructureSelectability()}\r\n              trainingSettings={trainingSettings}\r\n              setTrainingSettings={setTrainingSettings}\r\n            />\r\n          ))}\r\n      </TreeView>\r\n      {!isLocked && (\r\n        <Grid sx={styles.newStructure}>\r\n          <Tooltip disableInteractive title=\"Add new structure\">\r\n            <IconButton\r\n              onClick={() => addNewStructure(newStructureName)}\r\n              size=\"large\"\r\n            >\r\n              <Add />\r\n            </IconButton>\r\n          </Tooltip>\r\n          <TextField\r\n            variant=\"standard\"\r\n            name=\"Textfield\"\r\n            value={newStructureName}\r\n            helperText={\r\n              \"Add new structure to bottom of list by entering its name\"\r\n            }\r\n            onChange={(e) => setNewStructureName(e.target.value)}\r\n            onKeyDown={(e) => {\r\n              if (e.key === \"Enter\") {\r\n                addNewStructure(newStructureName);\r\n              }\r\n            }}\r\n          />\r\n        </Grid>\r\n      )}\r\n    </Grid>\r\n  );\r\n}\r\n\r\nStructureTree.propTypes = {\r\n  project: PropTypes.object.isRequired,\r\n  user: PropTypes.object,\r\n  structures: PropTypes.array,\r\n  setStructures: PropTypes.func,\r\n  selectedStructure: PropTypes.instanceOf(Structure),\r\n  setSelectedStructure: PropTypes.func,\r\n  triggerAction: PropTypes.func,\r\n  isLocked: PropTypes.bool,\r\n  allowChoices: PropTypes.bool,\r\n  structureSelectability: PropTypes.oneOfType([PropTypes.bool, PropTypes.func]),\r\n  allStructuresEnabled: PropTypes.bool,\r\n  trainingSettings: PropTypes.object,\r\n  setTrainingSettings: PropTypes.func,\r\n};\r\n","// Framework imports\r\nimport React from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n// import { styled } from \"@mui/system\";\r\n\r\nimport { AudioViewerContext } from \"../AudioViewer\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n\r\nimport { Typography, Tooltip, IconButton, ListItemButton } from \"@mui/material\";\r\n\r\n// Icons\r\nimport RemoveCircleIcon from \"@mui/icons-material/RemoveCircle\";\r\nimport AddCircleIcon from \"@mui/icons-material/AddCircle\";\r\n\r\n// define the component's styling\r\nconst styles = () => ({\r\n  previewImageContainer: {\r\n    position: \"relative\",\r\n  },\r\n  importText: {\r\n    padding: 5,\r\n    fontWeight: \"bold\",\r\n    lineHeight: \"45px\",\r\n    display: \"inline-block\",\r\n  },\r\n  lineThrough1: {\r\n    position: \"absolute\",\r\n    top: 0,\r\n    left: 0,\r\n    width: \"100%\",\r\n    height: \"100%\",\r\n    pointerEvents: \"none\",\r\n    background:\r\n      \"linear-gradient(to bottom right, transparent calc(50% - 1px), red, transparent calc(50% + 1px) )\",\r\n  },\r\n  lineThrough2: {\r\n    position: \"absolute\",\r\n    top: 0,\r\n    left: 0,\r\n    width: \"100%\",\r\n    height: \"100%\",\r\n    pointerEvents: \"none\",\r\n    background:\r\n      \"linear-gradient(to top right, transparent calc(50% - 1px), red, transparent calc(50% + 1px) )\",\r\n  },\r\n  sceneItem: {\r\n    position: \"relative\",\r\n    display: \"inline-block\",\r\n    width: \"fit-content\",\r\n    paddingLeft: \"5px\",\r\n    objectFit: \"contain\",\r\n    // border: \"1px solid #ccc!important\",\r\n    cursor: \"pointer\",\r\n    \"& button\": {\r\n      padding: 0,\r\n      visibility: \"hidden\",\r\n      zIndex: 999999,\r\n      width: 0,\r\n      height: 0,\r\n    },\r\n    \"&:hover\": {\r\n      boxShadow: \"1px 1px 2px #333\",\r\n      \"& button\": {\r\n        visibility: \"visible\",\r\n        zIndex: 999999999999,\r\n      },\r\n    },\r\n  },\r\n  excludeButton: {\r\n    position: \"absolute\",\r\n    top: 0,\r\n    right: 0,\r\n  },\r\n});\r\n\r\n/**\r\n * Displays all Audio Files of the project.\r\n */\r\nconst AudioFileTree = (props) => {\r\n  const { classes } = props;\r\n  const AudioViewer = React.useContext(AudioViewerContext);\r\n  const { selectedFile } = AudioViewer;\r\n  const { files } = AudioViewer.project;\r\n  const selectedFileIdx =\r\n    files && selectedFile\r\n      ? files.findIndex((file) => file.id === selectedFile.id)\r\n      : 0;\r\n\r\n  const onExcludeAudioFileToggle = (e, file) => {\r\n    file.excluded = !file.excluded;\r\n    AudioViewer.updateFiles(files);\r\n    e.preventDefault();\r\n    e.stopPropagation();\r\n  };\r\n\r\n  const onSelectFile = (file) => {\r\n    AudioViewer.updateSelectedFile(file);\r\n  };\r\n\r\n  const hasNotExcludedScenes = () => {\r\n    const result = files.some((file) => !file.excluded);\r\n    return result;\r\n  };\r\n\r\n  const onExcludeFilesToggle = () => {\r\n    const exludedValue = hasNotExcludedScenes();\r\n    AudioViewer.updateFiles(\r\n      files.map((file) => {\r\n        file.excluded = exludedValue;\r\n        return file;\r\n      })\r\n    );\r\n  };\r\n\r\n  return (\r\n    <div style={{ height: \"100%\", overflow: \"auto\" }}>\r\n      {files && [\r\n        <div\r\n          key=\"AudioHeadline1\"\r\n          style={{\r\n            position: \"relative\",\r\n            display: \"grid\",\r\n            gridTemplateColumns: \"1fr auto\",\r\n          }}\r\n        >\r\n          <Typography\r\n            variant=\"h6\"\r\n            sx={{ fontSize: \"18px\", padding: \"8px 20px 0\" }}\r\n          >\r\n            {\"Files (\" + files.length + \"):\"}\r\n          </Typography>\r\n          <Tooltip\r\n            disableInteractive\r\n            title={\r\n              hasNotExcludedScenes(files)\r\n                ? \"Exclude all from analysis\"\r\n                : \"Include all to analysis\"\r\n            }\r\n          >\r\n            <IconButton\r\n              className={classes.excludeButton}\r\n              style={{ color: \"#666\", marginRight: 16 }}\r\n              size=\"small\"\r\n              onClick={() => {\r\n                const toExclude = hasNotExcludedScenes(files);\r\n                onExcludeFilesToggle(\r\n                  files.filter((file) => file.excludeScene !== toExclude),\r\n                  toExclude\r\n                );\r\n              }}\r\n            >\r\n              {hasNotExcludedScenes(files) ? (\r\n                <RemoveCircleIcon />\r\n              ) : (\r\n                <AddCircleIcon />\r\n              )}\r\n            </IconButton>\r\n          </Tooltip>\r\n        </div>,\r\n        <div key=\"FileCheckboxesList2\">\r\n          {files.map((file, fileIdx) => (\r\n            // <div key={file.fileName}>\r\n            //   <FormControlLabel\r\n            //     label={file.fileName}\r\n            //     control={\r\n            //       <Checkbox\r\n            //         checked={file.visible}\r\n            //         //   indeterminate={checked[0] !== checked[1]}\r\n            //         onChange={(e) => {\r\n            //           file.visible = e.target.checked;\r\n            //           AudioViewer.updateFiles(files);\r\n            //         }}\r\n            //       />\r\n            //     }\r\n            //   />\r\n            // </div>\r\n            <ListItemButton\r\n              selected={fileIdx === selectedFileIdx}\r\n              key={file.fileName}\r\n              // className={classes.sceneItem}\r\n              style={{\r\n                display: \"grid\",\r\n                gridTemplateColumns: \"1fr auto\",\r\n                width: \"100%\",\r\n              }}\r\n            >\r\n              <div\r\n                className={classes.previewImageContainer}\r\n                onClick={() => onSelectFile(file)}\r\n              >\r\n                <div>\r\n                  <div className={classes.importText}>{file.fileName}</div>\r\n                </div>\r\n                <div\r\n                  style={{\r\n                    display: !file.excluded ? \"none\" : \"block\",\r\n                  }}\r\n                  className={classes.lineThrough1}\r\n                ></div>\r\n                <div\r\n                  style={{\r\n                    display: !file.excluded ? \"none\" : \"block\",\r\n                  }}\r\n                  className={classes.lineThrough2}\r\n                ></div>\r\n              </div>\r\n              <Tooltip\r\n                disableInteractive\r\n                placement=\"top\"\r\n                title={\r\n                  !file.excluded\r\n                    ? \"Exclude from analysis\"\r\n                    : \"Include in analysis\"\r\n                }\r\n              >\r\n                <IconButton\r\n                  // className={classes.excludeButton}\r\n                  style={{ color: \"#666\" }}\r\n                  size=\"small\"\r\n                  onClick={(e) => onExcludeAudioFileToggle(e, file)}\r\n                  //   onClick={() =>\r\n                  //     onExcludeFilesToggle([file.visilbe], !sceneFile.excludeScene)\r\n                  //   }\r\n                >\r\n                  {file.excluded ? <AddCircleIcon /> : <RemoveCircleIcon />}\r\n                </IconButton>\r\n              </Tooltip>\r\n            </ListItemButton>\r\n          ))}\r\n        </div>,\r\n      ]}\r\n    </div>\r\n  );\r\n};\r\n\r\nAudioFileTree.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n};\r\n\r\nexport default withStyles(styles)(AudioFileTree);\r\n","// Copyright HS Analysis GmbH, 2023\r\n// Author: Valentin Haas\r\n\r\n// HSA imports\r\nimport { isInt } from \"../utils/Utils\";\r\nimport Structure from \"./Structure\";\r\n\r\n// #region Option sets for the AI training\r\n\r\n// Shared data structures for the AI training\r\n// Keep in sync with:\r\n// Source\\HSA-KIT\\Models\\AITrainingSettings.cs\r\n// Source\\HSA-KIT\\modules\\hsa\\core\\ai\\models.py\r\n// Source\\HSA-KIT\\ClientApp\\src\\common\\components\\AITrainingSettings.jsx\r\n\r\n/**\r\n * All principle dataset creation approaches.\r\n */\r\nexport const DatasetApproach = Object.freeze({\r\n  ImageFileBased: 0,\r\n  ImageObjectBased: 1,\r\n  ImageSlidingWindow: 2,\r\n  AudioFileBased: 10,\r\n  AudioSlidingWindow: 11,\r\n});\r\n\r\n/**\r\n * Readable names for the principle dataset creation approaches.\r\n */\r\nexport const DatasetApproachNames = Object.freeze({\r\n  [DatasetApproach.ImageFileBased]: \"File Based\",\r\n  [DatasetApproach.ImageObjectBased]: \"Object Based\",\r\n  [DatasetApproach.ImageSlidingWindow]: \"Sliding Window\",\r\n  [DatasetApproach.AudioFileBased]: \"File Based\",\r\n  [DatasetApproach.AudioSlidingWindow]: \"Sliding Window\",\r\n});\r\n\r\n/**\r\n * Abbreviations for the principle dataset creation approaches.\r\n */\r\nexport const DatasetApproachShort = Object.freeze({\r\n  [DatasetApproach.ImageFileBased]: \"i-fb\",\r\n  [DatasetApproach.ImageObjectBased]: \"i-ob\",\r\n  [DatasetApproach.ImageSlidingWindow]: \"i-sw\",\r\n  [DatasetApproach.AudioFileBased]: \"a-fb\",\r\n  [DatasetApproach.AudioSlidingWindow]: \"a-sw\",\r\n});\r\n\r\n/**\r\n * All training model types.\r\n */\r\nexport const DatasetType = Object.freeze({\r\n  ImageClassification: 0,\r\n  ImageObjectDetection: 1,\r\n  ImageSegmentation: 2,\r\n  ImageInstanceSegmentation: 3,\r\n  AudioClassification: 10,\r\n  AudioSequenceDetection: 11,\r\n  AudioSequenceSegmentation: 12,\r\n  AudioSequenceInstanceSegmentation: 13,\r\n});\r\n\r\n/**\r\n * Readable names for the training model types.\r\n */\r\nexport const DatasetTypeNames = Object.freeze({\r\n  [DatasetType.ImageClassification]: \"Classification\",\r\n  [DatasetType.ImageObjectDetection]: \"Object Detection\",\r\n  [DatasetType.ImageSegmentation]: \"Segmentation\",\r\n  [DatasetType.ImageInstanceSegmentation]: \"Instance Segmentation\",\r\n  [DatasetType.AudioClassification]: \"Classification\",\r\n  [DatasetType.AudioSequenceDetection]: \"Object Detection\",\r\n  [DatasetType.AudioSequenceSegmentation]: \"Segmentation\",\r\n  [DatasetType.AudioSequenceInstanceSegmentation]: \"Instance Segmentation\",\r\n});\r\n\r\n/**\r\n * Abbreviations for the training model types.\r\n */\r\nexport const DatasetTypeShort = Object.freeze({\r\n  [DatasetType.ImageClassification]: \"i-cl\",\r\n  [DatasetType.ImageObjectDetection]: \"i-od\",\r\n  [DatasetType.ImageSegmentation]: \"i-seg\",\r\n  [DatasetType.ImageInstanceSegmentation]: \"i-iseg\",\r\n  [DatasetType.AudioClassification]: \"a-cl\",\r\n  [DatasetType.AudioSequenceDetection]: \"a-sd\",\r\n  [DatasetType.AudioSequenceSegmentation]: \"a-seg\",\r\n  [DatasetType.AudioSequenceInstanceSegmentation]: \"a-iseg\",\r\n});\r\n\r\n/**\r\n * A collection of all image dataset types.\r\n */\r\nexport const ImageDatasetTypes = [\r\n  DatasetType.ImageClassification,\r\n  DatasetType.ImageObjectDetection,\r\n  DatasetType.ImageSegmentation,\r\n  DatasetType.ImageInstanceSegmentation,\r\n];\r\n\r\n/**\r\n * A collection of all audio dataset types.\r\n */\r\nexport const AudioDatasetTypes = [\r\n  DatasetType.AudioClassification,\r\n  DatasetType.AudioSequenceDetection,\r\n  DatasetType.AudioSequenceSegmentation,\r\n  DatasetType.AudioSequenceInstanceSegmentation,\r\n];\r\n\r\n/**\r\n * A collection of all image dataset approaches.\r\n */\r\nexport const ImageDatasetApproaches = [\r\n  DatasetApproach.ImageFileBased,\r\n  DatasetApproach.ImageObjectBased,\r\n  DatasetApproach.ImageSlidingWindow,\r\n];\r\n\r\n/**\r\n * A collection of all audio dataset approaches.\r\n */\r\nexport const AudioDatasetApproaches = [\r\n  DatasetApproach.AudioFileBased,\r\n  DatasetApproach.AudioSlidingWindow,\r\n];\r\n\r\n/**\r\n * All principle training data types.\r\n */\r\nexport const TrainingDataTypes = Object.freeze({\r\n  Image: 0,\r\n  Audio: 1,\r\n});\r\n\r\n/**\r\n * Mapping of training data types to project types.\r\n */\r\nconst _trainingDataTypebyModuleName = Object.freeze({\r\n  AudioAnnotator: TrainingDataTypes.Audio,\r\n});\r\n\r\n/**\r\n * Returns the training data type for a given module.\r\n * @param {string} projectType The name of the module currently loaded to get the training data type for.\r\n * @returns {TrainingDataTypes} The training data type for the given module. Defaults to trainingDataTypes.Image.\r\n */\r\nexport const trainingDataTypebyModuleName = (projectType = \"\") => {\r\n  return _trainingDataTypebyModuleName[projectType] || TrainingDataTypes.Image;\r\n};\r\n\r\n/**\r\n * All available metrics for training.\r\n */\r\nexport const Metrics = Object.freeze({\r\n  Accuracy: 0,\r\n});\r\nexport const MetricsNames = Object.freeze({\r\n  [Metrics.Accuracy]: \"Accuracy\",\r\n});\r\n\r\n/**\r\n * All available loss functions for training.\r\n */\r\nexport const LossFunction = Object.freeze({\r\n  CrossEntropy: 0,\r\n  Dice: 1,\r\n  CrossEntropyDice: 2,\r\n});\r\nexport const LossFunctionNames = Object.freeze({\r\n  [LossFunction.CrossEntropy]: \"Cross Entropy\",\r\n  [LossFunction.Dice]: \"Dice\",\r\n  [LossFunction.CrossEntropyDice]: \"Cross Entropy + Dice\",\r\n});\r\n\r\n/**\r\n * All available optimizers for training.\r\n */\r\nexport const Optimizer = Object.freeze({\r\n  Adam: 0,\r\n  AdamW: 1,\r\n  SGD: 2,\r\n});\r\nexport const OptimizerNames = Object.freeze({\r\n  [Optimizer.Adam]: \"Adam\",\r\n  [Optimizer.AdamW]: \"AdamW\",\r\n  [Optimizer.SGD]: \"SGD\",\r\n});\r\n\r\n// #endregion\r\n\r\n// region Default values\r\nconst _DefaultDatasetTypeMappings = Object.freeze({\r\n  AudioAnnotator: DatasetType.AudioSequenceDetection,\r\n});\r\n\r\n/**\r\n * Get a default model type for a given project type.\r\n * @param {string} projectType The type of the project to get the default model type for.\r\n * @returns {DatasetType} The default model type for the given project type.\r\n */\r\nexport const DefaultDatasetType = (projectType = \"\") => {\r\n  return (\r\n    _DefaultDatasetTypeMappings[projectType] ||\r\n    DatasetType.ImageInstanceSegmentation\r\n  );\r\n};\r\n\r\nconst _DefaultDatasetApproachMappings = Object.freeze({\r\n  AudioAnnotator: DatasetApproach.AudioFileBased,\r\n});\r\n\r\n/**\r\n * Get a default dataset approach for a given project type.\r\n * @param {string} projectType The type of the project to get the default dataset approach for.\r\n * @returns {DatasetApproach} The default dataset approach for the given project type.\r\n */\r\nexport const DefaultDatasetApproach = (projectType = \"\") => {\r\n  return (\r\n    _DefaultDatasetApproachMappings[projectType] ||\r\n    DatasetApproach.ImageSlidingWindow\r\n  );\r\n};\r\n\r\n// #endregion\r\n\r\n// #region Data structures for each individual settings page\r\n/**\r\n * All parameters of AI Training that are not model specific.\r\n * @param {number} epochs Number of epochs to train.\r\n * @param {number} earlyStopping Number of epochs to wait for early stopping.\r\n * @param {number} batchSize Batch size for training.\r\n * @param {number[]} metrics Metrics to use for training.\r\n * @param {string[]} lossFunctions Loss functions to use for training.\r\n * @param {string} optimizer Optimizer to use for training.\r\n * @param {number} learningRate Learning rate to use for training.\r\n */\r\nexport class TrainingParameters {\r\n  constructor({\r\n    epochs = 1,\r\n    earlyStopping = 500,\r\n    batchSize = 2,\r\n    metrics = [Metrics.Accuracy],\r\n    lossFunctions = [LossFunction.CrossEntropy, LossFunction.Dice],\r\n    optimizer = Optimizer.AdamW,\r\n    learningRate = 1e-4,\r\n  } = {}) {\r\n    // Input validation\r\n    if (!isInt(epochs) || epochs <= 0)\r\n      throw TypeError(\r\n        `epochs must be of type integer > 0, received ${typeof epochs}: ${epochs}`\r\n      );\r\n    if (!isInt(earlyStopping) || earlyStopping < 0)\r\n      throw TypeError(\r\n        `earlyStopping must be of type integer >= 0, received ${typeof earlyStopping}: ${earlyStopping}`\r\n      );\r\n    if (!isInt(batchSize) || batchSize < 1)\r\n      throw TypeError(\r\n        `batchSize must be of type integer >= 1, received ${typeof batchSize}: ${batchSize}`\r\n      );\r\n    if (!Array.isArray(metrics) || metrics.length === 0)\r\n      throw TypeError(\r\n        `metrics must be of type array with at least one element, received ${typeof metrics}: ${metrics}`\r\n      );\r\n    for (const metric of metrics) {\r\n      if (!isInt(metric) || !Object.values(Metrics).includes(metric))\r\n        throw TypeError(\r\n          `metrics must be of type array with elements of type Metrics with one of the following values: ${Object.values(\r\n            Metrics\r\n          )}, received ${typeof metric}: ${metric}`\r\n        );\r\n    }\r\n\r\n    if (!Array.isArray(lossFunctions) || lossFunctions.length === 0)\r\n      throw TypeError(\r\n        `lossFunctions must be of type array with at least one element, received ${typeof lossFunctions}: ${lossFunctions}`\r\n      );\r\n    for (const lossFunction of lossFunctions) {\r\n      if (\r\n        !isInt(lossFunction) ||\r\n        !Object.values(LossFunction).includes(lossFunction)\r\n      )\r\n        throw TypeError(\r\n          `lossFunctions must be of type array with elements of type LossFunction with one of the following values: ${Object.values(\r\n            LossFunction\r\n          )}, received ${typeof lossFunction}: ${lossFunction}`\r\n        );\r\n    }\r\n\r\n    if (!isInt(optimizer) || !Object.values(Optimizer).includes(optimizer))\r\n      throw TypeError(\r\n        `optimizer must be of type Optimizer with one of the following values: ${Object.values(\r\n          Optimizer\r\n        )}, received ${typeof optimizer}: ${optimizer}`\r\n      );\r\n    if (typeof learningRate !== \"number\" || learningRate <= 0)\r\n      throw TypeError(\r\n        `learningRate must be of type number > 0, received ${typeof learningRate}: ${learningRate}`\r\n      );\r\n\r\n    this.epochs = epochs;\r\n    this.earlyStopping = earlyStopping;\r\n    this.batchSize = batchSize;\r\n    this.metrics = metrics;\r\n    this.lossFunctions = lossFunctions;\r\n    this.optimizer = optimizer;\r\n    this.learningRate = learningRate;\r\n  }\r\n}\r\n\r\n/**\r\n * All meta data of an AI Training.\r\n * @param {string} name Name of the AI Model.\r\n * @param {string} version Version of the AI Model.\r\n * @param {string} description Description of the AI Model.\r\n * @param {boolean} isNewModel Whether the model is new or not.\r\n */\r\nexport class ModelMetaData {\r\n  constructor({\r\n    name = \"\",\r\n    version = \"\",\r\n    description = \"\",\r\n    isNewModel = true,\r\n  } = {}) {\r\n    if (typeof name !== \"string\")\r\n      throw TypeError(\r\n        `name must be of type string, received ${typeof name}: ${name}`\r\n      );\r\n    if (typeof version !== \"string\")\r\n      throw TypeError(\r\n        `modelVersion must be of type string, received ${typeof version}: ${version}`\r\n      );\r\n    if (typeof description !== \"string\")\r\n      throw TypeError(\r\n        `modelDescription must be of type string, received ${typeof description}: ${description}`\r\n      );\r\n    if (typeof isNewModel !== \"boolean\")\r\n      throw TypeError(\r\n        `isNewModel must be of type boolean, received ${typeof isNewModel}: ${isNewModel}`\r\n      );\r\n    this.name = name;\r\n    this.version = version;\r\n    this.description = description;\r\n    this.isNewModel = isNewModel;\r\n  }\r\n}\r\n\r\n/**\r\n * All dataset specific parameters of an AI Training.\r\n * @param {DatasetApproach} datasetApproach Approach to create the dataset. Must be one of the values of DatasetApproach. Default: ImageFileBased.\r\n * @param {DatasetType} datasetType Type of the dataset used. Must be one of the values of DatasetType. Default: ImageClassification.\r\n * @param {boolean} datasetOnly Whether only the dataset should be created or not, without training. Default: false.\r\n * @param {boolean} useExistingDataset Whether an existing dataset should be used or not for training. Default: false.\r\n */\r\nexport class DatasetParameters {\r\n  constructor({\r\n    datasetApproach = DatasetApproach.ImageSlidingWindow,\r\n    datasetType = DatasetType.ImageClassification,\r\n    datasetOnly = false,\r\n    useExistingDataset = false,\r\n  } = {}) {\r\n    if (\r\n      !isInt(datasetApproach) ||\r\n      !Object.values(DatasetApproach).includes(datasetApproach)\r\n    )\r\n      throw TypeError(\r\n        `datasetApproach must be of type DatasetApproach with one of the following values: ${Object.values(\r\n          DatasetApproach\r\n        )}, received ${typeof datasetApproach}: ${datasetApproach}`\r\n      );\r\n    if (\r\n      !isInt(datasetType) ||\r\n      !Object.values(DatasetType).includes(datasetType)\r\n    )\r\n      throw TypeError(\r\n        `datasetType must be of type DatasetType with one of the following values: ${Object.values(\r\n          DatasetType\r\n        )}, received ${typeof datasetType}: ${datasetType}`\r\n      );\r\n    if (typeof datasetOnly !== \"boolean\")\r\n      throw TypeError(\r\n        `datasetOnly must be of type boolean, received ${typeof datasetOnly}: ${datasetOnly}`\r\n      );\r\n    if (typeof useExistingDataset !== \"boolean\")\r\n      throw TypeError(\r\n        `useExistingDataset must be of type boolean, received ${typeof useExistingDataset}: ${useExistingDataset}`\r\n      );\r\n    this.datasetApproach = datasetApproach;\r\n    this.datasetType = datasetType;\r\n    this.datasetOnly = datasetOnly;\r\n    this.useExistingDataset = useExistingDataset;\r\n  }\r\n}\r\n\r\n/**\r\n * General class for all dataset specific parameters of an AI Training.\r\n */\r\nexport class DatasetMeta {\r\n  constructor() {}\r\n}\r\n\r\n/**\r\n * All model specific parameters of an image model AI Training.\r\n * @param {DatasetType} datasetType Type of the dataset used. Must be one of the values of DatasetType. Default: ImageClassification.\r\n * @param {number} inputChannels Number of input channels. Can be 1 for grayscale images, 3 for RGB images, or more for multispectral images.\r\n * @param {Array} fluorescenceChannels List of fluorescence channels. Default: [].\r\n * @param {number} spatialDims Number of spatial dimensions. Can be 2 for 2D images or 3 for 3D images.\r\n * @param {number} imageWidth Width of an dataset image.\r\n * @param {number} imageHeight Height of an dataset image.\r\n * @param {number} numberOfClasses Number of classes to predict.\r\n */\r\nexport class ImageDatasetMeta extends DatasetMeta {\r\n  constructor({\r\n    datasetType = DatasetType.ImageClassification,\r\n    inputChannels = 3,\r\n    fluorescenceChannels = [],\r\n    spatialDims = 2,\r\n    imageWidth = 512,\r\n    imageHeight = 512,\r\n    numberOfClasses = 2,\r\n    pyramidLevel = -1,\r\n  } = {}) {\r\n    super();\r\n\r\n    // Input validation\r\n    if (\r\n      !isInt(datasetType) ||\r\n      !Object.values(DatasetType).includes(datasetType)\r\n    )\r\n      throw TypeError(\r\n        `datasetType must be of type DatasetType with one of the following values: ${Object.values(\r\n          DatasetType\r\n        )}, received ${typeof datasetType}: ${datasetType}`\r\n      );\r\n    if (!isInt(inputChannels) || inputChannels < 1)\r\n      throw TypeError(\r\n        `inputChannels must be of type integer >= 1, received ${typeof inputChannels}: ${inputChannels}`\r\n      );\r\n    if (!Array.isArray(fluorescenceChannels))\r\n      throw TypeError(\r\n        `fluorescenceChannels must be of type array, received ${typeof fluorescenceChannels}: ${fluorescenceChannels}`\r\n      );\r\n    if (!isInt(spatialDims) || spatialDims < 2 || spatialDims > 3)\r\n      throw TypeError(\r\n        `spatialDims must be of type integer >= 2 and <= 3, received ${typeof spatialDims}: ${spatialDims}`\r\n      );\r\n    if (!isInt(imageWidth) || imageWidth < 1)\r\n      throw TypeError(\r\n        `imageWidth must be of type integer >= 1, received ${typeof imageWidth}: ${imageWidth}`\r\n      );\r\n    if (!isInt(imageHeight) || imageHeight < 1)\r\n      throw TypeError(\r\n        `imageHeight must be of type integer >= 1, received ${typeof imageHeight}: ${imageHeight}`\r\n      );\r\n    if (!isInt(numberOfClasses) || numberOfClasses < 2)\r\n      throw TypeError(\r\n        `numberOfClasses must be of type integer >= 2, received ${typeof numberOfClasses}: ${numberOfClasses}`\r\n      );\r\n    if (!isInt(pyramidLevel) || pyramidLevel < -1)\r\n      throw TypeError(\r\n        `pyramidLevel must be of type integer >= -1, received ${typeof pyramidLevel}: ${pyramidLevel}`\r\n      );\r\n\r\n    // Set parameters\r\n    this.datasetType = datasetType;\r\n    this.inputChannels = inputChannels;\r\n    this.fluorescenceChannels = fluorescenceChannels;\r\n    this.spatialDims = spatialDims;\r\n    this.imageWidth = imageWidth;\r\n    this.imageHeight = imageHeight;\r\n    this.numberOfClasses = numberOfClasses;\r\n    this.pyramidLevel = pyramidLevel;\r\n  }\r\n}\r\n\r\n/**\r\n * All model specific parameters of an audio model AI Training.\r\n * @param {DatasetType} datasetType Type of the dataset used. Must be one of the values of DatasetType. Default: AudioClassification.\r\n * @param {number} sequenceLengthSeconds Length of an audio sequence in seconds. 0 for full length. Default: 0.\r\n * @param {number} sequenceOverlapSeconds Overlap of audio sequences in seconds. Negative values for gaps between sequences. Default: 0.\r\n * @param {number} numberOfClasses Number of classes to predict. Default: 1.\r\n */\r\nexport class AudioDatasetMeta extends DatasetMeta {\r\n  constructor({\r\n    datasetType = DatasetType.AudioClassification,\r\n    sequenceLengthSeconds = 0,\r\n    sequenceOverlapSeconds = 0,\r\n    numberOfClasses = 1,\r\n  } = {}) {\r\n    super();\r\n\r\n    // Input validation\r\n    if (\r\n      !isInt(datasetType) ||\r\n      !Object.values(DatasetType).includes(datasetType)\r\n    )\r\n      throw TypeError(\r\n        `datasetType must be of type DatasetType with one of the following values: ${Object.values(\r\n          DatasetType\r\n        )}, received ${typeof datasetType}: ${datasetType}`\r\n      );\r\n    if (typeof sequenceLengthSeconds !== \"number\" || sequenceLengthSeconds < 0)\r\n      throw TypeError(\r\n        `sequenceLengthSeconds must be of type number >= 0, received ${typeof sequenceLengthSeconds}: ${sequenceLengthSeconds}`\r\n      );\r\n    if (typeof sequenceOverlapSeconds !== \"number\")\r\n      throw TypeError(\r\n        `sequenceOverlapSeconds must be of type number, received ${typeof sequenceOverlapSeconds}: ${sequenceOverlapSeconds}`\r\n      );\r\n\r\n    if (!isInt(numberOfClasses) || numberOfClasses < 1)\r\n      throw TypeError(\r\n        `numberOfClasses must be of type integer >= 1, received ${typeof numberOfClasses}: ${numberOfClasses}`\r\n      );\r\n\r\n    // Set parameters\r\n    this.datasetType = datasetType;\r\n    this.sequenceLengthSeconds = sequenceLengthSeconds;\r\n    this.sequenceOverlapSeconds = sequenceOverlapSeconds;\r\n    this.numberOfClasses = numberOfClasses;\r\n  }\r\n}\r\n\r\n/**\r\n * Mapping of model parameters to dataset types.\r\n */\r\nconst _ModelParameterMappping = Object.freeze({\r\n  [DatasetType.ImageClassification]: new ImageDatasetMeta(\r\n    DatasetType.ImageClassification\r\n  ),\r\n  [DatasetType.ImageObjectDetection]: new ImageDatasetMeta(\r\n    DatasetType.ImageObjectDetection\r\n  ),\r\n  [DatasetType.ImageSegmentation]: new ImageDatasetMeta(\r\n    DatasetType.ImageSegmentation\r\n  ),\r\n  [DatasetType.ImageInstanceSegmentation]: new ImageDatasetMeta(\r\n    DatasetType.ImageInstanceSegmentation\r\n  ),\r\n  [DatasetType.AudioClassification]: new AudioDatasetMeta(\r\n    DatasetType.AudioClassification\r\n  ),\r\n  [DatasetType.AudioSequenceDetection]: new AudioDatasetMeta(\r\n    DatasetType.AudioSequenceDetection\r\n  ),\r\n  [DatasetType.AudioSequenceSegmentation]: new AudioDatasetMeta(\r\n    DatasetType.AudioSequenceSegmentation\r\n  ),\r\n  [DatasetType.AudioSequenceInstanceSegmentation]: new AudioDatasetMeta(\r\n    DatasetType.AudioSequenceInstanceSegmentation\r\n  ),\r\n});\r\n\r\n/**\r\n * Returns the model parameters for a given dataset type.\r\n * @param {DatasetType} datasetType The type of the dataset to get the model parameters for.\r\n * @returns {DatasetMeta}\r\n */\r\nexport const getModelParameters = (datasetType) => {\r\n  return _ModelParameterMappping[datasetType] || new DatasetMeta();\r\n};\r\n\r\n// #endregion\r\n\r\n/**\r\n * All settings of an AI Training.\r\n * @param {Uuid} projectId ID of the project to train on.\r\n * @param {ModelMetaData} metaData Meta data of the AI Model.\r\n * @param {DatasetParameters} datasetParameters Dataset specific parameters of the AI Training.\r\n * @param {TrainingParameters} trainingParameters Training specific parameters of the AI Training.\r\n * @param {DatasetMeta} modelParameters Model specific parameters of the AI Training.\r\n * @param {Structure[]} structures Structures to train on.\r\n * @param {String} trainingStatus status of the AI Training.\r\n */\r\nexport default class AITrainingSettings {\r\n  constructor(\r\n    projectId,\r\n    projectType,\r\n    metaData = new ModelMetaData(),\r\n    datasetParameters = new DatasetParameters(),\r\n    trainingParameters = new TrainingParameters(),\r\n    modelParameters = new DatasetMeta(),\r\n    structures = []\r\n  ) {\r\n    // Input validation\r\n    // if (!isUuid(projectId))\r\n    //   throw TypeError(\r\n    //     `projectId must be of type uuid, received ${typeof projectId}: ${projectId}`\r\n    //   );\r\n    if (typeof projectType !== \"string\")\r\n      throw TypeError(\r\n        `projectType must be of type string, received ${typeof projectType}: ${projectType}`\r\n      );\r\n    if (!(metaData instanceof ModelMetaData))\r\n      throw TypeError(\r\n        `metaData must be of type ModelMetaData, received ${typeof metaData}: ${metaData}`\r\n      );\r\n    if (!(datasetParameters instanceof DatasetParameters))\r\n      throw TypeError(\r\n        `datasetParameters must be of type DatasetParameters, received ${typeof datasetParameters}: ${datasetParameters}`\r\n      );\r\n    if (!(trainingParameters instanceof TrainingParameters))\r\n      throw TypeError(\r\n        `trainingParameters must be of type TrainingParameters, received ${typeof trainingParameters}: ${trainingParameters}`\r\n      );\r\n    if (!(modelParameters instanceof DatasetMeta))\r\n      throw TypeError(\r\n        `modelParameters must be of type DatasetMeta, received ${typeof modelParameters}: ${modelParameters}`\r\n      );\r\n    if (!Array.isArray(structures))\r\n      throw TypeError(\r\n        `structures must be of type array, received ${typeof structures}: ${structures}`\r\n      );\r\n\r\n    for (const structure of structures) {\r\n      if (!(structure instanceof Structure))\r\n        throw TypeError(\r\n          `structures must be of type array with elements of type Structure, received ${typeof structure}: ${structure}`\r\n        );\r\n    }\r\n\r\n    // Set parameters\r\n    this.projectId = projectId;\r\n    this.projectType = projectType;\r\n    this.metaData = metaData;\r\n    this.datasetParameters = datasetParameters;\r\n    this.trainingParameters = trainingParameters;\r\n    this.modelParameters = modelParameters;\r\n    this.structures = structures;\r\n  }\r\n}\r\n","// Copyright: HS Analysis GmbH, 2023\r\n// Author: Valentin Haas\r\n\r\n// Framework imports\r\nimport React, { useState } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\n// External packages\r\nimport { ValidatorForm } from \"react-material-ui-form-validator\";\r\nimport Button from \"@mui/material/Button\";\r\nimport Dialog from \"@mui/material/Dialog\";\r\nimport DialogContent from \"@mui/material/DialogContent\";\r\nimport DialogTitle from \"@mui/material/DialogTitle\";\r\nimport Stepper from \"@mui/material/Stepper\";\r\nimport Step from \"@mui/material/Step\";\r\nimport StepButton from \"@mui/material/StepButton\";\r\nimport MobileStepper from \"@mui/material/MobileStepper\";\r\nimport KeyboardArrowLeft from \"@mui/icons-material/KeyboardArrowLeft\";\r\nimport KeyboardArrowRight from \"@mui/icons-material/KeyboardArrowRight\";\r\n\r\n// HSA packages\r\n\r\nconst styles = {\r\n  dialog: {\r\n    overflowY: \"hidden\",\r\n    minHeight: \"100%\",\r\n    \"& .MuiPaperRoot\": {\r\n      maxWidth: \"none\",\r\n    },\r\n    \"& .MuiDialogContentRoot\": {\r\n      padding: 0,\r\n    },\r\n  },\r\n  dialogContent: {\r\n    padding: 0,\r\n  },\r\n  content: {\r\n    width: 900,\r\n    height: 500,\r\n    overflowY: \"auto\",\r\n  },\r\n  stepper: {\r\n    width: \"76%\",\r\n    left: \"12%\",\r\n    position: \"relative\",\r\n    marginBottom: \"-50px\",\r\n    paddingBottom: \"10px\",\r\n    marginTop: \"25px\",\r\n    background: \"#fafafa\",\r\n  },\r\n};\r\n\r\n/**\r\n * General dialog with a stepper and a form.\r\n * Takes an array of steps and displays them in the stepper.\r\n * The content of the steps is displayed in the form.\r\n * @param {boolean} isOpen Whether the dialog is open or not.\r\n * @param {function} setOpen Function to set the open state of the dialog.\r\n * @param {array} steps Array of steps to display in the dialog. Steps are objects with a title and content.\r\n * @param {function} onSubmit Async function to call when the form is completed and the submit button is pressed. In case of error, should return the page to jump to.\r\n * @param {string} submitMessage Optional. Message to display on the submit button. Default: \"Submit\"\r\n * @param {function} onNext Optional. Function to call when the next button is pressed. Called with the currently active step. Default: () => {}\r\n * @param {function} onBack Optional. Function to call when the back button is pressed. Called with the currently active step. Default: () => {}\r\n *\r\n * @returns {JSX.Element} A dialog with a stepper and a form.\r\n */\r\nexport default function StepperDialog(props) {\r\n  const {\r\n    isOpen,\r\n    setOpen,\r\n    steps = [],\r\n    onSubmit,\r\n    submitMessage = \"Submit\",\r\n    onNext = () => {},\r\n    onBack = () => {},\r\n    ...other\r\n  } = props;\r\n  const [activeStep, setActiveStep] = useState(0);\r\n\r\n  /**\r\n   * Continues to the next step. If the last step is reached, the onSubmit function is called.\r\n   * @returns {void}\r\n   */\r\n  const handleNext = async () => {\r\n    // If it has a validate function, validate the current step\r\n    if (\"validate\" in steps[activeStep]) {\r\n      const validated = await steps[activeStep].validate();\r\n      if (!validated) {\r\n        return;\r\n      }\r\n    }\r\n    if (activeStep === steps.length - 1) {\r\n      await onSubmit()\r\n        .then(() => {\r\n          setOpen(false);\r\n        })\r\n        .catch((pageToJumpTo) => {\r\n          if (pageToJumpTo !== null && pageToJumpTo !== undefined) {\r\n            setActiveStep(pageToJumpTo);\r\n          }\r\n        });\r\n      return;\r\n    }\r\n\r\n    onNext(activeStep);\r\n    setActiveStep((prevActiveStep) => prevActiveStep + 1);\r\n  };\r\n\r\n  /**\r\n   * Goes back to the previous step. If the first step is reached, nothing happens.\r\n   */\r\n  const handleBack = () => {\r\n    onBack(activeStep);\r\n    setActiveStep((prevActiveStep) => prevActiveStep - 1);\r\n  };\r\n\r\n  return (\r\n    <Dialog\r\n      open={isOpen === undefined ? false : isOpen}\r\n      onClose={() => setOpen(false)}\r\n      keepMounted\r\n      style={styles.dialog}\r\n      maxWidth=\"lg\"\r\n    >\r\n      <DialogContent>\r\n        <ValidatorForm onSubmit={handleNext}>\r\n          <DialogTitle>{steps[activeStep]?.title ?? \"\"}</DialogTitle>\r\n          <DialogContent style={{ ...styles.content, ...other.style }}>\r\n            {steps[activeStep]?.content ?? <>Fail</>}\r\n          </DialogContent>\r\n        </ValidatorForm>\r\n        <div style={{ background: \"#fafafa\" }}>\r\n          <Stepper\r\n            alternativeLabel\r\n            nonLinear\r\n            activeStep={activeStep}\r\n            sx={styles.stepper}\r\n          >\r\n            {steps.map((step, index) => {\r\n              const stepProps = {};\r\n              const buttonProps = {};\r\n              return (\r\n                <Step key={index} {...stepProps}>\r\n                  <StepButton\r\n                    onClick={async () => {\r\n                      // If it has a validate function, validate the current step\r\n                      if (\"validate\" in steps[activeStep]) {\r\n                        const validated = await steps[activeStep].validate();\r\n                        if (!validated) {\r\n                          return;\r\n                        }\r\n                      }\r\n                      setActiveStep(index);\r\n                    }}\r\n                    {...buttonProps}\r\n                  >\r\n                    {step.title ?? index}\r\n                  </StepButton>\r\n                </Step>\r\n              );\r\n            })}\r\n          </Stepper>\r\n\r\n          <MobileStepper\r\n            variant=\"dots\"\r\n            steps={steps.length}\r\n            position=\"static\"\r\n            activeStep={activeStep}\r\n            nextButton={\r\n              <Button size=\"small\" type=\"submit\" onClick={handleNext}>\r\n                {activeStep === steps.length - 1\r\n                  ? submitMessage\r\n                  : steps[activeStep]?.nextButton ?? \"Next\"}\r\n                <KeyboardArrowRight />\r\n              </Button>\r\n            }\r\n            backButton={\r\n              <Button\r\n                size=\"small\"\r\n                disabled={activeStep < 1}\r\n                onClick={handleBack}\r\n              >\r\n                <KeyboardArrowLeft />\r\n                {steps[activeStep]?.backButton ?? \"Back\"}\r\n              </Button>\r\n            }\r\n          />\r\n        </div>\r\n      </DialogContent>\r\n    </Dialog>\r\n  );\r\n}\r\n\r\nStepperDialog.propTypes = {\r\n  isOpen: PropTypes.bool,\r\n  setOpen: PropTypes.func.isRequired,\r\n  steps: PropTypes.array.isRequired,\r\n  onSubmit: PropTypes.func.isRequired,\r\n  submitMessage: PropTypes.string,\r\n  onNext: PropTypes.func,\r\n  onBack: PropTypes.func,\r\n};\r\n","// Copyright: HS Analysis GmbH, 2023\r\n// Author: Valentin Haas\r\n\r\n// Framework imports\r\nimport React, { useEffect, useState } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\n// External packages\r\nimport DialogContentText from \"@mui/material/DialogContentText\";\r\nimport Grid from \"@mui/material/Grid\";\r\nimport Button from \"@mui/material/Button\";\r\nimport TextField from \"@mui/material/TextField\";\r\nimport MenuItem from \"@mui/material/MenuItem\";\r\nimport Checkbox from \"@mui/material/Checkbox\";\r\nimport FormControlLabel from \"@mui/material/FormControlLabel\";\r\nimport { Typography } from \"@mui/material\";\r\n\r\n// HSA packages\r\nimport {\r\n  DatasetTypeShort,\r\n  DatasetApproachShort,\r\n} from \"../../../common/components/AITrainingSettings\";\r\n\r\nconst styles = {\r\n  modelSelButtonContainer: {\r\n    marginBottom: \"10px\",\r\n  },\r\n  modelSelButton: {\r\n    width: \"20%\",\r\n    marginRight: \"5px\",\r\n  },\r\n  existingModel: {\r\n    minWidth: 200,\r\n    marginRight: \"5px\",\r\n  },\r\n  existingVersion: {\r\n    minWidth: 100,\r\n  },\r\n};\r\n\r\n/**\r\n * Component to display the model metadata selection in the AI training dialog.\r\n * @param {AITrainingSettings} trainingSettings All settings for the AI training, as defined in the AITrainingSettings class.\r\n * @param {function} setTrainingSettings Function to set the training settings.\r\n * @param {array} existingAiModels Array of existing AI models.\r\n * @param {boolean} nameInUse Whether the model name is already used in the existing AI models.\r\n * @param {boolean} containsInvalidChar Whether the model name contains invalid characters.\r\n * @returns {JSX.Element} The component to display.\r\n */\r\nexport default function ModelMetaData(props) {\r\n  const {\r\n    trainingSettings,\r\n    setTrainingSettings,\r\n    existingAiModels,\r\n    nameInUse,\r\n    containsInvalidChar,\r\n  } = props;\r\n\r\n  const [useHSANamingFormat, setUseHSANamingFormat] = useState(true);\r\n  const [modelName, setModelName] = useState(\"\");\r\n\r\n  const modelVersion = trainingSettings.metaData.version;\r\n  const isNewModel = trainingSettings.metaData.isNewModel;\r\n\r\n  useEffect(() => {\r\n    let initialModelName = trainingSettings.structures[0].label;\r\n    if (useHSANamingFormat) {\r\n      trainingSettings.metaData.name = getHSAModelName(initialModelName);\r\n    } else {\r\n      trainingSettings.metaData.name = modelName;\r\n    }\r\n    setTrainingSettings(trainingSettings);\r\n    setModelName(initialModelName);\r\n  }, []);\r\n\r\n  /**\r\n   * Generates the HSA model name based on the user-defined model name and the training settings.\r\n   * @param {string} name The user-defined model name.\r\n   * @returns {string} The HSA model name, based on the user-defined model name and the training settings.\r\n   */\r\n  const getHSAModelName = (name) => {\r\n    const nameParts = [name];\r\n\r\n    if (trainingSettings.datasetParameters.datasetType) {\r\n      nameParts.push(\r\n        DatasetTypeShort[trainingSettings.datasetParameters.datasetType]\r\n      );\r\n    }\r\n\r\n    // Structure indices that are used for training\r\n    if (trainingSettings.structures.length > 0) {\r\n      nameParts.push(\r\n        trainingSettings.structures[0].label +\r\n          (trainingSettings.structures.length > 1\r\n            ? \"(\" + trainingSettings.structures.length.toString() + \")\"\r\n            : \"\")\r\n      );\r\n    }\r\n\r\n    // Dataset approach that is used for training\r\n    if (trainingSettings.datasetParameters.datasetApproach) {\r\n      nameParts.push(\r\n        DatasetApproachShort[trainingSettings.datasetParameters.datasetApproach]\r\n      );\r\n    }\r\n\r\n    // Image height that is used for training\r\n    if (trainingSettings.modelParameters.imageHeight) {\r\n      nameParts.push(`${trainingSettings.modelParameters.imageHeight}px`);\r\n    }\r\n\r\n    // Pyramid level that is used for training\r\n    if (trainingSettings.modelParameters.pyramidLevel) {\r\n      nameParts.push(trainingSettings.modelParameters.pyramidLevel.toString());\r\n    }\r\n\r\n    // Input channels that are used for training\r\n    if (trainingSettings.modelParameters.fluorescenceChannels) {\r\n      if (trainingSettings.modelParameters.fluorescenceChannels.length === 0) {\r\n        // Brightfield\r\n        nameParts.push(\r\n          trainingSettings.modelParameters.inputChannels === 3 ? \"rgb\" : \"grey\"\r\n        );\r\n      } else {\r\n        // Fluorescence\r\n        nameParts.push(\r\n          JSON.stringify(\r\n            trainingSettings.modelParameters.fluorescenceChannels\r\n          ).replace(/\"/g, \"\")\r\n        );\r\n      }\r\n    }\r\n\r\n    return nameParts.join(\"_\");\r\n  };\r\n\r\n  return (\r\n    <>\r\n      <DialogContentText\r\n        component={\"span\"}\r\n        style={{ paddingTop: \"0px\", marginBottom: \"20px\" }}\r\n      >\r\n        <div>\r\n          You can train a new model from scratch or start training based on an\r\n          existing model:\r\n          <ul>\r\n            <li>\r\n              <strong>Train from scratch:</strong> type in name of your model\r\n            </li>\r\n            <li>\r\n              <strong>Use existing model:</strong> select existing model name\r\n              and version\r\n            </li>\r\n          </ul>\r\n        </div>\r\n      </DialogContentText>\r\n      {/* Two buttons next to each other, choosing between new or existing */}\r\n      <Grid sx={styles.modelSelButtonContainer} container>\r\n        <Button\r\n          sx={styles.modelSelButton}\r\n          variant=\"contained\"\r\n          color={isNewModel && isNewModel !== null ? \"primary\" : \"secondary\"}\r\n          onClick={() => {\r\n            if (trainingSettings.metaData.isNewModel) return;\r\n            trainingSettings.metaData.name = \"\";\r\n            trainingSettings.metaData.version = \"\";\r\n            trainingSettings.metaData.isNewModel = true;\r\n            setTrainingSettings(trainingSettings);\r\n          }}\r\n        >\r\n          New Model\r\n        </Button>\r\n        <Button\r\n          sx={styles.modelSelButton}\r\n          variant=\"contained\"\r\n          color={isNewModel || isNewModel === null ? \"secondary\" : \"primary\"}\r\n          onClick={() => {\r\n            if (!trainingSettings.metaData.isNewModel) return;\r\n            trainingSettings.metaData.name = \"\";\r\n            trainingSettings.metaData.version = \"\";\r\n            trainingSettings.metaData.isNewModel = false;\r\n            setTrainingSettings(trainingSettings);\r\n          }}\r\n        >\r\n          Existing Model\r\n        </Button>\r\n      </Grid>\r\n      {/* If new model is selected, show text field to enter model name */}\r\n      {isNewModel && isNewModel !== null && (\r\n        <div>\r\n          <div>\r\n            <TextField\r\n              name=\"Textfield\"\r\n              label=\"Model Name\"\r\n              value={modelName}\r\n              error={modelName === \"\" || nameInUse || containsInvalidChar}\r\n              helperText={\r\n                modelName === \"\"\r\n                  ? \"Model name needed!\"\r\n                  : nameInUse\r\n                  ? \"Name already in use!\"\r\n                  : containsInvalidChar\r\n                  ? 'Must not use the following: & + # \\\\ / | ? : * \" < >'\r\n                  : \"\"\r\n              }\r\n              onChange={(e) => {\r\n                setModelName(e.target.value);\r\n                if (useHSANamingFormat) {\r\n                  trainingSettings.metaData.name = getHSAModelName(\r\n                    e.target.value\r\n                  );\r\n                } else {\r\n                  trainingSettings.metaData.name = e.target.value;\r\n                }\r\n                setTrainingSettings(trainingSettings);\r\n              }}\r\n            />\r\n          </div>\r\n          <div>\r\n            <FormControlLabel\r\n              control={\r\n                <Checkbox\r\n                  checked={useHSANamingFormat}\r\n                  onChange={(e) => {\r\n                    setUseHSANamingFormat(e.target.checked);\r\n                    if (e.target.checked) {\r\n                      trainingSettings.metaData.name =\r\n                        getHSAModelName(modelName);\r\n                    } else {\r\n                      trainingSettings.metaData.name = modelName;\r\n                    }\r\n                  }}\r\n                  color=\"primary\"\r\n                />\r\n              }\r\n              label=\"Using HSA naming convention\"\r\n            />\r\n          </div>\r\n          {useHSANamingFormat && (\r\n            <div>\r\n              <Typography>\r\n                {\"Model Name: \"}\r\n                <span style={{ fontWeight: \"bold\" }}>\r\n                  {trainingSettings.metaData.name.slice(0, modelName.length)}\r\n                </span>\r\n                {trainingSettings.metaData.name.slice(modelName.length)}\r\n              </Typography>\r\n            </div>\r\n          )}\r\n        </div>\r\n      )}\r\n      {/* If existing model is selected, show dropdown to select model name and version */}\r\n      {!trainingSettings.metaData.isNewModel &&\r\n        trainingSettings.metaData.isNewModel !== null && (\r\n          <>\r\n            <TextField\r\n              name=\"Textfield\"\r\n              select\r\n              label=\"Select Model\"\r\n              value={\r\n                existingAiModels.find((aiModel) => aiModel.name === modelName)\r\n                  ?.label ?? \"\"\r\n              }\r\n              error={modelName === \"\"}\r\n              helperText={modelName === \"\" ? \"Please select a model\" : \"\"}\r\n              style={styles.existingModel}\r\n              onChange={(e) => {\r\n                trainingSettings.metaData.name = e.target.value;\r\n                trainingSettings.metaData.version = \"\";\r\n                setTrainingSettings(trainingSettings);\r\n              }}\r\n            >\r\n              {existingAiModels.map((aiModel) => (\r\n                <MenuItem key={aiModel.name} value={aiModel.name}>\r\n                  {aiModel.name}\r\n                </MenuItem>\r\n              )) ?? []}\r\n            </TextField>\r\n            <TextField\r\n              name=\"Textfield\"\r\n              select\r\n              label=\"Select Version\"\r\n              value={modelVersion}\r\n              error={modelVersion === \"\"}\r\n              helperText={modelVersion === \"\" ? \"Please select a version\" : \"\"}\r\n              style={styles.existingVersion}\r\n              onChange={(e) => {\r\n                trainingSettings.metaData.version = e.target.value;\r\n                setTrainingSettings(trainingSettings);\r\n              }}\r\n            >\r\n              {existingAiModels\r\n                .find((aiModel) => aiModel.name === modelName)\r\n                ?.versions.map((version) => (\r\n                  <MenuItem key={version.label} value={version.label}>\r\n                    {version.label}\r\n                  </MenuItem>\r\n                )) ?? [\"\"]}\r\n            </TextField>\r\n          </>\r\n        )}\r\n    </>\r\n  );\r\n}\r\n\r\nModelMetaData.propTypes = {\r\n  trainingSettings: PropTypes.object.isRequired,\r\n  setTrainingSettings: PropTypes.func.isRequired,\r\n  existingAiModels: PropTypes.array,\r\n  nameInUse: PropTypes.bool,\r\n  containsInvalidChar: PropTypes.bool,\r\n};\r\n\r\nModelMetaData.defaultProps = {\r\n  existingAiModels: [],\r\n  nameInUse: false,\r\n  containsInvalidChar: false,\r\n};\r\n","// Copyright: HS Analysis GmbH, 2023\r\n// Author: Valentin Haas\r\n\r\n// Framework imports\r\nimport React from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\n// External packages\r\nimport DialogContentText from \"@mui/material/DialogContentText\";\r\nimport ImageListItem from \"@mui/material/ImageListItem\";\r\nimport ImageListItemBar from \"@mui/material/ImageListItemBar\";\r\nimport ImageList from \"@mui/material/ImageList\";\r\n\r\n// HSA packages\r\nimport { DatasetType } from \"../../../common/components/AITrainingSettings\";\r\n\r\nconst styles = {\r\n  images: {\r\n    width: \"100%\",\r\n    maxHeight: 350,\r\n    objectFit: \"cover\",\r\n  },\r\n  projectTile: {\r\n    cursor: \"pointer\",\r\n    padding: 1,\r\n    \"&:hover\": {\r\n      background: \"#AAA\",\r\n    },\r\n  },\r\n  projectTileSelected: {\r\n    background: \"#1BA1E2!important\",\r\n  },\r\n  tileHeadline: {\r\n    textAlign: \"center\",\r\n    padding: 0,\r\n    marginBottom: 4,\r\n    lineHeight: \"32px\",\r\n  },\r\n};\r\n\r\nconst datasetOptions = Object.freeze({\r\n  default: {\r\n    classification: {\r\n      title: \"Classification\",\r\n      description: \"Assign objects to different classes.\",\r\n      src: \"img/classification_default.jpg\",\r\n      alt: \"Classification Img\",\r\n      datasetType: DatasetType.ImageClassification,\r\n    },\r\n    objectDetection: {\r\n      title: \"Object Detection\",\r\n      description: \"Detect objects and draw bounding box around it.\",\r\n      src: \"img/object_detection_default.jpg\",\r\n      alt: \"Object Detection Img\",\r\n      datasetType: DatasetType.ImageObjectDetection,\r\n    },\r\n    segmentation: {\r\n      title: \"Segmentation\",\r\n      description: \"Detect objects and draw exact border around object.\",\r\n      src: \"img/segmentation_default.jpg\",\r\n      alt: \"Segmentation Img\",\r\n      datasetType: DatasetType.ImageSegmentation,\r\n    },\r\n    instanceSegmentation: {\r\n      title: \"Instance Segmentation\",\r\n      description: \"Segmentation + differentiate between touching objects.\",\r\n      src: \"img/instance_segmentation_default.jpg\",\r\n      alt: \"Instance Segmentation Img\",\r\n      datasetType: DatasetType.ImageInstanceSegmentation,\r\n    },\r\n  },\r\n  med: {\r\n    classification: {\r\n      title: \"Classification\",\r\n      description: \"Assign objects to different classes.\",\r\n      src: \"img/classification_med.jpg\",\r\n      alt: \"Classification Img\",\r\n      datasetType: DatasetType.ImageClassification,\r\n    },\r\n    objectDetection: {\r\n      title: \"Object Detection\",\r\n      description: \"Detect objects and draw bounding box around it.\",\r\n      src: \"img/object_detection_med.jpg\",\r\n      alt: \"Object Detection Img\",\r\n      datasetType: DatasetType.ImageObjectDetection,\r\n    },\r\n    segmentation: {\r\n      title: \"Segmentation\",\r\n      description: \"Detect objects and draw exact border around object.\",\r\n      src: \"img/segmentation_med.jpg\",\r\n      alt: \"Segmentation Img\",\r\n      datasetType: DatasetType.ImageSegmentation,\r\n    },\r\n    instanceSegmentation: {\r\n      title: \"Instance Segmentation\",\r\n      description: \"Segmentation + differentiate between touching objects.\",\r\n      src: \"img/instance_segmentation_med.jpg\",\r\n      alt: \"Instance Segmentation Img\",\r\n      datasetType: DatasetType.ImageInstanceSegmentation,\r\n    },\r\n  },\r\n  audio: {\r\n    classification: {\r\n      title: \"Audio Classification\",\r\n      description: \"Assigns audio clips to different classes.\",\r\n      src: \"img/classification_default.jpg\",\r\n      alt: \"Audio Classification Image\",\r\n      datasetType: DatasetType.AudioClassification,\r\n    },\r\n    objectDetection: {\r\n      title: \"Sequence Detection\",\r\n      description:\r\n        \"Detect sequences within audio and marks them in audio stream.\",\r\n      src: \"img/object_detection_default.jpg\",\r\n      alt: \"Sequence Detection Image\",\r\n      datasetType: DatasetType.AudioSequenceDetection,\r\n    },\r\n    segmentation: {\r\n      title: \"Sequence Segmentation\",\r\n      description:\r\n        \"Detect sequences and draw exact border around time and frequency.\",\r\n      src: \"img/segmentation_default.jpg\",\r\n      alt: \"Sequence Segmentation Image\",\r\n      datasetType: DatasetType.AudioSequenceSegmentation,\r\n    },\r\n    instanceSegmentation: {\r\n      title: \"Sequence Instance Segmentation\",\r\n      description:\r\n        \"Sequence Segmentation + differentiate between touching tracks.\",\r\n      src: \"img/instance_segmentation_default.jpg\",\r\n      alt: \"Instance Segmentation Image\",\r\n      datasetType: DatasetType.AudioSequenceInstanceSegmentation,\r\n    },\r\n  },\r\n});\r\n\r\nconst mapModuleToModelOptions = Object.freeze({\r\n  AudioAnnotator: datasetOptions.audio,\r\n});\r\n\r\n/**\r\n * Component to select the model type for the training.\r\n * @param {AITrainingSettings} trainingSettings The collected training settings.\r\n * @param {function} setTrainingSettings The function to set the training settings.\r\n * @param {string} projectType The project type. Used to determine the selectable model options.\r\n * @returns {JSX.Element} The component to select the model type for the training.\r\n */\r\nexport default function ModelTypeSelection(props) {\r\n  const { trainingSettings, setTrainingSettings } = props;\r\n  const model_options =\r\n    mapModuleToModelOptions[props.projectType] ?? datasetOptions.default;\r\n\r\n  return (\r\n    <div>\r\n      <>\r\n        <DialogContentText\r\n          component={\"span\"}\r\n          style={{ paddingTop: \"0px\", marginBottom: \"20px\" }}\r\n        >\r\n          <div>\r\n            Choose the model type for your training:\r\n            <ul>\r\n              {Object.keys(model_options).map((option) => {\r\n                return (\r\n                  <li key={model_options[option].datasetType}>\r\n                    <strong>{model_options[option].title}:</strong>{\" \"}\r\n                    {model_options[option].description}\r\n                  </li>\r\n                );\r\n              })}\r\n            </ul>\r\n          </div>\r\n        </DialogContentText>\r\n        <ImageList\r\n          style={{ margin: \"0px\" }}\r\n          //rowHeight={360}\r\n          spacing={8}\r\n          cols={Object.keys(model_options).length}\r\n        >\r\n          {Object.keys(model_options).map((option) => (\r\n            <ImageListItem\r\n              key={model_options[option].title}\r\n              sx={{\r\n                ...styles.projectTile,\r\n                ...(trainingSettings.datasetParameters.datasetType ===\r\n                  model_options[option].datasetType &&\r\n                  styles.projectTileSelected),\r\n              }}\r\n              onClick={() => {\r\n                trainingSettings.datasetParameters.datasetType =\r\n                  model_options[option].datasetType;\r\n                setTrainingSettings(trainingSettings);\r\n              }}\r\n            >\r\n              <img\r\n                src={model_options[option].src}\r\n                alt={model_options[option].alt}\r\n                style={styles.images}\r\n              />\r\n              <ImageListItemBar\r\n                title={model_options[option].title}\r\n                position=\"bottom\"\r\n              />\r\n            </ImageListItem>\r\n          ))}\r\n        </ImageList>\r\n      </>\r\n    </div>\r\n  );\r\n}\r\n\r\nModelTypeSelection.propTypes = {\r\n  trainingSettings: PropTypes.object.isRequired,\r\n  setTrainingSettings: PropTypes.func.isRequired,\r\n  projectType: PropTypes.string,\r\n};\r\n","// Copyright: HS Analysis GmbH, 2023\r\n// Author: Valentin Haas\r\n\r\n// Framework imports\r\nimport React, { useEffect } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\n// External packages\r\nimport DialogContentText from \"@mui/material/DialogContentText\";\r\nimport Grid from \"@mui/material/Grid\";\r\nimport Checkbox from \"@mui/material/Checkbox\";\r\nimport FormControlLabel from \"@mui/material/FormControlLabel\";\r\nimport Typography from \"@mui/material/Typography\";\r\n\r\n// HSA packages\r\nimport Structure, {\r\n  parentStructures,\r\n  childStructures,\r\n} from \"../../../common/components/Structure\";\r\nimport StructureTree from \"../../../audioViewer/sidebar/StructureTree\";\r\nimport AITrainingSettings from \"../../../common/components/AITrainingSettings\";\r\n\r\nconst styles = {\r\n  root: {\r\n    overflow: \"hidden\",\r\n    display: \"grid\",\r\n    gridTemplateRows: \"auto 1fr\",\r\n  },\r\n};\r\n\r\n/**\r\n * View to choose which structures should be used for training.\r\n * @param {AITrainingSettings} trainingSettings The training settings.\r\n * @param {function} setTrainingSettings The function to set the training settings.\r\n * @param {object} project The project the strucuture tree referrs to.\r\n * @param {object} user The current user.\r\n * @param {array} structures The structures to display.\r\n * @param {function} setStructures The function to set the structures.\r\n * @param {boolean} allStructuresEnabled True if all structures are enabled, false otherwise.\r\n * @param {function} setAllStructuresEnabled The function to set the allStructuresEnabled flag.\r\n * @returns {JSX.Element} The selection view.\r\n */\r\nexport default function StructureSelection(props) {\r\n  const {\r\n    trainingSettings,\r\n    setTrainingSettings,\r\n    project,\r\n    structures = [],\r\n    setStructures = () => {},\r\n    allStructuresEnabled = false,\r\n    setAllStructuresEnabled = () => {},\r\n  } = props;\r\n\r\n  useEffect(() => {\r\n    setTrainingSettings(() => {\r\n      trainingSettings.structures = structures.filter((s) => s.isChosen);\r\n      return trainingSettings;\r\n    });\r\n  }, [structures]);\r\n\r\n  /**\r\n   * Checks if a structure can be selected.\r\n   * @param {Structure} structure The structure to check.\r\n   * @returns {boolean} True if the structure can be selected, false otherwise.\r\n   */\r\n  const structureCanBeSelected = (structure) => {\r\n    // Override if all structures are enabled.\r\n    if (allStructuresEnabled) return true;\r\n\r\n    // Structure is not selectable if it has no objects.\r\n    if (structure.totalObjectCount <= 0) return false;\r\n\r\n    // Check if any parent is selected\r\n    const anyParentSelected = parentStructures(structure, structures)\r\n      .slice(0, -1) // Remove the structure itself\r\n      .some((parent) => parent.isChosen);\r\n\r\n    // Check if any child is selected\r\n    const anyChildSelected = childStructures(structure, structures)\r\n      .slice(1) // Remove the structure itself\r\n      .some((child) => child.isChosen);\r\n\r\n    return !(anyParentSelected || anyChildSelected);\r\n  };\r\n\r\n  return (\r\n    <>\r\n      <Grid container sx={styles.root}>\r\n        <Grid container item xs={12}>\r\n          <Grid item xs={10}>\r\n            <DialogContentText>\r\n              Select all structures that should be detected/classified by your\r\n              model:\r\n            </DialogContentText>\r\n          </Grid>\r\n          <Grid item xs={2}>\r\n            <FormControlLabel\r\n              control={\r\n                <Checkbox\r\n                  name=\"CheckboxAllStructuresEnabled\"\r\n                  checked={allStructuresEnabled}\r\n                  onChange={(e) => setAllStructuresEnabled(e.target.checked)}\r\n                />\r\n              }\r\n              label={\r\n                <Typography variant=\"caption\">Enable all structures</Typography>\r\n              }\r\n            />\r\n          </Grid>\r\n        </Grid>\r\n      </Grid>\r\n      <StructureTree\r\n        project={project}\r\n        structures={structures}\r\n        setStructures={setStructures}\r\n        isLocked={true}\r\n        allowChoices={true}\r\n        allStructuresEnabled={allStructuresEnabled}\r\n        structureSelectability={structureCanBeSelected}\r\n        trainingSettings={trainingSettings}\r\n        setTrainingSettings={setTrainingSettings}\r\n      />\r\n    </>\r\n  );\r\n}\r\n\r\nStructureSelection.propTypes = {\r\n  trainingSettings: PropTypes.instanceOf(AITrainingSettings).isRequired,\r\n  setTrainingSettings: PropTypes.func.isRequired,\r\n  project: PropTypes.object.isRequired,\r\n  structures: PropTypes.arrayOf(PropTypes.instanceOf(Structure)),\r\n  setStructures: PropTypes.func,\r\n  allStructuresEnabled: PropTypes.bool,\r\n  setAllStructuresEnabled: PropTypes.func,\r\n};\r\n","// Copyright HS Analysis GmbH, 2023\r\n// Author: Valentin Haas\r\n\r\n// Framework imports\r\nimport React, { useState, useEffect } from \"react\";\r\nimport { PropTypes } from \"prop-types\";\r\n\r\n// External imports\r\nimport { floor } from \"mathjs\";\r\n\r\n// Material UI imports\r\nimport Checkbox from \"@mui/material/Checkbox\";\r\nimport ListItemText from \"@mui/material/ListItemText\";\r\nimport MenuItem from \"@mui/material/MenuItem\";\r\nimport TextField from \"@mui/material/TextField\";\r\n\r\n// HSA Imports\r\nimport AITrainingSettings, {\r\n  DatasetApproach,\r\n  DatasetApproachNames,\r\n  TrainingDataTypes,\r\n  Optimizer,\r\n  OptimizerNames,\r\n  LossFunction,\r\n  LossFunctionNames,\r\n  Metrics,\r\n  MetricsNames,\r\n} from \"../../../common/components/AITrainingSettings\";\r\n\r\n// #region Commonly used settings\r\n/**\r\n * A text field to select the dataset approach.\r\n * @param {AITrainingSettings} trainingSettings The training settings object.\r\n * @param {function} setTrainingSettings The function to set/update the training settings object.\r\n * @param {trainingDataTypes} trainingDataType The type of the training data.\r\n * @returns {JSX.Element} The component JSX.\r\n */\r\nexport function DatasetApproachSelection(props) {\r\n  const { trainingSettings, setTrainingSettings, trainingDataType } = props;\r\n\r\n  return (\r\n    <TextField\r\n      select\r\n      name=\"dataset_approach\"\r\n      margin=\"normal\"\r\n      size=\"small\"\r\n      label=\"Dataset approach\"\r\n      variant=\"outlined\"\r\n      value={trainingSettings.datasetParameters.datasetApproach}\r\n      onChange={(e) => {\r\n        trainingSettings.datasetParameters.datasetApproach = e.target.value;\r\n        setTrainingSettings(trainingSettings);\r\n      }}\r\n    >\r\n      {Object.values(DatasetApproach)\r\n        .filter((value) => floor(value / 10) === trainingDataType)\r\n        .map((value) => {\r\n          return (\r\n            <MenuItem key={value} value={value}>\r\n              {DatasetApproachNames[value]}\r\n            </MenuItem>\r\n          );\r\n        })}\r\n    </TextField>\r\n  );\r\n}\r\n\r\nDatasetApproachSelection.propTypes = {\r\n  trainingSettings: PropTypes.instanceOf(AITrainingSettings).isRequired,\r\n  setTrainingSettings: PropTypes.func.isRequired,\r\n  trainingDataType: PropTypes.oneOf(Object.values(TrainingDataTypes))\r\n    .isRequired,\r\n};\r\n\r\n/**\r\n * A number selection field to select the number of epochs.\r\n * @param {AITrainingSettings} trainingSettings The training settings object.\r\n * @param {function} setTrainingSettings The function to set/update the training settings object.\r\n * @returns {JSX.Element} The component JSX.\r\n */\r\nexport function EpochSelection(props) {\r\n  const { trainingSettings, setTrainingSettings } = props;\r\n\r\n  return (\r\n    <TextField\r\n      name=\"epochs\"\r\n      margin=\"normal\"\r\n      type=\"number\"\r\n      size=\"small\"\r\n      label=\"Epochs\"\r\n      placeholder=\"Enter number of epochs...\"\r\n      variant=\"outlined\"\r\n      value={trainingSettings.trainingParameters.epochs}\r\n      onChange={(e) => {\r\n        trainingSettings.trainingParameters.epochs = e.target.value;\r\n        setTrainingSettings(trainingSettings);\r\n      }}\r\n      InputProps={{ inputProps: { min: 1 } }}\r\n    />\r\n  );\r\n}\r\n\r\nEpochSelection.propTypes = {\r\n  trainingSettings: PropTypes.instanceOf(AITrainingSettings).isRequired,\r\n  setTrainingSettings: PropTypes.func.isRequired,\r\n};\r\n\r\n// #endregion\r\n\r\n// #region Model Settings\r\n\r\n/**\r\n * A number selection field to select the model learning rate.\r\n * @param {AITrainingSettings} trainingSettings The training settings object.\r\n * @param {function} setTrainingSettings The function to set/update the training settings object.\r\n * @returns {JSX.Element} The component JSX.\r\n * @returns\r\n */\r\nexport function LearningRateSelection(props) {\r\n  const { trainingSettings, setTrainingSettings } = props;\r\n\r\n  return (\r\n    <TextField\r\n      name=\"learning_rate\"\r\n      margin=\"normal\"\r\n      type=\"number\"\r\n      size=\"small\"\r\n      label=\"Learning rate\"\r\n      placeholder=\"Enter learning rate...\"\r\n      variant=\"outlined\"\r\n      InputProps={{\r\n        inputProps: { step: 0.0001, min: 0.0 },\r\n      }}\r\n      value={trainingSettings.trainingParameters.learningRate}\r\n      onChange={(e) => {\r\n        trainingSettings.trainingParameters.learningRate = e.target.value;\r\n        setTrainingSettings(trainingSettings);\r\n      }}\r\n    />\r\n  );\r\n}\r\n\r\nLearningRateSelection.propTypes = {\r\n  trainingSettings: PropTypes.instanceOf(AITrainingSettings).isRequired,\r\n  setTrainingSettings: PropTypes.func.isRequired,\r\n};\r\n\r\n/**\r\n * A number selection field to select the model batch size.\r\n * @param {AITrainingSettings} trainingSettings The training settings object.\r\n * @param {function} setTrainingSettings The function to set/update the training settings object.\r\n * @returns {JSX.Element} The component JSX.\r\n */\r\nexport function BatchSizeSelection(props) {\r\n  const { trainingSettings, setTrainingSettings } = props;\r\n\r\n  return (\r\n    <TextField\r\n      name=\"batch_size\"\r\n      margin=\"normal\"\r\n      type=\"number\"\r\n      size=\"small\"\r\n      label=\"Batch size\"\r\n      InputProps={{\r\n        inputProps: {\r\n          min: 1,\r\n        },\r\n      }}\r\n      value={trainingSettings.trainingParameters.batchSize}\r\n      onChange={(e) => {\r\n        trainingSettings.trainingParameters.batchSize = e.target.value;\r\n        setTrainingSettings(trainingSettings);\r\n      }}\r\n    />\r\n  );\r\n}\r\n\r\nBatchSizeSelection.propTypes = {\r\n  trainingSettings: PropTypes.instanceOf(AITrainingSettings).isRequired,\r\n  setTrainingSettings: PropTypes.func.isRequired,\r\n};\r\n\r\n/**\r\n * A number selection field to select the early stopping limit.\r\n * @param {AITrainingSettings} trainingSettings The training settings object.\r\n * @param {function} setTrainingSettings The function to set/update the training settings object.\r\n * @returns {JSX.Element} The component JSX.\r\n */\r\nexport function EarlyStoppingLimitSelection(props) {\r\n  const { trainingSettings, setTrainingSettings } = props;\r\n\r\n  return (\r\n    <TextField\r\n      name=\"earlyStopping\"\r\n      margin=\"normal\"\r\n      type=\"number\"\r\n      size=\"small\"\r\n      label=\"Early stopping\"\r\n      InputLabelProps={{\r\n        shrink: true,\r\n      }}\r\n      value={trainingSettings.trainingParameters.earlyStopping}\r\n      InputProps={{ inputProps: { min: 1, max: 10000 } }}\r\n      onChange={(e) => {\r\n        trainingSettings.trainingParameters.earlyStopping = e.target.value;\r\n        setTrainingSettings(trainingSettings);\r\n      }}\r\n    />\r\n  );\r\n}\r\n\r\nEarlyStoppingLimitSelection.propTypes = {\r\n  trainingSettings: PropTypes.instanceOf(AITrainingSettings).isRequired,\r\n  setTrainingSettings: PropTypes.func.isRequired,\r\n};\r\n\r\n/**\r\n * A list of optimizers to select one from.\r\n * @param {AITrainingSettings} trainingSettings The training settings object.\r\n * @param {function} setTrainingSettings The function to set/update the training settings object.\r\n * @returns {JSX.Element} The component JSX.\r\n */\r\nexport function OptimizerSelection(props) {\r\n  const { trainingSettings, setTrainingSettings } = props;\r\n\r\n  return (\r\n    <TextField\r\n      select\r\n      name=\"optimizer\"\r\n      margin=\"normal\"\r\n      size=\"small\"\r\n      label=\"Optimizer\"\r\n      variant=\"outlined\"\r\n      value={trainingSettings.trainingParameters.optimizer}\r\n      onChange={(e) => {\r\n        trainingSettings.trainingParameters.optimizer = e.target.value;\r\n        setTrainingSettings(trainingSettings);\r\n      }}\r\n    >\r\n      {Object.values(Optimizer).map((value) => {\r\n        return (\r\n          <MenuItem key={value} value={value}>\r\n            {OptimizerNames[value]}\r\n          </MenuItem>\r\n        );\r\n      })}\r\n    </TextField>\r\n  );\r\n}\r\n\r\nOptimizerSelection.propTypes = {\r\n  trainingSettings: PropTypes.instanceOf(AITrainingSettings).isRequired,\r\n  setTrainingSettings: PropTypes.func.isRequired,\r\n};\r\n\r\n/**\r\n * A list of loss functions to select one or more from.\r\n * @param {AITrainingSettings} trainingSettings The training settings object.\r\n * @param {function} setTrainingSettings The function to set/update the training settings object.\r\n * @returns {JSX.Element} The component JSX.\r\n */\r\nexport function LossFunctionSelection(props) {\r\n  const { trainingSettings, setTrainingSettings } = props;\r\n\r\n  return (\r\n    <TextField\r\n      select\r\n      label=\"Loss Functions\"\r\n      size=\"small\"\r\n      margin=\"normal\"\r\n      placeholder=\"Select loss functions...\"\r\n      error={trainingSettings.trainingParameters.lossFunctions.length === 0}\r\n      SelectProps={{\r\n        value: trainingSettings.trainingParameters.lossFunctions.map(\r\n          (value) => LossFunctionNames[value]\r\n        ),\r\n        multiple: true,\r\n        renderValue: (selected) => {\r\n          if (selected.length === 1) return selected[0];\r\n          return `${selected.length} selected`;\r\n        },\r\n      }}\r\n    >\r\n      {Object.values(LossFunction).map((value) => (\r\n        <MenuItem key={value} value={value}>\r\n          <Checkbox\r\n            name=\"CheckboxLossFunction\"\r\n            checked={trainingSettings.trainingParameters.lossFunctions.includes(\r\n              value\r\n            )}\r\n            onChange={() => {\r\n              if (\r\n                trainingSettings.trainingParameters.lossFunctions.includes(\r\n                  value\r\n                )\r\n              ) {\r\n                trainingSettings.trainingParameters.lossFunctions =\r\n                  trainingSettings.trainingParameters.lossFunctions.filter(\r\n                    (item) => item !== value\r\n                  );\r\n              } else {\r\n                trainingSettings.trainingParameters.lossFunctions.push(value);\r\n              }\r\n              setTrainingSettings(trainingSettings);\r\n            }}\r\n          />\r\n          <ListItemText primary={LossFunctionNames[value]} />\r\n        </MenuItem>\r\n      ))}\r\n    </TextField>\r\n  );\r\n}\r\n\r\nLossFunctionSelection.propTypes = {\r\n  trainingSettings: PropTypes.instanceOf(AITrainingSettings).isRequired,\r\n  setTrainingSettings: PropTypes.func.isRequired,\r\n};\r\n\r\n/**\r\n * A list of metrics to select one or more from.\r\n * @param {AITrainingSettings} trainingSettings The training settings object.\r\n * @param {function} setTrainingSettings The function to set/update the training settings object.\r\n * @returns {JSX.Element} The component JSX.\r\n */\r\nexport function MetricsSelection(props) {\r\n  const { trainingSettings, setTrainingSettings } = props;\r\n\r\n  return (\r\n    <TextField\r\n      select\r\n      label=\"Metrics\"\r\n      size=\"small\"\r\n      margin=\"normal\"\r\n      placeholder=\"Select metrics...\"\r\n      error={trainingSettings.trainingParameters.metrics.length === 0}\r\n      SelectProps={{\r\n        value: trainingSettings.trainingParameters.metrics.map(\r\n          (value) => MetricsNames[value]\r\n        ),\r\n        multiple: true,\r\n        renderValue: (selected) => {\r\n          if (selected.length === 1) return selected[0];\r\n          return `${selected.length} selected`;\r\n        },\r\n      }}\r\n    >\r\n      {Object.values(Metrics).map((value) => (\r\n        <MenuItem key={MetricsNames[value]} value={MetricsNames[value]}>\r\n          <Checkbox\r\n            name=\"CheckboxMetrics\"\r\n            checked={trainingSettings.trainingParameters.metrics.includes(\r\n              value\r\n            )}\r\n            onChange={() => {\r\n              if (trainingSettings.trainingParameters.metrics.includes(value)) {\r\n                trainingSettings.trainingParameters.metrics =\r\n                  trainingSettings.trainingParameters.metrics.filter(\r\n                    (item) => item !== value\r\n                  );\r\n              } else {\r\n                trainingSettings.trainingParameters.metrics.push(value);\r\n              }\r\n              setTrainingSettings(trainingSettings);\r\n            }}\r\n          />\r\n          <ListItemText primary={MetricsNames[value]} />\r\n        </MenuItem>\r\n      ))}\r\n    </TextField>\r\n  );\r\n}\r\n\r\nMetricsSelection.propTypes = {\r\n  trainingSettings: PropTypes.instanceOf(AITrainingSettings).isRequired,\r\n  setTrainingSettings: PropTypes.func.isRequired,\r\n};\r\n\r\n// #endregion\r\n\r\n// #region Dataset Settings\r\n\r\n/**\r\n * A drop down menu to select whether to create a dataset, train a model or both.\r\n * @param {AITrainingSettings} trainingSettings The training settings object.\r\n * @param {function} setTrainingSettings The function to set/update the training settings object.\r\n * @returns {JSX.Element} The component JSX.\r\n */\r\nexport function DatasetCreationOptions(props) {\r\n  const { trainingSettings, setTrainingSettings } = props;\r\n  const creationOptions = [\r\n    \"Create dataset & train model\",\r\n    \"Create dataset only\",\r\n    \"Use existing dataset\",\r\n  ];\r\n\r\n  const [selectedCreationOption, setSelectedCreationOption] = useState(\r\n    \"Create dataset & train model\"\r\n  );\r\n\r\n  useEffect(() => {\r\n    setSelectedCreationOption(\r\n      trainingSettings.datasetParameters.useExistingDataset\r\n        ? \"Use existing dataset\"\r\n        : trainingSettings.datasetParameters.datasetOnly\r\n        ? \"Create dataset only\"\r\n        : \"Create dataset & train model\"\r\n    );\r\n  }, [\r\n    trainingSettings.datasetParameters.useExistingDataset,\r\n    trainingSettings.datasetParameters.datasetOnly,\r\n  ]);\r\n\r\n  return (\r\n    <TextField\r\n      select\r\n      name=\"dataset_creation_options\"\r\n      margin=\"normal\"\r\n      size=\"small\"\r\n      label=\"Dataset creation options\"\r\n      variant=\"outlined\"\r\n      value={selectedCreationOption}\r\n      onChange={(e) => {\r\n        trainingSettings.datasetParameters.useExistingDataset =\r\n          e.target.value === \"Use existing dataset\";\r\n        trainingSettings.datasetParameters.datasetOnly =\r\n          e.target.value === \"Create dataset only\";\r\n        setTrainingSettings(trainingSettings);\r\n      }}\r\n    >\r\n      {Object.values(creationOptions).map((value) => {\r\n        return (\r\n          <MenuItem key={value} value={value}>\r\n            {value}\r\n          </MenuItem>\r\n        );\r\n      })}\r\n    </TextField>\r\n  );\r\n}\r\n\r\nDatasetCreationOptions.propTypes = {\r\n  trainingSettings: PropTypes.instanceOf(AITrainingSettings).isRequired,\r\n  setTrainingSettings: PropTypes.func.isRequired,\r\n};\r\n\r\n/**\r\n * A drop down menu to select the image size from a list of predefined values, each a power of 2.\r\n * @param {AITrainingSettings} trainingSettings The training settings object.\r\n * @param {function} setTrainingSettings The function to set/update the training settings object.\r\n * @returns {JSX.Element} The component JSX.\r\n */\r\nexport function ImageSizeSelection(props) {\r\n  const { trainingSettings, setTrainingSettings } = props;\r\n\r\n  return (\r\n    <TextField\r\n      select\r\n      name=\"image size\"\r\n      margin=\"normal\"\r\n      size=\"small\"\r\n      label=\"Image Size\"\r\n      variant=\"outlined\"\r\n      value={trainingSettings.modelParameters.imageWidth}\r\n      onChange={(e) => {\r\n        trainingSettings.modelParameters.imageWidth = e.target.value;\r\n        trainingSettings.modelParameters.imageHeight = e.target.value;\r\n        setTrainingSettings(trainingSettings);\r\n      }}\r\n    >\r\n      {[128, 256, 512, 1024, 2048].map((value) => {\r\n        return (\r\n          <MenuItem key={value} value={value}>\r\n            {value + \" px\"}\r\n          </MenuItem>\r\n        );\r\n      })}\r\n    </TextField>\r\n  );\r\n}\r\n\r\nImageSizeSelection.propTypes = {\r\n  trainingSettings: PropTypes.instanceOf(AITrainingSettings).isRequired,\r\n  setTrainingSettings: PropTypes.func.isRequired,\r\n};\r\n\r\n/**\r\n * A drop down menu to select the image pyramid level from a list of predefined values, passed as props.\r\n * @param {AITrainingSettings} trainingSettings The training settings object.\r\n * @param {function} setTrainingSettings The function to set/update the training settings object.\r\n * @param {Array} pyramidLevels The pyramid levels that can be selected. Each level is an object with a level and description.\r\n * @returns {JSX.Element} The component JSX.\r\n */\r\nexport function ImagePyramidLevelSelection(props) {\r\n  const { trainingSettings, setTrainingSettings, pyramidLevels } = props;\r\n\r\n  return (\r\n    <TextField\r\n      select\r\n      name=\"pyramid level\"\r\n      margin=\"normal\"\r\n      size=\"small\"\r\n      label=\"Pyramid Level\"\r\n      variant=\"outlined\"\r\n      value={trainingSettings.modelParameters.pyramidLevel}\r\n      onChange={(e) => {\r\n        trainingSettings.modelParameters.pyramidLevel = e.target.value;\r\n        setTrainingSettings(trainingSettings);\r\n      }}\r\n    >\r\n      {pyramidLevels.map((levelData) => {\r\n        return (\r\n          <MenuItem key={levelData.level} value={levelData.level}>\r\n            {levelData.description}\r\n          </MenuItem>\r\n        );\r\n      })}\r\n    </TextField>\r\n  );\r\n}\r\n\r\nImagePyramidLevelSelection.propTypes = {\r\n  trainingSettings: PropTypes.instanceOf(AITrainingSettings).isRequired,\r\n  setTrainingSettings: PropTypes.func.isRequired,\r\n  pyramidLevels: PropTypes.arrayOf(\r\n    PropTypes.shape({\r\n      level: PropTypes.number.isRequired,\r\n      description: PropTypes.string.isRequired,\r\n    })\r\n  ).isRequired,\r\n};\r\n\r\n/**\r\n * A drop down menu to select the image input channels from a list of predefined values, evaluated from the OME metadata.\r\n * @param {AITrainingSettings} trainingSettings The training settings object.\r\n * @param {function} setTrainingSettings The function to set/update the training settings object.\r\n * @param {OME} ome The OME metadata object.\r\n * @returns {JSX.Element} The component JSX.\r\n */\r\nexport function ImageInputChannelSelection(props) {\r\n  const { trainingSettings, setTrainingSettings, ome } = props;\r\n\r\n  // Check if the image is brightfield or fluorescence\r\n  const isBrightfield =\r\n    ome && ome.channels.length === 1 && ome.channels[0].type === \"brightfield\";\r\n\r\n  useEffect(() => {\r\n    if (!isBrightfield) {\r\n      // Set the fluorescence channels (default: all channels are selected)\r\n      trainingSettings.modelParameters.fluorescenceChannels = [];\r\n      ome.channels.forEach((channel) => {\r\n        trainingSettings.modelParameters.fluorescenceChannels.push(\r\n          channel.name\r\n        );\r\n      });\r\n\r\n      trainingSettings.modelParameters.inputChannels =\r\n        trainingSettings.modelParameters.fluorescenceChannels.length;\r\n\r\n      setTrainingSettings(trainingSettings);\r\n    }\r\n  }, []);\r\n\r\n  return !isBrightfield > 0 ? (\r\n    <TextField\r\n      select\r\n      label=\"Input Channels\"\r\n      size=\"small\"\r\n      margin=\"normal\"\r\n      placeholder=\"Select input channels...\"\r\n      error={trainingSettings.modelParameters.fluorescenceChannels.length === 0}\r\n      SelectProps={{\r\n        value: trainingSettings.modelParameters.fluorescenceChannels,\r\n        multiple: true,\r\n        renderValue: (selected) => {\r\n          if (selected.length === 1) return selected[0];\r\n          return `${selected.length} selected`;\r\n        },\r\n      }}\r\n    >\r\n      {ome.channels.map((channel) => (\r\n        <MenuItem key={channel.name} value={channel.name}>\r\n          <Checkbox\r\n            checked={trainingSettings.modelParameters.fluorescenceChannels.includes(\r\n              channel.name\r\n            )}\r\n            onChange={() => {\r\n              const index =\r\n                trainingSettings.modelParameters.fluorescenceChannels.indexOf(\r\n                  channel.name\r\n                );\r\n\r\n              if (index === -1) {\r\n                // Element is not in the array, so add it\r\n                trainingSettings.modelParameters.fluorescenceChannels.push(\r\n                  channel.name\r\n                );\r\n              } else {\r\n                // Element is already in the array, so remove it\r\n                trainingSettings.modelParameters.fluorescenceChannels.splice(\r\n                  index,\r\n                  1\r\n                );\r\n              }\r\n              setTrainingSettings(trainingSettings);\r\n            }}\r\n          />\r\n          <ListItemText\r\n            primary={channel.name}\r\n            style={{\r\n              background: channel.color,\r\n              paddingLeft: 10,\r\n            }}\r\n          />\r\n        </MenuItem>\r\n      ))}\r\n    </TextField>\r\n  ) : (\r\n    <TextField\r\n      label=\"Input Channels\"\r\n      select\r\n      size=\"small\"\r\n      value={trainingSettings.modelParameters.inputChannels}\r\n      onChange={(e) => {\r\n        trainingSettings.modelParameters.inputChannels = e.target.value;\r\n        setTrainingSettings(trainingSettings);\r\n      }}\r\n    >\r\n      <MenuItem key={3} value={3}>\r\n        3 (RGB)\r\n      </MenuItem>\r\n      <MenuItem key={1} value={1}>\r\n        1 (grey)\r\n      </MenuItem>\r\n    </TextField>\r\n  );\r\n}\r\n\r\nImageInputChannelSelection.propTypes = {\r\n  trainingSettings: PropTypes.instanceOf(AITrainingSettings).isRequired,\r\n  setTrainingSettings: PropTypes.func.isRequired,\r\n  ome: PropTypes.object.isRequired,\r\n};\r\n\r\n/**\r\n * A number selection field to select the sequence length in seconds for audio datasets.\r\n * @param {AITrainingSettings} trainingSettings The training settings object.\r\n * @param {function} setTrainingSettings The function to set/update the training settings object.\r\n * @returns {JSX.Element} A number selection field to select the sequence length in seconds for audio datasets.\r\n */\r\nexport function AudioSequenceLengthSelection(props) {\r\n  const { trainingSettings, setTrainingSettings } = props;\r\n\r\n  return (\r\n    <TextField\r\n      name=\"sequence_length_seconds\"\r\n      margin=\"normal\"\r\n      type=\"number\"\r\n      size=\"small\"\r\n      label=\"Sequence length (seconds)\"\r\n      placeholder=\"Enter sequence length...\"\r\n      variant=\"outlined\"\r\n      value={trainingSettings.modelParameters.sequenceLengthSeconds}\r\n      onChange={(e) => {\r\n        trainingSettings.modelParameters.sequenceLengthSeconds = e.target.value;\r\n        setTrainingSettings(trainingSettings);\r\n      }}\r\n      InputProps={{\r\n        inputProps: {\r\n          min: 0.001,\r\n          step: 0.001,\r\n        },\r\n      }}\r\n    />\r\n  );\r\n}\r\n\r\nAudioSequenceLengthSelection.propTypes = {\r\n  trainingSettings: PropTypes.instanceOf(AITrainingSettings).isRequired,\r\n  setTrainingSettings: PropTypes.func.isRequired,\r\n};\r\n\r\n/**\r\n * A number selection field to select the sequence overlap in seconds for audio datasets.\r\n * @param {AITrainingSettings} trainingSettings The training settings object.\r\n * @param {function} setTrainingSettings The function to set/update the training settings object.\r\n * @returns {JSX.Element} A number selection field to select the sequence overlap in seconds for audio datasets.\r\n */\r\nexport function AudioSequenceOverlapSelection(props) {\r\n  const { trainingSettings, setTrainingSettings } = props;\r\n\r\n  return (\r\n    <TextField\r\n      name=\"sequence_overlap_seconds\"\r\n      margin=\"normal\"\r\n      type=\"number\"\r\n      size=\"small\"\r\n      label=\"Sequence overlap (seconds)\"\r\n      variant=\"outlined\"\r\n      value={trainingSettings.modelParameters.sequenceOverlapSeconds}\r\n      onChange={(e) => {\r\n        trainingSettings.modelParameters.sequenceOverlapSeconds =\r\n          e.target.value;\r\n        setTrainingSettings(trainingSettings);\r\n      }}\r\n      InputProps={{\r\n        inputProps: {\r\n          step: 0.001,\r\n        },\r\n      }}\r\n    />\r\n  );\r\n}\r\n\r\nAudioSequenceOverlapSelection.propTypes = {\r\n  trainingSettings: PropTypes.instanceOf(AITrainingSettings).isRequired,\r\n  setTrainingSettings: PropTypes.func.isRequired,\r\n};\r\n\r\n/**\r\n * A number selection field to select the number of classes for audio datasets.\r\n * @param {AITrainingSettings} trainingSettings The training settings object.\r\n * @param {function} setTrainingSettings The function to set/update the training settings object.\r\n * @returns {JSX.Element} A number selection field to select the number of classes for audio datasets.\r\n */\r\nexport function AudioNumberOfClassesSelection(props) {\r\n  const { trainingSettings, setTrainingSettings } = props;\r\n\r\n  return (\r\n    <TextField\r\n      name=\"number_of_classes\"\r\n      margin=\"normal\"\r\n      type=\"number\"\r\n      size=\"small\"\r\n      label=\"Number of classes\"\r\n      variant=\"outlined\"\r\n      value={trainingSettings.modelParameters.numberOfClasses}\r\n      onChange={(e) => {\r\n        trainingSettings.modelParameters.numberOfClasses = e.target.value;\r\n        setTrainingSettings(trainingSettings);\r\n      }}\r\n      InputProps={{\r\n        inputProps: {\r\n          min: 1,\r\n          step: 1,\r\n        },\r\n      }}\r\n    />\r\n  );\r\n}\r\n\r\nAudioNumberOfClassesSelection.propTypes = {\r\n  trainingSettings: PropTypes.instanceOf(AITrainingSettings).isRequired,\r\n  setTrainingSettings: PropTypes.func.isRequired,\r\n};\r\n\r\n// #endregion\r\n","// Copyright HS Analysis GmbH, 2023\r\n// Author: Valentin Haas\r\n\r\n// Framework imports\r\nimport React from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\n// External imports\r\n\r\n// Material UI imports\r\nimport FormControl from \"@mui/material/FormControl\";\r\nimport Grid from \"@mui/material/Grid\";\r\nimport Typography from \"@mui/material/Typography\";\r\nimport Accordion from \"@mui/material/Accordion\";\r\nimport AccordionSummary from \"@mui/material/AccordionSummary\";\r\nimport AccordionDetails from \"@mui/material/AccordionDetails\";\r\nimport ExpandMoreIcon from \"@mui/icons-material/ExpandMore\";\r\nimport Tooltip from \"@mui/material/Tooltip\";\r\nimport HelpOutlineIcon from \"@mui/icons-material/HelpOutline\";\r\n\r\n// HSA Imports\r\nimport {\r\n  BatchSizeSelection,\r\n  DatasetApproachSelection,\r\n  DatasetCreationOptions,\r\n  EarlyStoppingLimitSelection,\r\n  EpochSelection,\r\n  LearningRateSelection,\r\n  LossFunctionSelection,\r\n  MetricsSelection,\r\n  OptimizerSelection,\r\n  ImageSizeSelection,\r\n  ImageInputChannelSelection,\r\n  ImagePyramidLevelSelection,\r\n  AudioNumberOfClassesSelection,\r\n  AudioSequenceLengthSelection,\r\n  AudioSequenceOverlapSelection,\r\n} from \"./SettingOptions\";\r\nimport { TrainingDataTypes } from \"../../../common/components/AITrainingSettings\";\r\n\r\nconst styles = {\r\n  accordion: {\r\n    display: \"grid\",\r\n    width: \"100%\",\r\n    gridTemplateColumns: \"1fr auto\",\r\n  },\r\n};\r\n\r\n/**\r\n * The most commonly adjusted settings for the dataset and model. Should be open by default.\r\n * Remaining props are passed on to child components.\r\n * @param {boolean} open Whether the accordion is open or not.\r\n * @param {function} updateOpen Function called to update the open state of the accordion in the parent component.\r\n * @returns {JSX.Element} The settings as an accordion component.\r\n */\r\nexport function CommonlyUsedCategory(props) {\r\n  const { open, updateOpen } = props;\r\n\r\n  const settings = [\r\n    <DatasetApproachSelection key={\"dataset-approach\"} {...props} />,\r\n    <EpochSelection key={\"epochs\"} {...props} />,\r\n  ];\r\n\r\n  return (\r\n    <Accordion\r\n      expanded={open}\r\n      onChange={(_, isExpanded) => updateOpen(isExpanded)}\r\n    >\r\n      <AccordionSummary expandIcon={<ExpandMoreIcon />}>\r\n        <div style={styles.accordion}>\r\n          <Typography>Common Settings</Typography>\r\n          <Tooltip\r\n            placement=\"left\"\r\n            title={\"Commonly adjusted settings. Can be kept as default.\"}\r\n          >\r\n            <HelpOutlineIcon />\r\n          </Tooltip>\r\n        </div>\r\n      </AccordionSummary>\r\n      <AccordionDetails>\r\n        <Grid container spacing={3}>\r\n          {settings.map((setting, idx) => (\r\n            <Grid key={idx} item xs={12} sm={4}>\r\n              <FormControl fullWidth>{setting}</FormControl>\r\n            </Grid>\r\n          ))}\r\n        </Grid>\r\n      </AccordionDetails>\r\n    </Accordion>\r\n  );\r\n}\r\n\r\nCommonlyUsedCategory.propTypes = {\r\n  open: PropTypes.bool.isRequired,\r\n  updateOpen: PropTypes.func.isRequired,\r\n};\r\n\r\n/**\r\n * For image datasets, the pyramid levels that can be selected are calculated.\r\n * @param {OME} ome The the image ome object.\r\n * @returns {Array} Array of pyramid level objects that can be selected.\r\n */\r\nconst getPyramidLevels = (ome) => {\r\n  const dropdownPyramidLevels = [{ level: -1, description: \"default\" }];\r\n  if (ome.maxLevel > 0) {\r\n    for (let i = ome.maxLevel; i >= 0; i--) {\r\n      let zoomFactor = 2 ** (ome.maxLevel - i);\r\n      let levelData = {\r\n        level: i,\r\n        description: \"1 : \" + zoomFactor,\r\n      };\r\n      if (i === 0) {\r\n        levelData.description += \" (Thumbnail)\";\r\n      }\r\n      dropdownPyramidLevels.push(levelData);\r\n    }\r\n  }\r\n  return dropdownPyramidLevels;\r\n};\r\n\r\n/**\r\n * Generates the image dataset settings for an image dataset.\r\n * @param {Object} ome The OME object of the image.\r\n * @returns {Array} Array of components that can be used to select the image dataset settings.\r\n */\r\nconst getImageDatasetSettings = (props) => {\r\n  const { ome } = props;\r\n\r\n  return [\r\n    <ImageSizeSelection key={\"image-size\"} {...props} />,\r\n    <ImagePyramidLevelSelection\r\n      key={\"pyramid-level\"}\r\n      pyramidLevels={getPyramidLevels(ome)}\r\n      {...props}\r\n    />,\r\n    <ImageInputChannelSelection key={\"input-channels\"} {...props} />,\r\n  ];\r\n};\r\n\r\n/**\r\n * Generates the audio dataset settings for an audio dataset.\r\n * @param {Object}\r\n * @returns {Array} Array of components that can be used to select the audio dataset settings.\r\n */\r\nconst getAudioDatasetSettings = (props) => {\r\n  console.log(props);\r\n  return [\r\n    <AudioSequenceLengthSelection key={\"sequence-length\"} {...props} />,\r\n    <AudioSequenceOverlapSelection key={\"sequence-overlap\"} {...props} />,\r\n    <AudioNumberOfClassesSelection key={\"number-of-classes\"} {...props} />,\r\n  ];\r\n};\r\n\r\n/**\r\n * Advanced settings specific to the dataset. Should be closed by default.\r\n * Will be different depending on the type of the training data.\r\n * Remaining props are passed on to child components.\r\n * @param {boolean} open Whether the accordion is open or not.\r\n * @param {function} updateOpen Function called to update the open state of the accordion in the parent component.\r\n * @param {TrainingDataTypes} trainingDataType The type of the training data.\r\n * @returns {JSX.Element} The settings as an accordion component.\r\n */\r\nexport function AdvancedDatasetSettings(props) {\r\n  const { open, updateOpen, trainingDataType } = props;\r\n\r\n  const settings = [\r\n    <DatasetCreationOptions key={\"dataset-creation-options\"} {...props} />,\r\n  ];\r\n  switch (trainingDataType) {\r\n    case TrainingDataTypes.Image:\r\n      settings.push(...getImageDatasetSettings(props));\r\n      break;\r\n\r\n    case TrainingDataTypes.Audio:\r\n      settings.push(...getAudioDatasetSettings(props));\r\n      break;\r\n\r\n    default:\r\n      break;\r\n  }\r\n\r\n  return (\r\n    <Accordion\r\n      expanded={open}\r\n      onChange={(_, isExpanded) => updateOpen(isExpanded)}\r\n    >\r\n      <AccordionSummary expandIcon={<ExpandMoreIcon />}>\r\n        <div style={styles.accordion}>\r\n          <Typography>Advanced Dataset Settings</Typography>\r\n          <Tooltip\r\n            placement=\"left\"\r\n            title={\r\n              \"Configure dataset creation settings for compatibility with different model configurations\"\r\n            }\r\n          >\r\n            <HelpOutlineIcon />\r\n          </Tooltip>\r\n        </div>\r\n      </AccordionSummary>\r\n      <AccordionDetails>\r\n        <Grid container spacing={3}>\r\n          {settings.map((setting, idx) => (\r\n            <Grid key={idx} item xs={12} sm={4}>\r\n              <FormControl fullWidth>{setting}</FormControl>\r\n            </Grid>\r\n          ))}\r\n        </Grid>\r\n      </AccordionDetails>\r\n    </Accordion>\r\n  );\r\n}\r\n\r\nAdvancedDatasetSettings.propTypes = {\r\n  open: PropTypes.bool.isRequired,\r\n  updateOpen: PropTypes.func.isRequired,\r\n  trainingDataType: PropTypes.oneOf(Object.values(TrainingDataTypes))\r\n    .isRequired,\r\n};\r\n\r\n/**\r\n * Advanced settings specific to the model. Should be closed by default.\r\n * Remaining props are passed on to child components.\r\n * @param {boolean} open Whether the accordion is open or not.\r\n * @param {function} updateOpen Function called to update the open state of the accordion in the parent component.\r\n * @returns {JSX.Element} The settings as an accordion component.\r\n */\r\nexport function AdvancedModelSettings(props) {\r\n  const { open, updateOpen } = props;\r\n\r\n  const settings = [\r\n    <BatchSizeSelection key={\"batch-size\"} {...props} />,\r\n    <EarlyStoppingLimitSelection key={\"early-stopping\"} {...props} />,\r\n    <LearningRateSelection key={\"learning-rate\"} {...props} />,\r\n    <LossFunctionSelection key={\"loss-function\"} {...props} />,\r\n    <MetricsSelection key={\"metrics\"} {...props} />,\r\n    <OptimizerSelection key={\"optimizer\"} {...props} />,\r\n  ];\r\n\r\n  return (\r\n    <Accordion\r\n      expanded={open}\r\n      onChange={(_, isExpanded) => updateOpen(isExpanded)}\r\n    >\r\n      <AccordionSummary expandIcon={<ExpandMoreIcon />}>\r\n        <div style={styles.accordion}>\r\n          <Typography>Advanced Model Settings</Typography>\r\n          <Tooltip\r\n            placement=\"left\"\r\n            title={\r\n              \"Independently configure model settings regardless of the dataset used.\"\r\n            }\r\n          >\r\n            <HelpOutlineIcon />\r\n          </Tooltip>\r\n        </div>\r\n      </AccordionSummary>\r\n      <AccordionDetails>\r\n        <Grid container spacing={3}>\r\n          {settings.map((setting, idx) => (\r\n            <Grid key={idx} item xs={12} sm={4}>\r\n              <FormControl fullWidth>{setting}</FormControl>\r\n            </Grid>\r\n          ))}\r\n        </Grid>\r\n      </AccordionDetails>\r\n    </Accordion>\r\n  );\r\n}\r\n\r\nAdvancedModelSettings.propTypes = {\r\n  open: PropTypes.bool.isRequired,\r\n  updateOpen: PropTypes.func.isRequired,\r\n};\r\n","// Copyright: HS Analysis GmbH, 2023\r\n// Author: Valentin Haas\r\n\r\n// Framework imports\r\nimport React from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\n// Material UI packages\r\n\r\n// HSA packages\r\nimport AITrainingSettings, {\r\n  trainingDataTypebyModuleName,\r\n} from \"../../../common/components/AITrainingSettings\";\r\n\r\nimport {\r\n  CommonlyUsedCategory,\r\n  AdvancedDatasetSettings,\r\n  AdvancedModelSettings,\r\n} from \"./SettingCategories\";\r\n\r\n/**\r\n * Grouped setting selection options for the model and dataset.\r\n * Depending on the project type, different relevant options are available.\r\n * @param {AITrainingSettings} trainingSettings The training settings for the AI model and dataset.\r\n * @param {function} setTrainingSettings Function to update the training settings.\r\n * @param {object} ome The OME metadata for an image.\r\n * @param {string} projectType The type of the project.\r\n * @returns {JSX.Element} Accordion components allowing to adjust the model and dataset settings.\r\n */\r\nexport default function ModelAndDatasetSettings(props) {\r\n  const { trainingSettings, setTrainingSettings, ome, projectType } = props;\r\n  const [openAccordion, setOpenAccordion] = React.useState(\"common\");\r\n  const trainingDataType = trainingDataTypebyModuleName(projectType);\r\n\r\n  return (\r\n    <>\r\n      <CommonlyUsedCategory\r\n        trainingSettings={trainingSettings}\r\n        setTrainingSettings={setTrainingSettings}\r\n        trainingDataType={trainingDataType}\r\n        open={openAccordion === \"common\"}\r\n        updateOpen={(isOpen) => setOpenAccordion(isOpen ? \"common\" : null)}\r\n      />\r\n      <AdvancedDatasetSettings\r\n        trainingSettings={trainingSettings}\r\n        setTrainingSettings={setTrainingSettings}\r\n        trainingDataType={trainingDataType}\r\n        ome={ome}\r\n        open={openAccordion === \"dataset\"}\r\n        updateOpen={(isOpen) => setOpenAccordion(isOpen ? \"dataset\" : null)}\r\n      />\r\n      <AdvancedModelSettings\r\n        trainingSettings={trainingSettings}\r\n        setTrainingSettings={setTrainingSettings}\r\n        open={openAccordion === \"model\"}\r\n        updateOpen={(isOpen) => setOpenAccordion(isOpen ? \"model\" : null)}\r\n      />\r\n    </>\r\n  );\r\n}\r\n\r\nModelAndDatasetSettings.propTypes = {\r\n  trainingSettings: PropTypes.instanceOf(AITrainingSettings).isRequired,\r\n  setTrainingSettings: PropTypes.func.isRequired,\r\n  ome: PropTypes.object,\r\n  projectType: PropTypes.string,\r\n};\r\n","// Copyright: HS Analysis GmbH, 2023\r\n// Author: Valentin Haas\r\n\r\n// Framework imports\r\nimport React, { useState, useEffect } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport { useHistory } from \"react-router-dom\";\r\n\r\n// External packages\r\n\r\n// HSA packages\r\nimport { parentStructures } from \"../../common/components/Structure\";\r\nimport Backend from \"../../common/utils/Backend\";\r\nimport AITrainingSettings, {\r\n  DefaultDatasetType,\r\n  DefaultDatasetApproach,\r\n  getModelParameters,\r\n  DatasetApproach,\r\n} from \"../../common/components/AITrainingSettings\";\r\nimport StepperDialog from \"../../common/components/StepperDialog\";\r\nimport ModelMetaData from \"./TrainAIModelComponents/ModelMetaData\";\r\nimport ModelTypeSelection from \"./TrainAIModelComponents/ModelTypeSelection\";\r\nimport StructureSelection from \"./TrainAIModelComponents/StructureSelection\";\r\nimport ModelAndDatasetSettings from \"./TrainAIModelComponents/ModelAndDatasetSettings\";\r\n\r\nimport { withSpinloader } from \"../../common/components/Spinloader\";\r\n\r\n// export default function TrainAIModel(props) {\r\nconst TrainAIModel = (props) => {\r\n  const {\r\n    open,\r\n    setOpen,\r\n    project,\r\n    structures = [],\r\n    setStructures = () => {},\r\n    ome,\r\n  } = props;\r\n  const history = useHistory();\r\n  const forceUpdate = React.useReducer(() => ({}))[1];\r\n\r\n  const [trainingSettings, setTrainingSettings] = useState(\r\n    new AITrainingSettings(project.id, project.type)\r\n  );\r\n\r\n  const [aiModels, setAiModels] = useState([]);\r\n  const [nameInUse, setNameInUse] = useState(false);\r\n  const [containsInvalidChar, setContainsInvalidChar] = useState(false);\r\n  const [allStructuresEnabled, setAllStructuresEnabled] = useState(false);\r\n\r\n  useEffect(() => {\r\n    Backend.getModelMetadata(\"hsa_models\", false, (models) => {\r\n      setAiModels(models);\r\n\r\n      // Set default dataset and model parameter types depending on project type.\r\n      setTrainingSettings((prev) => {\r\n        prev.datasetParameters.datasetType = DefaultDatasetType(project.type);\r\n        prev.datasetParameters.datasetApproach = DefaultDatasetApproach(\r\n          project.type\r\n        );\r\n        prev.modelParameters = getModelParameters(\r\n          prev.datasetParameters.datasetType\r\n        );\r\n        return prev;\r\n      });\r\n    });\r\n  }, []);\r\n\r\n  useEffect(() => {\r\n    validateMetaData(false);\r\n  }, [trainingSettings.metaData.name, trainingSettings.metaData.version]);\r\n\r\n  useEffect(() => {\r\n    if (\r\n      trainingSettings.datasetParameters.datasetApproach ===\r\n      DatasetApproach.AudioSlidingWindow\r\n    ) {\r\n      setTrainingSettings((prev) => {\r\n        prev.modelParameters.sequenceLengthSeconds = 5.0;\r\n        prev.modelParameters.sequenceOverlapSeconds = 0.0;\r\n        return prev;\r\n      });\r\n    } else if (\r\n      trainingSettings.datasetParameters.datasetApproach ===\r\n      DatasetApproach.AudioFileBased\r\n    ) {\r\n      setTrainingSettings((prev) => {\r\n        prev.modelParameters.sequenceLengthSeconds = 0.0;\r\n        prev.modelParameters.sequenceOverlapSeconds = 0.0;\r\n        return prev;\r\n      });\r\n    }\r\n  }, [trainingSettings.datasetParameters.datasetApproach]);\r\n\r\n  /**\r\n   * The steps of the dialog.\r\n   */\r\n  const steps = [\r\n    {\r\n      title: \"Select Model Type\",\r\n      content: (\r\n        <ModelTypeSelection\r\n          trainingSettings={trainingSettings}\r\n          setTrainingSettings={(params) => {\r\n            setTrainingSettings(params);\r\n            forceUpdate();\r\n          }}\r\n          projectType={project.type}\r\n        />\r\n      ),\r\n      validate: () => {\r\n        return validateModelType();\r\n      },\r\n    },\r\n    {\r\n      title: \"Select Structures\",\r\n      content: (\r\n        <StructureSelection\r\n          trainingSettings={trainingSettings}\r\n          setTrainingSettings={(params) => {\r\n            setTrainingSettings(params);\r\n            forceUpdate();\r\n          }}\r\n          project={project}\r\n          structures={structures}\r\n          setStructures={setStructures}\r\n          allStructuresEnabled={allStructuresEnabled}\r\n          setAllStructuresEnabled={setAllStructuresEnabled}\r\n        />\r\n      ),\r\n      validate: () => {\r\n        return validateStructureSelection();\r\n      },\r\n    },\r\n    {\r\n      title: \"Training Settings\",\r\n      content: (\r\n        <ModelAndDatasetSettings\r\n          trainingSettings={trainingSettings}\r\n          setTrainingSettings={(params) => {\r\n            setTrainingSettings(params);\r\n            forceUpdate();\r\n          }}\r\n          projectType={project.type}\r\n          ome={ome}\r\n        />\r\n      ),\r\n    },\r\n    {\r\n      title: \"Model Selection\",\r\n      content: (\r\n        <ModelMetaData\r\n          trainingSettings={trainingSettings}\r\n          setTrainingSettings={(params) => {\r\n            setTrainingSettings(params);\r\n            forceUpdate();\r\n          }}\r\n          existingAiModels={aiModels.models}\r\n          nameInUse={nameInUse}\r\n          containsInvalidChar={containsInvalidChar}\r\n          validateEntries\r\n        />\r\n      ),\r\n      validate: () => {\r\n        return validateMetaData();\r\n      },\r\n    },\r\n  ];\r\n\r\n  //#region Validation\r\n\r\n  /**\r\n   * Checks if a given modelname already exists.\r\n   * @param {string} valueToCheck The text to be checked.\r\n   * @returns {bool} Whether or not the name already exists.\r\n   */\r\n  const checkNameAvailibility = (valueToCheck) => {\r\n    if (aiModels.length === 0) return false;\r\n    return (\r\n      aiModels.models.findIndex((aiModel) => {\r\n        return aiModel.meta_data.name === valueToCheck;\r\n      }) >= 0\r\n    );\r\n  };\r\n\r\n  /**\r\n   * Checks if input string has forbidden characters.\r\n   * @param {string} input The text to be checked.\r\n   * @returns {bool} Whether or not a forbidden char is present.\r\n   */\r\n  const isInvalidInput = (input) => {\r\n    const invalidChars = /[&#\\\\/?:*\"|<>]/g;\r\n    return invalidChars.test(input);\r\n  };\r\n\r\n  /**\r\n   * Validates the metadata of the model. Relevant for the first step of the dialog.\r\n   * @param {bool} verbose Whether or not to show a warning snackbar in case of invalid metadata. Default: true.\r\n   * @returns {Promise} Whether or not the metadata is valid.\r\n   */\r\n  const validateMetaData = async (verbose = true) => {\r\n    return new Promise((resolve) => {\r\n      const localNameInUse = checkNameAvailibility(\r\n        trainingSettings.metaData.name\r\n      );\r\n      const localContainsInvalidChar = isInvalidInput(\r\n        trainingSettings.metaData.name\r\n      );\r\n      setNameInUse(localNameInUse);\r\n      setContainsInvalidChar(localContainsInvalidChar);\r\n\r\n      if (trainingSettings.metaData.isNewModel) {\r\n        // Check settings for a new model\r\n        const isValid =\r\n          trainingSettings.metaData.name !== \"\" &&\r\n          !localNameInUse &&\r\n          !localContainsInvalidChar;\r\n\r\n        if (verbose && !isValid)\r\n          window.showWarningSnackbar(\r\n            \"Incomplete or invalid metadata, please check your inputs.\"\r\n          );\r\n\r\n        resolve(isValid);\r\n      } else {\r\n        // Check settings for retraining an existing model\r\n        const isValid =\r\n          trainingSettings.metaData.name !== \"\" &&\r\n          trainingSettings.metaData.version !== \"\";\r\n\r\n        if (verbose && !isValid)\r\n          window.showWarningSnackbar(\r\n            \"Incomplete or invalid metadata, please check your inputs.\"\r\n          );\r\n\r\n        resolve(isValid);\r\n      }\r\n    });\r\n  };\r\n\r\n  const validateModelType = async () => {\r\n    return new Promise((resolve) => {\r\n      const isValid =\r\n        Boolean(trainingSettings.datasetParameters.datasetType) ||\r\n        trainingSettings.datasetParameters.datasetType === 0;\r\n\r\n      if (!isValid)\r\n        window.showWarningSnackbar(\r\n          \"Incomplete or invalid model type, please check your inputs.\"\r\n        );\r\n\r\n      resolve(isValid);\r\n    });\r\n  };\r\n\r\n  const validateStructureSelection = async () => {\r\n    return new Promise((resolve) => {\r\n      if (allStructuresEnabled) {\r\n        // Anything goes.\r\n        resolve(true);\r\n        return;\r\n      }\r\n      const parentsNotChosen = !structures\r\n        .filter((s) => s.isChosen)\r\n        // Check that a chosen Structure does not have a chosen parent.\r\n        .some((s) => {\r\n          // Remove last item from array, as it is the structure itself.\r\n          return parentStructures(s, structures)\r\n            .slice(0, -1)\r\n            .some((p) => p.isChosen);\r\n        });\r\n\r\n      if (!parentsNotChosen)\r\n        window.showWarningSnackbar(\r\n          \"Structures cannot be chosen if one of their parents is also chosen.\"\r\n        );\r\n\r\n      // Check that at least one structure is chosen.\r\n      const anyStructureChosen = structures.some((s) => s.isChosen);\r\n\r\n      if (!anyStructureChosen)\r\n        window.showWarningSnackbar(\"Please choose at least one structure.\");\r\n\r\n      resolve(parentsNotChosen && anyStructureChosen);\r\n    });\r\n  };\r\n\r\n  /**\r\n   * Validates the settings of all steps using the validate() function of each step, if it exists.\r\n   * @returns {int} The index of the first step that is invalid. -1 if all steps are valid.\r\n   */\r\n  const validateAllSettings = async () => {\r\n    Promise.resolve(\r\n      steps.findIndex((step) => {\r\n        if (!(\"validate\" in Object.keys(step))) return false;\r\n        return !step.validate();\r\n      })\r\n    );\r\n  };\r\n  //#endregion\r\n  //#region Actions between steps\r\n\r\n  const extractSettings = () => {\r\n    // Only relevant if an existing model is used.\r\n    if (trainingSettings.metaData.isNewModel) {\r\n      return;\r\n    }\r\n\r\n    const modelUsed = aiModels.find(\r\n      (aiModel) => aiModel.name === trainingSettings.metaData.name\r\n    );\r\n\r\n    const versionUsed = modelUsed.versions.find(\r\n      (version) => version.label === trainingSettings.metaData.version\r\n    );\r\n\r\n    console.log(versionUsed);\r\n\r\n    setTrainingSettings(trainingSettings);\r\n  };\r\n\r\n  const actionsBetweenSteps = (stepNo) => {\r\n    switch (stepNo) {\r\n      case 0:\r\n        extractSettings();\r\n        break;\r\n      default:\r\n        break;\r\n    }\r\n  };\r\n\r\n  //#endregion\r\n\r\n  const submit = async () => {\r\n    // Start training.\r\n    Backend.trainModel(trainingSettings);\r\n\r\n    setOpen(false);\r\n    // Check if all steps are valid.\r\n    const firstInvalidStep = await validateAllSettings();\r\n    if (firstInvalidStep >= 0) {\r\n      return firstInvalidStep;\r\n    }\r\n\r\n    window.showSuccessSnackbar(\"Sent training parameters.\");\r\n    props.spinloader.show();\r\n\r\n    // Create a promise that resolves when the Socket.IO message is received.\r\n    const socketMessagePromise = new Promise((resolve) => {\r\n      const socket = Backend.getSocket();\r\n      socket.on(\"training_queued\", () => {\r\n        props.spinloader.hide();\r\n        resolve();\r\n      });\r\n    });\r\n\r\n    // Wait for the Socket.IO message to be received.\r\n    await socketMessagePromise;\r\n\r\n    window.showActionSnackbar(\r\n      \"Queued training.\",\r\n      () => history.push(\"/ai_view\"),\r\n      \"Go to AI View\",\r\n      \"Stay here\"\r\n    );\r\n  };\r\n\r\n  return (\r\n    <StepperDialog\r\n      isOpen={open}\r\n      setOpen={setOpen}\r\n      steps={steps}\r\n      onNext={actionsBetweenSteps}\r\n      onSubmit={submit}\r\n      submitMessage={\r\n        trainingSettings.datasetParameters.datasetOnly ? \"Dataset\" : \"Train\"\r\n      }\r\n    />\r\n  );\r\n};\r\n\r\nTrainAIModel.propTypes = {\r\n  open: PropTypes.bool,\r\n  setOpen: PropTypes.func.isRequired,\r\n  project: PropTypes.object.isRequired,\r\n  structures: PropTypes.array,\r\n  setStructures: PropTypes.func,\r\n  ome: PropTypes.object,\r\n  spinloader: PropTypes.object,\r\n};\r\n\r\nexport default withSpinloader(TrainAIModel);\r\n","// Framework imports\r\nimport React, { useState } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport { Button } from \"@mui/material\";\r\n\r\n// HSA imports\r\nimport TrainAIModel from \"../../home/dialogs/TrainAIModel\";\r\n\r\n/**\r\n *\r\n * @param {object} project The current project.\r\n * @param {array} structures The structures of the current project.\r\n * @param {function} setStructures The function to set/update the structures of the current project.\r\n * @returns {JSX.Element} The AI training tab.\r\n */\r\nexport default function AiTrainingTab(props) {\r\n  const { project, structures, setStructures, ome } = props;\r\n  const [openTrainingDialog, setOpenTrainingDialog] = useState(false);\r\n\r\n  return (\r\n    <div style={{ margin: \"10px\" }}>\r\n      <Button\r\n        fullWidth\r\n        variant=\"contained\"\r\n        color=\"primary\"\r\n        onClick={() => {\r\n          setOpenTrainingDialog(true);\r\n        }}\r\n      >\r\n        Train AI\r\n      </Button>\r\n      <TrainAIModel\r\n        open={openTrainingDialog}\r\n        setOpen={setOpenTrainingDialog}\r\n        project={project}\r\n        structures={structures}\r\n        setStructures={setStructures}\r\n        ome={ome}\r\n      />\r\n    </div>\r\n  );\r\n}\r\n\r\nAiTrainingTab.propTypes = {\r\n  project: PropTypes.object.isRequired,\r\n  structures: PropTypes.array,\r\n  setStructures: PropTypes.func,\r\n  ome: PropTypes.object,\r\n};\r\n\r\nAiTrainingTab.defaultProps = {\r\n  structures: [],\r\n  setStructures: () => {},\r\n};\r\n","// Framework imports\r\nimport React, { useState, useEffect } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\n// External packages\r\nimport DockLayout from \"rc-dock\";\r\nimport \"rc-dock/dist/rc-dock.css\";\r\n\r\n// HSA imports\r\nimport \"./AudioSideBarDock.css\";\r\nimport Structure from \"../../common/components/Structure\";\r\nimport StructureTree from \"./StructureTree\";\r\nimport AudioFileTree from \"./AudioFileTree\";\r\nimport AiTrainingTab from \"./AiTrainingTab\";\r\n\r\nconst Context = React.createContext();\r\n\r\nfunction AudioSideBarDock(props) {\r\n  const [init, setInit] = useState(false);\r\n  const [layout, setLayout] = useState({\r\n    dockbox: {\r\n      mode: \"horizontal\",\r\n      children: [\r\n        {\r\n          tabs: [\r\n            { id: \"filesTab\" },\r\n            { id: \"structureTreeTab\" },\r\n            { id: \"aiTrainingTab\" },\r\n          ],\r\n        },\r\n      ],\r\n    },\r\n  });\r\n\r\n  let groups = {\r\n    custom: {\r\n      floatable: false,\r\n      maximizable: false,\r\n    },\r\n  };\r\n\r\n  const filesTab = {\r\n    title: <div>FILES</div>,\r\n    content: <Context.Consumer>{() => <AudioFileTree />}</Context.Consumer>,\r\n    group: \"custom\",\r\n  };\r\n\r\n  const structureTreeTab = {\r\n    title: <div>ROIS</div>,\r\n    content: (\r\n      <Context.Consumer>\r\n        {(value) => (\r\n          <StructureTree\r\n            user={value.user}\r\n            project={value.project}\r\n            structures={value.structures}\r\n            setStructures={value.setStructures}\r\n            selectedStructure={value.selectedStructure}\r\n            setSelectedStructure={value.setSelectedStructure}\r\n            triggerAction={value.triggerAction}\r\n          />\r\n        )}\r\n      </Context.Consumer>\r\n    ),\r\n    group: \"custom\",\r\n  };\r\n\r\n  const aiTrainingTab = {\r\n    title: <div>AI</div>,\r\n    content: (\r\n      <Context.Consumer>\r\n        {(value) => (\r\n          <AiTrainingTab\r\n            project={value.project}\r\n            structures={value.structures}\r\n            setStructures={value.setStructures}\r\n          />\r\n        )}\r\n      </Context.Consumer>\r\n    ),\r\n  };\r\n\r\n  useEffect(() => {\r\n    if (!init) {\r\n      setInit(true);\r\n    }\r\n  });\r\n\r\n  const loadTab = (data) => {\r\n    let { id } = data;\r\n    switch (id) {\r\n      case \"structureTreeTab\":\r\n        return { ...structureTreeTab, id };\r\n      case \"filesTab\":\r\n        return { ...filesTab, id };\r\n      case \"aiTrainingTab\":\r\n        return { ...aiTrainingTab, id };\r\n    }\r\n    return { ...structureTreeTab, id };\r\n  };\r\n\r\n  const onLayoutChange = (newLayout) => {\r\n    let newChilds = newLayout.dockbox.children;\r\n    let oldChilds = layout.dockbox.children;\r\n    if (JSON.stringify(newChilds) !== JSON.stringify(oldChilds)) {\r\n      setLayout(newLayout);\r\n      //   props.persistentStorage.save(\"SidebarLayout\", newLayout);\r\n    }\r\n  };\r\n\r\n  return (\r\n    <Context.Provider value={props}>\r\n      <DockLayout\r\n        layout={layout}\r\n        loadTab={loadTab}\r\n        onLayoutChange={onLayoutChange}\r\n        groups={groups}\r\n        style={{\r\n          position: \"relative\",\r\n        }}\r\n      />\r\n    </Context.Provider>\r\n  );\r\n}\r\n\r\nexport default AudioSideBarDock; //withPersistentStorage(AudioSideBarDock);\r\n\r\nAudioSideBarDock.propTypes = {\r\n  persistentStorage: PropTypes.object,\r\n  project: PropTypes.object.isRequired,\r\n  user: PropTypes.object,\r\n  structures: PropTypes.array,\r\n  setStructures: PropTypes.func,\r\n  selectedStructure: PropTypes.instanceOf(Structure),\r\n  setSelectedStructure: PropTypes.func,\r\n  triggerAction: PropTypes.func,\r\n};\r\n","// Framework imports\r\nimport React, { useContext } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\n// Additional pacakges\r\nimport { Grid } from \"@mui/material\";\r\n\r\n// HSA imports\r\nimport { AudioViewerContext } from \"./AudioViewer\";\r\nimport { AnnotationAction } from \"../common/components/RoiTypes\";\r\nimport Structure from \"../common/components/Structure\";\r\n// import StructureTree from \"./sidebar/StructureTree\";\r\nimport AudioSideBarDock from \"./sidebar/AudioSideBarDock\";\r\n\r\n/**\r\n * Collected (reusable) styles for page elements.\r\n */\r\nconst styles = {\r\n  root: {\r\n    padding: \"5px\",\r\n    height: \"100%\",\r\n    background: \"#fff\",\r\n    borderLeft: \"5px solid  #EBEBEB\",\r\n    display: \"grid\",\r\n    gridTemplateRows: \"auto\",\r\n    overflowY: \"auto\",\r\n  },\r\n};\r\n\r\n/**\r\n * Sidebar with all detailed functions for the audio viewer.\r\n * Equivalent to the sidebar in the image viewer, only for audio options.\r\n * @param {bool} hide Is the sidebar hidden? Defaults to false.\r\n * @param {number} width The overall width of the sidebar.\r\n * @returns React node for Audio Sidebar\r\n */\r\nexport default function AudioSideBar(props) {\r\n  const { hide = false, width = 455, ...other } = props;\r\n  const AudioViewer = useContext(AudioViewerContext);\r\n\r\n  /**\r\n   * Trigger a save event for all annotations of a structure.\r\n   * @param {Structure} structure The structure to save annotations for.\r\n   */\r\n  const triggerAction = (structure, action) => {\r\n    if (!(structure instanceof Structure))\r\n      throw TypeError(\r\n        `structure must be of type Structure, recieved ${typeof structure}: ${structure}`\r\n      );\r\n    if (!Object.values(AnnotationAction).includes(action)) {\r\n      throw TypeError(`Invalid action, received ${typeof action}: ${action}`);\r\n    }\r\n\r\n    // Do not trigger event twice.\r\n    if (\r\n      AudioViewer.childActions.some(\r\n        (a) =>\r\n          a.fileId === AudioViewer.selectedFile.id &&\r\n          a.structureId === structure.id &&\r\n          a.task === action\r\n      )\r\n    )\r\n      return;\r\n\r\n    AudioViewer.setChildActions([\r\n      ...AudioViewer.childActions,\r\n      {\r\n        fileId: AudioViewer.selectedFile.id,\r\n        structureId: structure.id,\r\n        task: action,\r\n      },\r\n    ]);\r\n  };\r\n\r\n  return hide ? (\r\n    <></>\r\n  ) : (\r\n    <Grid sx={{ ...other.style, ...other.sx, ...styles.root, width: width }}>\r\n      <AudioSideBarDock\r\n        user={AudioViewer.user}\r\n        project={AudioViewer.project}\r\n        structures={AudioViewer.structures}\r\n        setStructures={AudioViewer.setStructures}\r\n        selectedStructure={AudioViewer.selectedStructure}\r\n        setSelectedStructure={(s) => AudioViewer.setSelectedStructure(s)}\r\n        triggerAction={triggerAction}\r\n      />\r\n    </Grid>\r\n  );\r\n}\r\n\r\nAudioSideBar.propTypes = {\r\n  hide: PropTypes.bool,\r\n  width: PropTypes.number,\r\n};\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n// define the component's styling\r\nconst styles = () => ({\r\n  resizesBorder: {\r\n    height: \"100%\",\r\n    width: \"100%\",\r\n    cursor: \"col-resize\",\r\n  },\r\n  //invisible over whole screen, so mouse is always tracked\r\n  overlayBorder: {\r\n    position: \"fixed\",\r\n    top: 0,\r\n    left: 0,\r\n    width: \"100%\",\r\n    height: \"100%\",\r\n    zIndex: 9999999,\r\n    cursor: \"col-resize\",\r\n  },\r\n});\r\n\r\nclass LocalVerticalResizeBorder extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n    this.state = {\r\n      resizeMode: false,\r\n      borderWidth: 8,\r\n      newWidth: props.targetWidth,\r\n    };\r\n  }\r\n\r\n  handleMouseDown = (e) => {\r\n    this.setState({ resizeMode: true, lastPageX: e.pageX, initPageX: e.pageX });\r\n  };\r\n\r\n  handleMouseMove = (e) => {\r\n    e.preventDefault();\r\n    if (!this.state.resizeMode) return;\r\n\r\n    const deltaX = this.props.leftBorder\r\n      ? this.state.lastPageX - e.pageX\r\n      : e.pageX - this.state.lastPageX;\r\n    const newWidth = this.state.newWidth + deltaX;\r\n\r\n    // No min set\r\n    if (this.props.min === undefined) {\r\n      this.setState({ lastPageX: e.pageX, newWidth });\r\n      return;\r\n    }\r\n\r\n    if (newWidth > this.props.min) {\r\n      this.props.resizeWidth(newWidth);\r\n    } else if (this.props.targetWidth > this.props.min) {\r\n      this.props.resizeWidth(this.props.min);\r\n    }\r\n\r\n    this.setState({ lastPageX: e.pageX, newWidth });\r\n  };\r\n\r\n  handleMouseEnd = () => {\r\n    if (!this.state.resizeMode) return;\r\n\r\n    this.setState({ resizeMode: false });\r\n    this.props.resizeWidth(this.props.targetWidth);\r\n  };\r\n\r\n  render() {\r\n    const { classes } = this.props;\r\n    //const { borderWidth } = this.state;\r\n    return (\r\n      <div\r\n        style={{\r\n          height: \"100%\",\r\n          width: 8,\r\n          zIndex: 1,\r\n        }}\r\n      >\r\n        <div\r\n          className={\r\n            this.state.resizeMode\r\n              ? classes.overlayBorder\r\n              : classes.resizesBorder\r\n          }\r\n          onMouseDown={(e) => this.handleMouseDown(e)}\r\n          onMouseMove={(e) => this.handleMouseMove(e)}\r\n          onMouseLeave={(e) => this.handleMouseEnd(e)}\r\n          onMouseUp={(e) => this.handleMouseEnd(e)}\r\n        ></div>\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\n// define the component's interface\r\nLocalVerticalResizeBorder.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  resizeWidth: PropTypes.func.isRequired,\r\n  targetWidth: PropTypes.number.isRequired,\r\n  min: PropTypes.number,\r\n  leftBorder: PropTypes.bool,\r\n};\r\n\r\nexport default withStyles(styles)(LocalVerticalResizeBorder);\r\n","// Framework components\r\nimport React, { createContext, useState, useEffect, useRef } from \"react\";\r\nimport { PropTypes } from \"prop-types\";\r\n\r\n// Additional packages\r\nimport { Grid } from \"@mui/material\";\r\n\r\n// HSA KIT components\r\nimport Backend from \"../common/utils/Backend\";\r\nimport { sortStructures } from \"../common/components/Structure\";\r\n\r\n// AudioViewer components\r\nimport AudioRenderer from \"./AudioRenderer\";\r\nimport AudioToolBar from \"./AudioToolBar\";\r\nimport AudioSideBar from \"./AudioSideBar\";\r\nimport LocalVerticalResizeBorder from \"../common/components/LocalVerticalResizeBorder\";\r\n\r\n/**\r\n * Collected (reusable) styles for page elements.\r\n */\r\nconst styles = {\r\n  root: {\r\n    width: \"100%\",\r\n    height: \"100%\",\r\n    background: \"#EBEBEB\",\r\n    overflow: \"hidden\",\r\n    position: \"relative\",\r\n    display: \"grid\",\r\n  },\r\n};\r\n\r\n/**\r\n * Makes selected data available for all children of AudioViewer.\r\n * Used for information that must be synced over all components per project,\r\n * such as structures and project id.\r\n */\r\nexport const AudioViewerContext = createContext();\r\n\r\n/**\r\n * The minimum width of the sidebar from the right side in px.\r\n */\r\nconst MIN_SIDEBAR_WIDTH = 455;\r\n\r\n/**\r\n * Overall parent component for Audio Viewer.\r\n * This component contains all parts of the audio viewer and will be called with the /audio_view route.\r\n */\r\nexport default function AudioViewer({ projectId }) {\r\n  const project = useRef({});\r\n  const forceUpdate = React.useReducer(() => ({}))[1];\r\n  const [sideBarWidth, setSideBarWidth] = useState(MIN_SIDEBAR_WIDTH);\r\n  const [hideSideBar, setHideSideBar] = useState(false);\r\n  const [user, setUser] = useState(null);\r\n  const [saveNow, triggerSave] = useState(false);\r\n\r\n  const [files, setFiles] = useState([]);\r\n  const [savedFiles, setSavedFiles] = useState({});\r\n  const [selectedFile, setSelectedFile] = useState(null);\r\n\r\n  const [structures, setStructures] = useState([]);\r\n  const structuresRef = useRef(structures);\r\n  const [allStructuresSaved, setAllStructuresSaved] = useState(true);\r\n  const allStructuresSavedRef = useRef(allStructuresSaved);\r\n  const [selectedStructure, setSelectedStructure] = useState(null);\r\n\r\n  const [childActions, setChildActions] = useState([]);\r\n  const [excludeToolActive, setExcludeToolActive] = useState(false);\r\n\r\n  const [isDrawing, setIsDrawing] = useState(false);\r\n  const [containerWidth, setContainerWidth] = useState(0);\r\n\r\n  useEffect(() => {\r\n    Backend.loadProject(\r\n      {\r\n        id: projectId,\r\n        isOpenProject: true,\r\n      },\r\n      (incomingProject) => {\r\n        project.current = incomingProject;\r\n        setFiles(incomingProject.files);\r\n        setSelectedFile(incomingProject.files[0] ?? null);\r\n        window.setNavigationbarTitle(\r\n          `${incomingProject.name} (${incomingProject.viewerConfig.project.label})`\r\n        );\r\n      },\r\n      (err) => {\r\n        console.error(err);\r\n        window.openErrorDialog(err.toString());\r\n      }\r\n    );\r\n\r\n    Backend.getCurrentUser((user) => setUser(user));\r\n    Backend.loadStructures(\r\n      projectId,\r\n      (structures) => setStructures(sortStructures(structures)),\r\n      (err) => console.error(err)\r\n    );\r\n\r\n    // Save-reminder every 10 minutes.\r\n    const saveReminder = setInterval(\r\n      () =>\r\n        window.showActionSnackbar(\r\n          \"Would you like to save your annotations?\",\r\n          () => saveProject(),\r\n          \"Save now\",\r\n          \"Dismiss\"\r\n        ),\r\n      10 * 60 * 1000\r\n    );\r\n\r\n    // add an event listener to the window object to listen for resize events\r\n    window.addEventListener(\"resize\", handleResize);\r\n\r\n    return () => {\r\n      // remove the event listener to clean up\r\n      window.removeEventListener(\"resize\", handleResize);\r\n      clearInterval(saveReminder);\r\n      Backend.closeProject(\r\n        projectId,\r\n        () => {},\r\n        (err) =>\r\n          console.warn(`Could not perform all closing actions: \\n\\n ${err}`)\r\n      );\r\n    };\r\n  }, []);\r\n\r\n  /**\r\n   * Allow functions defined on load to use latest state\r\n   */\r\n  useEffect(() => {\r\n    structuresRef.current = structures;\r\n    allStructuresSavedRef.current = allStructuresSaved;\r\n  }, [allStructuresSaved, structures]);\r\n\r\n  // Update savestatus array on change of files\r\n  useEffect(() => {\r\n    setSavedFiles((prevSaveStatus) => {\r\n      let newSaveStatus = prevSaveStatus;\r\n      files.forEach((f) => {\r\n        // Files begin as saved\r\n        newSaveStatus[f.id] =\r\n          f.id in newSaveStatus ? newSaveStatus[f.id] : true;\r\n      });\r\n      return newSaveStatus;\r\n    });\r\n  }, [files]);\r\n\r\n  useEffect(() => {\r\n    handleResize();\r\n  }, [sideBarWidth, hideSideBar]);\r\n\r\n  // specify what should happen when the window is resized\r\n  const handleResize = () => {\r\n    const currentSideBarWidth = hideSideBar ? 0 : sideBarWidth;\r\n    let newWidth = window.innerWidth - currentSideBarWidth;\r\n    // your resize handling code here\r\n    setContainerWidth(newWidth);\r\n  };\r\n\r\n  /**\r\n   * Updates the status of files when modifying and/or saving.\r\n   * @param {uuid} fileId File id of status to update.\r\n   * @param {bool} fileSaveStatus New save status. true = saved, false = not saved.\r\n   */\r\n  const reportFileSaveStatus = (fileId, fileSaveStatus) => {\r\n    let tmpSaveStatus = savedFiles;\r\n    tmpSaveStatus[fileId] = fileSaveStatus;\r\n    setSavedFiles(tmpSaveStatus);\r\n\r\n    // Check if any file is unsaved\r\n    const allFilesSaved = !Object.values(savedFiles).some((val) => !val);\r\n    if (allFilesSaved) {\r\n      window.showSuccessSnackbar(\"Successfully saved all annotations.\");\r\n    }\r\n  };\r\n\r\n  /**\r\n   * Saves project, including structures.\r\n   */\r\n  const saveProject = () => {\r\n    // Save structures\r\n    if (!allStructuresSavedRef.current) {\r\n      console.debug(\"Saving structures...\");\r\n      Backend.saveStructures(\r\n        projectId,\r\n        structuresRef.current,\r\n        () => {\r\n          window.showSuccessSnackbar(\"Successfully saved all structures.\");\r\n          setAllStructuresSaved(true);\r\n        },\r\n        (err) => {\r\n          window.showErrorSnackbar(\r\n            `Could not save structures of project\"${projectId}\": ${err}`\r\n          );\r\n          console.warn(err);\r\n        }\r\n      );\r\n    }\r\n    triggerSave(true);\r\n  };\r\n\r\n  // Reset save status\r\n  useEffect(() => {\r\n    if (!saveNow) return;\r\n    triggerSave(false);\r\n  }, [saveNow]);\r\n\r\n  const toggleSideBar = () => {\r\n    setHideSideBar(!hideSideBar);\r\n    handleResize();\r\n  };\r\n\r\n  const updateFiles = (files) => {\r\n    setFiles(files);\r\n    forceUpdate();\r\n  };\r\n\r\n  const updateSelectedFile = (file) => {\r\n    saveProject();\r\n    setTimeout(() => setSelectedFile(file), 0);\r\n  };\r\n\r\n  /**\r\n   * Global context for project\r\n   */\r\n  const context = {\r\n    project: project.current,\r\n    containerWidth,\r\n    user,\r\n    saveNow,\r\n    saveProject,\r\n    sideBarWidth,\r\n    setSideBarWidth,\r\n    toggleSideBar,\r\n    triggerSave,\r\n    reportFileSaveStatus,\r\n    structures,\r\n    setStructures: (structures) => {\r\n      setStructures(structures);\r\n      setAllStructuresSaved(false);\r\n    },\r\n    selectedStructure,\r\n    setSelectedStructure,\r\n    selectedFile,\r\n    updateSelectedFile,\r\n    childActions,\r\n    setChildActions,\r\n    excludeToolActive,\r\n    setExcludeToolActive,\r\n    isDrawing,\r\n    setIsDrawing,\r\n    updateFiles,\r\n  };\r\n\r\n  return (\r\n    <Grid\r\n      container\r\n      sx={{\r\n        ...styles.root,\r\n        gridTemplateColumns: `1fr auto 3px auto`,\r\n      }}\r\n    >\r\n      <AudioViewerContext.Provider value={context}>\r\n        <AudioRenderer files={selectedFile ? [selectedFile] : []} />\r\n        <AudioToolBar save={saveProject} />\r\n        <LocalVerticalResizeBorder\r\n          targetWidth={sideBarWidth}\r\n          resizeWidth={setSideBarWidth}\r\n          min={MIN_SIDEBAR_WIDTH}\r\n          leftBorder={true}\r\n        />\r\n        <AudioSideBar hide={hideSideBar} width={sideBarWidth} />\r\n      </AudioViewerContext.Provider>\r\n    </Grid>\r\n  );\r\n}\r\n\r\nAudioViewer.propTypes = {\r\n  projectId: PropTypes.string.isRequired,\r\n};\r\n","// Framework components\r\nimport React, { useEffect } from \"react\";\r\nimport { PropTypes } from \"prop-types\";\r\nimport { useState } from \"react\";\r\n\r\n// Material UI components\r\nimport {\r\n  ListItemButton,\r\n  ListItemText,\r\n  LinearProgress,\r\n  Button,\r\n  ListItemSecondaryAction,\r\n  Tooltip,\r\n} from \"@mui/material\";\r\n\r\n// HSA components\r\nimport Backend from \"../../common/utils/Backend\";\r\n\r\n/**\r\n * List item from list models in AI Viewer.\r\n */\r\nexport default function AIModelListItem({\r\n  loading,\r\n  name,\r\n  progress,\r\n  onStopTraining,\r\n  selected,\r\n  model,\r\n  setSelectedModel,\r\n}) {\r\n  const [isHovered, setIsHovered] = useState(false);\r\n  const [datasetProgress, setDatasetProgress] = useState(0.0);\r\n  const [trainingEpochProgress, setTrainingEpochProgress] = useState(0.0);\r\n  const [trainingStatus, setTrainingStatus] = useState(\r\n    model.information.trainingStatus\r\n  );\r\n\r\n  const getTrainingEpochProgress = () => {\r\n    // get training epoch progress\r\n    if (trainingStatus == \"running\") {\r\n      Backend.getTrainingEpochProgress(name, (res) => {\r\n        setTrainingEpochProgress(parseFloat(res));\r\n      });\r\n    }\r\n  };\r\n\r\n  useEffect(() => {\r\n    const socket = Backend.getSocket();\r\n    // get dataset progress\r\n    socket.on(\"dataset_progress\", (data) => {\r\n      const dataObj = JSON.parse(data);\r\n      if (dataObj.model_name != name) return;\r\n      setDatasetProgress(dataObj.progress);\r\n    });\r\n\r\n    // get training status\r\n    socket.on(\"training_status\", (data) => {\r\n      const dataObj = JSON.parse(data);\r\n      if (dataObj.model_name != name) return;\r\n      setTrainingStatus(dataObj.status);\r\n    });\r\n\r\n    // check for training progress every 10 seconds\r\n    getTrainingEpochProgress();\r\n    setInterval(getTrainingEpochProgress, 10 * 1000);\r\n\r\n    return () => {\r\n      // Clean up the effect\r\n      socket.disconnect();\r\n    };\r\n  }, []);\r\n\r\n  const renderState = () => {\r\n    switch (true) {\r\n      case trainingStatus == \"pending\":\r\n        return <span>Pending</span>;\r\n      case trainingStatus == \"creating dataset\":\r\n        return (\r\n          <>\r\n            <span>\r\n              <span style={{ marginRight: \"8px\" }}>Creating Dataset</span>\r\n              <LinearProgress\r\n                variant=\"determinate\"\r\n                value={datasetProgress}\r\n                style={{ width: \"50%\" }}\r\n              />\r\n            </span>\r\n          </>\r\n        );\r\n      case trainingStatus == \"running\":\r\n        return (\r\n          <>\r\n            <span>\r\n              <span style={{ marginRight: \"8px\" }}>Training Running</span>\r\n              <LinearProgress\r\n                variant=\"determinate\"\r\n                value={Number(\r\n                  (trainingEpochProgress /\r\n                    model.settings.trainingParameters.epochs) *\r\n                    100\r\n                )}\r\n                style={{ width: \"50%\" }}\r\n              />\r\n            </span>\r\n          </>\r\n        );\r\n      case trainingStatus == \"finished\":\r\n        return <span style={{ color: \"green\" }}>Finished Training</span>;\r\n      case trainingStatus == \"created dataset\":\r\n        return <span style={{ color: \"green\" }}>Created Dataset</span>;\r\n      case trainingStatus.includes(\"error\"):\r\n        return (\r\n          <Tooltip title={model.information.errorMessage.split(\" - \")[0]}>\r\n            <span style={{ color: \"red\" }}>Error</span>\r\n          </Tooltip>\r\n        );\r\n      default:\r\n        return \"\";\r\n    }\r\n  };\r\n\r\n  return (\r\n    <ListItemButton\r\n      style={{\r\n        borderBottom: \"1px solid #ccc\",\r\n        backgroundColor: isHovered || selected ? \"#f5f5f5\" : \"inherit\",\r\n        cursor: isHovered ? \"pointer\" : \"default\",\r\n      }}\r\n      onMouseEnter={() => setIsHovered(true)}\r\n      onMouseLeave={() => setIsHovered(false)}\r\n      onClick={() => setSelectedModel(name)}\r\n      disabled={loading}\r\n      disableRipple\r\n    >\r\n      <ListItemText\r\n        primary={\r\n          <span\r\n            style={{\r\n              display: \"flex\",\r\n              alignItems: \"center\",\r\n              userSelect: \"none\",\r\n            }}\r\n          >\r\n            <span style={{ marginRight: \"8px\" }}>\r\n              {name.replace(\"Custom - \", \"\")}\r\n            </span>\r\n          </span>\r\n        }\r\n        secondary={renderState()}\r\n      />\r\n      {progress > 0 && progress < 100 && (\r\n        <ListItemSecondaryAction>\r\n          <Button onClick={onStopTraining} color=\"secondary\">\r\n            Stop Training\r\n          </Button>\r\n        </ListItemSecondaryAction>\r\n      )}\r\n    </ListItemButton>\r\n  );\r\n}\r\n\r\nAIModelListItem.propTypes = {\r\n  loading: PropTypes.bool,\r\n  name: PropTypes.string,\r\n  state: PropTypes.oneOf([\"finished\", \"running\", \"pending\"]),\r\n  progress: PropTypes.number,\r\n  onStopTraining: PropTypes.func,\r\n  selected: PropTypes.bool,\r\n  model: PropTypes.object,\r\n  setSelectedModel: PropTypes.func,\r\n};\r\n","// Framework components\r\nimport React from \"react\";\r\nimport { PropTypes } from \"prop-types\";\r\n\r\n// Material UI components\r\nimport { List } from \"@mui/material\";\r\n\r\n// Custom components\r\nimport AIModelListItem from \"./AIModelListItem\";\r\nimport \"./AIModelsList.css\";\r\n\r\n/**\r\n * List of models in AI Viewer.\r\n */\r\nexport default function AIModelsList({\r\n  loading,\r\n  AIModels,\r\n  selectedModel,\r\n  setSelectedModel,\r\n}) {\r\n  const handleStopTraining = () => {\r\n    // Dummy function for stopping training\r\n    console.log(\"Stopping training...\");\r\n  };\r\n\r\n  return (\r\n    <List style={{ paddingTop: \"0px\", paddingBottom: \"0px\" }}>\r\n      <div className=\"scrollable-sidebar\">\r\n        {AIModels.map((item, index) => (\r\n          <AIModelListItem\r\n            key={index}\r\n            name={item.settings.metaData.name}\r\n            onStopTraining={() => handleStopTraining(index)}\r\n            selected={item.settings.metaData.name === selectedModel}\r\n            model={item}\r\n            setSelectedModel={setSelectedModel}\r\n            AIModels={AIModels}\r\n            loading={loading}\r\n          />\r\n        ))}\r\n      </div>\r\n    </List>\r\n  );\r\n}\r\n\r\nAIModelsList.propTypes = {\r\n  loading: PropTypes.bool,\r\n  AIModels: PropTypes.array.isRequired,\r\n  selectedModel: PropTypes.string,\r\n  setSelectedModel: PropTypes.func,\r\n};\r\n","// Framework components\r\nimport { React, useState } from \"react\";\r\nimport { PropTypes } from \"prop-types\";\r\nimport IconButton from \"@mui/material/IconButton\";\r\n// import FilterListIcon from \"@mui/icons-material/FilterList\";\r\nimport SearchIcon from \"@mui/icons-material/Search\";\r\nimport ResetIcon from \"@mui/icons-material/Replay\";\r\nimport InputBase from \"@mui/material/InputBase\";\r\nimport Paper from \"@mui/material/Paper\";\r\nimport { makeStyles } from \"@mui/styles\";\r\nimport {\r\n  TextField,\r\n  MenuItem,\r\n  Dialog,\r\n  DialogTitle,\r\n  DialogContent,\r\n  Chip,\r\n} from \"@mui/material\";\r\n\r\n// Material UI components\r\n\r\nconst useStyles = makeStyles((theme) => ({\r\n  root: {\r\n    display: \"flex\",\r\n    alignItems: \"center\",\r\n    width: \"100%\",\r\n  },\r\n  input: {\r\n    marginLeft: theme.spacing(1),\r\n    flex: 1,\r\n    height: \"70px\",\r\n  },\r\n  iconButton: {\r\n    padding: 10,\r\n  },\r\n  dialog: {\r\n    width: \"500px\",\r\n  },\r\n  textField: {\r\n    marginTop: theme.spacing(2),\r\n  },\r\n  chip: {\r\n    marginTop: theme.spacing(1),\r\n    marginRight: theme.spacing(1),\r\n  },\r\n}));\r\n\r\n/**\r\n * Filter list of models in AI Viewer.\r\n */\r\nexport default function AIModelsFiltering({\r\n  loading,\r\n  modelFilterValue,\r\n  onFilterChange,\r\n}) {\r\n  const classes = useStyles();\r\n  const modelTypes = [\r\n    \"All\",\r\n    \"Classification\",\r\n    \"Segmentation\",\r\n    \"Object Detection\",\r\n    \"Instance Segmentation\",\r\n  ];\r\n  const trainingStatus = [\"All\", \"Pending\", \"Running\", \"Finished\", \"Failed\"];\r\n\r\n  const [structureFilter, setStructureFilter] = useState(\"\");\r\n  const [structureFilters, setStructureFilters] = useState([]); // TODO\r\n  const [modelTypeFilter, setModelTypeFilter] = useState(\"All\"); // TODO\r\n  const [trainingStatusFilter, setTrainingStatusFilter] = useState(\"All\"); // TODO\r\n  const [open, setOpen] = useState(false);\r\n\r\n  // const handleClickOpen = () => {\r\n  //   setOpen(true);\r\n  // };\r\n\r\n  const handleClose = () => {\r\n    setOpen(false);\r\n  };\r\n\r\n  const handleStructureInputChange = (event) => {\r\n    setStructureFilter(event.target.value);\r\n  };\r\n\r\n  const handleStructureInputKeyPress = (event) => {\r\n    if (event.key === \"Enter\") {\r\n      setStructureFilters((prevFilters) => [...prevFilters, structureFilter]);\r\n      setStructureFilter(\"\");\r\n      event.preventDefault();\r\n    }\r\n  };\r\n\r\n  const handleDeleteStructureFilter = (chipToDelete) => () => {\r\n    setStructureFilters((chips) =>\r\n      chips.filter((chip) => chip !== chipToDelete)\r\n    );\r\n  };\r\n\r\n  const resetFilters = () => {\r\n    setStructureFilter(\"\");\r\n    setStructureFilters([]);\r\n    setModelTypeFilter(\"All\");\r\n    setTrainingStatusFilter(\"All\");\r\n  };\r\n\r\n  return (\r\n    <Paper className={classes.root}>\r\n      {/* <IconButton\r\n        className={classes.iconButton}\r\n        aria-label=\"filter\"\r\n        onClick={handleClickOpen}\r\n        style={{\r\n          color:\r\n            structureFilters.length == 0 ||\r\n            modelTypeFilter !== \"All\" ||\r\n            trainingStatusFilter !== \"All\"\r\n              ? \"grey\"\r\n              : \"blue\",\r\n        }}\r\n      >\r\n        <FilterListIcon />\r\n      </IconButton> */}\r\n      <Dialog\r\n        open={open}\r\n        onClose={handleClose}\r\n        classes={{ paper: classes.dialog }}\r\n      >\r\n        <DialogTitle>Filter Models</DialogTitle>\r\n        <DialogContent>\r\n          <IconButton\r\n            className={classes.iconButton}\r\n            aria-label=\"reset\"\r\n            onClick={resetFilters}\r\n          >\r\n            <ResetIcon />\r\n          </IconButton>\r\n          <TextField\r\n            label=\"Structure\"\r\n            name=\"Textfield\"\r\n            value={structureFilter}\r\n            onChange={handleStructureInputChange}\r\n            onKeyPress={handleStructureInputKeyPress}\r\n            className={classes.textField}\r\n            fullWidth\r\n          />\r\n          {structureFilters.map((filter) => (\r\n            <Chip\r\n              key={filter}\r\n              label={filter}\r\n              onDelete={handleDeleteStructureFilter(filter)}\r\n              className={classes.chip}\r\n            />\r\n          ))}\r\n          <TextField\r\n            select\r\n            label=\"Model Type\"\r\n            value={modelTypeFilter}\r\n            onChange={(event) => setModelTypeFilter(event.target.value)}\r\n            className={classes.textField}\r\n            fullWidth\r\n            name=\"Textfield\"\r\n          >\r\n            {modelTypes.map((option) => (\r\n              <MenuItem key={option} value={option}>\r\n                {option}\r\n              </MenuItem>\r\n            ))}\r\n          </TextField>\r\n          <TextField\r\n            select\r\n            label=\"Training Status\"\r\n            value={trainingStatusFilter}\r\n            onChange={(event) => setTrainingStatusFilter(event.target.value)}\r\n            className={classes.textField}\r\n            fullWidth\r\n            name=\"Textfield\"\r\n          >\r\n            {trainingStatus.map((option) => (\r\n              <MenuItem key={option} value={option}>\r\n                {option}\r\n              </MenuItem>\r\n            ))}\r\n          </TextField>\r\n        </DialogContent>\r\n      </Dialog>\r\n      <InputBase\r\n        className={classes.input}\r\n        placeholder=\"Search Models\"\r\n        inputProps={{ \"aria-label\": \"search models\" }}\r\n        value={modelFilterValue}\r\n        onChange={onFilterChange}\r\n        disabled={loading}\r\n      />\r\n      <IconButton\r\n        className={classes.iconButton}\r\n        aria-label=\"search\"\r\n        disabled={loading}\r\n      >\r\n        <SearchIcon />\r\n      </IconButton>\r\n    </Paper>\r\n  );\r\n}\r\n\r\nAIModelsFiltering.propTypes = {\r\n  loading: PropTypes.bool,\r\n  modelFilterValue: PropTypes.string,\r\n  onFilterChange: PropTypes.func,\r\n};\r\n","// Copyright HS Analysis GmbH, 2023\r\n// Author: Lukas Buess\r\n\r\n// HSA imports\r\n\r\n// Keep in sync with:\r\n// Source\\HSA-KIT\\modules\\hsa\\core\\ai\\....py\r\n// Source\\HSA-KIT\\ClientApp\\src\\common\\components\\....jsx\r\n\r\n/**\r\n * All dataset specific parameters of an AI Training.\r\n * @param {Object} systemInformation The system information object.\r\n * @param {String} systemInformation.os Operating system. Default: \"No Information!\".\r\n * @param {String} systemInformation.cpu Name of CPU. Default: \"No Information!\".\r\n * @param {String} systemInformation.gpu Name of GPU. Default: \"No Information!\".\r\n * @param {String} systemInformation.ram Amount of RAM. Default: \"No Information!\".\r\n */\r\nexport class SystemInformation {\r\n  constructor(systemInformation) {\r\n    let os = \"No Information!\";\r\n    let cpu = \"No Information!\";\r\n    let gpu = \"No Information!\";\r\n    let ram = \"No Information!\";\r\n\r\n    if (systemInformation) {\r\n      os = systemInformation.os || os;\r\n      cpu = systemInformation.cpu || cpu;\r\n      gpu = systemInformation.gpu || gpu;\r\n      ram = systemInformation.ram || ram;\r\n    }\r\n\r\n    this.os = os;\r\n    this.cpu = cpu;\r\n    this.gpu = gpu;\r\n    this.ram = ram;\r\n  }\r\n}\r\n\r\n/**\r\n * Information of an AI Training.\r\n * @param {String} creationDate Date when training was started.\r\n * @param {String} completionDate Date when training was completed.\r\n * @param {SystemInformation} systemInformation Information about the system used for training.\r\n * @param {String} trainingStatus status of the AI Training.\r\n * @param {String} errorMessage Error message if training failed.\r\n */\r\nexport class AITrainingInformation {\r\n  constructor(\r\n    creationDate = \"\",\r\n    completionDate = \"\",\r\n    systemInformation = new SystemInformation(),\r\n    trainingStatus = \"pending\",\r\n    errorMessage = \"\"\r\n  ) {\r\n    // Input validation\r\n    if (typeof creationDate !== \"string\")\r\n      throw TypeError(\r\n        `creationDate must be of type string, received ${typeof creationDate}: ${creationDate}`\r\n      );\r\n    if (typeof completionDate !== \"string\")\r\n      throw TypeError(\r\n        `completionDate must be of type string, received ${typeof completionDate}: ${completionDate}`\r\n      );\r\n    if (!(systemInformation instanceof SystemInformation))\r\n      throw TypeError(\r\n        `systemInformation must be of type SystemInformation, received ${typeof systemInformation}: ${systemInformation}`\r\n      );\r\n    if (typeof trainingStatus !== \"string\")\r\n      throw TypeError(\r\n        `trainingStatus must be of type string, received ${typeof trainingStatus}: ${trainingStatus}`\r\n      );\r\n    if (typeof errorMessage !== \"string\")\r\n      throw TypeError(\r\n        `errorMessage must be of type string, received ${typeof errorMessage}: ${errorMessage}`\r\n      );\r\n\r\n    // Set parameters\r\n    this.creationDate = creationDate;\r\n    this.completionDate = completionDate;\r\n    this.systemInformation = systemInformation;\r\n    this.trainingStatus = trainingStatus;\r\n    this.errorMessage = errorMessage;\r\n  }\r\n}\r\n","// Copyright HS Analysis GmbH, 2023\r\n// Author: Lukas Buess\r\n\r\n// HSA imports\r\nimport AITrainingSettings from \"./AITrainingSettings.jsx\";\r\nimport { AITrainingInformation } from \"./AITrainingInformation.jsx\";\r\n\r\n/**\r\n * Information of an AI Training.\r\n * @param {AITrainingSettings} settings Settings used to train the AI model.\r\n * @param {AITrainingInformation} information Information about the AI training (e.g. progress, hardware, ...).\r\n */\r\nexport class AITrainingDataContainer {\r\n  constructor(\r\n    settings = new AITrainingSettings(),\r\n    information = new AITrainingInformation()\r\n  ) {\r\n    // Input validation\r\n    if (!(settings instanceof AITrainingSettings))\r\n      throw TypeError(\r\n        `settings must be of type AITrainingSettings, received ${typeof settings}: ${settings}`\r\n      );\r\n    if (!(information instanceof AITrainingInformation))\r\n      throw TypeError(\r\n        `information must be of type AITrainingInformation, received ${typeof information}: ${information}`\r\n      );\r\n\r\n    // Set parameters\r\n    this.settings = settings;\r\n    this.information = information;\r\n  }\r\n}\r\n","import Box from \"@mui/material/Box\";\r\nimport Card from \"@mui/material/Card\";\r\nimport CardContent from \"@mui/material/CardContent\";\r\nimport {\r\n  DatasetTypeNames,\r\n  LossFunctionNames,\r\n  MetricsNames,\r\n  OptimizerNames,\r\n} from \"../../../common/components/AITrainingSettings\";\r\nimport Divider from \"@mui/material/Divider\";\r\nimport { Grid } from \"@mui/material\";\r\nimport InfoOutlinedIcon from \"@mui/icons-material/InfoOutlined\";\r\nimport LinearProgress from \"@mui/material/LinearProgress\";\r\nimport { makeStyles } from \"@mui/styles\";\r\nimport MemoryIcon from \"@mui/icons-material/Memory\";\r\nimport PropTypes from \"prop-types\";\r\nimport React from \"react\";\r\nimport SettingsApplicationsIcon from \"@mui/icons-material/SettingsApplications\";\r\nimport TuneIcon from \"@mui/icons-material/Tune\";\r\nimport Typography from \"@mui/material/Typography\";\r\n\r\n// Styles\r\nconst useStyles = makeStyles((theme) => ({\r\n  card: {\r\n    width: \"100%\",\r\n    overflow: \"hidden\",\r\n    display: \"flex\",\r\n    flexDirection: \"column\",\r\n    boxShadow: \"0 8px 16px 0 rgba(0,0,0,0.2)\",\r\n    borderRadius: \"5px\",\r\n    backgroundColor: \"#f5f5f5\",\r\n    paddingTop: \"16px\",\r\n    paddingLeft: \"16px\",\r\n    paddingRight: \"16px\",\r\n    paddingBottom: \"0px\",\r\n  },\r\n  cardWrapper: {\r\n    marginRight: theme.spacing(1),\r\n    marginTop: theme.spacing(1),\r\n    marginLeft: theme.spacing(1),\r\n    marginBottom: theme.spacing(1),\r\n  },\r\n  divider: {\r\n    \"&.MuiDivider-root\": {\r\n      backgroundColor: \"rgb(66, 132, 243)\",\r\n      opacity: \"1\",\r\n    },\r\n  },\r\n  iconAdjust: {\r\n    position: \"relative\",\r\n    top: \"-2px\",\r\n  },\r\n  loading: {\r\n    position: \"relative\",\r\n    width: \"90%\",\r\n    top: \"80%\",\r\n    left: \"5%\",\r\n    bottom: \"20%\",\r\n    right: \"5%\",\r\n  },\r\n  loadingCard: {\r\n    height: \"calc(100vh - 160px)\",\r\n    width: \"100%\",\r\n    overflow: \"hidden\",\r\n    display: \"flex\",\r\n    flexDirection: \"column\",\r\n    boxShadow: \"0 8px 16px 0 rgba(0,0,0,0.2)\",\r\n    borderRadius: \"5px\",\r\n    backgroundColor: \"#f5f5f5\",\r\n    paddingTop: \"16px\",\r\n    paddingLeft: \"16px\",\r\n    paddingRight: \"16px\",\r\n    paddingBottom: \"14px\",\r\n  },\r\n  scrollable: {\r\n    height: \"calc(100vh - 140px)\",\r\n    width: \"100%\",\r\n    overflowY: \"auto\",\r\n  },\r\n}));\r\n\r\n/**\r\n * Place that hosts settings of selected model in AI Viewer.\r\n */\r\nexport default function SelectedAIModelInformation(props) {\r\n  const { loading, selectedAIModel } = props;\r\n  const classes = useStyles();\r\n  // const ExportTooltip = \"Export all data as .json\";\r\n  const check = \"...Looking for an update...\";\r\n  // const top = \"top\";\r\n\r\n  const makeTopRow = () => {\r\n    return (\r\n      <Box\r\n        sx={{\r\n          display: \"flex\",\r\n          justifyContent: \"space-between\",\r\n          alignItems: \"center\",\r\n          height: \"32px\",\r\n        }}\r\n      >\r\n        <Typography variant=\"h6\">\r\n          <InfoOutlinedIcon className={classes.iconAdjust} /> Model Information\r\n        </Typography>\r\n      </Box>\r\n    );\r\n  };\r\n\r\n  if (loading || selectedAIModel.settings.metaData === undefined) {\r\n    return (\r\n      <div className={classes.scrollable}>\r\n        <div className={classes.cardWrapper}>\r\n          <Card className={classes.loadingCard}>\r\n            {makeTopRow()}\r\n            <Divider className={classes.divider} />\r\n            <CardContent className={classes.cardContent}>\r\n              <br />\r\n              <div>\r\n                <b>\r\n                  ML Model: &quot;\r\n                  {selectedAIModel.settings.metaData.name.replace(\r\n                    \"Custom - \",\r\n                    \"\"\r\n                  )}\r\n                  &quot;{\" \"}\r\n                </b>\r\n                <br />\r\n                <br />\r\n                <b>{check}</b>\r\n                <br />\r\n                <br />\r\n                <br />\r\n                <br />\r\n                <LinearProgress className={classes.loading} />\r\n              </div>\r\n            </CardContent>\r\n          </Card>\r\n        </div>\r\n      </div>\r\n    );\r\n  }\r\n\r\n  if (!loading && selectedAIModel.settings.metaData !== undefined) {\r\n    return (\r\n      <div className={classes.scrollable}>\r\n        <div className={classes.cardWrapper}>\r\n          <Card className={classes.card}>\r\n            {makeTopRow()}\r\n            <Divider className={classes.divider} />\r\n            <CardContent className={classes.cardContent}>\r\n              <Grid container spacing={1}>\r\n                <Grid item xs={3}>\r\n                  ML Model\r\n                </Grid>\r\n                <Grid item xs={3}>\r\n                  &quot;\r\n                  {selectedAIModel.settings.metaData.name.replace(\r\n                    \"Custom - \",\r\n                    \"\"\r\n                  )}\r\n                  &quot;\r\n                </Grid>\r\n                <Grid item xs={3}>\r\n                  Project\r\n                </Grid>\r\n                <Grid item xs={3}>\r\n                  {selectedAIModel.settings.projectType}\r\n                </Grid>\r\n                <Grid item xs={3}>\r\n                  Version\r\n                </Grid>\r\n                <Grid item xs={3}>\r\n                  &quot;{selectedAIModel.settings.metaData.version}&quot;\r\n                </Grid>\r\n                <Grid item xs={3}>\r\n                  Structures\r\n                </Grid>\r\n                <Grid item xs={3}>\r\n                  {selectedAIModel.settings.structures\r\n                    .map((obj) => obj.label)\r\n                    .join(\", \")}\r\n                </Grid>\r\n                <Grid item xs={3}>\r\n                  Description\r\n                </Grid>\r\n                <Grid item xs={3}>\r\n                  &quot;{selectedAIModel.settings.metaData.description}&quot;\r\n                </Grid>\r\n                <Grid item xs={3}>\r\n                  Starting timestamp\r\n                </Grid>\r\n                <Grid item xs={3}>\r\n                  {new Date(selectedAIModel.information.creationDate)\r\n                    .toDateString()\r\n                    .replace(\" \", \", \")}\r\n                  ,{\" \"}\r\n                  {new Date(\r\n                    selectedAIModel.information.creationDate\r\n                  ).toLocaleTimeString()}\r\n                </Grid>\r\n                <Grid item xs={3}>\r\n                  New ML Model\r\n                </Grid>\r\n                <Grid item xs={3}>\r\n                  &quot;{String(selectedAIModel.settings.metaData.isNewModel)}\r\n                  &quot;\r\n                </Grid>\r\n                <Grid item xs={3}>\r\n                  Completion timestamp\r\n                </Grid>\r\n                <Grid item xs={3}>\r\n                  {selectedAIModel.information.completionDate === undefined ||\r\n                  selectedAIModel.information.completionDate === \"\"\r\n                    ? \"\"\r\n                    : `${new Date(selectedAIModel.information.completionDate)\r\n                        .toDateString()\r\n                        .replace(\" \", \", \")}, ${new Date(\r\n                        selectedAIModel.information.completionDate\r\n                      ).toLocaleTimeString()}`}\r\n                </Grid>\r\n                <Grid item xs={3}></Grid>\r\n                <Grid item xs={3}></Grid>\r\n              </Grid>\r\n            </CardContent>\r\n          </Card>\r\n\r\n          <Grid\r\n            container\r\n            spacing={3}\r\n            style={{\r\n              marginTop: \"6px\",\r\n            }}\r\n          >\r\n            <Grid item xs={6}>\r\n              <Card className={classes.card}>\r\n                <Typography variant=\"h6\">\r\n                  <SettingsApplicationsIcon className={classes.iconAdjust} />{\" \"}\r\n                  Model Parameters\r\n                </Typography>\r\n                <Divider className={classes.divider} />\r\n                <CardContent>\r\n                  <Grid container spacing={1}>\r\n                    <Grid item xs={6}>\r\n                      Dataset Type\r\n                    </Grid>\r\n                    <Grid item xs={6}>\r\n                      {\r\n                        DatasetTypeNames[\r\n                          selectedAIModel.settings.datasetParameters.datasetType\r\n                        ]\r\n                      }\r\n                    </Grid>\r\n                    <Grid item xs={6}>\r\n                      Input Channels\r\n                    </Grid>\r\n                    <Grid item xs={6}>\r\n                      {String(\r\n                        selectedAIModel.settings.modelParameters.inputChannels\r\n                      )}\r\n                    </Grid>\r\n                    <Grid item xs={6}>\r\n                      Spatial Dimensions\r\n                    </Grid>\r\n                    <Grid item xs={6}>\r\n                      {String(\r\n                        selectedAIModel.settings.modelParameters.spatialDims\r\n                      )}\r\n                    </Grid>\r\n                    <Grid item xs={6}>\r\n                      Image Width\r\n                    </Grid>\r\n                    <Grid item xs={6}>\r\n                      {String(\r\n                        selectedAIModel.settings.modelParameters.imageWidth\r\n                      )}\r\n                    </Grid>\r\n                    <Grid item xs={6}>\r\n                      Image Height\r\n                    </Grid>\r\n                    <Grid item xs={6}>\r\n                      {String(\r\n                        selectedAIModel.settings.modelParameters.imageHeight\r\n                      )}\r\n                    </Grid>\r\n                    <Grid item xs={6}>\r\n                      Number of Classes\r\n                    </Grid>\r\n                    <Grid item xs={6}>\r\n                      {String(\r\n                        selectedAIModel.settings.modelParameters.numberOfClasses\r\n                      )}\r\n                    </Grid>\r\n                    <Grid item xs={6}>\r\n                      Pyramid Level\r\n                    </Grid>\r\n                    <Grid item xs={6}>\r\n                      {String(\r\n                        selectedAIModel.settings.modelParameters.pyramidLevel\r\n                      )}\r\n                    </Grid>\r\n                  </Grid>\r\n                </CardContent>\r\n              </Card>\r\n            </Grid>\r\n\r\n            <Grid item xs={6}>\r\n              <Card className={classes.card}>\r\n                <Typography variant=\"h6\">\r\n                  <TuneIcon className={classes.iconAdjust} /> Training\r\n                  Parameters\r\n                </Typography>\r\n                <Divider className={classes.divider} />\r\n                <CardContent>\r\n                  <Grid container spacing={1}>\r\n                    <Grid item xs={6}>\r\n                      Epochs\r\n                    </Grid>\r\n                    <Grid item xs={6}>\r\n                      {selectedAIModel.settings.trainingParameters.epochs}\r\n                    </Grid>\r\n                    <Grid item xs={6}>\r\n                      Early Stopping\r\n                    </Grid>\r\n                    <Grid item xs={6}>\r\n                      {\r\n                        selectedAIModel.settings.trainingParameters\r\n                          .earlyStopping\r\n                      }\r\n                    </Grid>\r\n                    <Grid item xs={6}>\r\n                      Batch Size\r\n                    </Grid>\r\n                    <Grid item xs={6}>\r\n                      {selectedAIModel.settings.trainingParameters.batchSize}\r\n                    </Grid>\r\n                    <Grid item xs={6}>\r\n                      Metrics\r\n                    </Grid>\r\n                    <Grid item xs={6}>\r\n                      {selectedAIModel.settings.trainingParameters.metrics\r\n                        .map((metric) => MetricsNames[metric])\r\n                        .join(\", \")}\r\n                    </Grid>\r\n                    <Grid item xs={6}>\r\n                      Loss Functions\r\n                    </Grid>\r\n                    <Grid item xs={6}>\r\n                      {selectedAIModel.settings.trainingParameters.lossFunctions\r\n                        .map((lossFunction) => LossFunctionNames[lossFunction])\r\n                        .join(\", \")}\r\n                    </Grid>\r\n                    <Grid item xs={6}>\r\n                      Optimizers\r\n                    </Grid>\r\n                    <Grid item xs={6}>\r\n                      {\r\n                        OptimizerNames[\r\n                          selectedAIModel.settings.trainingParameters.optimizer\r\n                        ]\r\n                      }\r\n                      {OptimizerNames[\r\n                        selectedAIModel.settings.trainingParameters.optimizer\r\n                      ] === \"AdamW\"\r\n                        ? \"(eight)\"\r\n                        : \"\"}\r\n                    </Grid>\r\n                    <Grid item xs={6}>\r\n                      Learning Rate\r\n                    </Grid>\r\n                    <Grid item xs={6}>\r\n                      {String(\r\n                        selectedAIModel.settings.trainingParameters.learningRate\r\n                      )}\r\n                    </Grid>\r\n                  </Grid>\r\n                </CardContent>\r\n              </Card>\r\n            </Grid>\r\n          </Grid>\r\n\r\n          <Card\r\n            className={classes.card}\r\n            style={{\r\n              marginTop: \"34px\",\r\n            }}\r\n          >\r\n            <Typography variant=\"h6\">\r\n              <MemoryIcon className={classes.iconAdjust} /> System Information\r\n            </Typography>\r\n            <Divider className={classes.divider} />\r\n            <CardContent className={classes.cardContent}>\r\n              <Grid container spacing={1}>\r\n                <Grid item xs={6}>\r\n                  OS\r\n                </Grid>\r\n                <Grid item xs={6}>\r\n                  {selectedAIModel.information.systemInformation.os}\r\n                </Grid>\r\n                <Grid item xs={6}>\r\n                  CPU\r\n                </Grid>\r\n                <Grid item xs={6}>\r\n                  {selectedAIModel.information.systemInformation.cpu}\r\n                </Grid>\r\n                <Grid item xs={6}>\r\n                  GPU\r\n                </Grid>\r\n                <Grid item xs={6}>\r\n                  {selectedAIModel.information.systemInformation.gpu}\r\n                </Grid>\r\n                <Grid item xs={6}>\r\n                  RAM\r\n                </Grid>\r\n                <Grid item xs={6}>\r\n                  {String(selectedAIModel.information.systemInformation.ram)}\r\n                </Grid>\r\n              </Grid>\r\n            </CardContent>\r\n          </Card>\r\n        </div>\r\n      </div>\r\n    );\r\n  }\r\n  return <div></div>;\r\n}\r\n\r\nSelectedAIModelInformation.propTypes = {\r\n  loading: PropTypes.bool,\r\n  selectedAIModel: PropTypes.object,\r\n};\r\n","import * as echarts from \"echarts\";\r\nimport JSZip from \"jszip\";\r\nimport { saveAs } from \"file-saver\";\r\n\r\nexport const downloadZippedChartDataAndImage = async (chartId, key, data) => {\r\n  console.log(chartId);\r\n  console.log(key);\r\n  console.log(data);\r\n  const zip = new JSZip();\r\n\r\n  // Convert data to CSV format\r\n  const csvData = [`x-values,y-values`];\r\n  for (let i = 0; i < data.x_values.length; i++) {\r\n    csvData.push(`${data.x_values[i]},${data.y_values[i]}`);\r\n  }\r\n  const csvContent = csvData.join(\"\\n\");\r\n\r\n  // Add CSV to zip\r\n  zip.file(`${key}.csv`, csvContent);\r\n\r\n  // Add chart image to zip\r\n  const chartElement = document.getElementById(chartId);\r\n  const chartBase64 = echarts.getInstanceByDom(chartElement).getDataURL({\r\n    type: \"png\",\r\n    pixelRatio: 2,\r\n    backgroundColor: \"rgb(245, 245, 247)\",\r\n  });\r\n  const base64Data = chartBase64.replace(/^data:image\\/png;base64,/, \"\");\r\n  zip.file(`${key}.png`, base64Data, { base64: true });\r\n\r\n  // Generate zip and prompt download\r\n  zip.generateAsync({ type: \"blob\" }).then((content) => {\r\n    saveAs(content, `${key}_chart-data.zip`);\r\n  });\r\n};\r\n\r\nconst setColors = (label) => {\r\n  const redWords = [\"loss\", \"error\"];\r\n  const greyWords = [\"time\", \"memory\", \"epoch\", \"iter\"];\r\n  const redColors = [\"rgb(235, 100, 53)\", \"rgb(235, 100, 53, 0.4)\"];\r\n  const greyColors = [\"rgb(107, 107, 107)\", \"rgba(107, 107, 107, 0.4)\"];\r\n  const defaultBlue = [\"\", \"\"];\r\n\r\n  switch (true) {\r\n    case redWords.some((sub) => label.toLowerCase().includes(sub)):\r\n      return redColors;\r\n    case greyWords.some((sub) => label.toLowerCase().includes(sub)):\r\n      return greyColors;\r\n    default:\r\n      return defaultBlue;\r\n  }\r\n};\r\n\r\nexport const setOptions = (key, data) => {\r\n  const label = key;\r\n  const xValues = data.x_values;\r\n  const yValues = data.y_values;\r\n  const xAxisName = data.x_axis;\r\n  const yAxisName = data.y_axis;\r\n  const [solidColor, transparentColor] = setColors(label);\r\n\r\n  const options_output = {\r\n    title: {\r\n      text: label,\r\n      x: \"center\",\r\n    },\r\n    xAxis: {\r\n      type: \"category\",\r\n      data: xValues,\r\n      name: xAxisName,\r\n    },\r\n    yAxis: {\r\n      type: \"value\",\r\n      data: yValues,\r\n      name: yAxisName,\r\n    },\r\n    dataZoom: [\r\n      {\r\n        type: \"slider\",\r\n        start: 0,\r\n        end: 100,\r\n        fillerColor: transparentColor,\r\n        handleColor: solidColor,\r\n        handleStyle: {\r\n          color: transparentColor,\r\n        },\r\n      },\r\n    ],\r\n    tooltip: {\r\n      trigger: \"axis\",\r\n      axisPointer: {\r\n        type: \"cross\",\r\n      },\r\n    },\r\n    series: [\r\n      {\r\n        showSymbol: false,\r\n        type: \"line\",\r\n        data: yValues,\r\n        itemStyle: {\r\n          color: solidColor,\r\n        },\r\n      },\r\n    ],\r\n    animationDuration: 0,\r\n  };\r\n\r\n  return options_output;\r\n};\r\n\r\nexport const downloadNZip = (n, chartDataKeys, chartData) => {\r\n  for (let i = 0; i < n; i++) {\r\n    const key = chartDataKeys[i];\r\n    const data = chartData[key];\r\n    downloadZippedChartDataAndImage(`chart_${i + 1}`, key, data);\r\n  }\r\n};\r\n","import Box from \"@mui/material/Box\";\r\nimport Card from \"@mui/material/Card\";\r\nimport CardContent from \"@mui/material/CardContent\";\r\nimport Divider from \"@mui/material/Divider\";\r\nimport DownloadIcon from \"@mui/icons-material/Download\";\r\nimport { downloadZippedChartDataAndImage, setOptions } from \"./Utils\";\r\nimport * as echarts from \"echarts\";\r\nimport IconButton from \"@mui/material/IconButton\";\r\nimport { LinearProgress } from \"@mui/material\";\r\nimport { makeStyles } from \"@mui/styles\";\r\nimport PropTypes from \"prop-types\";\r\nimport React, { useEffect } from \"react\";\r\nimport Tooltip from \"@mui/material/Tooltip\";\r\nimport Typography from \"@mui/material/Typography\";\r\nimport BarChartIcon from \"@mui/icons-material/BarChart\";\r\n\r\n// Styles\r\nconst useStyles = makeStyles((theme) => ({\r\n  app: {\r\n    width: \"100%\",\r\n    height: \"280px\",\r\n    display: \"flex\",\r\n    alignItems: \"center\",\r\n  },\r\n  boxStyle: {\r\n    display: \"flex\",\r\n    justifyContent: \"space-between\",\r\n    alignItems: \"center\",\r\n    height: \"32px\",\r\n  },\r\n  card: {\r\n    height: \"calc(100vh - 160px)\",\r\n    width: \"100%\",\r\n    overflow: \"hidden\",\r\n    display: \"flex\",\r\n    flexDirection: \"column\",\r\n    boxShadow: \"0 8px 16px 0 rgba(0,0,0,0.2)\",\r\n    borderRadius: \"5px\",\r\n    backgroundColor: \"#f5f5f5\",\r\n    paddingTop: \"16px\",\r\n    paddingLeft: \"16px\",\r\n    paddingRight: \"16px\",\r\n    paddingBottom: \"14px\",\r\n  },\r\n  cardContent: {\r\n    overflowY: \"auto\",\r\n  },\r\n  cardWrapper: {\r\n    marginRight: theme.spacing(1),\r\n    marginTop: theme.spacing(1),\r\n    marginLeft: theme.spacing(1),\r\n    marginBottom: theme.spacing(1),\r\n  },\r\n  chartButtons: {\r\n    display: \"flex\",\r\n    flexDirection: \"column\",\r\n    gap: \"10px\",\r\n  },\r\n  chartDimension: {\r\n    width: \"32vw\",\r\n    maxWidth: \"1000px\",\r\n    height: \"250px\",\r\n  },\r\n  divider: {\r\n    \"&.MuiDivider-root\": {\r\n      backgroundColor: \"rgb(66, 132, 243)\",\r\n      opacity: \"1\",\r\n    },\r\n  },\r\n  iconAdjust: {\r\n    position: \"relative\",\r\n    top: \"-2px\",\r\n  },\r\n  loading: {\r\n    position: \"relative\",\r\n    width: \"90%\",\r\n    top: \"80%\",\r\n    left: \"5%\",\r\n    bottom: \"20%\",\r\n    right: \"5%\",\r\n  },\r\n  scrollable: {\r\n    height: \"calc(100vh - 110px)\",\r\n    width: \"100%\",\r\n    overflowY: \"auto\",\r\n  },\r\n}));\r\n\r\nexport default function ApacheEChartsTimeSeries(props) {\r\n  const { chartData, chartDataKeys, error, loading, m, n, selectedModel } =\r\n    props;\r\n  const classes = useStyles();\r\n  const top = \"top\";\r\n\r\n  useEffect(() => {\r\n    if (!loading && n > 0) {\r\n      const charts = [];\r\n\r\n      for (let i = 0; i < n; i++) {\r\n        const element = document.getElementById(`chart_${i + 1}`);\r\n        charts.push(echarts.init(element));\r\n      }\r\n\r\n      for (let i = 0; i < n; i++) {\r\n        const key = chartDataKeys[i];\r\n        const data = chartData[key];\r\n        charts[i].setOption(setOptions(key, data));\r\n      }\r\n\r\n      return () => {\r\n        for (let i = 0; i < n; i++) {\r\n          charts[i].dispose();\r\n        }\r\n      };\r\n    }\r\n  }, [loading, chartData]);\r\n\r\n  const makeTopRow = () => {\r\n    return (\r\n      <Box className={classes.boxStyle}>\r\n        <Typography variant=\"h6\">\r\n          <BarChartIcon className={classes.iconAdjust} /> Training Statistics\r\n        </Typography>\r\n      </Box>\r\n    );\r\n  };\r\n\r\n  const setChartAndDownloadButton = (i) => {\r\n    const key = chartDataKeys[i];\r\n    const data = chartData[key];\r\n    const chartId = `chart_${i + 1}`;\r\n    const exportTooltip = \"Export data and image as .zip\";\r\n    if (key && data) {\r\n      return (\r\n        <>\r\n          <div\r\n            id={chartId}\r\n            className={classes.chartDimension}\r\n            key={`chart_${i}`}\r\n          ></div>\r\n          <div className={classes.chartButtons}>\r\n            <Tooltip title={exportTooltip} placement={top} disableInteractive>\r\n              <IconButton\r\n                onClick={() =>\r\n                  downloadZippedChartDataAndImage(chartId, key, data)\r\n                }\r\n              >\r\n                <DownloadIcon />\r\n              </IconButton>\r\n            </Tooltip>\r\n          </div>\r\n        </>\r\n      );\r\n    }\r\n\r\n    return (\r\n      <div\r\n        id={chartId}\r\n        className={classes.chartDimension}\r\n        key={`chart_${i}`}\r\n      ></div>\r\n    );\r\n  };\r\n\r\n  if (error) {\r\n    return <div>An error occurred: {error.message}</div>;\r\n  }\r\n\r\n  if (loading) {\r\n    const check = \"...Preparing Graphs...\";\r\n    return (\r\n      <div className={classes.scrollable}>\r\n        <div className={classes.cardWrapper}>\r\n          <Card className={classes.card}>\r\n            {makeTopRow()}\r\n            <Divider className={classes.divider} />\r\n            <CardContent className={classes.cardContent}>\r\n              <br />\r\n              <div>\r\n                <b>\r\n                  ML Model: &quot;{selectedModel.replace(\"Custom - \", \"\")}&quot;{\" \"}\r\n                </b>\r\n                <br />\r\n                <br />\r\n                <b>{check}</b>\r\n                <br />\r\n                <br />\r\n                <br />\r\n                <br />\r\n                <LinearProgress className={classes.loading} />\r\n              </div>\r\n            </CardContent>\r\n          </Card>\r\n        </div>\r\n      </div>\r\n    );\r\n  }\r\n\r\n  if (!loading && n == 0) {\r\n    const noData =\r\n      'There are no chart data associated with ML model \"' +\r\n      selectedModel.replace(\"Custom - \", \"\") +\r\n      '\".';\r\n    return (\r\n      <div className={classes.scrollable}>\r\n        <div className={classes.cardWrapper}>\r\n          <Card className={classes.card}>\r\n            {makeTopRow()}\r\n            <Divider className={classes.divider} />\r\n            <CardContent className={classes.cardContent}>\r\n              <br />\r\n              <div>\r\n                <b>{noData}</b>\r\n                <br />\r\n              </div>\r\n            </CardContent>\r\n          </Card>\r\n        </div>\r\n      </div>\r\n    );\r\n  }\r\n\r\n  if (!loading && n > 0) {\r\n    return (\r\n      <div className={classes.scrollable}>\r\n        <div className={classes.cardWrapper}>\r\n          <Card className={classes.card}>\r\n            {makeTopRow()}\r\n            <Divider className={classes.divider} />\r\n            <CardContent className={classes.cardContent}>\r\n              {Array.from({ length: Math.ceil(m / 2) }, (_, i) => (\r\n                <div key={`row_${i}`} className={classes.app}>\r\n                  {setChartAndDownloadButton(2 * i)}\r\n                  {setChartAndDownloadButton(2 * i + 1)}\r\n                </div>\r\n              ))}\r\n            </CardContent>\r\n          </Card>\r\n        </div>\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nApacheEChartsTimeSeries.propTypes = {\r\n  chartData: PropTypes.object,\r\n  chartDataKeys: PropTypes.array,\r\n  error: PropTypes.object,\r\n  loading: PropTypes.bool,\r\n  m: PropTypes.number,\r\n  n: PropTypes.number,\r\n  selectedModel: PropTypes.string,\r\n};\r\n","import Backend from \"../../../common/utils/Backend\";\r\n\r\nexport const handleDownload = (finalSelectedModel) => {\r\n  Backend.getModelMetadata(\"hsa_models\", false, (res) => {\r\n    const fetchedData = res.models;\r\n    const model = fetchedData.find(\r\n      (item) => item.meta_data.name === finalSelectedModel\r\n    );\r\n    const jsonStr = JSON.stringify(model, null, 2); // stringify with pretty-print\r\n    const blob = new Blob([jsonStr], { type: \"text/json\" });\r\n    const blobURL = window.URL.createObjectURL(blob);\r\n\r\n    const tempLink = document.createElement(\"a\");\r\n    tempLink.style.display = \"none\";\r\n    tempLink.href = blobURL;\r\n    tempLink.setAttribute(\"download\", finalSelectedModel + \".json\");\r\n\r\n    document.body.appendChild(tempLink);\r\n    tempLink.click();\r\n\r\n    // Clean-up\r\n    document.body.removeChild(tempLink);\r\n    window.URL.revokeObjectURL(blobURL);\r\n  });\r\n};\r\n","import React, { useState, useEffect } from \"react\";\r\nimport BarChartIcon from \"@mui/icons-material/BarChart\";\r\nimport Backend from \"../common/utils/Backend\";\r\nimport InfoOutlinedIcon from \"@mui/icons-material/InfoOutlined\";\r\nimport SettingsIcon from \"@mui/icons-material/Settings\";\r\n\r\nimport { Grid } from \"@mui/material\";\r\n\r\nimport AIModelsList from \"./components/AIModelsList\";\r\nimport AIModelsFiltering from \"./components/AIModelsFiltering\";\r\nimport AITrainingSettings, {\r\n  TrainingParameters,\r\n  ModelMetaData,\r\n  DatasetParameters,\r\n  ImageDatasetMeta,\r\n} from \"../common/components/AITrainingSettings\";\r\nimport {\r\n  AITrainingInformation,\r\n  SystemInformation,\r\n} from \"../common/components/AITrainingInformation\";\r\nimport { AITrainingDataContainer } from \"../common/components/AITrainingDataContainer\";\r\nimport { Tab, Tabs, Typography } from \"@mui/material\";\r\nimport IconButton from \"@mui/material/IconButton\";\r\nimport { CloudDownload, SimCardDownload } from \"@mui/icons-material\";\r\nimport CloudUploadIcon from \"@mui/icons-material/CloudUpload\";\r\nimport DeleteIcon from \"@mui/icons-material/Delete\";\r\n\r\nimport ReplayIcon from \"@mui/icons-material/Replay\";\r\nimport { makeStyles } from \"@mui/styles\";\r\nimport SelectedAIModelInformation from \"./components/dashboard-representation/SelectedAIModelInformation\";\r\nimport ApacheEChartsTimeSeries from \"./components/custom-tensorboard-representation/ApacheEChartsTimeSeries\";\r\nimport Box from \"@mui/material/Box\";\r\nimport Card from \"@mui/material/Card\";\r\nimport LinearProgress from \"@mui/material/LinearProgress\";\r\nimport { handleDownload } from \"./components/dashboard-representation/Utils\";\r\nimport { downloadNZip } from \"./components/custom-tensorboard-representation/Utils\";\r\nimport Tooltip from \"@mui/material/Tooltip\";\r\nimport Structure from \"../common/components/Structure\";\r\n\r\nconst useStyles = makeStyles(() => ({\r\n  blueButton: {\r\n    border: \"none\",\r\n    textAlign: \"center\",\r\n    verticalAlign: \"middle\",\r\n    textDecoration: \"none\",\r\n    display: \"inline-block\",\r\n    fontSize: \"14px\",\r\n    transitionDuration: \"0s\",\r\n    color: \"rgb(6, 115, 193)\",\r\n  },\r\n  divider: {\r\n    \"&.MuiDivider-root\": {\r\n      backgroundColor: \"rgb(66, 132, 243)\",\r\n      opacity: \"1\",\r\n    },\r\n  },\r\n  greyButton: {\r\n    border: \"none\",\r\n    textAlign: \"center\",\r\n    verticalAlign: \"middle\",\r\n    textDecoration: \"none\",\r\n    display: \"inline-block\",\r\n    fontSize: \"14px\",\r\n    transitionDuration: \"0s\",\r\n  },\r\n  iconAdjust: {\r\n    position: \"relative\",\r\n    top: \"-2px\",\r\n  },\r\n}));\r\n\r\nconst addOneIfOdd = (nKeys) => {\r\n  return nKeys % 2 == 0 ? nKeys : nKeys + 1;\r\n};\r\n\r\n/**\r\n * Overall parent component for AI Viewer.\r\n * This component contains all parts of the ai viewer and will be called with the /ai_view route.\r\n */\r\nexport default function AIViewer() {\r\n  const [selectedModel, setSelectedModel] = useState(\"\");\r\n  const [trainedModels, setTrainedModels] = useState([]);\r\n  const [loadingOne, setLoadingOne] = useState(true);\r\n  const [importingAIModel, setImportingAIModel] = useState(false);\r\n  const [exportingAIModel, setExportingAIModel] = useState(false);\r\n  const [exportingAIModelDataset, setExportingAIModelDataset] = useState(false);\r\n  const [deletingAIModel, setDeletingAIModel] = useState(false);\r\n  const [modelFilterValue, setModelFilterValue] = useState(\"\");\r\n  const [selectedTab, setSelectedTab] = useState(0);\r\n\r\n  const [chartDataKeys, setChartDataKeys] = useState([]);\r\n  const [error, setError] = useState(null);\r\n  const [m, setM] = useState(0);\r\n  const [n, setN] = useState(0);\r\n  const [chartData, setChartData] = useState({});\r\n  const classes = useStyles();\r\n\r\n  useEffect(() => {\r\n    fetchData(true);\r\n    return () => {};\r\n  }, []);\r\n\r\n  const fetchData = async (showLoading = false) => {\r\n    if (showLoading) setLoadingOne(true);\r\n    try {\r\n      if (selectedTab === 0) {\r\n        Backend.getModelMetadata(\"hsa_models\", false, (res) => {\r\n          setTrainedModels(res.newModels);\r\n        });\r\n      }\r\n\r\n      if (selectedTab === 1) {\r\n        Backend.loadTensorboardScalarData(selectedModel, (res) => {\r\n          setChartData(res);\r\n          const resKeys = Object.keys(res);\r\n          const resKeysLength = resKeys.length;\r\n          setChartDataKeys(resKeys);\r\n          setM(addOneIfOdd(resKeysLength));\r\n          setN(resKeysLength);\r\n        });\r\n      }\r\n    } catch (error) {\r\n      console.log(error);\r\n      setError(error);\r\n    } finally {\r\n      console.log(\"Data fetched successfully!\");\r\n      setTimeout(() => setLoadingOne(false), 625);\r\n    }\r\n  };\r\n\r\n  useEffect(() => {\r\n    if (selectedTab === 1) {\r\n      fetchData(true);\r\n      setLoadingOne(true);\r\n      setTimeout(() => setLoadingOne(false), 625);\r\n    }\r\n\r\n    return () => {};\r\n  }, [selectedModel, selectedTab]);\r\n\r\n  const AIModels = [];\r\n\r\n  const nTrainedModels = trainedModels.length;\r\n  if (nTrainedModels > 0) {\r\n    for (let i = 0; i < nTrainedModels; i++) {\r\n      const model = trainedModels[i];\r\n\r\n      // get AITrainingSettings\r\n      const metaData = new ModelMetaData({\r\n        name: model.settings.meta_data.name,\r\n        version: model.settings.meta_data.version,\r\n        description: model.settings.meta_data.description,\r\n        isNewModel: model.settings.meta_data.is_new_model,\r\n      });\r\n      const datasetParameters = new DatasetParameters({\r\n        datasetApproach: model.settings.dataset_parameters.dataset_approach,\r\n        datasetType: model.settings.dataset_parameters.dataset_type,\r\n        datasetOnly: model.settings.dataset_parameters.dataset_only,\r\n        useExistingDataset:\r\n          model.settings.dataset_parameters.use_existing_dataset,\r\n      });\r\n      const trainingParameters = new TrainingParameters({\r\n        epochs: model.settings.training_parameters.epochs,\r\n        earlyStopping: model.settings.training_parameters.early_stopping,\r\n        batchSize: model.settings.training_parameters.batch_size,\r\n        metrics: model.settings.training_parameters.metrics,\r\n        lossFunctions: model.settings.training_parameters.loss_function,\r\n        optimizer: model.settings.training_parameters.optimizer,\r\n        learningRate: model.settings.training_parameters.learning_rate,\r\n      });\r\n      const modelParameters = new ImageDatasetMeta({\r\n        datasetType: model.settings.model_parameters.dataset_type,\r\n        inputChannels: model.settings.model_parameters.input_channels,\r\n        spatialDims: model.settings.model_parameters.spatial_dims,\r\n        imageWidth: model.settings.model_parameters.image_width,\r\n        imageHeight: model.settings.model_parameters.image_height,\r\n        numberOfClasses: model.settings.model_parameters.number_of_classes,\r\n        pyramidLevel: model.settings.model_parameters.pyramid_level,\r\n      });\r\n\r\n      const trainingsettings = new AITrainingSettings(\r\n        model.settings.project_id,\r\n        model.settings.project_type ? model.settings.project_type : \"\",\r\n        metaData,\r\n        datasetParameters,\r\n        trainingParameters,\r\n        modelParameters,\r\n        model.settings.structures.map((structure) =>\r\n          Structure.fromObject(structure)\r\n        )\r\n      );\r\n\r\n      // get AITrainingInformation\r\n      const systemInformation = new SystemInformation(\r\n        model.information.system_information\r\n      );\r\n\r\n      const trainingInformation = new AITrainingInformation(\r\n        model.information.creation_date,\r\n        model.information.completion_date,\r\n        systemInformation,\r\n        model.information.training_status,\r\n        model.information.error_message\r\n      );\r\n\r\n      // initialize AIModelDataContainer\r\n      const AIModelDataContainer = new AITrainingDataContainer(\r\n        trainingsettings,\r\n        trainingInformation\r\n      );\r\n\r\n      AIModels.push(AIModelDataContainer);\r\n    }\r\n\r\n    AIModels.sort((a, b) => {\r\n      return (\r\n        Date.parse(b.information.creationDate) -\r\n        Date.parse(a.information.creationDate)\r\n      );\r\n    });\r\n  }\r\n\r\n  const getFilteredAIModels = (filterInput, AIModels) => {\r\n    return AIModels.filter((model) => {\r\n      return model.settings.metaData.name\r\n        .toLowerCase()\r\n        .includes(filterInput.toLowerCase());\r\n    });\r\n  };\r\n\r\n  const filteredModels = getFilteredAIModels(modelFilterValue, AIModels);\r\n\r\n  const handleFilterChange = (event) => {\r\n    setModelFilterValue(event.target.value);\r\n  };\r\n\r\n  const updateSelectedModel = () => {\r\n    if (filteredModels.length === 0) {\r\n      setSelectedModel(\"\");\r\n      return \"\";\r\n    }\r\n\r\n    setSelectedModel(filteredModels[0].settings.metaData.name);\r\n    return filteredModels[0].settings.metaData.name;\r\n  };\r\n\r\n  const handleImportModelSelection = (e) => {\r\n    let files = e.target.files;\r\n    setImportingAIModel(true);\r\n    Backend.importAIModels(files[0], (result) => {\r\n      if (!result.success) {\r\n        window.showErrorSnackbar(\"Import failed\");\r\n      } else if (result.fileIsNew) {\r\n        window.showSuccessSnackbar(\"Successfully imported model\");\r\n      } else {\r\n        window.showWarningSnackbar(\"Model already exists\");\r\n      }\r\n      setImportingAIModel(false);\r\n      fetchData(true);\r\n    });\r\n  };\r\n\r\n  const handleExportModel = () => {\r\n    setExportingAIModel(true);\r\n    var aiModel = {\r\n      Name: selectedModel,\r\n    };\r\n    Backend.exportAIModel(JSON.stringify(aiModel), (result) => {\r\n      console.log(\"Exported model\", result);\r\n      setExportingAIModel(false);\r\n    });\r\n  };\r\n\r\n  const handleExportModelDataset = () => {\r\n    setExportingAIModelDataset(true);\r\n    var aiModel = {\r\n      Name: selectedModel,\r\n    };\r\n    Backend.exportAIModelDataset(JSON.stringify(aiModel), (result) => {\r\n      console.log(\"Exported model dataset\", result);\r\n      setExportingAIModelDataset(false);\r\n    });\r\n  };\r\n\r\n  const handleDeleteModel = () => {\r\n    window.openResponseDialog(\r\n      \"Do you really want to delete this model?\",\r\n      (response) => {\r\n        if (response) {\r\n          setDeletingAIModel(true);\r\n          Backend.deleteAIModel(selectedModel, (result) => {\r\n            if (result.successful) {\r\n              window.showSuccessSnackbar(result.information);\r\n            } else {\r\n              window.showErrorSnackbar(result.information);\r\n            }\r\n            setDeletingAIModel(false);\r\n            fetchData(true);\r\n          });\r\n        }\r\n      }\r\n    );\r\n  };\r\n\r\n  const styleTwo = { height: \"calc(100vh - 140px)\", background: \"#FFFFFF\" };\r\n  if (AIModels.length == 0) {\r\n    return (\r\n      <>\r\n        <Box\r\n          display=\"flex\"\r\n          flexDirection=\"column\"\r\n          alignItems=\"center\"\r\n          justifyContent=\"center\"\r\n          height=\"calc(100vh - 140px)\"\r\n        >\r\n          <Typography variant=\"h6\">No AI models available</Typography>\r\n          <Box display=\"flex\" alignItems=\"center\">\r\n            <Tooltip\r\n              title={\"Import Model\"}\r\n              placement=\"bottom\"\r\n              disableInteractive\r\n            >\r\n              <IconButton\r\n                color=\"primary\"\r\n                aria-label=\"import\"\r\n                onClick={() => document.getElementById(\"importAIModel\").click()}\r\n                disabled={loadingOne}\r\n              >\r\n                <CloudUploadIcon />\r\n              </IconButton>\r\n            </Tooltip>\r\n          </Box>\r\n          <input\r\n            type=\"file\"\r\n            id=\"importAIModel\"\r\n            style={{\r\n              position: \"absolute\",\r\n              top: \"-150px\",\r\n            }}\r\n            accept=\".modelhsa\"\r\n            onChange={handleImportModelSelection}\r\n            disabled={\r\n              importingAIModel ||\r\n              exportingAIModel ||\r\n              exportingAIModelDataset ||\r\n              deletingAIModel\r\n            }\r\n          />\r\n        </Box>\r\n      </>\r\n    );\r\n  }\r\n\r\n  const handleChange = (event, newValue) => {\r\n    setSelectedTab(newValue);\r\n  };\r\n\r\n  const setChartBlocks = (selectedTab, finalSelectedModel) => {\r\n    const styleOne = { height: \"100%\", background: \"rgb(235,235,235)\" };\r\n    switch (selectedTab) {\r\n      case 0:\r\n        return (\r\n          <div style={styleOne}>\r\n            <Box>\r\n              <SelectedAIModelInformation\r\n                loading={loadingOne}\r\n                selectedAIModel={AIModels.find(\r\n                  (item) => item.settings.metaData.name === finalSelectedModel\r\n                )}\r\n              ></SelectedAIModelInformation>\r\n            </Box>\r\n          </div>\r\n        );\r\n      case 1:\r\n        return (\r\n          <div style={styleOne}>\r\n            <Box>\r\n              <ApacheEChartsTimeSeries\r\n                chartData={chartData}\r\n                chartDataKeys={chartDataKeys}\r\n                error={error}\r\n                loading={loadingOne}\r\n                selectedModel={finalSelectedModel}\r\n                m={m}\r\n                n={n}\r\n              />\r\n            </Box>\r\n          </div>\r\n        );\r\n      default:\r\n        return <></>;\r\n    }\r\n  };\r\n\r\n  if (AIModels.length > 0) {\r\n    const finalSelectedModel = filteredModels.some(\r\n      (model) => model.settings.metaData.name === selectedModel\r\n    )\r\n      ? selectedModel\r\n      : updateSelectedModel();\r\n    const chartBlocks = setChartBlocks(selectedTab, finalSelectedModel);\r\n\r\n    return (\r\n      <>\r\n        <Grid container spacing={0} style={{ flex: 1 }}>\r\n          <Grid\r\n            container\r\n            direction=\"column\"\r\n            item\r\n            xs={9}\r\n            style={{\r\n              height: \"100%\",\r\n            }}\r\n          >\r\n            <Grid\r\n              style={{\r\n                height: \"76px\",\r\n                backgroundColor: \"white\",\r\n                display: \"flex\",\r\n                alignItems: \"center\",\r\n                justifyContent: \"space-between\",\r\n                paddingLeft: \"8px\",\r\n                paddingRight: \"8px\",\r\n                borderBottom: \"1px solid rgb(235,235,235)\",\r\n              }}\r\n            >\r\n              <Card\r\n                style={{\r\n                  width: \"240px\",\r\n                  color: \"#0673C1\",\r\n                  userSelect: \"none\",\r\n                }}\r\n              >\r\n                {loadingOne && <span>Loading...</span>}\r\n                {!loadingOne && (\r\n                  <span>\r\n                    &quot;{selectedModel.replace(\"Custom - \", \"\")}\r\n                    &quot;\r\n                  </span>\r\n                )}\r\n              </Card>\r\n              <Tabs\r\n                style={{ width: \"50%\", alignSelf: \"flex-end\" }}\r\n                value={selectedTab}\r\n                onChange={handleChange}\r\n                variant=\"fullWidth\"\r\n                indicatorColor=\"primary\"\r\n                textColor=\"primary\"\r\n                centered\r\n              >\r\n                <Tab\r\n                  icon={<InfoOutlinedIcon />}\r\n                  iconPosition=\"start\"\r\n                  label=\"Model Information\"\r\n                  disabled={\r\n                    loadingOne ||\r\n                    importingAIModel ||\r\n                    exportingAIModel ||\r\n                    exportingAIModelDataset ||\r\n                    deletingAIModel\r\n                  }\r\n                />\r\n                <Tab\r\n                  icon={<BarChartIcon />}\r\n                  iconPosition=\"start\"\r\n                  label=\"Training Statistics\"\r\n                  disabled={\r\n                    loadingOne ||\r\n                    importingAIModel ||\r\n                    exportingAIModel ||\r\n                    exportingAIModelDataset ||\r\n                    deletingAIModel\r\n                  }\r\n                />\r\n                <Tab\r\n                  icon={<SettingsIcon />}\r\n                  iconPosition=\"start\"\r\n                  label=\"Model Settings (coming soon)\"\r\n                  disabled\r\n                />\r\n              </Tabs>\r\n              <span\r\n                style={{\r\n                  width: \"240px\",\r\n                }}\r\n              ></span>\r\n            </Grid>\r\n            <Grid item>{chartBlocks}</Grid>\r\n          </Grid>\r\n\r\n          {/* Main Part*/}\r\n          <Grid item xs={3} style={styleTwo}>\r\n            <Grid\r\n              style={{\r\n                height: \"76px\",\r\n                backgroundColor: \"white\",\r\n                display: \"flex\",\r\n                alignItems: \"center\",\r\n                justifyContent: \"space-between\",\r\n                borderBottom: \"1px solid rgb(235,235,235)\",\r\n              }}\r\n            >\r\n              <div style={{ display: \"flex\", flexDirection: \"row\" }}>\r\n                <div\r\n                  style={{\r\n                    width: \"48px\",\r\n                    height: \"76px\",\r\n                    backgroundColor: \"white\",\r\n                    borderRight: \"8px solid rgb(235,235,235)\",\r\n                    display: \"flex\",\r\n                    justifyContent: \"center\",\r\n                    alignItems: \"center\",\r\n                  }}\r\n                >\r\n                  <Tooltip\r\n                    title={\"Refresh\"}\r\n                    placement=\"left\"\r\n                    disableInteractive\r\n                  >\r\n                    <span>\r\n                      <IconButton\r\n                        color=\"primary\"\r\n                        className={classes.iconButton}\r\n                        onClick={() => {\r\n                          fetchData(true);\r\n                        }}\r\n                        disabled={loadingOne}\r\n                      >\r\n                        <ReplayIcon />\r\n                      </IconButton>\r\n                    </span>\r\n                  </Tooltip>\r\n                </div>\r\n                <div\r\n                  style={{\r\n                    flex: 1,\r\n                    height: \"76px\",\r\n                    width: \"calc(25vw - 48px)\",\r\n                    backgroundColor: \"white\",\r\n                    display: \"flex\",\r\n                    alignItems: \"center\",\r\n                    justifyContent: \"space-between\",\r\n                  }}\r\n                >\r\n                  <input\r\n                    type=\"file\"\r\n                    id=\"importAIModel\"\r\n                    style={{\r\n                      position: \"absolute\",\r\n                      top: \"-150px\",\r\n                    }}\r\n                    accept=\".modelhsa\"\r\n                    onChange={handleImportModelSelection}\r\n                    disabled={\r\n                      importingAIModel ||\r\n                      exportingAIModel ||\r\n                      exportingAIModelDataset ||\r\n                      deletingAIModel\r\n                    }\r\n                  />\r\n                  <AIModelsFiltering\r\n                    loading={\r\n                      importingAIModel ||\r\n                      exportingAIModel ||\r\n                      exportingAIModelDataset ||\r\n                      deletingAIModel\r\n                    }\r\n                    modelFilterValue={modelFilterValue}\r\n                    onFilterChange={handleFilterChange}\r\n                  ></AIModelsFiltering>\r\n                </div>\r\n              </div>\r\n            </Grid>\r\n            <div style={{ display: \"flex\", flexDirection: \"row\" }}>\r\n              <div\r\n                style={{\r\n                  display: \"flex\",\r\n                  flexDirection: \"column\",\r\n                  width: \"48px\",\r\n                  backgroundColor: \"white\",\r\n                  borderRight: \"8px solid rgb(235,235,235)\",\r\n                  textAlign: \"center\",\r\n                }}\r\n              >\r\n                <div\r\n                  style={{\r\n                    width: \"48px\",\r\n                    backgroundColor: \"white\",\r\n                    borderRight: \"8px solid rgb(235,235,235)\",\r\n                    borderBottom: \"1px solid rgb(235,235,235)\",\r\n                    textAlign: \"center\",\r\n                  }}\r\n                >\r\n                  <Tooltip\r\n                    title={\"Export Model Information as .json\"}\r\n                    placement=\"left\"\r\n                    disableInteractive\r\n                  >\r\n                    <span>\r\n                      <IconButton\r\n                        className={classes.iconButton}\r\n                        onClick={() => handleDownload(finalSelectedModel)}\r\n                        disabled={loadingOne}\r\n                      >\r\n                        <InfoOutlinedIcon />\r\n                      </IconButton>\r\n                    </span>\r\n                  </Tooltip>\r\n                  <Tooltip\r\n                    title={\r\n                      \"Export all Training Statistics data and images as .zip\"\r\n                    }\r\n                    placement=\"left\"\r\n                    disableInteractive\r\n                  >\r\n                    <span>\r\n                      <IconButton\r\n                        className={classes.iconButton}\r\n                        onClick={() =>\r\n                          downloadNZip(n, chartDataKeys, chartData)\r\n                        }\r\n                        disabled={loadingOne}\r\n                      >\r\n                        <BarChartIcon />\r\n                      </IconButton>\r\n                    </span>\r\n                  </Tooltip>\r\n                  <Tooltip\r\n                    title={\"Export Model Information as .json\"}\r\n                    placement=\"left\"\r\n                    disableInteractive\r\n                  >\r\n                    <span>\r\n                      <IconButton\r\n                        className={classes.iconButton}\r\n                        onClick={() => handleDownload(finalSelectedModel)}\r\n                        disabled={true}\r\n                      >\r\n                        <SettingsIcon />\r\n                      </IconButton>\r\n                    </span>\r\n                  </Tooltip>\r\n                </div>\r\n                <div\r\n                  style={{\r\n                    width: \"48px\",\r\n                    backgroundColor: \"white\",\r\n                    borderRight: \"8px solid rgb(235,235,235)\",\r\n                    borderBottom: \"1px solid rgb(235,235,235)\",\r\n                    textAlign: \"center\",\r\n                  }}\r\n                >\r\n                  <Tooltip\r\n                    title={\"Import Model\"}\r\n                    placement=\"left\"\r\n                    disableInteractive\r\n                  >\r\n                    <span>\r\n                      <IconButton\r\n                        color=\"primary\"\r\n                        className={classes.iconButton}\r\n                        aria-label=\"import\"\r\n                        onClick={() =>\r\n                          document.getElementById(\"importAIModel\").click()\r\n                        }\r\n                        disabled={loadingOne}\r\n                      >\r\n                        <CloudUploadIcon />\r\n                      </IconButton>\r\n                    </span>\r\n                  </Tooltip>\r\n                  <Tooltip\r\n                    title={\"Export Model\"}\r\n                    placement=\"left\"\r\n                    disableInteractive\r\n                  >\r\n                    <span>\r\n                      <IconButton\r\n                        color=\"primary\"\r\n                        className={classes.iconButton}\r\n                        onClick={handleExportModel}\r\n                        disabled={loadingOne}\r\n                      >\r\n                        <CloudDownload />\r\n                      </IconButton>\r\n                    </span>\r\n                  </Tooltip>\r\n                </div>\r\n                <div\r\n                  style={{\r\n                    width: \"48px\",\r\n                    backgroundColor: \"white\",\r\n                    borderRight: \"8px solid rgb(235,235,235)\",\r\n                    borderBottom: \"1px solid rgb(235,235,235)\",\r\n                    textAlign: \"center\",\r\n                  }}\r\n                >\r\n                  <Tooltip\r\n                    title={\"Export Model Dataset\"}\r\n                    placement=\"left\"\r\n                    disableInteractive\r\n                  >\r\n                    <span>\r\n                      <IconButton\r\n                        className={classes.iconButton}\r\n                        onClick={handleExportModelDataset}\r\n                        disabled={loadingOne}\r\n                      >\r\n                        <SimCardDownload />\r\n                      </IconButton>\r\n                    </span>\r\n                  </Tooltip>\r\n                </div>\r\n\r\n                <div\r\n                  style={{\r\n                    marginTop: \"auto\", // This pushes the div to the bottom\r\n                    width: \"48px\",\r\n                    backgroundColor: \"white\",\r\n                    borderRight: \"8px solid rgb(235,235,235)\",\r\n                    borderTop: \"1px solid rgb(235,235,235)\",\r\n                  }}\r\n                >\r\n                  <Tooltip\r\n                    title={\"Delete Model\"}\r\n                    placement=\"left\"\r\n                    disableInteractive\r\n                  >\r\n                    <span>\r\n                      <IconButton\r\n                        className={classes.iconButton}\r\n                        onClick={handleDeleteModel}\r\n                        disabled={loadingOne}\r\n                      >\r\n                        <DeleteIcon />\r\n                      </IconButton>\r\n                    </span>\r\n                  </Tooltip>\r\n                </div>\r\n              </div>\r\n              <div style={{ flex: 1 }}>\r\n                {importingAIModel && (\r\n                  <div>\r\n                    <b>{\"Importing AI Model ...\"}</b>\r\n                    <LinearProgress className={classes.loading} />\r\n                  </div>\r\n                )}\r\n                {exportingAIModel && (\r\n                  <div>\r\n                    <b>{\"Exporting AI Model ...\"}</b>\r\n                    <LinearProgress className={classes.loading} />\r\n                  </div>\r\n                )}\r\n                {exportingAIModelDataset && (\r\n                  <div>\r\n                    <b>{\"Exporting AI Model Dataset ...\"}</b>\r\n                    <LinearProgress className={classes.loading} />\r\n                  </div>\r\n                )}\r\n                {deletingAIModel && (\r\n                  <div>\r\n                    <b>{\"Deleting AI Model ...\"}</b>\r\n                    <LinearProgress className={classes.loading} />\r\n                  </div>\r\n                )}\r\n                <AIModelsList\r\n                  loading={\r\n                    loadingOne ||\r\n                    importingAIModel ||\r\n                    exportingAIModel ||\r\n                    exportingAIModelDataset ||\r\n                    deletingAIModel\r\n                  }\r\n                  AIModels={filteredModels}\r\n                  selectedModel={\r\n                    filteredModels.some(\r\n                      (model) => model.settings.metaData.name === selectedModel\r\n                    )\r\n                      ? selectedModel\r\n                      : updateSelectedModel()\r\n                  }\r\n                  setSelectedModel={setSelectedModel}\r\n                ></AIModelsList>\r\n              </div>\r\n            </div>\r\n          </Grid>\r\n        </Grid>\r\n      </>\r\n    );\r\n  }\r\n}\r\n\r\n// AIViewer.propTypes = {};\r\n","import React, { useEffect } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\n// HSA\r\nimport Backend from \"../../../common/utils/Backend\";\r\n\r\n// mui\r\nimport { DialogContent, TextField, MenuItem } from \"@mui/material\";\r\nimport { makeStyles } from \"@mui/styles\";\r\nconst useStyles = makeStyles({\r\n  root: {},\r\n  dialogContent: {\r\n    paddingTop: 5,\r\n    maxWidth: 900,\r\n    height: 562,\r\n  },\r\n  textField: {\r\n    marginBottom: 10,\r\n  },\r\n});\r\n\r\nconst StepCaseForm = (props) => {\r\n  const { updateTrigger, caseColumns, setCaseColumns, editCase } = props;\r\n  const classes = useStyles();\r\n  const today = new Date().toISOString().slice(0, 10);\r\n\r\n  useEffect(() => {\r\n    Backend.readAppSettings().then((response) => {\r\n      if (response.caseColumns) {\r\n        updateCaseColumns(\r\n          response.caseColumns.map((item) => {\r\n            if (item.items === null) item.items = [];\r\n            item.value = item.defaultValue;\r\n            if (item.type === \"Date\" && item.defaultValue === \"Current Date\") {\r\n              item.value = today;\r\n            }\r\n            // push a new ref into the refs array for each case column\r\n            return item;\r\n          })\r\n        );\r\n      }\r\n    });\r\n  }, []);\r\n\r\n  useEffect(() => {\r\n    if (caseColumns.length === 0) return;\r\n    const updatedCaseColumns = caseColumns.map((col, idx) => {\r\n      const element = document.getElementById(\"row\" + idx);\r\n      const textFieldValue = element.value;\r\n\r\n      col.value = textFieldValue ? textFieldValue : element.innerText;\r\n      return col;\r\n    });\r\n    setCaseColumns(updatedCaseColumns);\r\n  }, [updateTrigger]);\r\n\r\n  const updateCaseColumns = (newCaseColumns) => {\r\n    if (editCase) {\r\n      let newColumns = newCaseColumns.map((column) => {\r\n        let newColumn = { ...column };\r\n        if (editCase[column.name]) {\r\n          newColumn.value = editCase[column.name];\r\n        }\r\n        return newColumn;\r\n      });\r\n      setCaseColumns(newColumns);\r\n    } else {\r\n      setCaseColumns(newCaseColumns);\r\n    }\r\n  };\r\n\r\n  const getFieldList = () => {\r\n    return caseColumns.map(({ type, label, value, items }, idx) => {\r\n      const TextFieldProps = {\r\n        fullWidth: true,\r\n        label,\r\n        defaultValue: value,\r\n        id: \"row\" + idx,\r\n      };\r\n\r\n      if (type === \"Text area\") {\r\n        return (\r\n          <TextField\r\n            key={idx + value}\r\n            name=\"Textfield\"\r\n            {...TextFieldProps}\r\n            multiline\r\n            minRows=\"1\"\r\n            className={classes.textField}\r\n          />\r\n        );\r\n      } else if (type === \"Options\") {\r\n        return (\r\n          <TextField\r\n            key={idx + value}\r\n            name=\"Textfield\"\r\n            {...TextFieldProps}\r\n            select\r\n            className={classes.textField}\r\n          >\r\n            {items.map((itemValue, itemIdx) => (\r\n              <MenuItem key={`${idx}_${itemIdx}`} value={itemValue.label}>\r\n                {itemValue.label}\r\n              </MenuItem>\r\n            ))}\r\n          </TextField>\r\n        );\r\n      } else if (type === \"Date\") {\r\n        return (\r\n          <TextField\r\n            key={idx + value}\r\n            {...TextFieldProps}\r\n            type=\"date\"\r\n            InputLabelProps={{ shrink: true }}\r\n            style={{ marginBottom: 10 }}\r\n            name=\"Textfield\"\r\n          />\r\n        );\r\n      } else {\r\n        return (\r\n          <TextField\r\n            key={idx + value}\r\n            {...TextFieldProps}\r\n            className={classes.textField}\r\n            name=\"Textfield\"\r\n          />\r\n        );\r\n      }\r\n    });\r\n  };\r\n\r\n  return (\r\n    <DialogContent className={classes.dialogContent}>\r\n      {getFieldList()}\r\n    </DialogContent>\r\n  );\r\n};\r\n\r\nStepCaseForm.propTypes = {\r\n  editCase: PropTypes.object,\r\n  updateTrigger: PropTypes.bool,\r\n  caseColumns: PropTypes.array,\r\n  setCaseColumns: PropTypes.func,\r\n};\r\n\r\nexport default StepCaseForm;\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport { Grid, Button, TextField } from \"@mui/material\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n\r\nconst styles = () => ({\r\n  root: {},\r\n});\r\n\r\n// This is commented out since the attepts to implement an autocomplete\r\n// somehow failed. However, it took time to copy, so it stays for now.\r\n// // Product per specifications\r\n// const products = [\r\n//   { label: \"Bratwurst\", abbr: \"BW\" },\r\n//   { label: \"Kochpökelware\", abbr: \"KO\" },\r\n//   { label: \"Rohpökelware\", abbr: \"RO\" },\r\n//   { label: \"Brühwurst\", abbr: \"BR\" },\r\n//   { label: \"Verarbeitugnsfleisch\", abbr: \"VA\" },\r\n//   { label: \"Separatorenfleisch\", abbr: \"SP\" },\r\n//   { label: \"Hackfleisch roh\", abbr: \"HA\" },\r\n//   { label: \"Hackfleischerz. gegart\", abbr: \"HG\" },\r\n//   { label: \"Kochwurst\", abbr: \"KO\" },\r\n//   { label: \"Rohwurst\", abbr: \"RO\" },\r\n//   { label: \"Aspikwaren\", abbr: \"AS\" },\r\n//   { label: \"Rohfleisch\", abbr: \"RF\" },\r\n//   { label: \"Gegartes Fleisch\", abbr: \"GF\" },\r\n//   { label: \"Kontrollen\", abbr: \"KO\" },\r\n//   { label: \"Stufenkontrollen\", abbr: \"SK\" },\r\n//   { label: \"LVU\", abbr: \"LV\" },\r\n//   { label: \"Zusätze\", abbr: \"ZU\" },\r\n//   { label: \"Fisch\", abbr: \"FI\" },\r\n//   { label: \"Vegetarische Produkte\", abbr: \"VP\" },\r\n//   { label: \"Sonstiges\", abbr: \"SO\" },\r\n// ];\r\n\r\n// const products_2 = [\r\n//   \"BW\",\r\n//   \"KO\",\r\n//   \"RO\",\r\n//   \"BR\",\r\n//   \"VA\",\r\n//   \"SP\",\r\n//   \"HA\",\r\n//   \"HG\",\r\n//   \"AS\",\r\n//   \"RF\",\r\n//   \"GF\",\r\n//   \"SK\",\r\n//   \"LV\",\r\n//   \"ZU\",\r\n//   \"FI\",\r\n//   \"VP\",\r\n//   \"SO\",\r\n// ];\r\n\r\nclass EmptySlideCreation extends Component {\r\n  // Allow format YYYY-XXZZZZZ-FF-TT-SSS-NN\r\n  allowed_formats = [\r\n    /^[0-9]{4}-[0-9]{7}-[0-9_]{2}-[A-Z]{2}-[A-Z0-9_]{3}-[0-9]{2}$/,\r\n  ];\r\n\r\n  constructor(props) {\r\n    super(props);\r\n    this.state = {\r\n      emptyFile_name: \"\",\r\n      ref_regex: React.createRef(),\r\n      valid_regex: false,\r\n    };\r\n  }\r\n\r\n  /**\r\n   * Checks the input against all valid inputs and updates the status accordingly.\r\n   * @param {string} input The currently typed value in the entry field.\r\n   */\r\n  checkFormat = (input) => {\r\n    this.setState({\r\n      valid_regex: this.allowed_formats.some((format) => {\r\n        return format.test(input);\r\n      }),\r\n    });\r\n    this.setState({ emptyFile_name: input });\r\n  };\r\n\r\n  /**\r\n   * The histo classificaation module needs to work without an actual file.\r\n   * Here, the interface is provided to add the relevant information to do so.\r\n   * It mimics the filename structure YYYY-XXZZZZZ-FF-TT-SSS-NN\r\n   * @returns empty file creation interface for histo modules\r\n   */\r\n  render() {\r\n    return (\r\n      <Grid\r\n        id=\"EmptyFileParams\"\r\n        container\r\n        style={{\r\n          border: \"2px solid rgb(218, 218, 218)\",\r\n          overflowY: \"auto\",\r\n        }}\r\n        alignItems=\"center\"\r\n      >\r\n        <Grid item xs={8}>\r\n          <TextField\r\n            error={!this.state.valid_regex && !!this.state.emptyFile_name}\r\n            name=\"Textfield\"\r\n            fullWidth\r\n            inputProps={{ pattern: this.allowed_format }}\r\n            inputRef={this.state.ref_regex}\r\n            label=\"0000-0000000-00-AA-AAA-00\"\r\n            onChange={(e) => this.checkFormat(e.target.value)}\r\n            type=\"text\"\r\n            variant=\"standard\"\r\n            value={this.state.emptyFile_name}\r\n            // Enable adding files with \"Enter\" key.\r\n            onKeyDown={(e) => {\r\n              if (e.key === \"Enter\") {\r\n                e.preventDefault();\r\n\r\n                if (this.state.valid_regex) {\r\n                  // Add file with empty attribute to it\r\n                  this.props.addFile(\r\n                    e,\r\n                    this.state.emptyFile_name.concat(\" (empty)\")\r\n                  );\r\n                  // Clear entry field for next entry\r\n                  this.setState({ emptyFile_name: \"\" });\r\n                }\r\n              }\r\n            }}\r\n          />\r\n        </Grid>\r\n        <Grid item xs={1} />\r\n        {/* Add Button */}\r\n        <Grid item xs={3}>\r\n          <Button\r\n            ref={this.state.ref_button}\r\n            disabled={!this.state.valid_regex || !this.state.emptyFile_name}\r\n            onClick={(event) => {\r\n              // Add file with empty attribute to it\r\n              this.props.addFile(\r\n                event,\r\n                this.state.emptyFile_name.concat(\" (empty)\")\r\n              );\r\n              // Clear entry field for next entry\r\n              this.setState({ emptyFile_name: \"\" });\r\n            }}\r\n          >\r\n            Add Empty Slide\r\n          </Button>\r\n        </Grid>\r\n      </Grid>\r\n    );\r\n  }\r\n}\r\n\r\nEmptySlideCreation.propTypes = {\r\n  addFile: PropTypes.func,\r\n};\r\n\r\nexport default withStyles(styles)(EmptySlideCreation);\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport withStyles from \"@mui/styles/withStyles\";\r\nimport SearchIcon from \"@mui/icons-material/Search\";\r\nimport MoreVertIcon from \"@mui/icons-material/MoreVert\";\r\nimport {\r\n  DialogContent,\r\n  TextField,\r\n  IconButton,\r\n  Grid,\r\n  Checkbox,\r\n  ListItem,\r\n  ListItemButton,\r\n  ListItemText,\r\n  ListItemIcon,\r\n  List,\r\n  Tooltip,\r\n  ListItemSecondaryAction,\r\n  Menu,\r\n  MenuItem,\r\n  Box,\r\n} from \"@mui/material\";\r\nimport Backend from \"../../../common/utils/Backend\";\r\nimport EmptySlideCreation from \"./EmptySlideCreation\";\r\nimport {\r\n  Folder,\r\n  ArrowUpward,\r\n  ArrowDownward,\r\n  Image,\r\n  CheckBox,\r\n  AddToPhotos,\r\n} from \"@mui/icons-material\";\r\n\r\nconst styles = () => ({\r\n  root: {},\r\n  freeHistoParameters: {},\r\n  applyButton: {\r\n    width: \"100%\",\r\n  },\r\n  dialogContent: {\r\n    paddingTop: 0,\r\n    maxWidth: 900,\r\n    height: 562,\r\n  },\r\n  fileList: {\r\n    border: \"2px solid rgb(218, 218, 218)\",\r\n    height: \"100%\",\r\n    overflowY: \"auto\",\r\n    minHeight: \"calc(100% - 35px)\",\r\n    maxHeight: \"500px\",\r\n  },\r\n});\r\n\r\n// The openslide reader cannot work with non-ascii symbols\r\nconst non_utf8_capable_filetypes = [\"mrxs\", \"svs\", \"ndpi\", \"svslide\"];\r\n\r\nclass StepFileSelection extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n    this._isMounted = false;\r\n    this.state = {\r\n      dirfiles: [],\r\n      currentPath: \"\",\r\n      lastFileName: \"\",\r\n      filterText: \"\",\r\n      sortMenuOpen: false,\r\n      sortBy: \"name\",\r\n      sortReverse: true,\r\n    };\r\n\r\n    this.updateFolderList(\"\");\r\n  }\r\n\r\n  componentDidMount() {\r\n    this._isMounted = true;\r\n  }\r\n\r\n  componentWillUnmount() {\r\n    this._isMounted = false;\r\n  }\r\n\r\n  setMountedState = (stateObject, callback) => {\r\n    if (this._isMounted) {\r\n      this.setState(stateObject, callback);\r\n    }\r\n  };\r\n\r\n  getLastDir = (folderPath) => {\r\n    let pathEnding = \"-1\";\r\n    let lastSeperator = folderPath.lastIndexOf(\"/\");\r\n    if (lastSeperator < 0) {\r\n      lastSeperator = folderPath.lastIndexOf(String.fromCharCode(92));\r\n    }\r\n    if (lastSeperator > 0) {\r\n      pathEnding = folderPath.substr(lastSeperator + 1, folderPath.length);\r\n    }\r\n    return pathEnding;\r\n  };\r\n\r\n  onChangeFilter(e) {\r\n    let filterText = e.target.value;\r\n    let { currentPath } = this.state;\r\n    this.setMountedState({ filterText });\r\n    this.updateFolderList(currentPath, filterText);\r\n  }\r\n\r\n  getFilesFromPath = (currentPath, filterText, callback, addAll = false) => {\r\n    let supportedFileFormats = [];\r\n\r\n    switch (this.props.formData.projectType) {\r\n      case \"ProteomeAnalysis\":\r\n        supportedFileFormats = [\"txt\"];\r\n        break;\r\n\r\n      case \"ESREvaluation\":\r\n      case \"ESRTraining\":\r\n        supportedFileFormats = [\"csv\"];\r\n        break;\r\n\r\n      case \"AudioAnnotator\":\r\n        supportedFileFormats = [\"mp3\", \"wav\"];\r\n        break;\r\n\r\n      default:\r\n        supportedFileFormats = [\r\n          \"avi\",\r\n          \"bmp\",\r\n          \"czi\",\r\n          \"dm3\",\r\n          \"gif\",\r\n          \"hsasld\",\r\n          \"jpeg\",\r\n          \"jpg\",\r\n          \"lif\",\r\n          \"mp4\",\r\n          \"mrxs\",\r\n          \"ndpi\",\r\n          \"png\",\r\n          \"scn\",\r\n          \"svs\",\r\n          \"svslide\",\r\n          \"tif\",\r\n          \"tiff\",\r\n          // The following formats are not supported on linux systems\r\n          \"isyntax\",\r\n          \"nd2\",\r\n          \"zvi\",\r\n        ];\r\n    }\r\n    Object.freeze(supportedFileFormats);\r\n\r\n    // load list of available files\r\n    Backend.walkDir(currentPath, true, (e) => {\r\n      let filteredDirFiles = e.filter((entry) => {\r\n        // filter out files with not supported file formats (e.g. .xlsx)\r\n        let pathParts = entry.path.split(\".\");\r\n        let extension = pathParts[pathParts.length - 1].toLowerCase();\r\n        let filename = pathParts[pathParts.length - 2];\r\n        let path = entry.path.split(\"/\")[entry.path.split(\"/\").length - 1];\r\n        let foldersToExclude = [\"DAT\", \"SCS\", \"ANS\"];\r\n        let lastDir = this.getLastDir(entry.path);\r\n        let sameMrxsFile = e.find((element) => {\r\n          return element.path === entry.path + \".mrxs\";\r\n        });\r\n        if (entry.type === \"file\") {\r\n          if (supportedFileFormats.indexOf(extension) < 0) {\r\n            return false;\r\n          }\r\n          // Filter out placeholder file\r\n          if (filename === \"empty_file\") {\r\n            return false;\r\n          }\r\n        }\r\n\r\n        if (filterText !== \"\") {\r\n          if (path.toLowerCase().includes(filterText.toLowerCase())) {\r\n            return true;\r\n          } else {\r\n            return false;\r\n          }\r\n        } else {\r\n          if (entry.type === \"directory\" && !addAll) {\r\n            if (foldersToExclude.includes(lastDir)) return false;\r\n            return typeof sameMrxsFile === \"undefined\";\r\n          } else if (entry.type === \"directory\" && addAll) {\r\n            if (foldersToExclude.includes(lastDir)) return false;\r\n            this.getFilesFromPath(entry.path, filterText, callback, addAll);\r\n          } else {\r\n            return true;\r\n          }\r\n        }\r\n      });\r\n\r\n      let sortedDirFiles = filteredDirFiles.sort((a, b) => {\r\n        if (a.path > b.path) {\r\n          return 1;\r\n        }\r\n        if (a.path < b.path) {\r\n          return -1;\r\n        }\r\n        return 0;\r\n      });\r\n\r\n      callback(sortedDirFiles);\r\n    });\r\n  };\r\n\r\n  updateFolderList = (currentPath, filterText = \"\") => {\r\n    this.getFilesFromPath(currentPath, filterText, (dirfiles) => {\r\n      // write received info into state\r\n      this.setMountedState({\r\n        currentPath: currentPath,\r\n        dirfiles: dirfiles,\r\n      });\r\n    });\r\n  };\r\n\r\n  addFile = (event, fileName) => {\r\n    // Ensure that only ascii-conform paths are used.\r\n    if (\r\n      non_utf8_capable_filetypes.includes(\r\n        fileName.split(\".\").pop().toLowerCase()\r\n      )\r\n    ) {\r\n      let hasMoreThanAscii = [...fileName].some(\r\n        (char) => char.charCodeAt(0) > 127\r\n      );\r\n      if (hasMoreThanAscii) {\r\n        window.showErrorSnackbar(\r\n          \"File type does not support characters such as 'ä', 'ö', 'ü', or 'ß' in path.\"\r\n        );\r\n        window.openWarningDialog(\r\n          \"The file \" +\r\n            fileName +\r\n            \" or its path contain invalid characters such as 'ä', 'ö', 'ü', or 'ß'. \\\r\n            Please rename the file or its folder.\"\r\n        );\r\n        return;\r\n      }\r\n    }\r\n\r\n    let { files } = this.props.formData;\r\n    let { lastFileName, dirfiles } = this.state;\r\n    let dirFilePaths = dirfiles.map((file) => file.path);\r\n    if (event.shiftKey && lastFileName !== \"\") {\r\n      let lastFileIdx = dirFilePaths.indexOf(lastFileName);\r\n      if (lastFileIdx >= 0) {\r\n        let fileIdx = dirFilePaths.indexOf(fileName);\r\n        let firstIdx = Math.min(lastFileIdx, fileIdx);\r\n        let lastIdx = Math.max(lastFileIdx, fileIdx);\r\n        files = files.filter((file) => !dirFilePaths.includes(file));\r\n        for (let i = firstIdx; i <= lastIdx; i++) {\r\n          let fileNameToAdd = dirFilePaths[i];\r\n          files.push(fileNameToAdd);\r\n        }\r\n        this.props.onChangeFiles(files.sort());\r\n      }\r\n    } else {\r\n      if (files.includes(fileName)) {\r\n        files = files.filter((c) => c !== fileName);\r\n      } else {\r\n        files.push(fileName);\r\n      }\r\n      this.setMountedState({ lastFileName: fileName });\r\n      this.props.onChangeFiles(files.sort());\r\n    }\r\n  };\r\n\r\n  toggleAllFiles = (currentPath) => {\r\n    let { dirfiles } = this.state;\r\n    let { files } = this.props.formData;\r\n    if (dirfiles.filter((file) => files.includes(file.path)).length > 0) {\r\n      this.removeFolder(currentPath);\r\n    } else {\r\n      this.addFolder(currentPath);\r\n    }\r\n  };\r\n\r\n  addFolder = (folderPath) => {\r\n    this.getFilesFromPath(\r\n      folderPath,\r\n      \"\",\r\n      (dirfiles) => {\r\n        let filePaths = dirfiles.map((file) => file.path);\r\n        let { files } = this.props.formData;\r\n        let filteredFiles = filePaths.filter(\r\n          (file) => !files.some((x) => file === x)\r\n        );\r\n        let filesToAdd = files.concat(filteredFiles);\r\n        this.props.onChangeFiles(filesToAdd);\r\n      },\r\n      true\r\n    );\r\n  };\r\n\r\n  removeFolder = () => {\r\n    let { files } = this.props.formData;\r\n    let dirFilePaths = this.state.dirfiles.map((file) => file.path);\r\n    let resultFiles = files.filter((file) => dirFilePaths.indexOf(file) < 0);\r\n    if (files.length !== resultFiles.length) {\r\n      this.props.onChangeFiles(resultFiles.sort());\r\n    }\r\n  };\r\n\r\n  isDisabled = (relativePath) => {\r\n    let { project } = this.props;\r\n    if (project && project.previewImageFiles) {\r\n      const projectFiles = [\r\n        ...new Set(project.previewImageFiles.map((file) => file.relativePath)),\r\n      ];\r\n      if (projectFiles.includes(relativePath)) return true;\r\n    }\r\n    return false;\r\n  };\r\n\r\n  toggleSortMenu = () => {\r\n    this.setMountedState({ sortMenuOpen: !this.state.sortMenuOpen });\r\n  };\r\n\r\n  setSortBy = (value) => {\r\n    let { sortBy, sortReverse } = this.state;\r\n\r\n    if (value === sortBy) {\r\n      sortReverse = !sortReverse;\r\n    } else {\r\n      sortReverse = false;\r\n    }\r\n\r\n    let dirfiles = [];\r\n    if (value === \"name\") {\r\n      dirfiles = this.state.dirfiles.sort((a, b) => {\r\n        if (a.path > b.path) {\r\n          return 1;\r\n        }\r\n        if (a.path < b.path) {\r\n          return -1;\r\n        }\r\n        return 0;\r\n      });\r\n    } else {\r\n      dirfiles = this.state.dirfiles.sort((a, b) => {\r\n        if (a.creationTime > b.creationTime) {\r\n          return 1;\r\n        }\r\n        if (a.creationTime < b.creationTime) {\r\n          return -1;\r\n        }\r\n        return 0;\r\n      });\r\n    }\r\n    if (!sortReverse) {\r\n      dirfiles = dirfiles.reverse();\r\n    }\r\n\r\n    this.setMountedState({\r\n      dirfiles: dirfiles,\r\n      sortMenuOpen: false,\r\n      sortBy: value,\r\n      sortReverse: sortReverse,\r\n    });\r\n  };\r\n\r\n  /**\r\n   * Sets an image to the default error image when there is an error.\r\n   * @param {field} e The field event\r\n   */\r\n  image_error = (e) => {\r\n    e.target.src = \"/img/image_error.svg\";\r\n  };\r\n\r\n  render() {\r\n    const { classes } = this.props;\r\n    const { files } = this.props.formData;\r\n    const {\r\n      dirfiles,\r\n      currentPath,\r\n      filterText,\r\n      sortMenuOpen,\r\n      sortBy,\r\n      sortReverse,\r\n    } = this.state;\r\n\r\n    return (\r\n      <DialogContent className={classes.dialogContent}>\r\n        <Grid\r\n          container\r\n          style={{\r\n            display: \"grid\",\r\n            gridTemplateRows: \"1fr auto\",\r\n            overflow: \"hidden\",\r\n            height: \"100%\",\r\n          }}\r\n        >\r\n          <Grid container style={{ overflow: \"hidden\" }}>\r\n            <Grid item xs={6} style={{ height: \"100%\" }}>\r\n              <div style={{ position: \"relative\" }}>\r\n                <Box\r\n                  display=\"flex\"\r\n                  alignItems=\"center\"\r\n                  justifyContent=\"space-between\"\r\n                  height=\"50px\"\r\n                >\r\n                  <Box fontSize=\"16px\">Your Microscope Image Files:</Box>\r\n                  <Box>\r\n                    <Tooltip disableInteractive title=\"Sort By\">\r\n                      <IconButton\r\n                        ref={(node) => {\r\n                          this.anchorEl = node;\r\n                        }}\r\n                        aria-controls=\"sort-menu\"\r\n                        aria-haspopup=\"true\"\r\n                        onClick={() => this.toggleSortMenu()}\r\n                        size=\"large\"\r\n                      >\r\n                        <MoreVertIcon />\r\n                      </IconButton>\r\n                    </Tooltip>\r\n                    <Menu\r\n                      id=\"sort-menu\"\r\n                      keepMounted\r\n                      anchorEl={this.anchorEl}\r\n                      open={sortMenuOpen}\r\n                      onClose={() => this.toggleSortMenu()}\r\n                    >\r\n                      <MenuItem onClick={() => this.setSortBy(\"name\")}>\r\n                        Sort by name{\" \"}\r\n                        {sortBy === \"name\" && (\r\n                          <span>\r\n                            {sortReverse ? <ArrowUpward /> : <ArrowDownward />}\r\n                          </span>\r\n                        )}\r\n                      </MenuItem>\r\n                      <MenuItem onClick={() => this.setSortBy(\"date\")}>\r\n                        Sort by creation date{\" \"}\r\n                        {sortBy === \"date\" && (\r\n                          <span>\r\n                            {sortReverse ? <ArrowUpward /> : <ArrowDownward />}\r\n                          </span>\r\n                        )}\r\n                      </MenuItem>\r\n                    </Menu>\r\n                  </Box>\r\n                </Box>\r\n              </div>\r\n\r\n              <div style={{ position: \"absolute\", top: 5, right: 24 }}>\r\n                <SearchIcon\r\n                  style={{\r\n                    display: \"inline-block\",\r\n                    fill: \"lightgray\",\r\n                    marginTop: 20,\r\n                  }}\r\n                />\r\n                <TextField\r\n                  autoFocus\r\n                  id=\"SearchFolderAndFiles\"\r\n                  variant=\"standard\"\r\n                  fullWidth\r\n                  style={{\r\n                    width: \"200px\",\r\n                    marginLeft: 6,\r\n                    marginTop: 0,\r\n                    display: \"inline-block\",\r\n                  }}\r\n                  key={\"filterText\"}\r\n                  margin=\"normal\"\r\n                  label={\"Search Folders/Files\"}\r\n                  value={filterText}\r\n                  onChange={(e) => this.onChangeFilter(e)}\r\n                />\r\n              </div>\r\n              <List dense={true} className={classes.fileList}>\r\n                {currentPath && (\r\n                  <ListItem>\r\n                    <ListItemIcon\r\n                      style={{ marginLeft: \"-8px\", marginRight: \"-10px\" }}\r\n                    >\r\n                      <Checkbox\r\n                        name=\"CheckboxToggleAllFiles\"\r\n                        checked={\r\n                          dirfiles.filter((file) => files.includes(file.path))\r\n                            .length > 0\r\n                        }\r\n                        onChange={() => this.toggleAllFiles(currentPath)}\r\n                      />\r\n                    </ListItemIcon>\r\n                    <ListItemIcon>\r\n                      <Tooltip\r\n                        disableInteractive\r\n                        title={`Up to \"${\r\n                          currentPath.substring(\r\n                            0,\r\n                            currentPath.lastIndexOf(\"/\")\r\n                          ) || \"root\"\r\n                        }\"`}\r\n                      >\r\n                        <IconButton\r\n                          onClick={() => {\r\n                            this.updateFolderList(\r\n                              currentPath.substring(\r\n                                0,\r\n                                currentPath.lastIndexOf(\"/\")\r\n                              )\r\n                            );\r\n                          }}\r\n                          size=\"large\"\r\n                        >\r\n                          <ArrowUpward />\r\n                        </IconButton>\r\n                      </Tooltip>\r\n                    </ListItemIcon>\r\n                    <ListItemText primary={currentPath} />\r\n                  </ListItem>\r\n                )}\r\n                {dirfiles.map((e, id) =>\r\n                  e.type === \"file\" ? (\r\n                    <ListItemButton\r\n                      key={id}\r\n                      disabled={this.isDisabled(e.path)}\r\n                      onClick={(clickEvent) => this.addFile(clickEvent, e.path)}\r\n                    >\r\n                      <ListItemIcon>\r\n                        <Tooltip\r\n                          disableInteractive\r\n                          title={\r\n                            <div\r\n                              style={{ display: \"inline-block\" }}\r\n                              key={e.path}\r\n                            >\r\n                              <div style={{ display: \"inline-block\" }}>\r\n                                {\r\n                                  <img\r\n                                    style={{\r\n                                      display: \"block\",\r\n                                      background: \"black\",\r\n                                      margin: \"5px\",\r\n                                      objectFit: \"contain\",\r\n                                    }}\r\n                                    width=\"200\"\r\n                                    height=\"200\"\r\n                                    src={Backend.imageThumbnail(\r\n                                      encodeURIComponent(e.path)\r\n                                    )}\r\n                                    onError={this.image_error}\r\n                                    alt=\"Preview Image\"\r\n                                  />\r\n                                }\r\n                                <div\r\n                                  style={{\r\n                                    width: \"100%\",\r\n                                    textAlign: \"center\",\r\n                                  }}\r\n                                >\r\n                                  {e.path}\r\n                                </div>\r\n                              </div>\r\n                            </div>\r\n                          }\r\n                        >\r\n                          {files.includes(e.path) ? (\r\n                            <CheckBox name=\"CheckboxPath\" style={{ color: \"#0078D7\" }} />\r\n                          ) : (\r\n                            <Image />\r\n                          )}\r\n                        </Tooltip>\r\n                      </ListItemIcon>\r\n                      <Tooltip\r\n                        disableInteractive\r\n                        title={\r\n                          <div>\r\n                            <div style={{ width: 80, display: \"inline-block\" }}>\r\n                              File Size:{\" \"}\r\n                            </div>\r\n                            {e.fileSize}\r\n                            <br />\r\n                            <div style={{ width: 80, display: \"inline-block\" }}>\r\n                              Creation Date:{\" \"}\r\n                            </div>\r\n                            {e.creationTime}\r\n                          </div>\r\n                        }\r\n                      >\r\n                        <ListItemText\r\n                          primary={e.path.replace(/^.*[\\\\/]/, \"\")}\r\n                          style={{\r\n                            textOverflow: \"ellipsis\",\r\n                            overflow: \"hidden\",\r\n                            color: e.loaded ? \"#08c21d\" : \"#000000\",\r\n                          }}\r\n                        />\r\n                      </Tooltip>\r\n                    </ListItemButton>\r\n                  ) : (\r\n                    <ListItemButton\r\n                      key={id}\r\n                      onClick={() => this.updateFolderList(e.path)}\r\n                    >\r\n                      <ListItemIcon style={{ color: \"#FFE896\" }}>\r\n                        <Folder />\r\n                      </ListItemIcon>\r\n                      <ListItemText\r\n                        primary={e.path.replace(/^.*[\\\\/]/, \"\")}\r\n                        style={{ textOverflow: \"ellipsis\", overflow: \"hidden\" }}\r\n                      />\r\n                      <ListItemSecondaryAction>\r\n                        <Tooltip disableInteractive title=\"Add folder\">\r\n                          <IconButton\r\n                            onClick={() => this.addFolder(e.path)}\r\n                            size=\"large\"\r\n                          >\r\n                            <AddToPhotos />\r\n                          </IconButton>\r\n                        </Tooltip>\r\n                      </ListItemSecondaryAction>\r\n                    </ListItemButton>\r\n                  )\r\n                )}\r\n              </List>\r\n            </Grid>\r\n            <Grid item xs={6} style={{ height: \"100%\" }}>\r\n              <Box\r\n                display=\"flex\"\r\n                alignItems=\"center\"\r\n                justifyContent=\"space-between\"\r\n                height=\"50px\"\r\n              >\r\n                {this.props.selectionTarget} Files:\r\n              </Box>\r\n              <List dense={true} className={classes.fileList}>\r\n                {files.map((e, i) => (\r\n                  <Tooltip disableInteractive key={i} title={e}>\r\n                    <ListItemButton\r\n                      disabled={this.isDisabled(e)}\r\n                      onClick={(clickEvent) => this.addFile(clickEvent, e)}\r\n                    >\r\n                      <ListItemIcon style={{ color: \"#0078D7\" }}>\r\n                        <CheckBox style={{ color: \"#0078D7\" }} />\r\n                      </ListItemIcon>\r\n                      <ListItemText primary={e} />\r\n                    </ListItemButton>\r\n                  </Tooltip>\r\n                ))}\r\n              </List>\r\n            </Grid>\r\n          </Grid>\r\n          {/* Allow slide-free projects in Hist Classification Module. */}\r\n          {/* Meta-Data will need to be entered manually. */}\r\n          {this.props.formData.projectType === \"HistoClassification\" && (\r\n            <EmptySlideCreation addFile={this.addFile} />\r\n          )}\r\n        </Grid>\r\n      </DialogContent>\r\n    );\r\n  }\r\n}\r\n\r\nStepFileSelection.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  selectionTarget: PropTypes.string.isRequired,\r\n  project: PropTypes.object,\r\n  formData: PropTypes.object,\r\n  onChangeFiles: PropTypes.func,\r\n};\r\n\r\nexport default withStyles(styles)(StepFileSelection);\r\n","import React, { useState, useEffect } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport { ValidatorForm } from \"react-material-ui-form-validator\";\r\nimport { Button, Dialog, DialogTitle, MobileStepper } from \"@mui/material\";\r\nimport { KeyboardArrowLeft, KeyboardArrowRight } from \"@mui/icons-material\";\r\n\r\nimport StepCaseForm from \"./CreateCaseDialogComponents/StepCaseForm\";\r\nimport StepFileSelection from \"./CreateProjectdialogComponents/StepFileSelection\";\r\nimport Backend from \"../../common/utils/Backend\";\r\n\r\nconst nextStepState = Object.freeze({\r\n  NEXT: \"Next\",\r\n  CREATE: \"Create\",\r\n  EDIT: \"Edit\",\r\n});\r\n\r\nconst activeStepState = Object.freeze({\r\n  FORM: 0,\r\n  FILE_SELECTION: 1,\r\n});\r\n\r\nconst CreateCaseDialog = (props) => {\r\n  const { open, setOpen, editCase } = props;\r\n  const [updateTrigger, setUpdateTrigger] = useState(false);\r\n  const [activeStep, setActiveStep] = useState(activeStepState.FORM);\r\n  const [formData, setFormData] = useState({ files: [] });\r\n  const [caseColumns, setCaseColumns] = useState([]);\r\n  const [nextButtonState, setNextButtonState] = useState(nextStepState.NEXT);\r\n\r\n  useEffect(() => {\r\n    window.addEventListener(\"keydown\", handleKeyPress);\r\n    return () => window.removeEventListener(\"keydown\", handleKeyPress);\r\n  }, []);\r\n\r\n  // handle open dialog and set edit case if edit mode\r\n  useEffect(() => {\r\n    if (open) {\r\n      setActiveStep(activeStepState.FORM);\r\n      setFormData({ files: [] });\r\n    }\r\n    if (editCase === null) {\r\n      return;\r\n    }\r\n    setCaseColumns((prevCaseColumns) => {\r\n      let newColumns = prevCaseColumns.map((column) => {\r\n        let newColumn = { ...column };\r\n        if (editCase[column.name]) {\r\n          newColumn.value = editCase[column.name];\r\n        }\r\n        return newColumn;\r\n      });\r\n      return newColumns;\r\n    });\r\n    if (editCase.Files.length > 0) {\r\n      setFormData((prevFormData) => {\r\n        return { ...prevFormData, files: editCase.Files };\r\n      });\r\n    }\r\n  }, [open]);\r\n\r\n  useEffect(() => {\r\n    if (activeStep === activeStepState.FORM) {\r\n      setNextButtonState(nextStepState.NEXT);\r\n    } else if (activeStep === activeStepState.FILE_SELECTION) {\r\n      if (editCase) {\r\n        setNextButtonState(nextStepState.EDIT);\r\n      } else {\r\n        setNextButtonState(nextStepState.CREATE);\r\n      }\r\n    }\r\n  }, [activeStep]);\r\n\r\n  const handleKeyPress = ({ key }) => {\r\n    if (!open) return;\r\n    if (key === \"Enter\") handleNext();\r\n  };\r\n\r\n  const handleSave = () => {\r\n    const data = {\r\n      files: formData.files,\r\n      caseColumns: caseColumns.filter((column) => column.id !== \"FileNum\"),\r\n    };\r\n    if (editCase) {\r\n      Backend.editCase(editCase.Id, data).then((response) => {\r\n        if (response.ok) {\r\n          window.showSuccessSnackbar(\"Case Created\");\r\n          props.updateCases();\r\n        }\r\n      });\r\n    } else {\r\n      Backend.createCase(data).then(() => {\r\n        window.showSuccessSnackbar(\"Case Created\");\r\n        props.updateCases();\r\n      });\r\n    }\r\n  };\r\n\r\n  const handleNext = () => {\r\n    if (activeStep === activeStepState.FILE_SELECTION) {\r\n      handleSave();\r\n      setOpen(false);\r\n      return;\r\n    }\r\n    setUpdateTrigger((prevUpdateTrigger) => !prevUpdateTrigger);\r\n    setActiveStep((prevActiveStep) => prevActiveStep + 1);\r\n  };\r\n\r\n  const handleBack = () => setActiveStep(activeStep - 1);\r\n\r\n  const onChangeFiles = (e) => setFormData({ ...formData, files: e });\r\n\r\n  return (\r\n    <>\r\n      <Dialog onClose={() => setOpen(false)} open={open} maxWidth=\"lg\">\r\n        <DialogTitle>Create New Case</DialogTitle>\r\n        <ValidatorForm onSubmit={handleNext} style={{ width: 800 }}>\r\n          {activeStep === activeStepState.FORM && (\r\n            <StepCaseForm\r\n              updateTrigger={updateTrigger}\r\n              editCase={editCase}\r\n              caseColumns={caseColumns}\r\n              setCaseColumns={setCaseColumns}\r\n            />\r\n          )}\r\n          {activeStep === activeStepState.FILE_SELECTION && (\r\n            <StepFileSelection\r\n              selectionTarget=\"Case\"\r\n              key=\"2\"\r\n              formData={formData}\r\n              onChangeFiles={onChangeFiles}\r\n            />\r\n          )}\r\n          <MobileStepper\r\n            variant=\"dots\"\r\n            steps={2}\r\n            position=\"static\"\r\n            activeStep={activeStep}\r\n            nextButton={\r\n              <Button size=\"small\" type=\"submit\">\r\n                {nextButtonState}\r\n                <KeyboardArrowRight />\r\n              </Button>\r\n            }\r\n            backButton={\r\n              <Button\r\n                size=\"small\"\r\n                onClick={handleBack}\r\n                disabled={activeStep === 0}\r\n              >\r\n                <KeyboardArrowLeft />\r\n                {\"Back\"}\r\n              </Button>\r\n            }\r\n          />\r\n        </ValidatorForm>\r\n      </Dialog>\r\n    </>\r\n  );\r\n};\r\n\r\nCreateCaseDialog.propTypes = {\r\n  open: PropTypes.bool,\r\n  setOpen: PropTypes.func,\r\n  editCase: PropTypes.object,\r\n  updateCases: PropTypes.func.isRequired,\r\n};\r\n\r\nexport default CreateCaseDialog;\r\n","import React, { useState } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport {\r\n  Table,\r\n  TableBody,\r\n  TableCell,\r\n  TableContainer,\r\n  TableHead,\r\n  TableRow,\r\n  Paper,\r\n  TableSortLabel,\r\n  Checkbox,\r\n  Menu,\r\n  MenuItem,\r\n  IconButton,\r\n  ListItemIcon,\r\n  ListItemText,\r\n} from \"@mui/material\";\r\n\r\nimport { makeStyles } from \"@mui/styles\";\r\nimport MoreVertIcon from \"@mui/icons-material/MoreVert\";\r\nimport DeleteIcon from \"@mui/icons-material/Delete\";\r\nimport EditIcon from \"@mui/icons-material/Edit\";\r\nimport { isColorLight } from \"../../common/utils/Utils\";\r\nimport { withRouter } from \"react-router-dom\";\r\n\r\nconst useStyles = makeStyles({\r\n  root: {\r\n    width: \"100%\",\r\n    height: \"100%\",\r\n    overflow: \"auto\",\r\n  },\r\n  caseStateContainer: {\r\n    borderRadius: 5,\r\n    padding: 5,\r\n    width: \"100%\",\r\n    textAlign: \"center\",\r\n    border: \"1px solid rgba(0, 0, 0, 0.54)\",\r\n    color: \"white\",\r\n  },\r\n  tagBox: {\r\n    // <--- in case tags will be added in the future\r\n    display: \"inline-block\",\r\n    width: 20,\r\n    height: 20,\r\n    borderRadius: 5,\r\n    color: \"#fff\",\r\n    border: \"1px solid rgba(0, 0, 0, 0.54)\",\r\n    margin: 2,\r\n  },\r\n  row: {\r\n    cursor: \"pointer\",\r\n  },\r\n});\r\n\r\nconst DynamicCaseTable = (props) => {\r\n  const classes = useStyles();\r\n  const { cases, onDeleteRow, columns, history } = props;\r\n\r\n  const [order, setOrder] = useState(\"asc\");\r\n  const [orderBy, setOrderBy] = useState(columns[0].CreationDateTime);\r\n  const [columnVisibility, setColumnVisibility] = useState(\r\n    columns.reduce(\r\n      (acc, column) => ({ ...acc, [column.id]: column.visible }),\r\n      {}\r\n    )\r\n  );\r\n  const [anchorEl, setAnchorEl] = useState(null);\r\n\r\n  const handleRequestSort = (property) => {\r\n    const isAsc = orderBy === property && order === \"asc\";\r\n    setOrder(isAsc ? \"desc\" : \"asc\");\r\n    setOrderBy(property);\r\n  };\r\n\r\n  const handleColumnVisibility = (columnId) => {\r\n    setColumnVisibility((prevColumnVisibility) => ({\r\n      ...prevColumnVisibility,\r\n      [columnId]: !prevColumnVisibility[columnId],\r\n    }));\r\n  };\r\n\r\n  const handleClick = (event) => {\r\n    setAnchorEl(event.currentTarget);\r\n  };\r\n\r\n  const handleClose = () => {\r\n    setAnchorEl(null);\r\n  };\r\n\r\n  const stableSort = (array, order, orderBy) => {\r\n    const sortedArray = array.sort((a, b) => {\r\n      const orderByA =\r\n        typeof a[orderBy] === \"object\" ? a[orderBy].length : a[orderBy];\r\n      const orderByB =\r\n        typeof b[orderBy] === \"object\" ? b[orderBy].length : b[orderBy];\r\n      if (order === \"asc\") {\r\n        return orderByA < orderByB ? -1 : 1;\r\n      } else {\r\n        return orderByA < orderByB ? 1 : -1;\r\n      }\r\n    });\r\n    return sortedArray;\r\n  };\r\n\r\n  const handleRowClick = (row) => {\r\n    history.push(\"/file_view/\" + row.Id);\r\n  };\r\n  return (\r\n    <TableContainer className={classes.root} component={Paper}>\r\n      <Table>\r\n        <TableHead>\r\n          <TableRow>\r\n            {columns.map(\r\n              (column) =>\r\n                columnVisibility[column.id] && (\r\n                  <TableCell key={column.id + \"_headCell\"}>\r\n                    <TableSortLabel\r\n                      active={orderBy === column.id}\r\n                      direction={orderBy === column.id ? order : \"asc\"}\r\n                      onClick={() => handleRequestSort(column.id)}\r\n                    >\r\n                      {column.label}\r\n                    </TableSortLabel>\r\n                  </TableCell>\r\n                )\r\n            )}\r\n            <TableCell key={\"sortIcon_headCell\"}>\r\n              <IconButton onClick={handleClick}>\r\n                <MoreVertIcon />\r\n              </IconButton>\r\n              <Menu\r\n                anchorEl={anchorEl}\r\n                open={Boolean(anchorEl)}\r\n                onClose={handleClose}\r\n              >\r\n                {columns.map((column) => (\r\n                  <MenuItem\r\n                    key={column.id + \"_filterMenuItem\"}\r\n                    onClick={() => handleColumnVisibility(column.id)}\r\n                  >\r\n                    <ListItemIcon>\r\n                      <Checkbox\r\n                        name=\"CheckboxColumnVisibility\"\r\n                        edge=\"start\"\r\n                        checked={columnVisibility[column.id]}\r\n                        tabIndex={-1}\r\n                        disableRipple\r\n                      />\r\n                    </ListItemIcon>\r\n                    <ListItemText primary={column.label} />\r\n                  </MenuItem>\r\n                ))}\r\n              </Menu>\r\n            </TableCell>\r\n          </TableRow>\r\n        </TableHead>\r\n        <TableBody>\r\n          {stableSort(cases, order, orderBy).map((row, idx) => {\r\n            return (\r\n              <TableRow\r\n                key={idx}\r\n                hover\r\n                className={classes.row}\r\n                onClick={() => handleRowClick(row)}\r\n              >\r\n                {columns.map((column) => {\r\n                  const cellIsVisible = columnVisibility[column.id];\r\n                  if (!cellIsVisible) return null;\r\n                  let value = row[column.id];\r\n                  if (column.items.length > 0) {\r\n                    const item = column.items.find(\r\n                      (item) => item.label === value\r\n                    );\r\n                    if (\r\n                      item &&\r\n                      item.color !== \"#ffffff\" &&\r\n                      item.color !== \"#fff\"\r\n                    ) {\r\n                      value = (\r\n                        <div\r\n                          className={classes.caseStateContainer}\r\n                          style={{\r\n                            background: item.color,\r\n                            color: isColorLight(item.color)\r\n                              ? \"inherit\"\r\n                              : \"white\",\r\n                          }}\r\n                        >\r\n                          {row[column.id]}\r\n                        </div>\r\n                      );\r\n                    }\r\n                  }\r\n                  if (value === null) value = \"\";\r\n                  return (\r\n                    <TableCell key={column.id + \"_SortCell\"}>\r\n                      {typeof value === \"object\" && value.type !== \"div\"\r\n                        ? value.length\r\n                        : value}\r\n                    </TableCell>\r\n                  );\r\n                })}\r\n                <TableCell>\r\n                  <IconButton onClick={(e) => props.onEditRow(e, row)}>\r\n                    <EditIcon />\r\n                  </IconButton>\r\n                  <IconButton onClick={() => onDeleteRow(row)}>\r\n                    <DeleteIcon />\r\n                  </IconButton>\r\n                </TableCell>\r\n              </TableRow>\r\n            );\r\n          })}\r\n        </TableBody>\r\n      </Table>\r\n    </TableContainer>\r\n  );\r\n};\r\n\r\nDynamicCaseTable.propTypes = {\r\n  cases: PropTypes.array.isRequired,\r\n  columns: PropTypes.array.isRequired,\r\n  onDeleteRow: PropTypes.func.isRequired,\r\n  onEditRow: PropTypes.func.isRequired,\r\n  history: PropTypes.object,\r\n};\r\n\r\nexport default withRouter(DynamicCaseTable);\r\n","import React, { useEffect, useState } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport { Paper, Fab } from \"@mui/material\";\r\nimport CreateCaseDialog from \"../../home/dialogs/CreateCaseDialog\";\r\nimport DynamicCaseTable from \"./DynamicCaseTable\";\r\nimport AddIcon from \"@mui/icons-material/Add\";\r\nimport { makeStyles } from \"@mui/styles\";\r\n\r\nconst useStyles = makeStyles((theme) => ({\r\n  root: {\r\n    position: \"relative\",\r\n    width: \"100%\",\r\n    height: \"100%\",\r\n    overflow: \"hidden\",\r\n  },\r\n  fab: {\r\n    position: \"absolute\",\r\n    bottom: theme.spacing(2),\r\n    right: theme.spacing(2),\r\n  },\r\n}));\r\n\r\nconst CasesTable = (props) => {\r\n  const { caseColumnsData, cases, onDeleteRow, updateCases } = props;\r\n  const classes = useStyles();\r\n  const [editCase, setEditCase] = useState(null);\r\n  const [isCreateCaseDialogOpen, setIsCreateCaseDialogOpen] = useState(false);\r\n\r\n  const onEditRow = (e, row) => {\r\n    e.stopPropagation();\r\n    setEditCase(row);\r\n  };\r\n\r\n  useEffect(() => {\r\n    if (!isCreateCaseDialogOpen) {\r\n      setEditCase(null);\r\n    }\r\n  }, [isCreateCaseDialogOpen]);\r\n\r\n  useEffect(() => {\r\n    if (editCase) {\r\n      setIsCreateCaseDialogOpen(true);\r\n    }\r\n  }, [editCase]);\r\n\r\n  const handleCaseDialogOpen = () => setIsCreateCaseDialogOpen(true);\r\n\r\n  return (\r\n    <Paper className={classes.root}>\r\n      {caseColumnsData.length > 0 && (\r\n        <DynamicCaseTable\r\n          cases={cases}\r\n          columns={caseColumnsData}\r\n          onDeleteRow={onDeleteRow}\r\n          onEditRow={onEditRow}\r\n        />\r\n      )}\r\n      <CreateCaseDialog\r\n        editCase={editCase}\r\n        open={isCreateCaseDialogOpen}\r\n        setOpen={(value) => setIsCreateCaseDialogOpen(value)}\r\n        updateCases={updateCases}\r\n      />\r\n      <Fab\r\n        className={classes.fab}\r\n        color=\"primary\"\r\n        aria-label=\"add\"\r\n        onClick={handleCaseDialogOpen}\r\n      >\r\n        <AddIcon />\r\n      </Fab>\r\n    </Paper>\r\n  );\r\n};\r\n\r\nCasesTable.propTypes = {\r\n  caseColumnsData: PropTypes.array.isRequired,\r\n  cases: PropTypes.array.isRequired,\r\n  onDeleteRow: PropTypes.func.isRequired,\r\n  updateCases: PropTypes.func.isRequired,\r\n};\r\n\r\nexport default CasesTable;\r\n","import React, { useState, useEffect } from \"react\";\r\nimport { Paper } from \"@mui/material\";\r\nimport CasesTable from \"./components/CasesTable\";\r\nimport Backend from \"../common/utils/Backend\";\r\nimport { makeStyles } from \"@mui/styles\";\r\n\r\nconst useStyles = makeStyles({\r\n  root: {\r\n    background: \"#EEEEEE\",\r\n    width: \"100%\",\r\n    height: \"100%\",\r\n    padding: 5,\r\n  },\r\n  casesContainer: {\r\n    height: \"100%\",\r\n  },\r\n  paper: {\r\n    padding: 0,\r\n    display: \"flex\",\r\n    justifyContent: \"center\",\r\n    overflow: \"auto\",\r\n    height: \"100%\",\r\n  },\r\n});\r\n\r\n// orders case columns lilke appsettingsCols, if col exist, otherwise at the end\r\nconst orderCaseCols = (appsettingsCols, allCaseCalls) => {\r\n  return allCaseCalls.sort((a, b) => {\r\n    const aIdx = appsettingsCols.findIndex((col) => col.name === a.id);\r\n    const bIdx = appsettingsCols.findIndex((col) => col.name === b.id);\r\n    if (aIdx === -1 && bIdx === -1) {\r\n      return 0;\r\n    } else if (aIdx === -1) {\r\n      return 1;\r\n    } else if (bIdx === -1) {\r\n      return -1;\r\n    } else {\r\n      return aIdx - bIdx;\r\n    }\r\n  });\r\n};\r\n\r\nconst CasesPage = () => {\r\n  const classes = useStyles();\r\n  const [cases, setCases] = useState([]);\r\n  const [caseColumnsData, setCaseColumnsData] = useState([]);\r\n\r\n  useEffect(() => {\r\n    updateCases();\r\n  }, []);\r\n\r\n  const updateCases = () => {\r\n    Promise.all([\r\n      Backend.listCases(),\r\n      Backend.readAppSettings()?.then((newAppsettings) => {\r\n        return newAppsettings;\r\n      }),\r\n    ]).then(([casesResponse, appsettingsResponse]) => {\r\n      const cases = casesResponse?.cases.map((item) => {\r\n        const singleCase = item.data;\r\n        singleCase.Files = item.filePaths;\r\n        return singleCase;\r\n      });\r\n      const initCaseCols = appsettingsResponse?.caseColumns;\r\n\r\n      setCases(cases);\r\n      let caseColumnsData = [];\r\n      if (cases.length > 0) {\r\n        caseColumnsData = Object.keys(cases[0])\r\n          .filter((key) => key !== \"Id\")\r\n          .map((key) => ({ id: key, label: key, visible: false }));\r\n      }\r\n\r\n      const newCaseCols = caseColumnsData.map((caseColumn) => {\r\n        const matchingCaseCol = initCaseCols?.find(\r\n          (initCaseCol) => initCaseCol.name === caseColumn.id\r\n        );\r\n        if (matchingCaseCol && matchingCaseCol.id === \"Files\") {\r\n          matchingCaseCol.visible = true;\r\n        }\r\n        return {\r\n          id: caseColumn.id,\r\n          label: matchingCaseCol?.label ?? caseColumn.label,\r\n          visible: matchingCaseCol?.visible === \"true\" ?? false,\r\n          items: matchingCaseCol?.items ?? [],\r\n        };\r\n      });\r\n\r\n      // Make sure Files is always visible at the beginning\r\n      newCaseCols.find((initCaseCol) => {\r\n        if (initCaseCol.id === \"Files\") {\r\n          initCaseCol.visible = true;\r\n        }\r\n      });\r\n\r\n      const orderedNewCaseCols = orderCaseCols(initCaseCols, newCaseCols);\r\n      setCaseColumnsData(orderedNewCaseCols);\r\n    });\r\n  };\r\n\r\n  const onDeleteRow = (row) => {\r\n    window.openResponseDialog(\"Delete Case forever?\", (response) => {\r\n      if (response) {\r\n        Backend.deleteCase(row.Id).then((response) => {\r\n          if (response?.success) {\r\n            window.showSuccessSnackbar(\"Case deleted\");\r\n          } else {\r\n            window.showErrorSnackbar(\"Case could not be deleted\");\r\n          }\r\n          updateCases();\r\n        });\r\n      }\r\n    });\r\n  };\r\n\r\n  return (\r\n    <div className={classes.root}>\r\n      <Paper className={classes.paper}>\r\n        <CasesTable\r\n          caseColumnsData={caseColumnsData}\r\n          cases={cases}\r\n          onDeleteRow={onDeleteRow}\r\n          updateCases={updateCases}\r\n        />\r\n      </Paper>\r\n    </div>\r\n  );\r\n};\r\n\r\nexport default CasesPage;\r\n","import React, { Component } from \"react\";\r\nimport Button from \"@mui/material/Button\";\r\nimport Dialog from \"@mui/material/Dialog\";\r\nimport DialogActions from \"@mui/material/DialogActions\";\r\nimport DialogContent from \"@mui/material/DialogContent\";\r\nimport DialogContentText from \"@mui/material/DialogContentText\";\r\nimport DialogTitle from \"@mui/material/DialogTitle\";\r\nimport TextField from \"@mui/material/TextField\";\r\n\r\nclass CustomDialog extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n\r\n    this.state = {\r\n      open: false,\r\n      title: \"\",\r\n      content: \"\",\r\n      dialogState: \"confirm\",\r\n      responseFunction: null,\r\n    };\r\n\r\n    window.openResponseDialog = this.handleConfirmOpen;\r\n    window.openErrorDialog = this.handleErrorOpen;\r\n    window.openWarningDialog = this.handleWarningOpen;\r\n    window.openConfirmationDialog = this.awaitUserConfirmation;\r\n  }\r\n\r\n  handleConfirmOpen = (title, responseFunction) => {\r\n    this.setState({\r\n      title: title,\r\n      content: \"\",\r\n      open: true,\r\n      dialogState: \"confirm\",\r\n      responseFunction: responseFunction,\r\n    });\r\n  };\r\n\r\n  /**\r\n   * Promt the user for a yes/no decision that will pause program execution until the choise is made.\r\n   * @param {string} title The short title of the user-prompt to show.\r\n   * @param {string} content Longer content in the body of the propmt.\r\n   * @returns {Promise} A promise that returns the user choise as boolean.\r\n   */\r\n  awaitUserConfirmation = async (title, content) => {\r\n    return new Promise((resolve) => {\r\n      this.setState({\r\n        title: title,\r\n        content: content ? content : \"\",\r\n        open: true,\r\n        dialogState: \"confirm\",\r\n        responseFunction: (confirmed) => resolve(confirmed),\r\n      });\r\n    });\r\n  };\r\n\r\n  handleErrorOpen = (content) => {\r\n    this.setState({\r\n      title: \"Error\",\r\n      content: content,\r\n      dialogState: \"error\",\r\n      open: true,\r\n    });\r\n  };\r\n\r\n  handleWarningOpen = (title) => {\r\n    this.setState({\r\n      title: title,\r\n      content: \"\",\r\n      dialogState: \"warning\",\r\n      open: true,\r\n    });\r\n  };\r\n\r\n  handleClose = (confirmed) => {\r\n    this.setState(\r\n      {\r\n        open: false,\r\n      },\r\n      this.setState({ title: \"\", content: \"\", responseFunction: null })\r\n    );\r\n    if (this.state.dialogState === \"confirm\" && this.state.responseFunction) {\r\n      this.state.responseFunction(confirmed);\r\n    }\r\n  };\r\n\r\n  downloadError = () => {\r\n    let filename = \"hsa_error_log.txt\";\r\n    let text = this.state.content;\r\n    let element = document.createElement(\"a\");\r\n    element.setAttribute(\r\n      \"href\",\r\n      \"data:text/plain;charset=utf-8,\" + encodeURIComponent(text)\r\n    );\r\n    element.setAttribute(\"download\", filename);\r\n\r\n    element.style.display = \"none\";\r\n    document.body.appendChild(element);\r\n\r\n    element.click();\r\n\r\n    document.body.removeChild(element);\r\n  };\r\n\r\n  render() {\r\n    const { dialogState, open, title, content } = this.state;\r\n    return (\r\n      open && (\r\n        <Dialog\r\n          open={open}\r\n          onClose={() => this.handleClose(false)}\r\n          aria-labelledby=\"responsive-dialog-title\"\r\n        >\r\n          {typeof title === \"object\" && title.length > 1 ? (\r\n            <DialogTitle>\r\n              {title.map((row, idx) => {\r\n                return <div key={idx}>{row}</div>;\r\n              })}\r\n            </DialogTitle>\r\n          ) : (\r\n            <DialogTitle>{title}</DialogTitle>\r\n          )}\r\n\r\n          <React.Fragment>\r\n            {(dialogState === \"confirm\" || dialogState === \"error\") && (\r\n              <DialogContent style={{ overflow: \"visible\" }}>\r\n                {dialogState === \"confirm\" && content !== \"\" && (\r\n                  <DialogContentText>{content}</DialogContentText>\r\n                )}\r\n                {dialogState === \"error\" && (\r\n                  <div style={{ width: 532 }}>\r\n                    <TextField\r\n                      label=\"Error Message\"\r\n                      name=\"Textfield\"\r\n                      multiline\r\n                      fullWidth\r\n                      value={content ? content : \"\"}\r\n                      variant=\"outlined\"\r\n                    />\r\n                  </div>\r\n                )}\r\n              </DialogContent>\r\n            )}\r\n          </React.Fragment>\r\n\r\n          {/* Buttons */}\r\n          <DialogActions>\r\n            {dialogState === \"confirm\" && (\r\n              <Button\r\n                autoFocus\r\n                onClick={() => this.handleClose(false)}\r\n                color=\"primary\"\r\n              >\r\n                Cancel\r\n              </Button>\r\n            )}\r\n            {dialogState === \"error\" && (\r\n              <Button onClick={() => this.downloadError()} color=\"primary\">\r\n                Download Log File\r\n              </Button>\r\n            )}\r\n            <Button\r\n              onClick={() => this.handleClose(true)}\r\n              color=\"primary\"\r\n              autoFocus\r\n            >\r\n              OK\r\n            </Button>\r\n          </DialogActions>\r\n        </Dialog>\r\n      )\r\n    );\r\n  }\r\n}\r\n\r\nexport default CustomDialog;\r\n","// Adds ctx.getTransform() - returns an SVGMatrix\r\n// Adds ctx.transformedPoint(x,y) - returns an SVGPoint\r\nexport function trackTransforms(ctx) {\r\n  var svg = document.createElementNS(\"http://www.w3.org/2000/svg\", \"svg\");\r\n  var xform = svg.createSVGMatrix();\r\n  ctx.getTransform = function () {\r\n    return xform;\r\n  };\r\n\r\n  var savedTransforms = [];\r\n  var save = ctx.save;\r\n  ctx.save = function () {\r\n    savedTransforms.push(xform.translate(0, 0));\r\n    return save.call(ctx);\r\n  };\r\n\r\n  var restore = ctx.restore;\r\n  ctx.restore = function () {\r\n    xform = savedTransforms.pop();\r\n    return restore.call(ctx);\r\n  };\r\n\r\n  var scale = ctx.scale;\r\n  ctx.scale = function (sx, sy) {\r\n    xform = xform.scaleNonUniform(sx, sy);\r\n    return scale.call(ctx, sx, sy);\r\n  };\r\n\r\n  var rotate = ctx.rotate;\r\n  ctx.rotate = function (radians) {\r\n    xform = xform.rotate((radians * 180) / Math.PI);\r\n    return rotate.call(ctx, radians);\r\n  };\r\n\r\n  var translate = ctx.translate;\r\n  ctx.translate = function (dx, dy) {\r\n    xform = xform.translate(dx, dy);\r\n    return translate.call(ctx, dx, dy);\r\n  };\r\n\r\n  var transform = ctx.transform;\r\n  ctx.transform = function (a, b, c, d, e, f) {\r\n    var m2 = svg.createSVGMatrix();\r\n    m2.a = a;\r\n    m2.b = b;\r\n    m2.c = c;\r\n    m2.d = d;\r\n    m2.e = e;\r\n    m2.f = f;\r\n    xform = xform.multiply(m2);\r\n    return transform.call(ctx, a, b, c, d, e, f);\r\n  };\r\n\r\n  var setTransform = ctx.setTransform;\r\n  ctx.setTransform = function (a, b, c, d, e, f) {\r\n    xform.a = a;\r\n    xform.b = b;\r\n    xform.c = c;\r\n    xform.d = d;\r\n    xform.e = e;\r\n    xform.f = f;\r\n    return setTransform.call(ctx, a, b, c, d, e, f);\r\n  };\r\n\r\n  var pt = svg.createSVGPoint();\r\n  ctx.transformedPoint = function (x, y) {\r\n    pt.x = x;\r\n    pt.y = y;\r\n    try {\r\n      return pt.matrixTransform(xform.inverse());\r\n    } catch (e) {\r\n      return pt;\r\n    }\r\n  };\r\n\r\n  pt = svg.createSVGPoint();\r\n  ctx.backTransformedPoint = function (x, y) {\r\n    pt.x = x;\r\n    pt.y = y;\r\n    return pt.matrixTransform(xform);\r\n  };\r\n}\r\n\r\n// calculate the log to a specific base\r\nexport function getBaseLog(x, y) {\r\n  return Math.log(y) / Math.log(x);\r\n}\r\n","import Backend from \"../../common/utils/Backend\";\r\nimport { inv, multiply, transpose } from \"mathjs\";\r\n\r\nexport function configureImage(img, channel) {\r\n  if (!img || img.width === 0) {\r\n    return null;\r\n  }\r\n\r\n  let offScrCan = document.createElement(\"canvas\");\r\n  offScrCan.width = img.width;\r\n  offScrCan.height = img.height;\r\n\r\n  let ctx1 = offScrCan.getContext(\"2d\");\r\n\r\n  ctx1.drawImage(img, 0, 0, img.width, img.height);\r\n\r\n  // do histogram manipulation\r\n  if (img.width === 0) return null;\r\n  let imgData = ctx1.getImageData(0, 0, img.width, img.height);\r\n  let step = 4; // rgba\r\n  let min = channel.min;\r\n  let max = channel.max;\r\n  let gamma = channel.gamma;\r\n\r\n  for (let i = 0; i < imgData.data.length; i += step) {\r\n    // alter r,g and b\r\n    for (let j = 0; j < 3; j++) {\r\n      let val = imgData.data[i + j];\r\n      val = (Math.min(Math.max(val - min, 0), max) * 255) / (max - min);\r\n      imgData.data[i + j] = 255 * (val / 255) ** (1 / gamma);\r\n    }\r\n  }\r\n  ctx1.putImageData(imgData, 0, 0);\r\n  return offScrCan;\r\n}\r\n\r\nvar __assign =\r\n  (this && this.__assign) ||\r\n  function () {\r\n    __assign =\r\n      Object.assign ||\r\n      function (t) {\r\n        for (var s, i = 1, n = arguments.length; i < n; i++) {\r\n          s = arguments[i];\r\n          for (var p in s)\r\n            if (Object.prototype.hasOwnProperty.call(s, p)) t[p] = s[p];\r\n        }\r\n        return t;\r\n      };\r\n    return __assign.apply(this, arguments);\r\n  };\r\n//function is necessary for procrustes calculation\r\nfunction SVD(a, options) {\r\n  let _a = __assign({ u: true, v: true, eps: Math.pow(2, -52) }, options),\r\n    withu = _a.u,\r\n    withv = _a.v,\r\n    eps = _a.eps;\r\n  var tol = 1e-64 / eps;\r\n  // throw error if a is not defined\r\n  if (!a) {\r\n    throw new TypeError(\"Matrix a is not defined\");\r\n  }\r\n  // Householder's reduction to bidiagonal form\r\n  var n = a[0].length;\r\n  var m = a.length;\r\n  if (m < n) {\r\n    throw new TypeError(\"Invalid matrix: m < n\");\r\n  }\r\n  var l1, c, f, h, s, y, z;\r\n  var l = 0,\r\n    g = 0,\r\n    x = 0;\r\n  var e = [];\r\n  var u = [];\r\n  var v = [];\r\n  // Initialize u\r\n  for (let i = 0; i < m; i++) {\r\n    u[i] = new Array(n).fill(0);\r\n  }\r\n  // Initialize v\r\n  for (let i = 0; i < n; i++) {\r\n    v[i] = new Array(n).fill(0);\r\n  }\r\n  // Initialize q\r\n  var q = new Array(n).fill(0);\r\n  // Copy array a in u\r\n  for (let i = 0; i < m; i++) {\r\n    for (let j = 0; j < n; j++) {\r\n      u[i][j] = a[i][j];\r\n    }\r\n  }\r\n  for (let i = 0; i < n; i++) {\r\n    e[i] = g;\r\n    s = 0;\r\n    l = i + 1;\r\n    for (let j = i; j < m; j++) {\r\n      s += Math.pow(u[j][i], 2);\r\n    }\r\n    if (s < tol) {\r\n      g = 0;\r\n    } else {\r\n      f = u[i][i];\r\n      g = f < 0 ? Math.sqrt(s) : -Math.sqrt(s);\r\n      h = f * g - s;\r\n      u[i][i] = f - g;\r\n      for (let j = l; j < n; j++) {\r\n        s = 0;\r\n        for (let k = i; k < m; k++) {\r\n          s += u[k][i] * u[k][j];\r\n        }\r\n        f = s / h;\r\n        for (let k = i; k < m; k++) {\r\n          u[k][j] = u[k][j] + f * u[k][i];\r\n        }\r\n      }\r\n    }\r\n    q[i] = g;\r\n    s = 0;\r\n    for (let j = l; j < n; j++) {\r\n      s += Math.pow(u[i][j], 2);\r\n    }\r\n    if (s < tol) {\r\n      g = 0;\r\n    } else {\r\n      f = u[i][i + 1];\r\n      g = f < 0 ? Math.sqrt(s) : -Math.sqrt(s);\r\n      h = f * g - s;\r\n      u[i][i + 1] = f - g;\r\n      for (let j = l; j < n; j++) {\r\n        e[j] = u[i][j] / h;\r\n      }\r\n      for (let j = l; j < m; j++) {\r\n        s = 0;\r\n        for (let k = l; k < n; k++) {\r\n          s += u[j][k] * u[i][k];\r\n        }\r\n        for (let k = l; k < n; k++) {\r\n          u[j][k] = u[j][k] + s * e[k];\r\n        }\r\n      }\r\n    }\r\n    y = Math.abs(q[i]) + Math.abs(e[i]);\r\n    if (y > x) {\r\n      x = y;\r\n    }\r\n  }\r\n  // Accumulation of right-hand transformations\r\n  if (withv) {\r\n    for (let i = n - 1; i >= 0; i--) {\r\n      if (g !== 0) {\r\n        h = u[i][i + 1] * g;\r\n        for (let j = l; j < n; j++) {\r\n          v[j][i] = u[i][j] / h;\r\n        }\r\n        for (let j = l; j < n; j++) {\r\n          s = 0;\r\n          for (let k = l; k < n; k++) {\r\n            s += u[i][k] * v[k][j];\r\n          }\r\n          for (let k = l; k < n; k++) {\r\n            v[k][j] = v[k][j] + s * v[k][i];\r\n          }\r\n        }\r\n      }\r\n      for (let j = l; j < n; j++) {\r\n        v[i][j] = 0;\r\n        v[j][i] = 0;\r\n      }\r\n      v[i][i] = 1;\r\n      g = e[i];\r\n      l = i;\r\n    }\r\n  }\r\n  // Accumulation of left-hand transformations\r\n  if (withu) {\r\n    for (let i = n - 1; i >= 0; i--) {\r\n      l = i + 1;\r\n      g = q[i];\r\n      for (let j = l; j < n; j++) {\r\n        u[i][j] = 0;\r\n      }\r\n      if (g !== 0) {\r\n        h = u[i][i] * g;\r\n        for (let j = l; j < n; j++) {\r\n          s = 0;\r\n          for (let k = l; k < m; k++) {\r\n            s += u[k][i] * u[k][j];\r\n          }\r\n          f = s / h;\r\n          for (let k = i; k < m; k++) {\r\n            u[k][j] = u[k][j] + f * u[k][i];\r\n          }\r\n        }\r\n        for (let j = i; j < m; j++) {\r\n          u[j][i] = u[j][i] / g;\r\n        }\r\n      } else {\r\n        for (let j = i; j < m; j++) {\r\n          u[j][i] = 0;\r\n        }\r\n      }\r\n      u[i][i] = u[i][i] + 1;\r\n    }\r\n  }\r\n  // Diagonalization of the bidiagonal form\r\n  eps = eps * x;\r\n  var testConvergence;\r\n  for (let k = n - 1; k >= 0; k--) {\r\n    for (let iteration = 0; iteration < 50; iteration++) {\r\n      // test-f-splitting\r\n      testConvergence = false;\r\n      for (l = k; l >= 0; l--) {\r\n        if (Math.abs(e[l]) <= eps) {\r\n          testConvergence = true;\r\n          break;\r\n        }\r\n        if (Math.abs(q[l - 1]) <= eps) {\r\n          break;\r\n        }\r\n      }\r\n      if (!testConvergence) {\r\n        // cancellation of e[l] if l>0\r\n        c = 0;\r\n        s = 1;\r\n        l1 = l - 1;\r\n        for (let i = l; i < k + 1; i++) {\r\n          f = s * e[i];\r\n          e[i] = c * e[i];\r\n          if (Math.abs(f) <= eps) {\r\n            break; // goto test-f-convergence\r\n          }\r\n          g = q[i];\r\n          q[i] = Math.sqrt(f * f + g * g);\r\n          h = q[i];\r\n          c = g / h;\r\n          s = -f / h;\r\n          if (withu) {\r\n            for (let j = 0; j < m; j++) {\r\n              y = u[j][l1];\r\n              z = u[j][i];\r\n              u[j][l1] = y * c + z * s;\r\n              u[j][i] = -y * s + z * c;\r\n            }\r\n          }\r\n        }\r\n      }\r\n      // test f convergence\r\n      z = q[k];\r\n      if (l === k) {\r\n        // convergence\r\n        if (z < 0) {\r\n          // q[k] is made non-negative\r\n          q[k] = -z;\r\n          if (withv) {\r\n            for (var j = 0; j < n; j++) {\r\n              v[j][k] = -v[j][k];\r\n            }\r\n          }\r\n        }\r\n        break; // break out of iteration loop and move on to next k value\r\n      }\r\n      // Shift from bottom 2x2 minor\r\n      x = q[l];\r\n      y = q[k - 1];\r\n      g = e[k - 1];\r\n      h = e[k];\r\n      f = ((y - z) * (y + z) + (g - h) * (g + h)) / (2 * h * y);\r\n      g = Math.sqrt(f * f + 1);\r\n      f = ((x - z) * (x + z) + h * (y / (f < 0 ? f - g : f + g) - h)) / x;\r\n      // Next QR transformation\r\n      c = 1;\r\n      s = 1;\r\n      for (let i = l + 1; i < k + 1; i++) {\r\n        g = e[i];\r\n        y = q[i];\r\n        h = s * g;\r\n        g = c * g;\r\n        z = Math.sqrt(f * f + h * h);\r\n        e[i - 1] = z;\r\n        c = f / z;\r\n        s = h / z;\r\n        f = x * c + g * s;\r\n        g = -x * s + g * c;\r\n        h = y * s;\r\n        y = y * c;\r\n        if (withv) {\r\n          for (let j = 0; j < n; j++) {\r\n            x = v[j][i - 1];\r\n            z = v[j][i];\r\n            v[j][i - 1] = x * c + z * s;\r\n            v[j][i] = -x * s + z * c;\r\n          }\r\n        }\r\n        z = Math.sqrt(f * f + h * h);\r\n        q[i - 1] = z;\r\n        c = f / z;\r\n        s = h / z;\r\n        f = c * g + s * y;\r\n        x = -s * g + c * y;\r\n        if (withu) {\r\n          for (let j = 0; j < m; j++) {\r\n            y = u[j][i - 1];\r\n            z = u[j][i];\r\n            u[j][i - 1] = y * c + z * s;\r\n            u[j][i] = -y * s + z * c;\r\n          }\r\n        }\r\n      }\r\n      e[l] = 0;\r\n      e[k] = f;\r\n      q[k] = x;\r\n    }\r\n  }\r\n  // Number below eps should be zero\r\n  for (let i = 0; i < n; i++) {\r\n    if (q[i] < eps) q[i] = 0;\r\n  }\r\n  return { u: u, q: q, v: v };\r\n}\r\n\r\nfunction calculateAffineTransformation(opointBase, opointShift, bfact, tfact) {\r\n  //copy arrays\r\n  let pointBase = JSON.parse(JSON.stringify(opointBase));\r\n  let pointShift = JSON.parse(JSON.stringify(opointShift));\r\n\r\n  for (let i = 0; i < pointBase.length; i++) {\r\n    pointShift[i][0] = pointShift[i][0] * tfact;\r\n    pointShift[i][1] = pointShift[i][1] * tfact;\r\n    pointBase[i][0] = pointBase[i][0] * bfact;\r\n    pointBase[i][1] = pointBase[i][1] * bfact;\r\n  }\r\n\r\n  //procrustes Calculation\r\n  let n = pointBase.length;\r\n  let ny = pointShift.length;\r\n\r\n  let muXSumX = 0;\r\n  let muXSumY = 0;\r\n  for (let i = 0; i < n; i++) {\r\n    muXSumX += pointBase[i][0];\r\n    muXSumY += pointBase[i][1];\r\n  }\r\n  let muYSumX = 0;\r\n  let muYSumY = 0;\r\n  for (let i = 0; i < ny; i++) {\r\n    muYSumX += pointShift[i][0];\r\n    muYSumY += pointShift[i][1];\r\n  }\r\n  let muX = [muXSumX / n, muXSumY / n];\r\n  let muY = [muYSumX / ny, muYSumY / ny];\r\n\r\n  let x0 = [];\r\n  let y0 = [];\r\n  for (let i = 0; i < n; i++) {\r\n    x0.push([pointBase[i][0] - muX[0], pointBase[i][1] - muX[1]]);\r\n  }\r\n  for (let i = 0; i < ny; i++) {\r\n    y0.push([pointShift[i][0] - muY[0], pointShift[i][1] - muY[1]]);\r\n  }\r\n\r\n  let muXSumXQ = 0;\r\n  let muXSumYQ = 0;\r\n  for (let i = 0; i < n; i++) {\r\n    muXSumXQ += x0[i][0] ** 2;\r\n    muXSumYQ += x0[i][1] ** 2;\r\n  }\r\n  let muYSumXQ = 0;\r\n  let muYSumYQ = 0;\r\n  for (let i = 0; i < ny; i++) {\r\n    muYSumXQ += y0[i][0] ** 2;\r\n    muYSumYQ += y0[i][1] ** 2;\r\n  }\r\n  let ssX = muXSumXQ + muXSumYQ;\r\n  let ssY = muYSumXQ + muYSumYQ;\r\n\r\n  let normX = Math.sqrt(ssX);\r\n  let normY = Math.sqrt(ssY);\r\n\r\n  let newX0 = [];\r\n  let newY0 = [];\r\n  for (let i = 0; i < n; i++) {\r\n    newX0.push([x0[i][0] / normX, x0[i][1] / normX]);\r\n  }\r\n  for (let i = 0; i < ny; i++) {\r\n    newY0.push([y0[i][0] / normY, y0[i][1] / normY]);\r\n  }\r\n\r\n  let a = multiply(transpose(newX0), newY0);\r\n  let { u, q, v } = SVD(a);\r\n\r\n  let U = JSON.parse(JSON.stringify(u));\r\n  U[0][0] = u[0][1];\r\n  U[0][1] = u[0][0];\r\n  U[1][0] = u[1][1];\r\n  U[1][1] = u[1][0];\r\n  let Vt = JSON.parse(JSON.stringify(v));\r\n  Vt[0][0] = v[0][1];\r\n  Vt[0][1] = v[0][0];\r\n  Vt[1][0] = v[1][1];\r\n  Vt[1][1] = v[1][0];\r\n  let s = JSON.parse(JSON.stringify(q));\r\n  s[0] = q[1];\r\n  s[1] = q[0];\r\n\r\n  let V = transpose(Vt);\r\n\r\n  let T = multiply(V, transpose(U));\r\n  // reflection always at best\r\n  // scaling always true\r\n  // view python code for details\r\n  let traceTA = 0;\r\n  for (let i = 0; i < s.length; i++) {\r\n    traceTA += s[i];\r\n  }\r\n  let b = (traceTA * normX) / normY;\r\n  let Z = multiply(newY0, T);\r\n\r\n  for (let i = 0; i < Z.length; i++) {\r\n    Z[i][0] = normX * traceTA * Z[i][0] + muX[0];\r\n    Z[i][1] = normX * traceTA * Z[i][1] + muX[1];\r\n  }\r\n  let c = multiply(muY, T);\r\n  c[0] = muX[0] - c[0] * b;\r\n  c[1] = muX[1] - c[1] * b;\r\n  let R = [\r\n    [T[0][0], T[0][1], 0],\r\n    [T[1][0], T[1][1], 0],\r\n    [0, 0, 1],\r\n  ];\r\n  let S = [\r\n    [b, 0, 0],\r\n    [0, b, 0],\r\n    [0, 0, 1],\r\n  ];\r\n  let t = [\r\n    [1, 0, c[0]],\r\n    [0, 1, c[1]],\r\n    [0, 0, 1],\r\n  ];\r\n  let Matrix = transpose(multiply(multiply(R, S), transpose(t)));\r\n  return Matrix;\r\n}\r\n\r\nfunction calcOnloading(params, img) {\r\n  img.onload = () => {\r\n    params.counter += 1;\r\n    params.imgs.push(img);\r\n    if (params.counter === 2) {\r\n      let str = params.imgs[0].currentSrc;\r\n      //let baseHeight = null;\r\n      let targetHeight = null;\r\n      if (str.includes(params.baseId)) {\r\n        //baseHeight = params.imgs[0].height;\r\n        targetHeight = params.imgs[1].height;\r\n      } else {\r\n        return;\r\n      }\r\n\r\n      let bfact = 1; // baseHeight / params.baseOme.sizeY;\r\n      let tfact = 1;\r\n      let translateScale = targetHeight / params.ome.sizeY; //baseHeight / params.baseOme.sizeY;\r\n\r\n      let m = calculateAffineTransformation(\r\n        params.pointBase,\r\n        params.pointShift,\r\n        bfact,\r\n        tfact\r\n      );\r\n      let hMat = [\r\n        m[0][0],\r\n        m[0][1],\r\n        m[0][2],\r\n        m[1][0],\r\n        m[1][1],\r\n        m[1][2],\r\n        m[2][0],\r\n        m[2][1],\r\n        m[2][2],\r\n      ];\r\n      params.callback(hMat, translateScale);\r\n    }\r\n  };\r\n}\r\n\r\nexport function calculateTransformationMatrix(\r\n  pointBase,\r\n  pointShift,\r\n  ome,\r\n  baseId,\r\n  targetId,\r\n  baseOme,\r\n  callback\r\n) {\r\n  let ids = [baseId, targetId];\r\n  let counter = 0;\r\n  let imgs = [];\r\n  let params = {\r\n    counter,\r\n    imgs,\r\n    pointBase,\r\n    pointShift,\r\n    ome,\r\n    baseOme,\r\n    callback,\r\n    baseId,\r\n  };\r\n  for (let i = 0; i < ids.length; i++) {\r\n    let img = new Image();\r\n    img.src = Backend.renderRegion({\r\n      id: ids[i],\r\n      page: 0,\r\n      lv: 0,\r\n      x: 0,\r\n      y: 0,\r\n    });\r\n    calcOnloading(params, img);\r\n  }\r\n}\r\n\r\nfunction onloading(p, i, j, visImg) {\r\n  visImg.onload = () => {\r\n    p.counter += 1;\r\n    p.imgs.push(visImg);\r\n    p.pos.push([j - p.xStart, i - p.yStart]);\r\n    if (p.counter === p.tilesToLoad) {\r\n      p.callback(p.imgs, p.pos);\r\n    }\r\n  };\r\n}\r\n\r\nfunction tileLoader(params) {\r\n  for (let i = params.yStart; i <= params.yEnd; i++) {\r\n    for (let j = params.xStart; j <= params.xEnd; j++) {\r\n      let visImg = new Image();\r\n      visImg.src = Backend.renderRegion({\r\n        id: params.fileId,\r\n        page: params.page,\r\n        lv: params.lv,\r\n        x: j,\r\n        y: i,\r\n      });\r\n      onloading(params, i, j, visImg);\r\n    }\r\n  }\r\n}\r\n\r\nfunction transformPoint(x, y, m) {\r\n  let a = m[0][0] * x + m[0][1] * y + m[0][2];\r\n  let b = m[1][0] * x + m[1][1] * y + m[1][2];\r\n  let c = m[2][0] * x + m[2][1] * y + m[2][2];\r\n  if (c !== 1) {\r\n    console.log(\"transformation error\");\r\n  }\r\n  let resultX = a / c;\r\n  let resultY = b / c;\r\n  return [resultX, resultY];\r\n}\r\n\r\nexport function tileRegistration(\r\n  img,\r\n  tileId,\r\n  hMat,\r\n  fact,\r\n  channel,\r\n  callbackPushImage\r\n) {\r\n  let cv = window.cv;\r\n  let splited = tileId.split(\",\");\r\n  let page = parseInt(splited[0]);\r\n  let lv = parseInt(splited[1]);\r\n  let x = parseInt(splited[2]);\r\n  let y = parseInt(splited[3]);\r\n  let fileId = splited[4];\r\n  let maxTile = Math.pow(2, lv);\r\n  //let strin = \"-\" + page + \",\" + lv + \",\" + x + \",\" + y + \"-\";\r\n  let m = [\r\n    [hMat[0], hMat[1], hMat[2] * fact],\r\n    [hMat[3], hMat[4], hMat[5] * fact],\r\n    [hMat[6], hMat[7], hMat[8]],\r\n  ];\r\n\r\n  let iM = inv(m);\r\n  let s = [\r\n    [maxTile, 0, 0],\r\n    [0, maxTile, 0],\r\n    [0, 0, 1],\r\n  ];\r\n  m = multiply(multiply(s, m), inv(s));\r\n  iM = inv(m);\r\n\r\n  //get tile coordinates\r\n  let tileWidth = img.width;\r\n  let tileHeight = img.height;\r\n  let xPosition = (x + 1) * tileWidth;\r\n  let yPosition = (y + 1) * tileHeight;\r\n\r\n  let pointTL = [xPosition - tileWidth, yPosition - tileHeight];\r\n  let pointTR = [xPosition, yPosition - tileHeight];\r\n  let pointBL = [xPosition - tileWidth, yPosition];\r\n  let pointBR = [xPosition, yPosition];\r\n\r\n  //reverse transfrom the tile coordinates\r\n  let invPointTL = transformPoint(pointTL[0], pointTL[1], iM);\r\n  let invPointTR = transformPoint(pointTR[0], pointTR[1], iM);\r\n  let invPointBL = transformPoint(pointBL[0], pointBL[1], iM);\r\n  let invPointBR = transformPoint(pointBR[0], pointBR[1], iM);\r\n\r\n  //create rectangle around transformed coordinates\r\n  let minX = Math.min(\r\n    invPointTL[0],\r\n    invPointTR[0],\r\n    invPointBL[0],\r\n    invPointBR[0]\r\n  );\r\n  let minY = Math.min(\r\n    invPointTL[1],\r\n    invPointTR[1],\r\n    invPointBL[1],\r\n    invPointBR[1]\r\n  );\r\n  let maxX = Math.max(\r\n    invPointTL[0],\r\n    invPointTR[0],\r\n    invPointBL[0],\r\n    invPointBR[0]\r\n  );\r\n  let maxY = Math.max(\r\n    invPointTL[1],\r\n    invPointTR[1],\r\n    invPointBL[1],\r\n    invPointBR[1]\r\n  );\r\n\r\n  let rectPointTL = [minX, minY];\r\n  let rectPointBR = [maxX, maxY];\r\n  let rectWidth = Math.abs(maxX - minX);\r\n  let rectHeight = Math.abs(maxY - minY);\r\n\r\n  //create mats and use them to calc needed transformation matrix\r\n  let OriginRectPointTL = [\r\n    invPointTL[0] - rectPointTL[0],\r\n    invPointTL[1] - rectPointTL[1],\r\n  ];\r\n  let OriginRectPointTR = [\r\n    invPointTR[0] - rectPointTL[0],\r\n    invPointTR[1] - rectPointTL[1],\r\n  ];\r\n  let OriginRectPointBL = [\r\n    invPointBL[0] - rectPointTL[0],\r\n    invPointBL[1] - rectPointTL[1],\r\n  ];\r\n  let OriginRectPointBR = [\r\n    invPointBR[0] - rectPointTL[0],\r\n    invPointBR[1] - rectPointTL[1],\r\n  ];\r\n\r\n  let matSource = [\r\n    OriginRectPointTL[0],\r\n    OriginRectPointTL[1],\r\n    OriginRectPointTR[0],\r\n    OriginRectPointTR[1],\r\n    OriginRectPointBL[0],\r\n    OriginRectPointBL[1],\r\n    OriginRectPointBR[0],\r\n    OriginRectPointBR[1],\r\n  ];\r\n\r\n  matSource = cv.matFromArray(4, 1, cv.CV_32FC2, matSource);\r\n  let matTarget = [0, 0, tileWidth, 0, 0, tileHeight, tileWidth, tileHeight];\r\n  matTarget = cv.matFromArray(4, 1, cv.CV_32FC2, matTarget);\r\n  let newMat = cv.getPerspectiveTransform(matSource, matTarget);\r\n\r\n  //calculate wich tiles need to be loaded for complete information\r\n  let xStart = x;\r\n  let yStart = y;\r\n  let xEnd = x;\r\n  let yEnd = y;\r\n  if (rectPointTL[0] < pointTL[0] && pointTL[0] !== 0) {\r\n    let diff = pointTL[0] - rectPointTL[0];\r\n    diff = diff / tileWidth;\r\n    xStart = xStart - (Math.trunc(diff) + 1);\r\n    if (xStart < 0) xStart = 0;\r\n  }\r\n  if (rectPointBR[0] > pointBR[0]) {\r\n    let diff = rectPointBR[0] - pointBR[0];\r\n    diff = diff / tileWidth;\r\n    xEnd = xEnd + (Math.trunc(diff) + 1);\r\n    if (xEnd > maxTile - 1) xEnd = maxTile - 1;\r\n  }\r\n  if (rectPointTL[1] < pointTL[1] && pointTL[1] !== 0) {\r\n    let diff = pointTL[1] - rectPointTL[1];\r\n    diff = diff / tileHeight;\r\n    yStart = yStart - (Math.trunc(diff) + 1);\r\n    if (yStart < 0) yStart = 0;\r\n  }\r\n  if (rectPointBR[1] > pointBR[1]) {\r\n    let diff = rectPointBR[1] - pointBR[1];\r\n    diff = diff / tileHeight;\r\n    yEnd = yEnd + (Math.trunc(diff) + 1);\r\n    if (yEnd > maxTile - 1) yEnd = maxTile - 1;\r\n  }\r\n\r\n  //create offline canvas\r\n  let offScrCan = document.createElement(\"canvas\");\r\n  offScrCan.width = (xEnd - xStart + 1) * tileWidth;\r\n  offScrCan.height = (yEnd - yStart + 1) * tileHeight;\r\n  let offsetX = 0;\r\n  let offsetY = 0;\r\n\r\n  //adjust canvas size\r\n  if (rectPointTL[0] - pointTL[0] < 0) {\r\n    offScrCan.width = offScrCan.width + Math.abs(rectPointTL[0] - pointTL[0]);\r\n    offsetX = Math.abs(rectPointTL[0] - pointTL[0]);\r\n  }\r\n  if (rectPointBR[0] - pointBR[0] > (xEnd - xStart + 1) * tileWidth) {\r\n    offScrCan.width = offScrCan.width + Math.abs(rectPointBR[0] - pointBR[0]);\r\n  }\r\n  if (rectPointTL[1] - pointTL[1] < 0) {\r\n    offScrCan.height = offScrCan.height + Math.abs(rectPointTL[1] - pointTL[1]);\r\n    offsetY = Math.abs(rectPointTL[1] - pointTL[1]);\r\n  }\r\n  if (rectPointBR[1] - pointBR[1] > (yEnd - yStart + 1) * tileHeight) {\r\n    offScrCan.height = offScrCan.height + Math.abs(rectPointBR[1] - pointBR[1]);\r\n  }\r\n\r\n  let ctx = offScrCan.getContext(\"2d\");\r\n  //load the tiles wich will be later drawn into offline canvas\r\n  let imgs = [];\r\n  let pos = [];\r\n  let counter = 0;\r\n  let tilesToLoad = (yEnd - yStart + 1) * (xEnd - xStart + 1);\r\n  //tileloaderparams\r\n  let tileLoaderParams = {\r\n    yStart,\r\n    yEnd,\r\n    xStart,\r\n    xEnd,\r\n    fileId,\r\n    page,\r\n    lv,\r\n    tilesToLoad,\r\n    counter,\r\n    imgs,\r\n    pos,\r\n    callback: (imgs, pos) => {\r\n      if (imgs.length === pos.length) {\r\n        for (let i = 0; i < imgs.length; i++) {\r\n          let p = pos[i];\r\n          ctx.drawImage(\r\n            imgs[i],\r\n            p[0] * tileWidth + offsetX,\r\n            p[1] * tileHeight + offsetY,\r\n            tileWidth,\r\n            tileHeight\r\n          );\r\n        }\r\n      } else {\r\n        console.log(\"RETURN ERROR\");\r\n        return;\r\n      }\r\n      //create rectangle with information from offline canvas\r\n      let imgData = ctx.getImageData(\r\n        rectPointTL[0] - xStart * tileWidth + offsetX,\r\n        rectPointTL[1] - yStart * tileHeight + offsetY,\r\n        rectWidth,\r\n        rectHeight\r\n      );\r\n      //transform the rectangle\r\n      let src = cv.matFromImageData(imgData);\r\n      let dst = new cv.Mat();\r\n      let dsize = new cv.Size(tileWidth, tileHeight);\r\n      cv.warpPerspective(\r\n        src,\r\n        dst,\r\n        newMat,\r\n        dsize,\r\n        cv.INTER_NEAREST,\r\n        cv.BORDER_REPLICATE\r\n      );\r\n\r\n      let newImgData = new ImageData(\r\n        new Uint8ClampedArray(dst.data),\r\n        dst.cols,\r\n        dst.rows\r\n      );\r\n      //create new canvas in tile size and draw transformation result into it\r\n      let offTileCan = document.createElement(\"canvas\");\r\n      offTileCan.width = tileWidth;\r\n      offTileCan.height = tileHeight;\r\n      let ctxTile = offTileCan.getContext(\"2d\");\r\n      ctxTile.putImageData(newImgData, 0, 0);\r\n      //console.log(\"REGISTERED\", page, lv, x, y, fileId);\r\n      // ctxTile.font = \"100px Arial\";\r\n      // ctxTile.fillStyle = \"red\";\r\n      // ctxTile.textAlign = \"center\";\r\n      // ctxTile.fillText(\r\n      //   strin,\r\n      //   parseInt(tileWidth / 2),\r\n      //   parseInt(tileHeight / 2)\r\n      // );\r\n      offTileCan = configureImage(offTileCan, channel);\r\n\r\n      callbackPushImage(offTileCan);\r\n    },\r\n  };\r\n  tileLoader(tileLoaderParams);\r\n}\r\n\r\n// function autoRegistration(\r\n//   pointBase,\r\n//   pointShift,\r\n//   ome,\r\n//   fileId,\r\n//   activeFileId,\r\n//   splitIds,\r\n//   callback\r\n// ) {\r\n//   //fileIdBase, fileIdShift\r\n//   let cv = window.cv;\r\n//   let idBase = fileId;\r\n//   let idShift = fileId;\r\n//   if (fileId !== activeFileId) {\r\n//     idBase = activeFileId;\r\n//     idShift = fileId;\r\n//   } else {\r\n//     idBase = splitIds[0];\r\n//     idShift = splitIds[1];\r\n//   }\r\n\r\n//   // let ids = [fileIdBase, fileIdShift];\r\n//   let ids = [idBase, idShift];\r\n//   let counter = 0;\r\n//   let imgs = [];\r\n\r\n//   for (let i = 0; i < ids.length; i++) {\r\n//     let img = new Image();\r\n//     img.src = Backend.renderRegion({\r\n//       id: ids[i],\r\n//       page: 0,\r\n//       lv: 0,\r\n//       x: 0,\r\n//       y: 0,\r\n//     });\r\n//     img.onload = () => {\r\n//       counter += 1;\r\n//       imgs.push(img);\r\n//       if (counter === 2) {\r\n//         console.log(\"Images loaded\");\r\n//         // let factor = 2;\r\n//         // //alot of code just to get imgs as mats\r\n\r\n//         // //Image Base\r\n//         // let offScrnBase = document.createElement(\"canvas\");\r\n//         // offScrnBase.width = imgs[0].width;\r\n//         // offScrnBase.height = imgs[0].height;\r\n//         // let ctxBase = offScrnBase.getContext(\"2d\");\r\n//         // ctxBase.drawImage(imgs[0], 0, 0, offScrnBase.width, offScrnBase.height);\r\n//         // let imgDataBase = ctxBase.getImageData(\r\n//         //   0,\r\n//         //   0,\r\n//         //   offScrnBase.width,\r\n//         //   offScrnBase.height\r\n//         // );\r\n//         // let srcBase = cv.matFromImageData(imgDataBase);\r\n\r\n//         // //Image Shift\r\n//         // let offScrnShift = document.createElement(\"canvas\");\r\n//         // offScrnShift.width = imgs[1].width;\r\n//         // offScrnShift.height = imgs[1].height;\r\n\r\n//         // let ctxShift = offScrnShift.getContext(\"2d\");\r\n//         // ctxShift.drawImage(\r\n//         //   imgs[1],\r\n//         //   0,\r\n//         //   0,\r\n//         //   offScrnShift.width,\r\n//         //   offScrnShift.height\r\n//         // );\r\n//         // let imgDataShift = ctxShift.getImageData(\r\n//         //   0,\r\n//         //   0,\r\n//         //   offScrnShift.width,\r\n//         //   offScrnShift.height\r\n//         // );\r\n//         // let srcShift = cv.matFromImageData(imgDataShift);\r\n\r\n//         // //now we have imgs as mats\r\n\r\n//         // // convert 2 grayscale\r\n//         // let imgBaseGray = new cv.Mat();\r\n//         // let imgShiftGray = new cv.Mat();\r\n//         // cv.cvtColor(srcBase, imgBaseGray, cv.COLOR_BGRA2GRAY);\r\n//         // cv.cvtColor(srcShift, imgShiftGray, cv.COLOR_BGRA2GRAY);\r\n\r\n//         // //resize images\r\n//         // let shiftShrinkWidth = parseInt(offScrnShift.width / factor);\r\n//         // let shiftShrinkHeight = parseInt(offScrnShift.height / factor);\r\n//         // let imgBaseGrayShrink = new cv.Mat();\r\n//         // let imgShiftGrayShrink = new cv.Mat();\r\n//         // cv.resize(\r\n//         //   imgBaseGray,\r\n//         //   imgBaseGrayShrink,\r\n//         //   new cv.Size(\r\n//         //     parseInt(offScrnBase.width / factor),\r\n//         //     parseInt(offScrnBase.height / factor)\r\n//         //   ),\r\n//         //   cv.INTER_NEAREST\r\n//         // );\r\n//         // cv.resize(\r\n//         //   imgShiftGray,\r\n//         //   imgShiftGrayShrink,\r\n//         //   new cv.Size(shiftShrinkWidth, shiftShrinkHeight),\r\n//         //   cv.INTER_NEAREST\r\n//         // );\r\n\r\n//         // //Feature detection and matrix creation\r\n//         // var t0 = performance.now();\r\n\r\n//         // let kp1 = new cv.KeyPointVector();\r\n//         // let kp2 = new cv.KeyPointVector();\r\n//         // let dscrpt1 = new cv.Mat();\r\n//         // let dscrpt2 = new cv.Mat();\r\n//         // let orb = new cv.ORB(5000);\r\n\r\n//         // orb.detectAndCompute(imgBaseGrayShrink, new cv.Mat(), kp1, dscrpt1);\r\n//         // orb.detectAndCompute(imgShiftGrayShrink, new cv.Mat(), kp2, dscrpt2);\r\n\r\n//         // let goodMatches = new cv.DMatchVector();\r\n//         // let matcher = new cv.BFMatcher(cv.NORM_HAMMING, true);\r\n//         // let matches = new cv.DMatchVector();\r\n\r\n//         // matcher.match(dscrpt1, dscrpt2, matches);\r\n\r\n//         // //let qualityCounter = 0;\r\n//         // // for (let i = 0; i < matches.size(); i++) {\r\n//         // //   if (matches.get(i).distance < 45) {\r\n//         // //     qualityCounter += 1;\r\n//         // //     goodMatches.push_back(matches.get(i));\r\n//         // //   }\r\n//         // // }\r\n//         // // while (goodMatches.size() < matches.size() * 0.9) {\r\n//         // //   for (let i = 0; i < matches.size(); i++) {\r\n//         // //     if (matches.get(i).distance < cntr) {\r\n//         // //       goodMatches.push_back(matches.get(i));\r\n//         // //     }\r\n//         // //   }\r\n//         // //   cntr += 10;\r\n//         // // }\r\n//         // // top 90%\r\n//         // // let arr = [];\r\n//         // // for (let i = 0; i < matches.size(); i++) {\r\n//         // //   arr.push([i, matches.get(i).distance]);\r\n//         // // }\r\n//         // // arr.sort((a, b) => {\r\n//         // //   if (a[1] === b[1]) {\r\n//         // //     return 0;\r\n//         // //   } else {\r\n//         // //     return a[1] < b[1] ? -1 : 1;\r\n//         // //   }\r\n//         // // });\r\n\r\n//         // // for (let i = 0; i < matches.size() * 0.9; i++) {\r\n//         // //   goodMatches.push_back(matches.get(arr[i][0]));\r\n//         // // }\r\n\r\n//         // let points1 = [];\r\n//         // let points2 = [];\r\n//         // for (let i = 0; i < goodMatches.size(); i++) {\r\n//         //   points1.push(kp1.get(goodMatches.get(i).queryIdx).pt.x);\r\n//         //   points1.push(kp1.get(goodMatches.get(i).queryIdx).pt.y);\r\n//         //   points2.push(kp2.get(goodMatches.get(i).trainIdx).pt.x);\r\n//         //   points2.push(kp2.get(goodMatches.get(i).trainIdx).pt.y);\r\n//         // }\r\n//         // var mat1 = new cv.Mat(points1.length, 1, cv.CV_32FC2);\r\n//         // mat1.data32F.set(points1);\r\n//         // var mat2 = new cv.Mat(points2.length, 1, cv.CV_32FC2);\r\n//         // mat2.data32F.set(points2);\r\n\r\n//         // let h = cv.findHomography(mat2, mat1, cv.RANSAC);\r\n\r\n//         // //get warped Image for comparison\r\n//         // let dst = new cv.Mat();\r\n//         // let dsize = new cv.Size(shiftShrinkWidth, shiftShrinkHeight);\r\n//         // cv.warpPerspective(srcShift, dst, h, dsize);\r\n\r\n//         // //check mif result is good\r\n//         // let kp1Check = new cv.KeyPointVector();\r\n//         // let kp2Check = new cv.KeyPointVector();\r\n//         // let dscrpt1Check = new cv.Mat();\r\n//         // let dscrpt2Check = new cv.Mat();\r\n//         // let orbCheck = new cv.ORB(5000);\r\n\r\n//         // orbCheck.detectAndCompute(\r\n//         //   imgBaseGrayShrink,\r\n//         //   new cv.Mat(),\r\n//         //   kp1Check,\r\n//         //   dscrpt1Check\r\n//         // );\r\n//         // orbCheck.detectAndCompute(dst, new cv.Mat(), kp2Check, dscrpt2Check);\r\n\r\n//         // //let goodMatchesCheck = new cv.DMatchVector();\r\n//         // let matcherCheck = new cv.BFMatcher(cv.NORM_HAMMING, true);\r\n//         // let matchesCheck = new cv.DMatchVector();\r\n\r\n//         // matcherCheck.match(dscrpt1Check, dscrpt2Check, matchesCheck);\r\n\r\n//         // // let qualityCounterCheck = 0;\r\n//         // // for (let i = 0; i < matchesCheck.size(); i++) {\r\n//         // //   if (matchesCheck.get(i).distance < 20) {\r\n//         // //     qualityCounterCheck += 1;\r\n//         // //   }\r\n//         // // }\r\n//         // if (matchesCheck.size() < matches.size() * 0.4) {\r\n//         //   console.log(\"probably failed\");\r\n//         // }\r\n\r\n//         // /*\r\n//         // warp\r\n//         //   diff = newImgData imgDataBase\r\n//         //   if diff > x\r\n//         //     do it again\r\n//         //     parameterset [0,1,2,3,4...]\r\n//         //     if still\r\n//         //       return \"automatic reg not suitable\"\r\n\r\n//         // */\r\n\r\n//         // var t1 = performance.now();\r\n//         // console.log(\"Exec Time \" + (t1 - t0) / 1000 + \" seconds.\");\r\n\r\n//         // let m = [\r\n//         //   [h.data64F[0], h.data64F[1], h.data64F[2]],\r\n//         //   [h.data64F[3], h.data64F[4], h.data64F[5]],\r\n//         //   [h.data64F[6], h.data64F[7], h.data64F[8]],\r\n//         // ];\r\n//         // let s = [\r\n//         //   [factor, 0, 0],\r\n//         //   [0, factor, 0],\r\n//         //   [0, 0, 1],\r\n//         // ];\r\n//         // m = multiply(multiply(s, m), inv(s));\r\n//         let m = calculateAffineTransformation(pointBase, pointShift, ome);\r\n//         let hMat = [\r\n//           m[0][0],\r\n//           m[0][1],\r\n//           m[0][2],\r\n//           m[1][0],\r\n//           m[1][1],\r\n//           m[1][2],\r\n//           m[2][0],\r\n//           m[2][1],\r\n//           m[2][2],\r\n//         ];\r\n//         callback(hMat);\r\n//       }\r\n//     };\r\n//   }\r\n// }\r\n\r\nexport function colorInImage(img, channel) {\r\n  if (!img || img.width === 0) {\r\n    return null;\r\n  }\r\n\r\n  let offScrCan = document.createElement(\"canvas\");\r\n  offScrCan.width = img.width;\r\n  offScrCan.height = img.height;\r\n\r\n  let ctx1 = offScrCan.getContext(\"2d\");\r\n\r\n  ctx1.drawImage(img, 0, 0, img.width, img.height);\r\n\r\n  // do histogram manipulation\r\n  if (img.width === 0) return null;\r\n  let imgData = ctx1.getImageData(0, 0, img.width, img.height);\r\n  let step = 4; // rgba\r\n  let min = channel.min;\r\n  let max = channel.max;\r\n  let gamma = channel.gamma;\r\n  const maxPixelValue = 255;\r\n  let rgb = false;\r\n\r\n  //let rgb = true;\r\n  for (let i = 0, n = imgData.data.length; i < n; i += step) {\r\n    let val = imgData.data[i];\r\n    // let val = imgData.data[i + (step - 1)];\r\n    // if (val < maxPixelValue) rgb = false;\r\n\r\n    val = (Math.min(Math.max(val - min, 0), max) * maxPixelValue) / (max - min);\r\n    imgData.data[i + (step - 1)] =\r\n      maxPixelValue * (val / maxPixelValue) ** (1 / gamma);\r\n  }\r\n\r\n  ctx1.putImageData(imgData, 0, 0);\r\n\r\n  if (channel.type !== \"brightfield\" && !rgb) {\r\n    // color in alpha channel\r\n    ctx1.globalCompositeOperation = \"source-in\";\r\n    ctx1.fillStyle = channel.color;\r\n    ctx1.fillRect(0, 0, img.width, img.height);\r\n  }\r\n  return offScrCan;\r\n}\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport classNames from \"classnames\";\r\n\r\nimport withStyles from \"@mui/styles/withStyles\";\r\nimport Draggable from \"react-draggable\";\r\n\r\nconst maxScaleWidth = 200;\r\nconst maxScaleBarWidth = maxScaleWidth * 1.5;\r\nconst scaleUnitLabels = [\"km\", \"m\", \"mm\", \"µm\", \"nm\", \"pm\", \"fm\", \"am\", \"zm\"];\r\nconst scaleUnits = [3, 1, -3, -6, -9, -12, -15, -18, -21];\r\n\r\nconst styles = {\r\n  root: {\r\n    width: maxScaleBarWidth,\r\n    height: 30,\r\n\r\n    position: \"absolute\",\r\n    bottom: 4,\r\n    right: 6,\r\n    color: \"#ffffff\",\r\n\r\n    textAlign: \"center\",\r\n    padding: 4,\r\n    cursor: \"grab\",\r\n  },\r\n};\r\n\r\n/**\r\n * computing data to let renderer render the scalebar as a canvas element, so it can be printed with screenshot tool\r\n */\r\nclass ScaleBar extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n    this.state = {\r\n      grabbing: false,\r\n      x: 0,\r\n      y: 0,\r\n      newWidth: 0,\r\n    };\r\n  }\r\n\r\n  componentDidUpdate() {\r\n    const { ome, zoom } = this.props;\r\n    let scalebarMeters = ome.physicalSizeX * (maxScaleWidth / zoom);\r\n\r\n    // hide if no scale information is given\r\n    if (!ome.physicalSizeX) return null;\r\n\r\n    let exponent = parseFloat(scalebarMeters.toExponential().split(\"e\")[1]);\r\n\r\n    // find best fitting exponennt\r\n    let unitExponent = 1;\r\n    let unitExponentIndex = 1;\r\n    for (\r\n      unitExponentIndex = 0;\r\n      unitExponentIndex < scaleUnits.length;\r\n      unitExponentIndex++\r\n    ) {\r\n      if (scaleUnits[unitExponentIndex] <= exponent) {\r\n        unitExponent = scaleUnits[unitExponentIndex];\r\n        break;\r\n      }\r\n    }\r\n\r\n    let mantissa = scalebarMeters / Math.pow(10, unitExponent);\r\n\r\n    let roundedMantissa = mantissa;\r\n    if (mantissa < 1.5) {\r\n      roundedMantissa = 1;\r\n    } else if (mantissa < 3.5) {\r\n      roundedMantissa = 2;\r\n    } else if (mantissa < 7.5) {\r\n      roundedMantissa = 5;\r\n    } else if (mantissa < 15) {\r\n      roundedMantissa = 10;\r\n    } else if (mantissa < 35) {\r\n      roundedMantissa = 20;\r\n    } else if (mantissa < 75) {\r\n      roundedMantissa = 50;\r\n    } else if (mantissa < 150) {\r\n      roundedMantissa = 100;\r\n    } else if (mantissa < 350) {\r\n      roundedMantissa = 200;\r\n    } else if (mantissa < 750) {\r\n      roundedMantissa = 500;\r\n    } else {\r\n      roundedMantissa = 1;\r\n      unitExponentIndex--;\r\n      unitExponent = scaleUnits[unitExponentIndex];\r\n      mantissa = scalebarMeters / Math.pow(10, unitExponent);\r\n    }\r\n\r\n    // round finer without skipped steps\r\n    // if (mantissa < 10) {\r\n    //   roundedMantissa = Math.floor(mantissa / 1) * 1;\r\n    // } else if (mantissa < 100) {\r\n    //   roundedMantissa = Math.floor(mantissa / 10) * 10;\r\n    // } else if (mantissa < 1000) {\r\n    //   roundedMantissa = Math.floor(mantissa / 100) * 100;\r\n    // }\r\n\r\n    let newWidth = (maxScaleWidth * roundedMantissa) / mantissa;\r\n\r\n    const fluorescence = ome.channels[0].type !== \"brightfield\";\r\n    //console.log(\"setting scaleBarData1\");\r\n    this.props.setScaleBarData({\r\n      x: this.state.x,\r\n      y: this.state.y,\r\n      width: newWidth,\r\n      label: roundedMantissa + \" \" + scaleUnitLabels[unitExponentIndex],\r\n      color: fluorescence ? \"#fff\" : \"#000\",\r\n      maxScaleWidth: maxScaleBarWidth,\r\n    });\r\n  }\r\n\r\n  render() {\r\n    const { classes, setScaleBarData } = this.props;\r\n    const { grabbing } = this.state;\r\n\r\n    return (\r\n      <Draggable\r\n        onStart={(e) => {\r\n          this.parentObj = e.target.offsetParent.getBoundingClientRect();\r\n          this.setState({ grabbing: true });\r\n        }}\r\n        onStop={() => this.setState({ grabbing: false })}\r\n        onDrag={(e) => {\r\n          let rect = e.target.getBoundingClientRect();\r\n          if (this.parentObj.right !== rect.right) {\r\n            this.setState({\r\n              x: rect.right - this.parentObj.right,\r\n              y: rect.bottom - this.parentObj.bottom,\r\n            });\r\n          }\r\n        }}\r\n      >\r\n        <div\r\n          className={classNames(classes.root, grabbing && classes.grabbing)}\r\n          style={{\r\n            width: setScaleBarData.width,\r\n            right: \"calc(105px - \" + setScaleBarData.width / 2 + \"px)\",\r\n            pointerEvents: this.props.pointerEvents ? \"all\" : \"none\",\r\n          }}\r\n        ></div>\r\n      </Draggable>\r\n    );\r\n  }\r\n}\r\n\r\n// define the component's interface\r\nScaleBar.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  ome: PropTypes.object,\r\n  zoom: PropTypes.number,\r\n  pointerEvents: PropTypes.bool,\r\n  setScaleBarData: PropTypes.func,\r\n};\r\n\r\nexport default withStyles(styles)(ScaleBar);\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n// define the component's styling\r\nconst styles = () => ({\r\n  root: {\r\n    height: 300,\r\n    width: 50,\r\n    position: \"absolute\",\r\n    bottom: 50,\r\n    right: 5,\r\n    opacity: 0.8,\r\n  },\r\n  verticalBar: {\r\n    position: \"absolute\",\r\n    top: -15,\r\n    left: \"50%\",\r\n    marginLeft: -2,\r\n    width: 4,\r\n    height: \"100%\",\r\n    background: \"#0673C1\",\r\n  },\r\n  fab: {\r\n    position: \"absolute\",\r\n    marginTop: -15,\r\n    marginLeft: -15,\r\n    left: \"50%\",\r\n    width: 30,\r\n    height: 30,\r\n    background: \"white\",\r\n    color: \"#0673C1\",\r\n    border: \"2px solid #0673C1\",\r\n    borderRadius: \"50%\",\r\n    fontSize: \"12px\",\r\n    fontWeight: \"bold\",\r\n    lineHeight: \"25px\",\r\n    textAlign: \"center\",\r\n    cursor: \"pointer\",\r\n  },\r\n});\r\nconst marks = [\r\n  {\r\n    value: 100,\r\n    level: 40,\r\n  },\r\n  {\r\n    value: 75,\r\n    level: 20,\r\n  },\r\n  {\r\n    value: 50,\r\n    level: 10,\r\n  },\r\n  {\r\n    value: 30,\r\n    level: 4,\r\n  },\r\n  {\r\n    value: 15,\r\n    level: 2,\r\n  },\r\n  {\r\n    value: 0,\r\n    level: 1,\r\n  },\r\n];\r\n\r\nclass ZoomBar extends Component {\r\n  isSelected = (idx) => {\r\n    let zoom = this.props.zoom;\r\n    let result = marks.length - 1;\r\n    let max = 0;\r\n    for (let i = 0; i < marks.length; i++) {\r\n      let mark = marks[i];\r\n      if (mark.level <= zoom && mark.level >= max) {\r\n        max = mark.level;\r\n        result = i;\r\n      }\r\n    }\r\n    return result === idx;\r\n  };\r\n\r\n  render() {\r\n    const { classes, zoom, clickable } = this.props;\r\n    return (\r\n      <React.Fragment>\r\n        <div\r\n          className={classes.root}\r\n          style={{ pointerEvents: clickable ? \"all\" : \"none\", zIndex: 9999 }}\r\n        >\r\n          <div className={classes.verticalBar} />\r\n\r\n          {marks.map((mark, idx) => {\r\n            return (\r\n              <div key={idx} className={classes.markButton}>\r\n                <div\r\n                  style={{\r\n                    background: this.isSelected(idx) ? \"#0673C1\" : \"white\",\r\n                    color: this.isSelected(idx) ? \"white\" : \"#0673C1\",\r\n                    bottom: mark.value + \"%\",\r\n                  }}\r\n                  className={classes.fab}\r\n                  onClick={() => this.props.changeValue(mark.level)}\r\n                >\r\n                  {(this.isSelected(idx) ? Math.round(zoom) : mark.level) + \"x\"}\r\n                </div>\r\n              </div>\r\n            );\r\n          })}\r\n        </div>\r\n      </React.Fragment>\r\n    );\r\n  }\r\n}\r\n\r\n// define the component's interface\r\nZoomBar.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  zoom: PropTypes.number,\r\n  clickable: PropTypes.bool,\r\n  changeValue: PropTypes.func,\r\n};\r\n\r\nexport default withStyles(styles)(ZoomBar);\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport classNames from \"classnames\";\r\n\r\nimport withStyles from \"@mui/styles/withStyles\";\r\nimport withTheme from \"@mui/styles/withTheme\";\r\n\r\nimport { trackTransforms } from \"../utils/CanvasUtil\";\r\nimport DragIndicator from \"@mui/icons-material/DragIndicator\";\r\nimport Draggable from \"react-draggable\";\r\n\r\nimport { withTiles } from \"../contexts/TilesContext\";\r\n\r\nconst styles = {\r\n  root: {\r\n    position: \"absolute\",\r\n    left: 5,\r\n    height: 170,\r\n    width: 220,\r\n    border: \"2px solid rgb(85, 85, 85)\",\r\n    opacity: 0.8,\r\n  },\r\n  rootsidebar: {\r\n    height: 170,\r\n    width: 220,\r\n    border: \"2px solid rgb(85, 85, 85)\",\r\n    opacity: 0.8,\r\n  },\r\n  canvas: {\r\n    position: \"relative\",\r\n    width: \"100%\",\r\n    height: \"100%\",\r\n    backgroundColor: \"#000000\",\r\n  },\r\n  dragIndicator: {\r\n    color: \"#fff\",\r\n    position: \"absolute\",\r\n    top: 5,\r\n    right: 5,\r\n    cursor: \"grab\",\r\n  },\r\n  grabbing: {\r\n    cursor: \"grabbing\",\r\n  },\r\n};\r\n\r\nclass MiniMap extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n    if (props.componentRef) props.componentRef(this);\r\n\r\n    this.state = {\r\n      grabbing: false,\r\n    };\r\n  }\r\n\r\n  componentDidMount = () => {\r\n    this.initialized = false;\r\n    // add zoom with mouse wheel\r\n    this.canvas.addEventListener(\"mousewheel\", (e) => this.mousewheel(e), {\r\n      passive: false,\r\n    });\r\n\r\n    // get drawing context from canvas\r\n    this.ctx = this.canvas.getContext(\"2d\");\r\n\r\n    // extend context with some fancy additional transformation methods\r\n    trackTransforms(this.ctx);\r\n\r\n    // converts the relative size css information into an absolute size which we can access\r\n    this.width = this.canvas.width = this.canvas.offsetWidth;\r\n    this.height = this.canvas.height = this.canvas.offsetHeight;\r\n\r\n    // get bounds for correct minimap positionining\r\n    let bounds = this.root.getBoundingClientRect();\r\n    if (this.props.inSideBar) {\r\n      bounds.x = 0;\r\n      bounds.y = 0;\r\n    }\r\n    this.setState({\r\n      x: bounds.x,\r\n      y: bounds.y,\r\n    });\r\n  };\r\n\r\n  componentWillUnmount() {\r\n    this.canvas.removeEventListener(\"mousewheel\", (e) => this.mousewheel(e));\r\n  }\r\n\r\n  componentDidUpdate() {\r\n    // redraw image when the component updates\r\n    if (!this.initialized) {\r\n      setTimeout(() => {\r\n        this.draw();\r\n      }, 500);\r\n    } else if (this.initialized) {\r\n      this.draw();\r\n    }\r\n    this.draw();\r\n  }\r\n\r\n  // zoom out to show the whole image\r\n  zoomOut() {\r\n    // center image first\r\n    let pt = this.ctx.transformedPoint(\r\n      (this.canvas.width - this.vw) / 2,\r\n      (this.canvas.height - this.vh) / 2\r\n    );\r\n    this.ctx.translate(pt.x, pt.y);\r\n    // calc our transformation offset\r\n    pt = this.ctx.transformedPoint(\r\n      this.canvas.width / 2,\r\n      this.canvas.height / 2\r\n    );\r\n    // move to origin\r\n    this.ctx.translate(pt.x, pt.y);\r\n    // calc scale factor so we can fit the whole image on our screen\r\n    var factor = Math.min(\r\n      this.canvas.height / this.vh,\r\n      this.canvas.width / this.vw\r\n    );\r\n    // perform scaling\r\n    this.ctx.scale(factor, factor);\r\n    // restore our offset\r\n    this.ctx.translate(-pt.x, -pt.y);\r\n  }\r\n\r\n  draw() {\r\n    // nothing to draw if we haven't loaded our meta data yet\r\n    if (!this.props.ome || this.canvas === null) return;\r\n\r\n    // Clear the entire canvas\r\n    var p1 = this.ctx.transformedPoint(0, 0);\r\n    var p2 = this.ctx.transformedPoint(this.canvas.width, this.canvas.height);\r\n    this.ctx.clearRect(p1.x, p1.y, p2.x - p1.x, p2.y - p1.y);\r\n    this.ctx.save();\r\n    this.ctx.setTransform(1, 0, 0, 1, 0, 0);\r\n    this.ctx.clearRect(0, 0, this.canvas.width, this.canvas.height);\r\n    this.ctx.restore();\r\n\r\n    let lv = 0,\r\n      x = 0,\r\n      y = 0;\r\n    for (let c = 0; c < this.props.histogramConfig.channels.length; c++) {\r\n      let channel = this.props.histogramConfig.channels[c];\r\n      // skip disabled channels\r\n      if (!channel.enabled) continue;\r\n\r\n      let page = this.props.getPageForChannel(c)\r\n        ? this.props.getPageForChannel(c)\r\n        : 0;\r\n\r\n      // load image first if missing\r\n      let tileId =\r\n        page + \",\" + lv + \",\" + x + \",\" + y + \",\" + this.props.fileId;\r\n      let img = this.props.tiles.getVisibleImage(tileId);\r\n      if (img) {\r\n        // image is loaded -> draw it\r\n        let img = this.props.tiles.getVisibleImage(tileId);\r\n        this.imgLoaded = img.width > 0;\r\n        if (this.imgLoaded) {\r\n          this.vw = this.props.ome.sizeX;\r\n          this.vh = this.props.ome.sizeY;\r\n\r\n          let coloredImg = this.props.tiles.getColoredImage(tileId);\r\n\r\n          if (coloredImg) {\r\n            // composition should be difference for fluorescence\r\n            // see https://developer.mozilla.org/en-US/docs/Web/API/CanvasRenderingContext2D/globalCompositeOperation\r\n            this.ctx.globalCompositeOperation = \"screen\";\r\n            // draw colored image layer\r\n            if (\r\n              Object.prototype.toString.call(coloredImg) ===\r\n                \"[object HTMLCanvasElement]\" &&\r\n              this.props.tiles.getColoredImage(tileId)\r\n            ) {\r\n              this.ctx.drawImage(\r\n                coloredImg,\r\n                x * this.vw,\r\n                y * this.vh,\r\n                this.vw,\r\n                this.vh\r\n              );\r\n            }\r\n          }\r\n        }\r\n        this.ctx.setTransform(1, 0, 0, 1, 0, 0);\r\n        this.zoomOut();\r\n        this.initialized = true;\r\n      }\r\n    }\r\n\r\n    let mainCanvas = this.props.canvas;\r\n\r\n    let screenX = this.props.position.x / this.props.zoom;\r\n    let screenY = this.props.position.y / this.props.zoom;\r\n    let screenW = mainCanvas.width / this.props.zoom;\r\n    let screenH = mainCanvas.height / this.props.zoom;\r\n\r\n    // offset of minimap in view\r\n    let offsetX = -this.ctx.getTransform().e / this.ctx.getTransform().a;\r\n    let offsetY = -this.ctx.getTransform().f / this.ctx.getTransform().a;\r\n\r\n    // back to default overlay composition operation\r\n    // see https://developer.mozilla.org/en-US/docs/Web/API/CanvasRenderingContext2D/globalCompositeOperation\r\n    this.ctx.globalCompositeOperation = \"source-over\";\r\n\r\n    // draw screen region\r\n    this.ctx.lineWidth = 2 / this.ctx.getTransform().a;\r\n    this.ctx.strokeStyle = this.props.theme.palette.primary.main;\r\n    this.ctx.beginPath();\r\n    this.ctx.rect(screenX, screenY, screenW, screenH);\r\n    this.ctx.moveTo(screenX + screenW / 2, screenY);\r\n    this.ctx.lineTo(screenX + screenW / 2, offsetY);\r\n    this.ctx.moveTo(screenX + screenW / 2, screenY + screenH);\r\n    this.ctx.lineTo(\r\n      screenX + screenW / 2,\r\n      this.canvas.height / this.ctx.getTransform().a\r\n    );\r\n    this.ctx.moveTo(offsetX, screenY + screenH / 2);\r\n    this.ctx.lineTo(screenX, screenY + screenH / 2);\r\n    this.ctx.moveTo(screenX + screenW, screenY + screenH / 2);\r\n    this.ctx.lineTo(\r\n      this.canvas.width / this.ctx.getTransform().a,\r\n      screenY + screenH / 2\r\n    );\r\n    this.ctx.stroke();\r\n  }\r\n\r\n  // returns the current zoom scale\r\n  getScale() {\r\n    return this.ctx.getTransform().a;\r\n  }\r\n\r\n  // returns position of our image\r\n  getPosition() {\r\n    return {\r\n      x: -this.ctx.getTransform().e,\r\n      y: -this.ctx.getTransform().f,\r\n    };\r\n  }\r\n\r\n  getCtx = () => {\r\n    let c = this.ctx;\r\n    return c;\r\n  };\r\n\r\n  miniMapMouseEvent = (event) => {\r\n    // transform mouse coordinates on screen to relative to minimap componenent coordinates\r\n    let x = event.pageX - this.state.x;\r\n    let y = event.pageY - this.state.y;\r\n    // transform coordinates into world space\r\n    let pt = this.ctx.transformedPoint(x, y);\r\n    // let renderer navigate to clicked point\r\n    this.props.onMoveTo({ x: pt.x, y: pt.y });\r\n    this.props.chainMouseMove(x, y, event);\r\n  };\r\n\r\n  // handle dragging of the minimap region rectangle\r\n  mouseDown = (event) => {\r\n    this.miniMapMouseEvent(event);\r\n    this.dragging = true;\r\n  };\r\n\r\n  // handle dragging of the minimap region rectangle\r\n  mouseMove = (event) => {\r\n    if (this.dragging) {\r\n      this.miniMapMouseEvent(event);\r\n    }\r\n  };\r\n\r\n  mouseUp = () => {\r\n    this.dragging = false;\r\n  };\r\n\r\n  // zoom event in minimap\r\n  mousewheel = (event) => {\r\n    let x = event.pageX - this.state.x;\r\n    let y = event.pageY - this.state.y;\r\n    this.props.zoomMouseWheel(event, x, y);\r\n  };\r\n\r\n  // drag stop event of minimap\r\n  stopEvent = () => {\r\n    let bounds = this.root.getBoundingClientRect();\r\n    if (this.props.inSideBar) {\r\n      bounds.x = 0;\r\n      bounds.y = 0;\r\n    }\r\n    this.setState({ grabbing: false, x: bounds.x, y: bounds.y });\r\n  };\r\n\r\n  render() {\r\n    const { classes, pointerEvents } = this.props;\r\n    const { grabbing } = this.state;\r\n\r\n    let classToUse = this.props.inSideBar ? classes.rootsideBar : classes.root;\r\n\r\n    return (\r\n      <Draggable\r\n        handle=\".handle\"\r\n        onStart={() => this.setState({ grabbing: true })}\r\n        onStop={this.stopEvent}\r\n      >\r\n        <div\r\n          ref={(c) => (this.root = c)}\r\n          className={classNames(classToUse, grabbing && classes.grabbing)}\r\n          style={{\r\n            pointerEvents: pointerEvents ? \"all\" : \"none\",\r\n            top: this.props.canvas.height - 175,\r\n            zIndex: 9999,\r\n          }}\r\n        >\r\n          <canvas\r\n            ref={(c) => {\r\n              this.canvas = c;\r\n            }}\r\n            className={classes.canvas}\r\n            onMouseDown={this.mouseDown}\r\n            onMouseMove={this.mouseMove}\r\n            onMouseUp={this.mouseUp}\r\n          />\r\n          {!this.props.inSideBar && (\r\n            <DragIndicator\r\n              style={{ zIndex: 10000 }}\r\n              className={classNames(\r\n                \"handle\",\r\n                classes.dragIndicator,\r\n                grabbing && classes.grabbing\r\n              )}\r\n            />\r\n          )}\r\n        </div>\r\n      </Draggable>\r\n    );\r\n  }\r\n}\r\n\r\n// define the component's interface\r\nMiniMap.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  ome: PropTypes.object,\r\n  theme: PropTypes.object,\r\n  zoom: PropTypes.number,\r\n  onMoveTo: PropTypes.func,\r\n  onScaleOnly: PropTypes.func,\r\n  position: PropTypes.object,\r\n  histogramConfig: PropTypes.object,\r\n  canvas: PropTypes.object,\r\n  pointerEvents: PropTypes.bool,\r\n  inSideBar: PropTypes.bool,\r\n  zoomMouseWheel: PropTypes.func,\r\n  chainMouseMove: PropTypes.func,\r\n  componentRef: PropTypes.func,\r\n  // from withTiles\r\n  tiles: PropTypes.object,\r\n  fileId: PropTypes.string,\r\n  getPageForChannel: PropTypes.func,\r\n};\r\n\r\nexport default withTiles(withTheme(withStyles(styles)(MiniMap)));\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n\r\nimport { FontAwesomeIcon } from \"@fortawesome/react-fontawesome\";\r\nimport { faLayerGroup } from \"@fortawesome/free-solid-svg-icons\";\r\nimport { IconButton, Slider, TextField, Tooltip } from \"@mui/material\";\r\n\r\nimport {\r\n  PlayCircleOutline,\r\n  PauseCircleOutline,\r\n  ArrowDropUp,\r\n  ArrowDropDown,\r\n} from \"@mui/icons-material\";\r\n\r\nconst styles = {\r\n  root: {\r\n    width: 40,\r\n    position: \"absolute\",\r\n    top: 70,\r\n    bottom: 185,\r\n    left: 5,\r\n    color: \"#ffffff\",\r\n\r\n    padding: 0,\r\n    \"& :active\": {\r\n      outline: \"\",\r\n    },\r\n    background: \"#000000AA\",\r\n    border: \"2px solid rgb(85, 85, 85)\",\r\n    borderRadius: 10,\r\n  },\r\n  barIcon: {\r\n    position: \"absolute\",\r\n    left: 0,\r\n    top: 4,\r\n    height: 26,\r\n    width: \"36px!important\",\r\n    color: \"#fff\",\r\n  },\r\n  stepUp: {\r\n    position: \"absolute\",\r\n    top: 174,\r\n    left: 5,\r\n    padding: 0,\r\n    color: \"#fff\",\r\n  },\r\n  stepDown: {\r\n    position: \"absolute\",\r\n    bottom: 32,\r\n    left: 5,\r\n    padding: 0,\r\n    color: \"#fff\",\r\n  },\r\n  slider: {\r\n    position: \"absolute\",\r\n    top: 200,\r\n    left: 2,\r\n    bottom: 58,\r\n  },\r\n  verticalTextfield: {\r\n    position: \"absolute\",\r\n    left: 0,\r\n    color: \"#fff\",\r\n\r\n    \"& div\": {\r\n      color: \"#fff\",\r\n      marginTop: 4,\r\n      width: \"100%\",\r\n    },\r\n    \"& label\": {\r\n      color: \"#fff !important\",\r\n      fontSize: 11,\r\n      lineHeight: \"14px\",\r\n      padding: 0,\r\n      width: \"100%\",\r\n      textAlign: \"center\",\r\n      margin: 0,\r\n      left: \"-5px\",\r\n    },\r\n    \"& input\": {\r\n      marginTop: 4,\r\n      padding: \"0px 0 0px\",\r\n      textAlign: \"center\",\r\n    },\r\n    \"& .MuiOutlinedInput-input\": {\r\n      \"&::-webkit-outer-spin-button, &::-webkit-inner-spin-button\": {\r\n        \"-webkit-appearance\": \"none\",\r\n      },\r\n    },\r\n  },\r\n  playPauseDown: {\r\n    position: \"absolute\",\r\n    top: 142,\r\n    padding: 5,\r\n    color: \"#fff\",\r\n  },\r\n  playPauseUp: {\r\n    position: \"absolute\",\r\n    bottom: 0,\r\n    padding: 5,\r\n    color: \"#fff\",\r\n  },\r\n};\r\n\r\nfunction ValueLabelComponent(props) {\r\n  const { children, open, value } = props;\r\n\r\n  return (\r\n    <Tooltip\r\n      disableInteractive\r\n      style={{ marginTop: -5 }}\r\n      open={open}\r\n      enterTouchDelay={0}\r\n      placement=\"right\"\r\n      title={Math.round(value)}\r\n    >\r\n      {children}\r\n    </Tooltip>\r\n  );\r\n}\r\n\r\nValueLabelComponent.propTypes = {\r\n  children: PropTypes.element.isRequired,\r\n  open: PropTypes.bool.isRequired,\r\n  value: PropTypes.number.isRequired,\r\n};\r\n\r\nclass ZStackBar extends Component {\r\n  render() {\r\n    const {\r\n      classes,\r\n      ome,\r\n      z,\r\n      minZ,\r\n      maxZ,\r\n      zsr,\r\n      onStep,\r\n      onChangeZ,\r\n      onChangeZValue,\r\n      onChangeZSr,\r\n      playing,\r\n      playDirection,\r\n      onPlayPause,\r\n      pointerEvents,\r\n    } = this.props;\r\n\r\n    return (\r\n      <div\r\n        className={classes.root}\r\n        style={{ pointerEvents: pointerEvents ? \"all\" : \"none\" }}\r\n      >\r\n        <FontAwesomeIcon className={classes.barIcon} icon={faLayerGroup} />\r\n        <Tooltip disableInteractive title={\"Z position: \" + z}>\r\n          <TextField\r\n            className={classes.verticalTextfield}\r\n            name=\"Textfield\"\r\n            style={{ top: 50 }}\r\n            label=\"Z\"\r\n            value={Math.round(z)}\r\n            min={0}\r\n            max={ome.sizeZ - 1}\r\n            type=\"number\"\r\n            onChange={(e) =>\r\n              onChangeZValue(\r\n                Math.max(\r\n                  0,\r\n                  Math.min(ome.sizeZ - 1, parseInt(e.target.value, 10))\r\n                )\r\n              )\r\n            }\r\n          />\r\n        </Tooltip>\r\n        <Tooltip\r\n          disableInteractive\r\n          title={\"Frames per minute: \" + Math.round(zsr)}\r\n        >\r\n          <TextField\r\n            className={classes.verticalTextfield}\r\n            name=\"Textfield\"\r\n            style={{ top: 100 }}\r\n            label=\"FPM\"\r\n            value={zsr}\r\n            type=\"number\"\r\n            onChange={(e) => {\r\n              onChangeZSr(Math.max(1, parseInt(e.target.value, 10)));\r\n            }}\r\n          />\r\n        </Tooltip>\r\n        <IconButton\r\n          className={classes.playPauseDown}\r\n          style={{\r\n            transform:\r\n              playing && playDirection < 0 ? \"rotate(0deg)\" : \"rotate(90deg)\",\r\n          }}\r\n          onClick={() =>\r\n            playDirection > 0\r\n              ? onPlayPause(true, -1)\r\n              : onPlayPause(!playing, -1)\r\n          }\r\n          size=\"large\"\r\n        >\r\n          {playing && playDirection < 0 ? (\r\n            <PauseCircleOutline color=\"inherit\" />\r\n          ) : (\r\n            <PlayCircleOutline color=\"inherit\" />\r\n          )}\r\n        </IconButton>\r\n        <IconButton\r\n          className={classes.stepUp}\r\n          onClick={() => onStep(1)}\r\n          size=\"large\"\r\n        >\r\n          <ArrowDropUp color=\"inherit\" />\r\n        </IconButton>\r\n        <div className={classes.slider}>\r\n          <Slider\r\n            orientation=\"vertical\"\r\n            min={0}\r\n            max={ome.sizeZ - 1}\r\n            ValueLabelComponent={ValueLabelComponent}\r\n            valueLabelDisplay=\"auto\"\r\n            value={[minZ, z, maxZ]}\r\n            onChange={onChangeZ}\r\n            color=\"primary\"\r\n          />\r\n        </div>\r\n        <IconButton\r\n          className={classes.stepDown}\r\n          onClick={() => onStep(-1)}\r\n          size=\"large\"\r\n        >\r\n          <ArrowDropDown color=\"inherit\" />\r\n        </IconButton>\r\n        <IconButton\r\n          className={classes.playPauseUp}\r\n          style={{\r\n            transform:\r\n              playing && playDirection > 0 ? \"rotate(0deg)\" : \"rotate(-90deg)\",\r\n          }}\r\n          onClick={() =>\r\n            playDirection > 0 ? onPlayPause(!playing, 1) : onPlayPause(true, 1)\r\n          }\r\n          size=\"large\"\r\n        >\r\n          {playing && playDirection > 0 ? (\r\n            <PauseCircleOutline color=\"inherit\" />\r\n          ) : (\r\n            <PlayCircleOutline color=\"inherit\" />\r\n          )}\r\n        </IconButton>\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\n// define the component's interface\r\nZStackBar.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  ome: PropTypes.object,\r\n  playing: PropTypes.bool,\r\n  playDirection: PropTypes.number,\r\n  z: PropTypes.number,\r\n  minZ: PropTypes.number,\r\n  maxZ: PropTypes.number,\r\n  onStep: PropTypes.func,\r\n  onChangeZSr: PropTypes.func,\r\n  onChangeZValue: PropTypes.func,\r\n  zsr: PropTypes.number,\r\n  onChangeZ: PropTypes.func,\r\n  onPlayPause: PropTypes.func,\r\n  pointerEvents: PropTypes.bool,\r\n};\r\n\r\nexport default withStyles(styles)(ZStackBar);\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n\r\nimport { FontAwesomeIcon } from \"@fortawesome/react-fontawesome\";\r\nimport { faInfo } from \"@fortawesome/free-solid-svg-icons\";\r\nimport { Typography } from \"@mui/material\";\r\n\r\nconst styles = {\r\n  root: {\r\n    pointerEvents: \"none\",\r\n    width: \"auto\",\r\n    maxWidth: \"600px\",\r\n    height: 46,\r\n\r\n    position: \"absolute\",\r\n    top: 10,\r\n    left: 5,\r\n    color: \"#ffffff\",\r\n\r\n    padding: 0,\r\n    \"& :active\": {\r\n      outline: \"\",\r\n    },\r\n    background: \"#000000AA\",\r\n    border: \"2px solid rgb(85, 85, 85)\",\r\n    borderRadius: 10,\r\n    zIndex: 9999,\r\n  },\r\n  barIcon: {\r\n    position: \"absolute\",\r\n    top: -1,\r\n    left: 2,\r\n    height: 42,\r\n    width: \"36px!important\",\r\n    padding: 8,\r\n    color: \"#ffffff\",\r\n  },\r\n  infoArea: {\r\n    paddingLeft: \"40px\",\r\n    paddingRight: \"10px\",\r\n    right: 0,\r\n    top: 0,\r\n    bottom: 0,\r\n    color: \"#fff\",\r\n  },\r\n};\r\n\r\nclass ImageInfo extends Component {\r\n  render() {\r\n    const { classes, ome } = this.props;\r\n\r\n    return (\r\n      <div className={classes.root}>\r\n        <FontAwesomeIcon className={classes.barIcon} icon={faInfo} />\r\n        {ome && (\r\n          <div className={classes.infoArea}>\r\n            <Typography color=\"inherit\" noWrap={true}>\r\n              {ome.fileName}{\" \"}\r\n              {ome.sizeS > 1 && <span>, Scene {ome.scene + 1}</span>}\r\n            </Typography>\r\n            <Typography color=\"inherit\" noWrap={true} style={{ fontSize: 12 }}>\r\n              Size: {ome.sizeX}x{ome.sizeY}\r\n            </Typography>\r\n          </div>\r\n        )}\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\n// define the component's interface\r\nImageInfo.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  ome: PropTypes.object,\r\n};\r\n\r\nexport default withStyles(styles)(ImageInfo);\r\n","import { IconButton, Tooltip } from \"@mui/material\";\r\nimport React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport classNames from \"classnames\";\r\nimport {\r\n  faRuler,\r\n  faStopwatch,\r\n  faLayerGroup,\r\n  faInfo,\r\n  faTable,\r\n  faInfoCircle,\r\n} from \"@fortawesome/free-solid-svg-icons\";\r\nimport { FontAwesomeIcon } from \"@fortawesome/react-fontawesome\";\r\nimport { UnfoldMore, LinearScale, Map } from \"@mui/icons-material\";\r\n\r\nclass ToggleButton extends Component {\r\n  static defaultProps = {\r\n    disabled: false,\r\n  };\r\n\r\n  render() {\r\n    const { title, name, value, icon, onToggle, classes, disabled } =\r\n      this.props;\r\n\r\n    return (\r\n      <Tooltip\r\n        disableInteractive\r\n        title={disabled ? `${title}: Currently not available` : title}\r\n      >\r\n        <span>\r\n          <IconButton\r\n            className={classNames(\r\n              classes.toolbarButton,\r\n              value && classes.toolbarButtonChecked\r\n            )}\r\n            onClick={() => (disabled ? {} : onToggle(name))}\r\n            size=\"small\"\r\n            disabled={disabled}\r\n          >\r\n            {icon === \"MapIcon\" && (\r\n              <Map className={classes.toolbarButtonIcon} />\r\n            )}\r\n            {icon === \"faInfoCircle\" && <FontAwesomeIcon icon={faInfoCircle} />}\r\n            {icon === \"faRuler\" && <FontAwesomeIcon icon={faRuler} />}\r\n            {icon === \"faStopwatch\" && <FontAwesomeIcon icon={faStopwatch} />}\r\n            {icon === \"faLayerGroup\" && <FontAwesomeIcon icon={faLayerGroup} />}\r\n            {icon === \"faInfo\" && <FontAwesomeIcon icon={faInfo} />}\r\n            {icon === \"LinearScaleIcon\" && (\r\n              <LinearScale\r\n                className={classes.toolbarButtonIcon}\r\n                style={{ transform: \"rotate(90deg)\" }}\r\n              />\r\n            )}\r\n            {icon === \"faTable\" && <FontAwesomeIcon icon={faTable} />}\r\n            {icon === \"UnfoldMore\" && (\r\n              <UnfoldMore\r\n                style={{ marginTop: -5, transform: \"rotate(90deg)\" }}\r\n              />\r\n            )}\r\n          </IconButton>\r\n        </span>\r\n      </Tooltip>\r\n    );\r\n  }\r\n}\r\n\r\nToggleButton.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  title: PropTypes.string,\r\n  key: PropTypes.string,\r\n  value: PropTypes.bool,\r\n  icon: PropTypes.string,\r\n  onToggle: PropTypes.func,\r\n  name: PropTypes.string,\r\n  disabled: PropTypes.bool,\r\n};\r\n\r\nexport default ToggleButton;\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nconst PersistentStorageContext = React.createContext();\r\n\r\nexport const withPersistentStorage = (Component) => {\r\n  const WrappedComponent = (props) => (\r\n    <PersistentStorageContext.Consumer>\r\n      {(context) => <Component {...props} persistentStorage={context} />}\r\n    </PersistentStorageContext.Consumer>\r\n  );\r\n\r\n  WrappedComponent.displayName = `withPersistentStorage(${\r\n    Component.displayName || Component.name || \"Component\"\r\n  })`;\r\n\r\n  return WrappedComponent;\r\n};\r\n\r\n// this is the main component, it has to be added at the root of the app.\r\n// all components that use withPersistentStorage(...) will have access to it via this.props.persistentStorage...\r\nclass PersistentStorageProvider extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n    this._isMounted = false;\r\n    const loadedProjectState = JSON.parse(\r\n      localStorage.getItem(this.props.projectId)\r\n    );\r\n    this.projectState = loadedProjectState ? loadedProjectState : {};\r\n    this.projectTypeState = null;\r\n  }\r\n\r\n  save(key, value) {\r\n    let v = JSON.stringify(value);\r\n    let stateObject = { ...this.projectState }; //copy whole state for saving\r\n    stateObject[key] = v;\r\n    localStorage.setItem(this.props.projectId, JSON.stringify(stateObject));\r\n    this.projectState[key] = v;\r\n  }\r\n\r\n  load(key) {\r\n    if (typeof this.projectState[key] === \"string\") {\r\n      try {\r\n        return JSON.parse(this.projectState[key]);\r\n      } catch (e) {\r\n        return this.projectState[key];\r\n      }\r\n    } else {\r\n      return this.projectState[key];\r\n    }\r\n  }\r\n\r\n  saveProjectTypeValue(projectType, key, value) {\r\n    let v = JSON.stringify(value);\r\n    let stateObject = { ...this.projectTypeState }; //copy whole state for saving\r\n    stateObject[key] = v;\r\n    localStorage.setItem(\"local_\" + projectType, JSON.stringify(stateObject));\r\n    this.projectState[key] = v;\r\n  }\r\n\r\n  loadProjectTypeValue(projectType, key) {\r\n    if (this.projectTypeState == null) {\r\n      this.projectTypeState = JSON.parse(\r\n        localStorage.getItem(\"local_\" + projectType)\r\n      );\r\n    }\r\n    if (this.projectTypeState == null) return null;\r\n    if (typeof this.projectTypeState[key] === \"string\") {\r\n      try {\r\n        return JSON.parse(this.projectTypeState[key]);\r\n      } catch (e) {\r\n        return this.projectTypeState[key];\r\n      }\r\n    } else {\r\n      return this.projectTypeState[key];\r\n    }\r\n  }\r\n\r\n  loadAll() {\r\n    let stateObject = {};\r\n    for (const [key, value] of Object.entries(this.projectState)) {\r\n      try {\r\n        stateObject[key] = JSON.parse(value);\r\n      } catch (e) {\r\n        stateObject[key] = value;\r\n      }\r\n    }\r\n    return stateObject;\r\n  }\r\n\r\n  render() {\r\n    return (\r\n      <PersistentStorageContext.Provider\r\n        value={{\r\n          save: (key, value) => this.save(key, value),\r\n          saveProjectTypeValue: (projectType, key, value) =>\r\n            this.saveProjectTypeValue(projectType, key, value),\r\n          load: (key) => this.load(key),\r\n          loadProjectTypeValue: (projectType, key) =>\r\n            this.loadProjectTypeValue(projectType, key),\r\n          loadAll: () => this.loadAll(),\r\n        }}\r\n      >\r\n        {this.props.children}\r\n      </PersistentStorageContext.Provider>\r\n    );\r\n  }\r\n}\r\n\r\nPersistentStorageProvider.propTypes = {\r\n  projectId: PropTypes.string,\r\n  children: PropTypes.element.isRequired,\r\n};\r\n\r\nexport default PersistentStorageProvider;\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nconst ResultTabContext = React.createContext();\r\n\r\nexport const withResultTab = (Component) => {\r\n  const WrappedComponent = ({ ...propsWithoutClasses }) => (\r\n    <ResultTabContext.Consumer>\r\n      {(context) => <Component {...propsWithoutClasses} resultTab={context} />}\r\n    </ResultTabContext.Consumer>\r\n  );\r\n\r\n  WrappedComponent.displayName = `withResultTab(${\r\n    Component.displayName || Component.name || \"Component\"\r\n  })`;\r\n\r\n  return WrappedComponent;\r\n};\r\n\r\n// this is the main component, it has to be added at the root of the app.\r\n// all components that use withResultTab(...) will have access to it via this.props.resultTab...\r\nclass ResultTabProvider extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n\r\n    this.selectedRoi = 0;\r\n    this.selectedChildIndex = 1;\r\n    this.selectedStructure = 0;\r\n    this.changeFile = false;\r\n    this.hundredTiles = false;\r\n    this.rendererInitialized = false;\r\n    this.rendererCanvas = null;\r\n    this.rendererCtx = null;\r\n    this.zoomLevelFixed = false;\r\n    this.gridExists = false;\r\n    this.resetPressed = false;\r\n    this.selSampleSet = false;\r\n    this.fileChange = false;\r\n  }\r\n\r\n  getSelectedRoi() {\r\n    return this.selectedRoi;\r\n  }\r\n\r\n  setSelectedRoi(a) {\r\n    this.selectedRoi = a;\r\n  }\r\n\r\n  getSelectedChildIndex() {\r\n    return this.selectedChildIndex;\r\n  }\r\n\r\n  setSelectedChildIndex(a) {\r\n    this.selectedChildIndex = a;\r\n  }\r\n\r\n  getSelectedStructure() {\r\n    return this.selectedStructure;\r\n  }\r\n\r\n  setSelectedStructure(a) {\r\n    this.selectedStructure = a;\r\n  }\r\n\r\n  getChangeFile() {\r\n    return this.changeFile;\r\n  }\r\n\r\n  setChangeFile(a) {\r\n    this.changeFile = a;\r\n  }\r\n\r\n  getHundredTiles() {\r\n    return this.hundredTiles;\r\n  }\r\n\r\n  setHundredTiles(a) {\r\n    this.hundredTiles = a;\r\n  }\r\n\r\n  getRendererInitialized() {\r\n    return this.rendererInitialized;\r\n  }\r\n\r\n  setRendererInitialized(a) {\r\n    this.rendererInitialized = a;\r\n  }\r\n\r\n  getRendererCanvas() {\r\n    return this.rendererCanvas;\r\n  }\r\n\r\n  setRendererCanvas(a) {\r\n    this.rendererCanvas = a;\r\n  }\r\n\r\n  getRendererCtx() {\r\n    return this.rendererCtx;\r\n  }\r\n\r\n  setRendererCtx(a) {\r\n    this.rendererCtx = a;\r\n  }\r\n\r\n  // returns position of our image\r\n  getPosition = () => {\r\n    return {\r\n      x: -this.rendererCtx.getTransform().e,\r\n      y: -this.rendererCtx.getTransform().f,\r\n    };\r\n  };\r\n\r\n  // returns the current zoom scale\r\n  getScale = () => {\r\n    return this.rendererCtx ? this.rendererCtx.getTransform().a : 1;\r\n  };\r\n\r\n  /**\r\n   * Is the current zoom level be fixed?\r\n   * @returns {bool} Is the current zoom level fixed?\r\n   */\r\n  getZoomLevelFixed() {\r\n    return this.zoomLevelFixed;\r\n  }\r\n\r\n  /**\r\n   * Toggle the state of zoomLevelFixed.\r\n   */\r\n  toggleZoomLevelFixed() {\r\n    this.zoomLevelFixed = !this.zoomLevelFixed;\r\n  }\r\n\r\n  /**\r\n   * Set the attribute zoomLevelFixed to true or false.\r\n   * @param {bool} value Should the zoom be fixed?\r\n   */\r\n  setZoomLevelFixed(value) {\r\n    this.zoomLevelFixed = value;\r\n  }\r\n\r\n  getGridExists() {\r\n    return this.gridExists;\r\n  }\r\n\r\n  setGridExists(a) {\r\n    this.gridExists = a;\r\n  }\r\n\r\n  getResetPressed() {\r\n    return this.resetPressed;\r\n  }\r\n\r\n  setResetPressed(a) {\r\n    this.resetPressed = a;\r\n  }\r\n\r\n  getSelSampleSet() {\r\n    return this.selSampleSet;\r\n  }\r\n\r\n  setSelSampleSet(a) {\r\n    this.selSampleSet = a;\r\n  }\r\n\r\n  getFileChange() {\r\n    return this.fileChange;\r\n  }\r\n\r\n  setFileChange(a) {\r\n    this.fileChange = a;\r\n  }\r\n\r\n  render() {\r\n    return (\r\n      <ResultTabContext.Provider\r\n        value={{\r\n          getSelectedRoi: () => this.getSelectedRoi(),\r\n          setSelectedRoi: (a) => this.setSelectedRoi(a),\r\n          getSelectedChildIndex: () => this.getSelectedChildIndex(),\r\n          setSelectedChildIndex: (a) => this.setSelectedChildIndex(a),\r\n          getSelectedStructure: () => this.getSelectedStructure(),\r\n          setSelectedStructure: (a) => this.setSelectedStructure(a),\r\n          getChangeFile: () => this.getChangeFile(),\r\n          setChangeFile: (a) => this.setChangeFile(a),\r\n          getHundredTiles: () => this.getHundredTiles(),\r\n          setHundredTiles: (a) => this.setHundredTiles(a),\r\n          getRendererInitialized: () => this.getRendererInitialized(),\r\n          setRendererInitialized: (a) => this.setRendererInitialized(a),\r\n          getRendererCanvas: () => this.getRendererCanvas(),\r\n          setRendererCanvas: (a) => this.setRendererCanvas(a),\r\n          getRendererCtx: () => this.getRendererCtx(),\r\n          setRendererCtx: (a) => this.setRendererCtx(a),\r\n          getPosition: () => this.getPosition(),\r\n          getScale: () => this.getScale(),\r\n          getZoomLevelFixed: () => this.getZoomLevelFixed(),\r\n          toggleZoomLevelFixed: () => this.toggleZoomLevelFixed(),\r\n          setZoomLevelFixed: (a) => this.setZoomLevelFixed(a),\r\n          getGridExists: () => this.getGridExists(),\r\n          setGridExists: (a) => this.setGridExists(a),\r\n          getResetPressed: () => this.getResetPressed(),\r\n          setResetPressed: (a) => this.setResetPressed(a),\r\n          getSelSampleSet: () => this.getSelSampleSet(),\r\n          setSelSampleSet: (a) => this.setSelSampleSet(a),\r\n          getFileChange: () => this.getFileChange(),\r\n          setFileChange: (a) => this.setFileChange(a),\r\n        }}\r\n      >\r\n        {this.props.children}\r\n      </ResultTabContext.Provider>\r\n    );\r\n  }\r\n}\r\n\r\nResultTabProvider.propTypes = {\r\n  children: PropTypes.element.isRequired,\r\n};\r\n\r\nexport default ResultTabProvider;\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport withStyles from \"@mui/styles/withStyles\";\r\nimport {\r\n  CircularProgress,\r\n  IconButton,\r\n  LinearProgress,\r\n  Tooltip,\r\n  Fade,\r\n  Popper,\r\n  Paper,\r\n} from \"@mui/material\";\r\nimport { trackTransforms, getBaseLog } from \"../viewer/utils/CanvasUtil\";\r\nimport {\r\n  configureImage,\r\n  colorInImage,\r\n} from \"../viewer/utils/RendererUtils\";\r\nimport Backend from \"../common/utils/Backend\";\r\nimport ScaleBar from \"../viewer/components/ScaleBar\";\r\nimport ZoomBar from \"../viewer/components/ZoomBar\";\r\nimport MiniMap from \"../viewer/components/MiniMap\";\r\nimport ZStackBar from \"../viewer/components/ZStackBar\";\r\nimport ImageInfo from \"../viewer/components/ImageInfo\";\r\nimport ToggleButton from \"../viewer/components/ToggleButton\";\r\nimport \"react-resizable/css/styles.css\";\r\n\r\nimport { withPersistentStorage } from \"../viewer/contexts/PersistentStorageContext\";\r\nimport { withTiles } from \"../viewer/contexts/TilesContext\";\r\nimport { withResultTab } from \"../viewer/contexts/ResultTabContext\";\r\nimport { ViewQuilt } from \"@mui/icons-material\";\r\nimport KeyboardArrowLeftIcon from \"@mui/icons-material/KeyboardArrowLeft\";\r\nimport KeyboardArrowRightIcon from \"@mui/icons-material/KeyboardArrowRight\";\r\n\r\n// debug flags\r\nconst FPS = false;\r\n\r\nconst styles = {\r\n  canvas: {\r\n    position: \"relative\",\r\n    display: \"block\",\r\n    width: \"100%\",\r\n    backgroundColor: \"#D3D3D3\",\r\n  },\r\n\r\n  root: {\r\n    height: \"100%\",\r\n  },\r\n\r\n  heatmapContainer: {\r\n    pointerEvents: \"none\",\r\n    position: \"absolute !important\",\r\n    zIndex: \"9998\",\r\n    width: \"100%\",\r\n    height: \"100%\",\r\n  },\r\n\r\n  toolbarButtonRoot: {\r\n    color: \"#666\",\r\n    position: \"absolute\",\r\n    top: 5,\r\n    right: 35,\r\n    zIndex: 100,\r\n  },\r\n  toolbarButtonRootSingle: {\r\n    color: \"#666\",\r\n    position: \"absolute\",\r\n    top: 5,\r\n    right: 5,\r\n    zIndex: 100,\r\n  },\r\n  toolbarButton: {\r\n    position: \"relative\",\r\n    display: \"inline-block\",\r\n\r\n    width: 40,\r\n    height: 40,\r\n    padding: 8,\r\n    margin: 0,\r\n  },\r\n  toolbarButtonIcon: {\r\n    verticalAlign: \"-4px\",\r\n  },\r\n  toolbarButtonChecked: {\r\n    width: 40,\r\n    color: \"#0673C1\",\r\n  },\r\n  progress: {\r\n    position: \"absolute\",\r\n    margin: -20,\r\n    left: \"50%\",\r\n    top: \"50%\",\r\n    zIndex: 1000,\r\n  },\r\n  fps: {\r\n    position: \"absolute\",\r\n    right: 50,\r\n    top: 50,\r\n    color: \"white\",\r\n    fontSize: 20,\r\n    pointerEvents: \"none\",\r\n  },\r\n  resizableContainer: {\r\n    \"& .react-resizable-handle\": {\r\n      pointerEvents: \"all\",\r\n    },\r\n    \"& .react-resizable-handle-se::before\": {\r\n      content: \"''\",\r\n      display: \"block\",\r\n      position: \"absolute\",\r\n      bottom: 3,\r\n      right: 3,\r\n      width: 6,\r\n      height: 6,\r\n      borderBottom: \"1px solid #0673c1\",\r\n      borderRight: \"1px solid #0673c1\",\r\n    },\r\n  },\r\n  fileNavLeftBtn: {\r\n    position: \"absolute\",\r\n    left: 5,\r\n    top: \"50%\",\r\n    marginTop: \"-40px\",\r\n    \"& svg\": {\r\n      fontSize: \"80px\",\r\n    },\r\n  },\r\n  fileNavRightBtn: {\r\n    position: \"absolute\",\r\n    right: 5,\r\n    top: \"50%\",\r\n    marginTop: \"-40px\",\r\n    \"& svg\": {\r\n      fontSize: \"80px\",\r\n    },\r\n  },\r\n};\r\n\r\nNumber.prototype.toBase = function (base) {\r\n  var symbols =\r\n    \"0123456789abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ\".split(\"\");\r\n  var decimal = this;\r\n  var conversion = \"\";\r\n\r\n  if (base > symbols.length || base <= 1) {\r\n    return false;\r\n  }\r\n\r\n  while (decimal >= 1) {\r\n    conversion =\r\n      symbols[decimal - base * Math.floor(decimal / base)] + conversion;\r\n    decimal = Math.floor(decimal / base);\r\n  }\r\n\r\n  return base < 11 ? parseInt(conversion) : conversion;\r\n};\r\n\r\nconst debounce = (func, delay) => {\r\n  let inDebounce;\r\n  return function () {\r\n    const context = this;\r\n    const args = arguments;\r\n    clearTimeout(inDebounce);\r\n    inDebounce = setTimeout(() => func.apply(context, args), delay);\r\n  };\r\n};\r\n\r\nclass Renderer extends Component {\r\n  _isMounted = false;\r\n\r\n  constructor(props) {\r\n    super(props);\r\n    // transmit context to componentRef\r\n    if (props.componentRef) props.componentRef(this);\r\n\r\n    this.state = {\r\n      previewWidth: 100,\r\n      previewHeight: 100,\r\n      dragStart: null,\r\n      isDrawing: false,\r\n      mouseOnCanvas: false,\r\n      ome: props.ome,\r\n      initialized: false,\r\n      initializedZ: false,\r\n      initialScale: 1,\r\n      tMin: 0,\r\n      tMax: 0,\r\n      t: 0,\r\n      z: Math.floor(props.ome.sizeZ / 2),\r\n      minZ: 0,\r\n      maxZ: props.ome.sizeZ - 1,\r\n      fps: 0,\r\n      // time playback\r\n      sr: 60,\r\n      // z playback\r\n      zsr: 60,\r\n      bufferSize: 100,\r\n      playing: false,\r\n      playingZ: false,\r\n      playDirection: 1,\r\n      playDirectionZ: 1,\r\n      miniMapKey: 0,\r\n      // tools\r\n      rois: [],\r\n      selectedROI: null,\r\n      limitVisibleRegions: false,\r\n      layerTrees: [],\r\n      previewRectChanged: false,\r\n      isBrightfield:\r\n        props.ome &&\r\n        props.ome.channels.length === 1 &&\r\n        props.ome.channels[0].type === \"brightfield\",\r\n      scaleBarData: null,\r\n      startY: 0,\r\n      showMiniMap: true,\r\n      showObjectIdx: false,\r\n      miniMapReady: false,\r\n      open: false,\r\n      anchorEl: null,\r\n      displayTimeBar: false,\r\n      displayZStackBar: false,\r\n      showScaleBar: true,\r\n      showTimeBar: false,\r\n      showZStackBar: false,\r\n      showImageInfo: true,\r\n      showZoomBar: true,\r\n      showResultTable: false,\r\n      showFileNavButtons: false,\r\n      hideMiniMap: false,\r\n    };\r\n    this.updateCounter = 0;\r\n    this.visibleRegionsLimit = 3000;\r\n    this.visibleRegionsRadius = 1000;\r\n    this.structureRegionLimits = [];\r\n    this.slowestStructureIdx = -1;\r\n    this.fastestStructureIdx = -1;\r\n    this.fileIdStateData = {};\r\n\r\n    this.lineIdx = 0;\r\n    this.keepRendering = true;\r\n\r\n    this.lastMoveTime = performance.now();\r\n\r\n    this.selROI = null;\r\n    window.setNewSelRoi = this.setNewSelRoi;\r\n    window.getMousePositionInImage = this.getMousePositionInImage;\r\n    window.setZoomLevelForGridSize = this.setZoomLevelForGridSize;\r\n\r\n    // frontend cached alpha channel images\r\n    this.visibleImage = [];\r\n    // frontend cached colored images\r\n    this.coloredImages = [];\r\n\r\n    this.hMat = [];\r\n    this.imgRegistered = true;\r\n    this.callbackCounter = 0;\r\n\r\n    this.oldVisibleRegionCount = 0;\r\n\r\n    this.gridTileCount = 0;\r\n\r\n    // fps history to smooth fps counter update\r\n    this.lastFps = Array.from(Array(10), () => 60);\r\n\r\n    this.createBackgroundPattern();\r\n    this.tempLayer = null;\r\n  }\r\n\r\n  setMountedState = (stateObject, callback) => {\r\n    if (this._isMounted) {\r\n      this.setState(stateObject, callback);\r\n    }\r\n  };\r\n\r\n  createBackgroundPattern = () => {\r\n    this.backgroundPattern = document.createElement(\"canvas\");\r\n    const patternContext = this.backgroundPattern.getContext(\"2d\");\r\n\r\n    // Give the pattern a width and height of 50\r\n    const w = 30;\r\n    const h = 30;\r\n    this.backgroundPattern.width = w;\r\n    this.backgroundPattern.height = h;\r\n\r\n    // Give the pattern a background color and draw an arc\r\n    patternContext.fillStyle = \"transparent\";\r\n    patternContext.strokeStyle = \"#999\";\r\n    patternContext.fillRect(0, 0, w, h);\r\n    patternContext.lineWidth = 1;\r\n    patternContext.moveTo(-w / 2, h);\r\n    patternContext.lineTo(w, -h / 2);\r\n    patternContext.moveTo(0, h + h / 2);\r\n    patternContext.lineTo(w + w / 2, 0);\r\n    patternContext.stroke();\r\n  };\r\n\r\n  componentDidMount = () => {\r\n    this._isMounted = true;\r\n    let stateObject = {};\r\n    this.canvas = document.getElementById(this.props.canvasId);\r\n\r\n    // get drawing context from canvas\r\n    this.ctx = this.canvas.getContext(\"2d\");\r\n\r\n    // bind mouse wheel events\r\n    this.canvas.addEventListener(\"DOMMouseScroll\", this.mousewheel, true);\r\n    this.canvas.addEventListener(\"mousewheel\", this.mousewheel, {\r\n      passive: false,\r\n    });\r\n    // bind mouse events\r\n    window.addEventListener(\"mouseup\", this.mouseup, { passive: true });\r\n    window.addEventListener(\"mousemove\", this.mousemove, { passive: true });\r\n\r\n    // extend context with some fancy additional transformation methods\r\n    trackTransforms(this.ctx);\r\n\r\n    // converts the relative size css information into an absolute size which we can access\r\n    this.canvas.width = this.canvas.offsetWidth;\r\n    this.canvas.height = this.canvas.offsetHeight;\r\n\r\n    // initialize position\r\n    stateObject.lastX = this.canvas.width / 2;\r\n    stateObject.lastY = this.canvas.height / 2;\r\n\r\n    this.t0 = performance.now();\r\n\r\n    let loadObject = [\r\n      \"hideMiniMap\",\r\n      \"showObjectIdx\",\r\n      \"showMiniMap\",\r\n      \"showScaleBar\",\r\n      \"showTimeBar\",\r\n      \"showZStackBar\",\r\n      \"showImageInfo\",\r\n      \"showZoomBar\",\r\n      \"showResultTable\",\r\n      \"showFileNavButtons\",\r\n    ];\r\n\r\n    let i = null;\r\n    if (this.props.showFullscreen) {\r\n      loadObject.forEach((element) => {\r\n        i = this.props.persistentStorage.load(element + \"Full\");\r\n        if (i === true || i === false) stateObject[element] = i;\r\n      });\r\n    } else {\r\n      loadObject.forEach((element) => {\r\n        i = this.props.persistentStorage.load(element);\r\n        if (i === true || i === false) stateObject[element] = i;\r\n      });\r\n    }\r\n\r\n    stateObject[\"displayTimeBar\"] = this.props.displayTimeBar;\r\n    stateObject[\"displayZStackBar\"] = this.props.displayZStackBar;\r\n    stateObject[\"showZStackBar\"] = this.props.showZStackBar;\r\n    // stateObject[\"showTimeBar\"] = this.props.showTimeBar;\r\n\r\n    this.setMountedState(stateObject, () => {\r\n      this.checkMiniMapVisivility();\r\n    });\r\n    //set mouse postition to center of canvas\r\n    this.mousePos = this.getMousePositionInImage();\r\n    this.draw();\r\n  };\r\n\r\n  componentDidUpdate(prevProps, prevState) {\r\n    const oldFileId = prevProps.fileId;\r\n    const newFileId = this.props.fileId;\r\n\r\n    // on file change => reset renderer cache\r\n    if (oldFileId && oldFileId !== newFileId) {\r\n      this.fileIdStateData[oldFileId] = prevState;\r\n\r\n      if (this.fileIdStateData[newFileId]) {\r\n        this.setMountedState(this.fileIdStateData[newFileId]);\r\n      }\r\n\r\n      setTimeout(() => this.zoomFit(), 100);\r\n      this.setMountedState({\r\n        miniMapKey: new Date().getTime(),\r\n      });\r\n    }\r\n  }\r\n\r\n  componentWillUnmount = () => {\r\n    this._isMounted = false;\r\n    // unbind mouse wheel events\r\n    this.canvas.removeEventListener(\"DOMMouseScroll\", this.mousewheel);\r\n    this.canvas.removeEventListener(\"mousewheel\", this.mousewheel);\r\n    // unbind mouse events\r\n    window.removeEventListener(\"mouseup\", this.mouseup, { passive: true });\r\n    window.removeEventListener(\"mousemove\", this.mousemove, { passive: true });\r\n    this.keepRendering = false;\r\n  };\r\n\r\n  reset = () => {\r\n    // resets renderer to initial state\r\n    //TODO: adapt for Splitscreen, so that not all frames are reseted\r\n    this.props.tiles.clearTiles();\r\n    // frontend cached alpha channel images\r\n    this.props.tiles.setVisibleImage([]);\r\n    // frontend cached colored images\r\n    this.props.tiles.setColoredImages([]);\r\n\r\n    this.setMountedState({\r\n      dragStart: null,\r\n      playing: false,\r\n      //initialized: false,\r\n    });\r\n\r\n    this.loadAllTiles();\r\n    // this.props.setChangingFile(false);\r\n    //this.props.setAIObjects();\r\n  };\r\n\r\n  getPage = (c, z, t) => {\r\n    // calculate page index from coordinates\r\n    return (\r\n      Math.round(t) * this.props.ome.channels.length * this.props.ome.sizeZ +\r\n      c * this.props.ome.sizeZ +\r\n      Math.round(z)\r\n    );\r\n  };\r\n\r\n  getPageForChannel = (c) => {\r\n    // calculate page index from coordinates\r\n    return (\r\n      Math.round(this.state.t) *\r\n        this.props.ome.channels.length *\r\n        this.props.ome.sizeZ +\r\n      Math.round(this.state.z) * this.props.ome.channels.length +\r\n      c\r\n    );\r\n  };\r\n\r\n  getMousePosition = () => {\r\n    return [this.mousePosition.mouseX, this.mousePosition.mouseY];\r\n  };\r\n\r\n  getMousePositionInImage = () => {\r\n    let x = this.props.getMousePosition()[0];\r\n    let y = this.props.getMousePosition()[1];\r\n    this.lastX = x - this.canvas.getBoundingClientRect().left;\r\n    this.lastY = y - this.canvas.getBoundingClientRect().top; //- this.canvas.offsetTop\r\n    // calculate mouse position in image coordinates\r\n    let p1 = this.getPointInCanvas({\r\n      x: this.lastX,\r\n      y: this.lastY,\r\n    });\r\n    let p2 = this.getPointInCanvas({ x: 0, y: 0 });\r\n    let p3 = this.getPosition();\r\n\r\n    p1.x += p2.x - p3.x / this.getScale();\r\n    p1.y += p2.y - p3.y / this.getScale();\r\n\r\n    return p1;\r\n  };\r\n\r\n  getPositionInImage = (position) => {\r\n    // calculate corner points top left (position==0), bottom right (position==1), center (position==2)\r\n    let X;\r\n    let Y;\r\n    if (position === 0) {\r\n      // top left\r\n      X = this.canvas.getBoundingClientRect().left;\r\n      Y = this.canvas.getBoundingClientRect().top; //64 - this.canvas.offsetTop + 32; // 32 is half of blue header\r\n    } else if (position === 1) {\r\n      // bottom right\r\n      X = this.canvas.getBoundingClientRect().right;\r\n      Y = this.canvas.getBoundingClientRect().bottom;\r\n      //- this.canvas.offsetTop + 32; // 32 is half of blue header\r\n    } else {\r\n      // center\r\n      X =\r\n        (this.canvas.getBoundingClientRect().left +\r\n          this.canvas.getBoundingClientRect().right) /\r\n        2;\r\n      Y =\r\n        (this.canvas.getBoundingClientRect().top +\r\n          this.canvas.getBoundingClientRect().bottom) /\r\n        2;\r\n      //+32; // 32 is half of blue header\r\n    }\r\n\r\n    // calculate mouse position in image coordinates\r\n    let p1 = this.getPointInCanvas({\r\n      x: X - this.canvas.getBoundingClientRect().left,\r\n      y: Y - this.canvas.getBoundingClientRect().top,\r\n    });\r\n    let p2 = this.getPointInCanvas({ x: 0, y: 0 });\r\n    let p3 = this.getPosition();\r\n    p1.x += p2.x - p3.x / this.getScale();\r\n    p1.y += p2.y - p3.y / this.getScale();\r\n\r\n    return p1;\r\n  };\r\n\r\n  getPointInCanvasCoord = (x, y) => {\r\n    let pt = {\r\n      x: Math.round(x * this.ctx.getTransform().a + this.ctx.getTransform().e),\r\n      y: Math.round(y * this.ctx.getTransform().d + this.ctx.getTransform().f),\r\n    };\r\n    return pt;\r\n  };\r\n\r\n  getPointInCanvas = (p) => {\r\n    try {\r\n      let tp = this.ctx.transformedPoint(p.x, p.y);\r\n      return {\r\n        x: tp.x,\r\n        y: tp.y,\r\n      };\r\n    } catch (ex) {\r\n      // Skip this frame\r\n      // console.error(ex);\r\n      return {\r\n        x: -1,\r\n        y: -1,\r\n      };\r\n    }\r\n  };\r\n\r\n  mousedown = (event) => {\r\n    let p1 = this.getMousePositionInImage();\r\n    this.mousePos = p1;\r\n    this.props.tiles.chainLeaderId = this.props.canvasId;\r\n\r\n    // start dragging if middle mouse button is down or not tool selected\r\n    if (event.button === 1 || event.button === 0) {\r\n      let dragStart = this.getPointInCanvas({ x: this.lastX, y: this.lastY });\r\n      this.setMountedState({\r\n        dragStart: dragStart,\r\n      });\r\n      if (this.props.isChained) {\r\n        if (this.props.showFullscreen) {\r\n          for (const value of Object.values(this.props.splitscreenFileIds)) {\r\n            let fDragStart = this.props.rendererDict[\r\n              \"Full\" + value\r\n            ].getPointInCanvas({\r\n              x: this.lastX,\r\n              y: this.lastY,\r\n            });\r\n            this.props.rendererDict[\"Full\" + value].setMountedState({\r\n              dragStart: fDragStart,\r\n            });\r\n          }\r\n        } else {\r\n          for (const value of Object.values(this.props.chainListFileIds)) {\r\n            let fDragStart = this.props.rendererDict[value].getPointInCanvas({\r\n              x: this.lastX,\r\n              y: this.lastY,\r\n            });\r\n            this.props.rendererDict[value].setMountedState({\r\n              dragStart: fDragStart,\r\n            });\r\n          }\r\n        }\r\n      }\r\n\r\n      this.canvas.style.cursor = \"move\";\r\n\r\n      if ((event.button === 0 || event.button === 1) && event.altKey) {\r\n        this.tempChainToggle = true;\r\n\r\n        if (this.props.showFullscreen) {\r\n          // this.props.fsChain();\r\n          console.log(\"fsChain\");\r\n        } else {\r\n          this.props.onChangeChain(\r\n            false,\r\n            this.props.splitscreenIdx,\r\n            this.props.fileId\r\n          );\r\n        }\r\n      }\r\n\r\n      // dont forward any event upwards\r\n      event.preventDefault();\r\n      return false;\r\n    } else {\r\n      if (!this.state.isDrawing) {\r\n        this.setMountedState({ isDrawing: true });\r\n      }\r\n    }\r\n  };\r\n\r\n  mouseBusy = () => {\r\n    return !this.canvas.style.cursor !== \"default\";\r\n  };\r\n\r\n  mousemove = () => {\r\n    //event\r\n    // if (this.props.resultTab.getZoomLevelFixed()) {\r\n    //   return;\r\n    // }\r\n    let p1 = this.getMousePositionInImage();\r\n    if (this.state.isDrawing || this.state.mouseOnCanvas) {\r\n      this.mousePos = p1;\r\n    } else {\r\n      this.middleMousePos();\r\n    }\r\n    if (this.dragROI) {\r\n      // handle roi dragging\r\n      this.dragROI.drag(p1, this.vw, this.vh);\r\n    } else if (this.resizeROI) {\r\n      // resize the roi if inside the image\r\n      this.resizeROI.resize(p1, this.vw, this.vh);\r\n    } else if (\r\n      this.state.dragStart &&\r\n      this.props.tiles.chainLeaderId === this.props.canvasId\r\n    ) {\r\n      // handle canvas dragging\r\n      let pt = this.getPointInCanvas({ x: this.lastX, y: this.lastY });\r\n      // translate canvas\r\n\r\n      this.ctx.translate(\r\n        pt.x - this.state.dragStart.x,\r\n        pt.y - this.state.dragStart.y\r\n      );\r\n      if (this.props.isChained) {\r\n        if (this.props.showFullscreen) {\r\n          for (const value of Object.values(this.props.splitscreenFileIds)) {\r\n            let fPt = this.props.rendererDict[\"Full\" + value].getPointInCanvas({\r\n              x: this.lastX,\r\n              y: this.lastY,\r\n            });\r\n            this.props.rendererDict[\"Full\" + value].chainMouseDrag(\r\n              fPt.x,\r\n              fPt.y\r\n            );\r\n          }\r\n        } else {\r\n          for (const value of Object.values(this.props.chainListFileIds)) {\r\n            let fPt = this.props.rendererDict[value].getPointInCanvas({\r\n              x: this.lastX,\r\n              y: this.lastY,\r\n            });\r\n            this.props.rendererDict[value].chainMouseDrag(fPt.x, fPt.y);\r\n          }\r\n        }\r\n      }\r\n      this.zoomMoveActionDebounced();\r\n    }\r\n\r\n    this.lastMoveTime = performance.now();\r\n  };\r\n\r\n  chainMouseDrag = (x, y) => {\r\n    if (this.props.tiles.chainLeaderId !== this.props.canvasId) {\r\n      if (this.props.isChained) {\r\n        this.ctx.translate(\r\n          x - this.state.dragStart.x,\r\n          y - this.state.dragStart.y\r\n        );\r\n      }\r\n    }\r\n  };\r\n\r\n  mouseEnter = () => {\r\n    this.setMountedState({ mouseOnCanvas: true });\r\n  };\r\n\r\n  mouseLeave = () => {\r\n    this.setMountedState({ mouseOnCanvas: false });\r\n  };\r\n\r\n  middleMousePos = () => {\r\n    let p1 = this.getPointInCanvas({ x: 0, y: 0 });\r\n    let p2 = this.getPointInCanvas({\r\n      x: this.canvas.width,\r\n      y: this.canvas.height,\r\n    });\r\n    let centerX = p1.x + (p2.x - p1.x) / 2;\r\n    let centerY = p1.y + (p2.y - p1.y) / 2;\r\n    this.mousePos = { x: centerX, y: centerY };\r\n  };\r\n\r\n  mouseup = () => {\r\n    // event\r\n    let p1 = this.getMousePositionInImage();\r\n    this.mousePos = p1;\r\n\r\n    // stop dragging the canvas\r\n    if (this.state.dragStart) {\r\n      this.setMountedState({ dragStart: null });\r\n      this.canvas.style.cursor = \"default\";\r\n    }\r\n\r\n    // stop dragging a roi\r\n    if (this.dragROI) {\r\n      this.dragROI.handleMouseUp();\r\n      this.dragROI = null;\r\n    }\r\n\r\n    if (this.tempChainToggle) {\r\n      this.tempChainToggle = false;\r\n      if (this.props.showFullscreen) {\r\n        // this.props.fsChain();\r\n        console.log(\"fsChain\");\r\n      } else {\r\n        this.props.onChangeChain(\r\n          true,\r\n          this.props.splitscreenIdx,\r\n          this.props.fileId\r\n        );\r\n      }\r\n    }\r\n\r\n    // update view\r\n    this.forceUpdate();\r\n  };\r\n\r\n  onScaleOnly = (event) => {\r\n    let delta = 0;\r\n\r\n    if (event.wheelDelta) {\r\n      /* IE/Opera. */\r\n      delta = -(event.wheelDelta / 120);\r\n    } else if (event.detail) {\r\n      /* Mozilla */\r\n      delta = event.detail / 3;\r\n    }\r\n\r\n    if (delta) {\r\n      // zoom in (1) or out (-1)\r\n      this.zoomDirection = delta < 0 ? 1 : -1;\r\n\r\n      // set destination scale value\r\n      let newZoom = this.getScale() * Math.pow(2, this.zoomDirection);\r\n\r\n      // max zoom out value\r\n      this.zoomValueOut = (0.75 * this.canvas.height) / this.vh;\r\n\r\n      if ((0.75 * this.canvas.width) / this.vw < this.zoomValueOut) {\r\n        this.zoomValueOut = (0.75 * this.canvas.width) / this.vw;\r\n      }\r\n\r\n      if (this.props.isActive === false && this.props.isChained) {\r\n        this.zoomValueOut = this.props.showFullscreen\r\n          ? this.props.rendererDict[\"Full\" + this.props.activeFileId]\r\n              .zoomValueOut\r\n          : this.props.rendererDict[this.props.activeFileId].zoomValueOut;\r\n      }\r\n\r\n      if (newZoom < this.zoomValueOut) {\r\n        newZoom = this.zoomValueOut;\r\n      }\r\n\r\n      // Limit maximum zoom in value\r\n      const maxZoomIn = 32;\r\n      newZoom = newZoom > maxZoomIn ? maxZoomIn : newZoom;\r\n\r\n      this.zoomTo = newZoom;\r\n      // redraw ui\r\n      this.forceUpdate();\r\n    }\r\n\r\n    // prevent other scroll actions\r\n    if (event.preventDefault) {\r\n      event.preventDefault();\r\n    }\r\n    event.returnValue = false;\r\n  };\r\n\r\n  mousewheel = (event) => {\r\n    // save zoom destination point\r\n    this.props.tiles.chainLeaderId = this.props.canvasId;\r\n    if (\r\n      this.state.initialized &&\r\n      !event.ctrlKey\r\n      // &&!this.props.resultTab.getZoomLevelFixed()\r\n    ) {\r\n      this.zoomPoint = {\r\n        x: this.lastX,\r\n        y: this.lastY, // - this.canvas.getBoundingClientRect().top,\r\n      };\r\n      this.onScaleOnly(event);\r\n    }\r\n\r\n    if (this.props.isChained) {\r\n      if (this.props.showFullscreen) {\r\n        for (const value of Object.values(this.props.splitscreenFileIds)) {\r\n          this.props.rendererDict[\"Full\" + value].chainMousewheel(\r\n            event,\r\n            this.zoomPoint\r\n          );\r\n        }\r\n      } else {\r\n        for (const value of Object.values(this.props.chainListFileIds)) {\r\n          this.props.rendererDict[value].chainMousewheel(event, this.zoomPoint);\r\n        }\r\n      }\r\n    }\r\n    event.preventDefault();\r\n  };\r\n\r\n  chainMousewheel = (event, leaderZoomPoint) => {\r\n    // save zoom destination point\r\n    if (this.props.tiles.chainLeaderId !== this.props.canvasId) {\r\n      if (this.props.isChained) {\r\n        if (\r\n          this.state.initialized &&\r\n          !event.ctrlKey &&\r\n          !event.shiftKey\r\n          // &&!this.props.resultTab.getZoomLevelFixed()\r\n        ) {\r\n          this.zoomPoint = leaderZoomPoint;\r\n          this.onScaleOnly(event);\r\n        }\r\n      }\r\n      event.preventDefault();\r\n    } else return;\r\n  };\r\n\r\n  miniMapZoom = (event, x, y) => {\r\n    this.props.tiles.chainLeaderId = this.props.canvasId;\r\n    if (\r\n      this.state.initialized &&\r\n      !event.ctrlKey\r\n      // &&!this.props.resultTab.getZoomLevelFixed()\r\n    ) {\r\n      let ctx = this.miniMapRef.getCtx();\r\n      let tpt = ctx.transformedPoint(x, y);\r\n      let pt = {\r\n        x: tpt.x * this.ctx.getTransform().a + this.ctx.getTransform().e,\r\n        y: tpt.y * this.ctx.getTransform().d + this.ctx.getTransform().f,\r\n      };\r\n      pt.x = Math.round(pt.x);\r\n      pt.y = Math.round(pt.y);\r\n      if (\r\n        pt.x < this.canvas.width &&\r\n        pt.x > 0 &&\r\n        pt.y < this.canvas.height &&\r\n        pt.y > 0\r\n      ) {\r\n        this.zoomPoint = pt;\r\n      } else {\r\n        return;\r\n      }\r\n      this.onScaleOnly(event);\r\n    }\r\n    if (this.props.isChained) {\r\n      let l = this.props.showFullscreen\r\n        ? this.props.splitscreenFileIds\r\n        : this.props.chainListFileIds;\r\n      for (const value of Object.values(l)) {\r\n        if (value !== this.props.fileId) {\r\n          let r = this.props.showFullscreen\r\n            ? this.props.rendererDict[\"Full\" + value]\r\n            : this.props.rendererDict[value];\r\n          let c = r.miniMapRef.getCtx();\r\n          let p = c.transformedPoint(x, y);\r\n          let pt = {\r\n            x: p.x * r.ctx.getTransform().a + r.ctx.getTransform().e,\r\n            y: p.y * r.ctx.getTransform().d + r.ctx.getTransform().f,\r\n          };\r\n          pt.x = Math.round(pt.x);\r\n          pt.y = Math.round(pt.y);\r\n          if (\r\n            pt.x < r.canvas.width &&\r\n            pt.x > 0 &&\r\n            pt.y < r.canvas.height &&\r\n            pt.y > 0\r\n          ) {\r\n            r.zoomPoint = pt;\r\n          } else {\r\n            return;\r\n          }\r\n          r.chainMousewheel(event, pt);\r\n        }\r\n      }\r\n    }\r\n    event.preventDefault();\r\n  };\r\n\r\n  // returns the current zoom scale\r\n  getScale = () => {\r\n    return this.ctx ? this.ctx.getTransform().a : 1;\r\n  };\r\n\r\n  // returns position of our image\r\n  getPosition = () => {\r\n    return {\r\n      x: -this.ctx.getTransform().e,\r\n      y: -this.ctx.getTransform().f,\r\n    };\r\n  };\r\n\r\n  // zoom out to show the whole image\r\n  zoomOut = () => {\r\n    // center image first\r\n    let pt = this.getPointInCanvas({\r\n      x: (this.canvas.width - this.vw) / 2,\r\n      y: (this.canvas.height - this.vh) / 2,\r\n    });\r\n    this.ctx.translate(pt.x, pt.y);\r\n    // calc our transformation offset\r\n    pt = this.getPointInCanvas({\r\n      x: this.canvas.width / 2,\r\n      y: this.canvas.height / 2,\r\n    });\r\n    // move to origin\r\n    this.ctx.translate(pt.x, pt.y);\r\n    // calc scale factor so we can fit the whole image on our screen\r\n    let factor = Math.min(\r\n      this.canvas.height / this.vh,\r\n      this.canvas.width / this.vw\r\n    );\r\n    // perform scaling\r\n    this.ctx.scale(factor, factor);\r\n    // restore our offset\r\n    this.ctx.translate(-pt.x, -pt.y);\r\n    // save initial scale into our state\r\n    this.setMountedState({\r\n      initialized: true,\r\n      initialScale: factor,\r\n    });\r\n    // this.props.resultTab.setRendererInitialized(true);\r\n  };\r\n\r\n  moveTo = (e) => {\r\n    // get curent position (center of screen) and transform into world coordinates\r\n    let pt = this.getPointInCanvas({\r\n      x: this.canvas.width / 2,\r\n      y: this.canvas.height / 2,\r\n    });\r\n    // translate by the offset to the destination point\r\n    this.ctx.translate(-(e.x - pt.x), -(e.y - pt.y));\r\n    // redraw screen\r\n    this.forceUpdate();\r\n    this.zoomMoveAction();\r\n  };\r\n\r\n  chainMoveTo = (x, y) => {\r\n    // get curent position (center of screen) and transform into world coordinates\r\n    let pt = this.getPointInCanvas({\r\n      x: this.canvas.width / 2,\r\n      y: this.canvas.height / 2,\r\n    });\r\n    // translate by the offset to the destination point\r\n    this.ctx.translate(-(x - pt.x), -(y - pt.y));\r\n    // redraw screen\r\n    this.forceUpdate();\r\n    this.zoomMoveAction();\r\n  };\r\n\r\n  chainMouseMove = (x, y, e) => {\r\n    if (this.props.isChained) {\r\n      if (this.props.showFullscreen) {\r\n        for (const value of Object.values(this.props.splitscreenFileIds)) {\r\n          if (value !== this.props.fileId) {\r\n            let ctx =\r\n              this.props.rendererDict[\"Full\" + value].miniMapRef.getCtx();\r\n            let pt = ctx.transformedPoint(x, y);\r\n            this.props.rendererDict[\"Full\" + value].chainMoveTo(pt.x, pt.y, e);\r\n          }\r\n        }\r\n      } else {\r\n        for (const value of Object.values(this.props.chainListFileIds)) {\r\n          if (value !== this.props.fileId) {\r\n            let ctx = this.props.rendererDict[value].miniMapRef.getCtx();\r\n            let pt = ctx.transformedPoint(x, y);\r\n            this.props.rendererDict[value].chainMoveTo(pt.x, pt.y, e);\r\n          }\r\n        }\r\n      }\r\n    }\r\n  };\r\n\r\n  pushColoredImage = (c, tileId, visImg) => {\r\n    let channel = this.props.histogramConfig.channels[c];\r\n    if (\r\n      (this.props.histogramConfig.channels.length < 2 &&\r\n        channel.color === \"#ffffff\") ||\r\n      channel.color === -1\r\n    ) {\r\n      // rgb channel\r\n      if (!this.props.tiles.getColoredImage(tileId)) {\r\n        let colImg = configureImage(visImg, channel);\r\n        this.props.tiles.pushColoredImages(colImg, tileId);\r\n        // this.pushRegTile(tileId, visImg, channel);\r\n      }\r\n    } else {\r\n      // colored images cache\r\n      if (!this.props.tiles.getColoredImage(tileId) && visImg.width > 0) {\r\n        let colImg = colorInImage(visImg, channel);\r\n        this.props.tiles.pushColoredImages(colImg, tileId);\r\n        // this.pushRegTile(tileId, visImg, channel);\r\n      }\r\n    }\r\n  };\r\n\r\n  loadAllTiles = () => {\r\n    for (let lv = 0; lv < Math.min(2, this.props.ome.maxLevel + 1); lv++) {\r\n      // calculate the number of grid columns for this level\r\n      let cols = Math.pow(2, lv);\r\n      for (let x = 0; x < cols; x++) {\r\n        for (let y = 0; y < cols; y++) {\r\n          for (let c = 0; c < this.props.ome.channels.length; c++) {\r\n            let page = this.getPageForChannel(c);\r\n            // load image first if missing\r\n            let tileId =\r\n              page + \",\" + lv + \",\" + x + \",\" + y + \",\" + this.props.fileId;\r\n            if (!this.props.tiles.getVisibleImage(tileId)) {\r\n              let visImg = new Image();\r\n              visImg.src = Backend.renderRegion({\r\n                id: this.props.fileId,\r\n                page: page,\r\n                lv: lv,\r\n                x: x,\r\n                y: y,\r\n              });\r\n              visImg.onload = () => {\r\n                this.pushColoredImage(c, tileId, visImg);\r\n                this.props.tiles.pushVisibleImage(visImg, tileId);\r\n                // set context width and height\r\n                this.props.tiles.setImgWidth(visImg.width);\r\n                this.props.tiles.setImgHeight(visImg.height);\r\n              };\r\n            } else if (this.props.tiles.getVisibleImage(tileId).complete) {\r\n              // set context width and height\r\n              let img = this.props.tiles.getVisibleImage(tileId);\r\n              this.props.tiles.setImgWidth(img.width);\r\n              this.props.tiles.setImgHeight(img.height);\r\n              this.pushColoredImage(\r\n                c,\r\n                tileId,\r\n                this.props.tiles.getVisibleImage(tileId)\r\n              );\r\n            }\r\n          }\r\n        }\r\n      }\r\n    }\r\n\r\n    this.preloadNextFrames();\r\n\r\n    // this.props.changeHiConfig(true);\r\n    this.props.tiles.setHistogramConfig(this.props.histogramConfig);\r\n  };\r\n\r\n  preloadNextFrames = () => {\r\n    if (this.state.playDirection > 0) {\r\n      for (\r\n        let t = this.state.t;\r\n        t <\r\n        Math.min(\r\n          this.props.ome.sizeT - 1,\r\n          this.state.t + this.state.bufferSize\r\n        );\r\n        t++\r\n      ) {\r\n        this.preloadFrame(this.state.z, t);\r\n      }\r\n    } else {\r\n      for (\r\n        let t = this.state.t;\r\n        t >= Math.max(0, this.state.t - this.state.bufferSize);\r\n        t--\r\n      ) {\r\n        this.preloadFrame(this.state.z, t);\r\n      }\r\n    }\r\n  };\r\n\r\n  preloadNextZFrames = () => {\r\n    if (this.state.playDirectionZ > 0) {\r\n      for (\r\n        let z = this.state.z;\r\n        z <\r\n        Math.min(\r\n          this.props.ome.sizeZ - 1,\r\n          this.state.z + this.state.bufferSize\r\n        );\r\n        z++\r\n      ) {\r\n        this.preloadFrame(z, this.state.t);\r\n      }\r\n    } else {\r\n      for (\r\n        let z = this.state.z;\r\n        z >= Math.max(0, this.state.z - this.state.bufferSize);\r\n        z--\r\n      ) {\r\n        this.preloadFrame(z, this.state.t);\r\n      }\r\n    }\r\n  };\r\n\r\n  preloadFrame = (z, t) => {\r\n    for (let lv = 0; lv < 1; lv++) {\r\n      // calculate the number of grid columns for this level\r\n      let cols = Math.pow(2, lv);\r\n      for (let x = 0; x < cols; x++) {\r\n        for (let y = 0; y < cols; y++) {\r\n          for (let c = 0; c < this.props.ome.channels.length; c++) {\r\n            let page = this.getPage(c, z, t);\r\n            // load image first if missing\r\n            let tileId =\r\n              page + \",\" + lv + \",\" + x + \",\" + y + \",\" + this.props.fileId;\r\n            if (!this.props.tiles.getVisibleImage(tileId)) {\r\n              let visImg = new Image();\r\n              visImg.src = Backend.renderRegion({\r\n                id: this.props.fileId,\r\n                page: page,\r\n                lv: lv,\r\n                x: x,\r\n                y: y,\r\n              });\r\n              visImg.onload = () => {\r\n                this.pushColoredImage(c, tileId, visImg);\r\n              };\r\n            } else if (this.props.tiles.getVisibleImage(tileId).complete) {\r\n              this.pushColoredImage(\r\n                c,\r\n                tileId,\r\n                this.props.tiles.getVisibleImage(tileId)\r\n              );\r\n            }\r\n          }\r\n        }\r\n      }\r\n    }\r\n  };\r\n\r\n  zoomToFactor = (factor) => {\r\n    let scaleTarget = this.state.initialScale * factor;\r\n    this.zoomTo = scaleTarget;\r\n    this.zoomPoint = { x: this.canvas.width / 2, y: this.canvas.height / 2 };\r\n    this.zoomDirection =\r\n      this.getScale() < scaleTarget ? scaleTarget : -scaleTarget;\r\n\r\n    setTimeout(() => this.forceUpdate(), 10);\r\n  };\r\n\r\n  zoomOriginal = () => {\r\n    this.zoomOneToN(1);\r\n  };\r\n\r\n  zoomOneToN = (x) => {\r\n    this.zoomTo = x;\r\n    this.zoomPoint = { x: this.canvas.width / 2, y: this.canvas.height / 2 };\r\n    this.zoomDirection = this.getScale() < x ? 1 : -1;\r\n\r\n    setTimeout(() => this.forceUpdate(), 10);\r\n  };\r\n\r\n  zoomDelta = (delta) => {\r\n    // zoom middle\r\n    this.zoomPoint = { x: this.canvas.width / 2, y: this.canvas.height / 2 };\r\n    // zoom in (1) or out (-1)\r\n    this.zoomDirection = delta < 0 ? 1 : -1;\r\n\r\n    // set destination scale value\r\n    let newZoom = this.getScale() * Math.pow(1.2, this.zoomDirection);\r\n\r\n    // max zoom out value\r\n    if (newZoom < (0.75 * this.canvas.height) / this.vh) {\r\n      newZoom = (0.75 * this.canvas.height) / this.vh;\r\n    }\r\n\r\n    // max zoom in value\r\n    if (newZoom > (2 * this.vh) / this.canvas.height) {\r\n      newZoom = (2 * this.vh) / this.canvas.height;\r\n    }\r\n\r\n    this.zoomTo = newZoom;\r\n\r\n    // redraw ui\r\n    this.forceUpdate();\r\n  };\r\n\r\n  zoomFit = () => {\r\n    this.canvasTranform(1, 0, 0, 1, 0, 0);\r\n    this.zoomOut();\r\n    this.zoomMoveActionDebounced(); //to save zoomObject\r\n  };\r\n\r\n  /**\r\n   * Performs a context.setTransform, whilst ensuring that the pixel\r\n   * representation is according to zoomlevel\r\n   * @param {*} a Horizontal scaling. A value of 1 results in no scaling.\r\n   * @param {*} b Vertical skewing.\r\n   * @param {*} c Horizontal skewing.\r\n   * @param {*} d Vertical scaling. A value of 1 results in no scaling.\r\n   * @param {*} e Horizontal translation (moving).\r\n   * @param {*} f Vertical translation (moving).\r\n   */\r\n  canvasTranform = (a, b, c, d, e, f) => {\r\n    // disable smoothing to see pixels of image\r\n    if (this.getScale() > 5) {\r\n      this.ctx.imageSmoothingEnabled = false;\r\n    } else {\r\n      this.ctx.imageSmoothingEnabled = true;\r\n    }\r\n    // Actual transformation\r\n    this.ctx.setTransform(a, b, c, d, e, f);\r\n  };\r\n\r\n  // triggered by moving or zooming\r\n  zoomMoveAction = () => {\r\n    const p1 = this.getPointInCanvas({ x: 0, y: 0 });\r\n    const p2 = this.getPointInCanvas({\r\n      x: this.canvas.width,\r\n      y: this.canvas.height,\r\n    });\r\n    // save current zoom and position for reload\r\n    const zoomObject = {\r\n      zoomRoi: true,\r\n      zoomLeft: p1.x,\r\n      zoomRight: p1.x + p2.x - p1.x,\r\n      zoomTop: p1.y,\r\n      zoomBottom: p1.y + p2.y - p1.y,\r\n    };\r\n    if (!this.props.showFullscreen) {\r\n      this.props.persistentStorage.save(\r\n        \"zoomObjectFV\" + this.props.fileId,\r\n        zoomObject\r\n      );\r\n    }\r\n  };\r\n\r\n  zoomMoveActionDebounced = debounce(this.zoomMoveAction, 100);\r\n\r\n  updateZ = (z, minZ = this.state.minZ, maxZ = this.state.maxZ) => {\r\n    this.setMountedState({ z: z, minZ: minZ, maxZ: maxZ });\r\n    this.props.updateGlobalZ(z, minZ, maxZ);\r\n  };\r\n\r\n  updateT = (t) => {\r\n    this.setMountedState({ t: t });\r\n    this.props.updateGlobalT(t);\r\n  };\r\n\r\n  drawVisibleImage = () => {\r\n    // calc deltatime for animations and fps\r\n    let t1 = performance.now();\r\n    let dt = t1 - this.t0;\r\n    this.t0 = t1;\r\n\r\n    // calc smoothed fps\r\n    this.lastFps.pop();\r\n    this.lastFps = [1000 / dt, ...this.lastFps];\r\n    this.fps = Math.round(\r\n      this.lastFps.reduce((acc, val) => (acc += val)) / this.lastFps.length\r\n    );\r\n    if (FPS) {\r\n      this.setMountedState({\r\n        fps: this.fps,\r\n      });\r\n    }\r\n\r\n    // time playback\r\n    if (this.state.playing) {\r\n      let newT =\r\n        this.state.t + (dt / 60000) * this.state.sr * this.state.playDirection;\r\n      if (newT >= this.props.ome.sizeT) {\r\n        newT = 0;\r\n      } else if (newT < 0) {\r\n        newT = this.props.ome.sizeT - 0.001;\r\n      }\r\n      this.updateT(newT);\r\n      this.preloadNextFrames();\r\n    }\r\n\r\n    // time playback\r\n    if (this.state.playingZ) {\r\n      let newZ =\r\n        this.state.z +\r\n        (dt / 60000) * this.state.zsr * this.state.playDirectionZ;\r\n      if (newZ > this.props.ome.sizeZ - 1) {\r\n        newZ = 0;\r\n      } else if (newZ < 0) {\r\n        newZ = this.props.ome.sizeZ - 1;\r\n      } else {\r\n        newZ = newZ < 0 ? this.props.ome.sizeZ - 1 : newZ;\r\n      }\r\n      this.updateZ(newZ);\r\n      this.preloadNextZFrames();\r\n    }\r\n\r\n    // nothing to draw if we haven't loaded our meta data yet\r\n    if ((!this.props.ome || !this.canvas) && this.keepRendering) {\r\n      // request next animation frame\r\n      requestAnimationFrame(() => this.draw());\r\n      return;\r\n    }\r\n\r\n    // call the initialization if the viewer is not initalized yet\r\n    if (!this.state.initialized) {\r\n      // do we have our top region already loaded? (then -> this.vw is greater 0)\r\n      if (this.imgLoaded && this.imgRegistered) {\r\n        // do initial placement\r\n        this.zoomOut();\r\n      } else {\r\n        this.loadAllTiles();\r\n      }\r\n    }\r\n\r\n    // only set z once\r\n    if (!this.state.initializedZ) {\r\n      let z = this.props.persistentStorage.load(\"z\");\r\n      if (typeof z === \"undefined\") {\r\n        z = Math.floor(this.props.ome.sizeZ / 2);\r\n      }\r\n      let minZ = this.props.persistentStorage.load(\"minZ\");\r\n      if (typeof minZ === \"undefined\") {\r\n        minZ = 0;\r\n      }\r\n      let maxZ = this.props.persistentStorage.load(\"maxZ\");\r\n      if (typeof maxZ === \"undefined\") {\r\n        maxZ = this.props.ome.sizeZ - 1;\r\n      }\r\n      this.updateZ(z, minZ, maxZ);\r\n      this.props.tiles.setZLevel(Math.floor(this.props.ome.sizeZ / 2));\r\n      this.setMountedState({\r\n        minZ,\r\n        maxZ,\r\n        initializedZ: true,\r\n      });\r\n    }\r\n\r\n    if (this.zoomTo) {\r\n      if (typeof this.zoomPoint === \"undefined\") {\r\n        this.zoomPoint = { x: this.lastX, y: this.lastY };\r\n      }\r\n      if (this.zoomDirection > 0 && this.getScale() < this.zoomTo) {\r\n        // zoom in\r\n        // calc our transformation offset\r\n        let pt = this.getPointInCanvas({\r\n          x: this.zoomPoint.x,\r\n          y: this.zoomPoint.y,\r\n        });\r\n\r\n        this.ctx.translate(pt.x, pt.y);\r\n        // calc scale factor (zoom per second)\r\n        let factor = Math.pow(20, 40 / 1000);\r\n        // perform scaling\r\n        this.ctx.scale(factor, factor);\r\n        if (this.getScale() > this.zoomTo) {\r\n          this.canvasTranform(\r\n            this.zoomTo,\r\n            this.ctx.getTransform().b,\r\n            this.ctx.getTransform().c,\r\n            this.zoomTo,\r\n            this.ctx.getTransform().e,\r\n            this.ctx.getTransform().f\r\n          );\r\n        }\r\n        // restore our offset\r\n        this.ctx.translate(-pt.x, -pt.y);\r\n        // update screen, update scalebar etc\r\n        // this.updatePreviewRect(this.props.activeTool);\r\n        this.zoomMoveActionDebounced();\r\n      } else if (this.zoomDirection < 0 && this.getScale() > this.zoomTo) {\r\n        // zoom out\r\n        // calc our transformation offset\r\n        let pt = this.getPointInCanvas({\r\n          x: this.zoomPoint.x,\r\n          y: this.zoomPoint.y,\r\n        });\r\n        this.ctx.translate(pt.x, pt.y);\r\n        // calc scale factor (zoom per second)\r\n        let factor = Math.pow(20, -40 / 1000);\r\n        // perform scaling\r\n        this.ctx.scale(factor, factor);\r\n\r\n        if (this.getScale() < this.zoomTo) {\r\n          this.canvasTranform(\r\n            this.zoomTo,\r\n            this.ctx.getTransform().b,\r\n            this.ctx.getTransform().c,\r\n            this.zoomTo,\r\n            this.ctx.getTransform().e,\r\n            this.ctx.getTransform().f\r\n          );\r\n        }\r\n        // restore our offset\r\n        this.ctx.translate(-pt.x, -pt.y);\r\n        // update screen, update scalebar etc\r\n\r\n        // this.updatePreviewRect(this.props.activeTool);\r\n        this.zoomMoveActionDebounced();\r\n      } else {\r\n        // we reached the destination zoom level\r\n        this.zoomTo = null;\r\n      }\r\n    }\r\n\r\n    // get world size from ome metadata\r\n    this.vw = this.props.ome.sizeX;\r\n    this.vh = this.props.ome.sizeY;\r\n\r\n    // Clear the entire canvas\r\n    let p1 = this.getPointInCanvas({ x: 0, y: 0 });\r\n    let p2 = this.getPointInCanvas({\r\n      x: this.canvas.width,\r\n      y: this.canvas.height,\r\n    });\r\n    this.ctx.clearRect(p1.x, p1.y, p2.x - p1.x, p2.y - p1.y);\r\n    this.ctx.save();\r\n    this.canvasTranform(1, 0, 0, 1, 0, 0);\r\n    this.ctx.clearRect(0, 0, this.canvas.width, this.canvas.height);\r\n    this.ctx.restore();\r\n\r\n    this.ctx.fillStyle = \"#000\";\r\n    this.ctx.fillRect(0, 0, this.vw, this.vh);\r\n\r\n    // get pyramid level based on scaling\r\n    this.level = getBaseLog(2, (this.getScale() / this.state.initialScale) * 2);\r\n    // clip our level at lower bound\r\n    if (this.level < 0 || this.level === Infinity) {\r\n      this.level = 0;\r\n    }\r\n    // clip our level at upper bound\r\n    if (this.level > this.props.ome.maxLevel) {\r\n      this.level = this.props.ome.maxLevel;\r\n    }\r\n\r\n    let lv = Math.floor(this.level);\r\n\r\n    // calculate the number of grid columns for this level\r\n    let cols = Math.pow(2, lv);\r\n\r\n    // get visbile column indices\r\n    let visX = [];\r\n    for (let i = 0; i < cols; i++) {\r\n      if (\r\n        this.getPosition().x / this.getScale() < this.vw * ((i + 1) / cols) &&\r\n        (this.getPosition().x + this.canvas.width) / this.getScale() >\r\n          this.vw * (i / cols)\r\n      ) {\r\n        visX.push(i);\r\n      }\r\n    }\r\n    // out of bounds, add first region\r\n    if (visX.length === 0) visX.push(0);\r\n\r\n    // get visbile row indices\r\n    let visY = [];\r\n    for (let i = 0; i < cols; i++) {\r\n      if (\r\n        this.getPosition().y / this.getScale() < this.vh * ((i + 1) / cols) &&\r\n        (this.getPosition().y + this.canvas.height) / this.getScale() >\r\n          this.vh * (i / cols)\r\n      ) {\r\n        visY.push(i);\r\n      }\r\n    }\r\n    // out of bounds, add first region\r\n    if (visY.length === 0) visY.push(0);\r\n\r\n    for (let x of visX) {\r\n      for (let y of visY) {\r\n        //let page = this.getPage();\r\n        //for(let page = 0; page < this.props.histogramConfig.channels.length; page++) {\r\n        for (let c = 0; c < this.props.histogramConfig.channels.length; c++) {\r\n          let page = this.getPageForChannel(c);\r\n          let channel = this.props.histogramConfig.channels[c];\r\n\r\n          // skip disabled channels\r\n          if (!channel.enabled) continue;\r\n          // file +tile id im string\r\n          // load image first if missing\r\n          let tileId =\r\n            page + \",\" + lv + \",\" + x + \",\" + y + \",\" + this.props.fileId;\r\n          if (\r\n            this.zoomTo == null &&\r\n            !this.props.tiles.getVisibleImage(tileId) &&\r\n            !this.state.isLoadingTiles &&\r\n            !this.props.changingFile\r\n            /// TODO: Commented out to fix splitscreen, why has it been added originally?\r\n            //&& this.props.tiles.getFileId() === this.props.fileId\r\n          ) {\r\n            let visImg = new Image();\r\n            visImg.src = Backend.renderRegion({\r\n              id: this.props.fileId,\r\n              page: page,\r\n              lv: lv,\r\n              x: x,\r\n              y: y,\r\n            });\r\n            this.props.tiles.pushVisibleImage(visImg, tileId);\r\n          }\r\n\r\n          let img = this.props.tiles.getVisibleImage(tileId);\r\n          this.imgLoaded = img && img.complete;\r\n          // see https://developer.mozilla.org/en-US/docs/Web/API/CanvasRenderingContext2D/globalCompositeOperation\r\n          const compositionModeFluor = \"screen\";\r\n          const compositionModeBrightfield = \"lighter\";\r\n          if (this.imgLoaded && this.imgRegistered) {\r\n            // image is loaded -> draw it\r\n            this.pushColoredImage(c, tileId, img);\r\n\r\n            if (\r\n              tileId.includes(this.props.activeFileId) &&\r\n              (this.props.tiles.getImgWidth() !== img.width ||\r\n                this.props.tiles.getImgHeight() !== img.height)\r\n            ) {\r\n              // set context width and height (for splitscreen and gallery)\r\n              this.props.tiles.setImgWidth(img.width);\r\n              this.props.tiles.setImgHeight(img.height);\r\n            }\r\n\r\n            // composition should be screen for fluorescence\r\n            if (this.props.ome.channels[c].type === \"fluorescence\") {\r\n              this.ctx.globalCompositeOperation = compositionModeFluor;\r\n            } else {\r\n              this.ctx.globalCompositeOperation = compositionModeBrightfield;\r\n            }\r\n            if (\r\n              Object.prototype.toString.call(\r\n                this.props.tiles.getColoredImage(tileId)\r\n              ) === \"[object HTMLCanvasElement]\" &&\r\n              this.props.tiles.getColoredImage(tileId)\r\n            ) {\r\n              // draw colored image layer\r\n              this.ctx.drawImage(\r\n                this.props.tiles.getColoredImage(tileId),\r\n                (x * this.vw) / cols,\r\n                (y * this.vh) / cols,\r\n                this.vw / cols,\r\n                this.vh / cols\r\n              );\r\n            }\r\n          } else {\r\n            // draw image of previus pyramid level instead\r\n            let factor = 1;\r\n            let parentlv = lv;\r\n            while (parentlv > 0) {\r\n              parentlv--;\r\n              factor *= 2;\r\n              // get id of that image\r\n              tileId =\r\n                page +\r\n                \",\" +\r\n                parentlv +\r\n                \",\" +\r\n                Math.floor(x / factor) +\r\n                \",\" +\r\n                Math.floor(y / factor) +\r\n                \",\" +\r\n                this.props.fileId;\r\n\r\n              // image is loaded -> draw it\r\n              let imgOld = this.props.tiles.getVisibleImage(tileId);\r\n\r\n              if (imgOld && imgOld.complete) {\r\n                this.pushColoredImage(c, tileId, imgOld);\r\n\r\n                // composition should be screen for fluorescence\r\n                // see https://developer.mozilla.org/en-US/docs/Web/API/CanvasRenderingContext2D/globalCompositeOperation\r\n                this.ctx.globalCompositeOperation = compositionModeFluor;\r\n                // draw colored image layer\r\n                if (this.props.tiles.getColoredImage(tileId)) {\r\n                  this.ctx.drawImage(\r\n                    this.props.tiles.getColoredImage(tileId),\r\n                    ((x % factor) * imgOld.width) / factor,\r\n                    ((y % factor) * imgOld.height) / factor,\r\n                    imgOld.width / factor,\r\n                    imgOld.height / factor,\r\n                    (x * this.vw) / cols,\r\n                    (y * this.vh) / cols,\r\n                    this.vw / cols,\r\n                    this.vh / cols\r\n                  );\r\n                }\r\n                break;\r\n              }\r\n            }\r\n          }\r\n        }\r\n      }\r\n    }\r\n    // back to default overlay composition operation\r\n    // see https://developer.mozilla.org/en-US/docs/Web/API/CanvasRenderingContext2D/globalCompositeOperation\r\n    this.ctx.globalCompositeOperation = \"source-over\";\r\n  };\r\n\r\n  draw = () => {\r\n    this.drawVisibleImage();\r\n\r\n    let p2 = this.getPointInCanvas({\r\n      x: this.canvas.width,\r\n      y: this.canvas.height,\r\n    });\r\n\r\n    this.ctx.globalAlpha = 1.0;\r\n    // draw scale bar\r\n    if (this.state.showScaleBar && this.state.scaleBarData) {\r\n      this.ctx.beginPath();\r\n      this.ctx.strokeStyle = this.state.isBrightfield ? \"black\" : \"white\";\r\n      const scaleFactor = 1 / this.ctx.getTransform().a;\r\n      this.ctx.lineWidth = 3 * scaleFactor;\r\n      const marginRight = 5 * scaleFactor;\r\n      const marginBottom = 14 * scaleFactor;\r\n      const scaleWidth = (this.state.scaleBarData.width - 2) * scaleFactor;\r\n      const stopLineHeight = 16 * scaleFactor;\r\n      const maxScaleWidth = this.state.scaleBarData.maxScaleWidth * scaleFactor;\r\n      const delta = {\r\n        x: this.state.scaleBarData.x * scaleFactor,\r\n        y: this.state.scaleBarData.y * scaleFactor,\r\n      };\r\n      const center = {\r\n        x: p2.x - marginRight - maxScaleWidth / 2 + delta.x,\r\n        y: p2.y - marginBottom + delta.y,\r\n      };\r\n      this.ctx.moveTo(center.x - scaleWidth / 2, center.y);\r\n      this.ctx.lineTo(center.x - scaleWidth / 2, center.y - stopLineHeight / 2);\r\n      this.ctx.lineTo(center.x - scaleWidth / 2, center.y + stopLineHeight / 2);\r\n      this.ctx.lineTo(center.x - scaleWidth / 2, center.y);\r\n      this.ctx.lineTo(center.x + scaleWidth / 2, center.y);\r\n      this.ctx.lineTo(center.x + scaleWidth / 2, center.y - stopLineHeight / 2);\r\n      this.ctx.lineTo(center.x + scaleWidth / 2, center.y + stopLineHeight / 2);\r\n      this.ctx.stroke();\r\n\r\n      const fontSize = 14 * scaleFactor;\r\n      const fontMargin = 6 * scaleFactor;\r\n      this.ctx.fillStyle = this.state.isBrightfield ? \"black\" : \"white\";\r\n      this.ctx.font = \"bold \" + fontSize + \"px Arial\";\r\n      this.ctx.globalAlpha = 1.0;\r\n      this.ctx.textAlign = \"center\";\r\n      this.ctx.textBaseline = \"bottom\";\r\n      this.ctx.fillText(\r\n        this.state.scaleBarData.label,\r\n        center.x,\r\n        center.y - fontMargin\r\n      );\r\n    }\r\n\r\n    // check if tiles are still loading from server\r\n    let isLoadingTiles = false;\r\n    for (let tileId in this.props.tiles.getVisibleImages()) {\r\n      if (this.props.tiles.getVisibleImage(tileId).complete === false) {\r\n        isLoadingTiles = true;\r\n        break;\r\n      }\r\n    }\r\n    if (isLoadingTiles !== this.state.isLoadingTiles) {\r\n      let nowTime = performance.now();\r\n      this.setMountedState(\r\n        {\r\n          isLoadingTiles: isLoadingTiles,\r\n          nowTime: nowTime,\r\n        },\r\n        () => {}\r\n      );\r\n    }\r\n\r\n    // request next animation frame\r\n    if (this.keepRendering) {\r\n      requestAnimationFrame(() => this.draw());\r\n    }\r\n  };\r\n\r\n  setZoomLevelForGridSize = (gridSize) => {\r\n    // make initial zoomlevel\r\n    this.zoomFit();\r\n    // zoom in that tile is size of viewer\r\n    this.ctx.scale(gridSize, gridSize);\r\n  };\r\n\r\n  updateFLChannels = (e) => {\r\n    this.props.tiles.setHistogramConfig(e);\r\n\r\n    this.setMountedState({ histogramConfig: e });\r\n\r\n    // invalidate all cached coloring images\r\n    this.props.tiles.setColoredImages([]);\r\n\r\n    this.loadAllTiles();\r\n  };\r\n\r\n  onPlayPause = (e, dir) => {\r\n    this.setMountedState({ playing: e, playingZ: false, playDirection: dir });\r\n  };\r\n\r\n  onPlayPauseZ = (e, dir) => {\r\n    this.setMountedState({ playingZ: e, playing: false, playDirectionZ: dir });\r\n  };\r\n\r\n  onSeek = (e, v) => {\r\n    this.updateT(v);\r\n  };\r\n\r\n  onChangeT = (e) => {\r\n    this.updateT(e);\r\n  };\r\n\r\n  onChangeZValue = (z, minZ = this.state.minZ, maxZ = this.state.maxZ) => {\r\n    this.updateZ(z, minZ, maxZ);\r\n    this.props.tiles.setZLevel(z);\r\n    this.props.persistentStorage.save(\"z\", z); //remember for use after project reload or reopen\r\n    this.props.persistentStorage.save(\"minZ\", minZ); //remember for use after project reload or reopen\r\n    this.props.persistentStorage.save(\"maxZ\", maxZ); //remember for use after project reload or reopen\r\n  };\r\n\r\n  onChangeZ = (e, v) => {\r\n    let minZ = v[0];\r\n    let z = v[1];\r\n    let maxZ = v[2];\r\n    this.onChangeZValue(z, minZ, maxZ);\r\n  };\r\n\r\n  onChangeSr = (e) => {\r\n    this.setMountedState({ sr: e });\r\n  };\r\n\r\n  onChangeZSr = (e) => {\r\n    this.setMountedState({ zsr: e });\r\n  };\r\n\r\n  onStep = (e) => {\r\n    this.updateT(\r\n      Math.min(this.props.ome.sizeT - 1, Math.max(0, this.state.t + e))\r\n    );\r\n  };\r\n\r\n  onStepZ = (e) => {\r\n    let zLevel = Math.min(\r\n      this.props.ome.sizeZ - 1,\r\n      Math.max(0, this.state.z + e)\r\n    );\r\n    this.onChangeZValue(zLevel);\r\n  };\r\n\r\n  onToggle = (key) => {\r\n    let keyExtender = key.startsWith(\"show\") ? \"\" : this.props.fileId;\r\n    //e.g. \"showMiniMap\", true\r\n    if (this.props.showFullscreen) {\r\n      this.props.persistentStorage.save(\r\n        key + \"Full\" + keyExtender,\r\n        !this.state[key]\r\n      );\r\n    } else {\r\n      this.props.persistentStorage.save(key + keyExtender, !this.state[key]);\r\n    }\r\n    this.setMountedState({ [key]: !this.state[key] });\r\n  };\r\n\r\n  getLayoutElement = (key) => {\r\n    //used to get e.g. \"showMiniMap\" via rendererRef\r\n    return this.state[key];\r\n  };\r\n\r\n  checkMiniMapVisivility = () => {\r\n    const { hideMiniMap, showMiniMap } = this.state;\r\n    const hideMiniMapThresholdWidth = 600;\r\n    const hideMiniMapThresholdHeight = 400;\r\n    const hideRestrictions =\r\n      this.canvas.width < hideMiniMapThresholdWidth ||\r\n      this.canvas.height < hideMiniMapThresholdHeight;\r\n    let saveString = \"hideMiniMap\"; // + this.props.fileId;\r\n    if (this.props.showFullscreen) {\r\n      saveString = \"hideMiniMapFull\"; // + this.props.fileId;\r\n    }\r\n    if (hideRestrictions && !hideMiniMap && showMiniMap) {\r\n      this.props.persistentStorage.save(saveString, true);\r\n      this.onToggle(\"showMiniMap\");\r\n      this.setMountedState({ hideMiniMap: true });\r\n    } else if (!hideRestrictions && hideMiniMap && !showMiniMap) {\r\n      this.props.persistentStorage.save(saveString, false);\r\n      this.onToggle(\"showMiniMap\");\r\n      this.setMountedState({ hideMiniMap: false });\r\n    } else if (!hideRestrictions && hideMiniMap && showMiniMap) {\r\n      this.props.persistentStorage.save(saveString, false);\r\n      this.setMountedState({ hideMiniMap: false });\r\n    }\r\n  };\r\n\r\n  render = () => {\r\n    const { classes, fileId, ome } = this.props; //showTimeBar project\r\n\r\n    const {\r\n      miniMapKey,\r\n      scaleBarData,\r\n      open,\r\n      anchorEl,\r\n      displayZStackBar,\r\n      showMiniMap,\r\n      showScaleBar,\r\n      showZStackBar,\r\n      showImageInfo,\r\n      showZoomBar,\r\n      showFileNavButtons,\r\n    } = this.state;\r\n\r\n    return (\r\n      <div className={classes.root} ref={(el) => (this.container = el)}>\r\n        <Popper\r\n          open={open}\r\n          anchorEl={anchorEl}\r\n          placement=\"left-start\"\r\n          transition\r\n        >\r\n          {({ TransitionProps }) => (\r\n            <Fade {...TransitionProps} timeout={350}>\r\n              <Paper\r\n                style={{\r\n                  position: \"absolute\",\r\n                  top: 5,\r\n                  right: 0,\r\n                }}\r\n              >\r\n                <ToggleButton\r\n                  classes={classes}\r\n                  title={\"Toggle Navigator\"}\r\n                  name={\"showMiniMap\"}\r\n                  value={showMiniMap}\r\n                  icon={\"MapIcon\"}\r\n                  onToggle={this.onToggle}\r\n                />\r\n                {ome && typeof ome.physicalSizeX !== \"undefined\" && (\r\n                  <ToggleButton\r\n                    classes={classes}\r\n                    title={\"Toggle scalebar\"}\r\n                    name={\"showScaleBar\"}\r\n                    value={showScaleBar}\r\n                    icon={\"faRuler\"}\r\n                    onToggle={this.onToggle}\r\n                  />\r\n                )}\r\n\r\n                {displayZStackBar && (\r\n                  <ToggleButton\r\n                    classes={classes}\r\n                    title={\"Toggle Z-stack\"}\r\n                    name={\"showZStackBar\"}\r\n                    value={showZStackBar}\r\n                    icon={\"faLayerGroup\"}\r\n                    onToggle={this.onToggle}\r\n                  />\r\n                )}\r\n                <ToggleButton\r\n                  classes={classes}\r\n                  title={\"Toggle image info\"}\r\n                  name={\"showImageInfo\"}\r\n                  value={showImageInfo}\r\n                  icon={\"faInfo\"}\r\n                  onToggle={this.onToggle}\r\n                />\r\n                {\r\n                  <ToggleButton\r\n                    classes={classes}\r\n                    title={\"Toggle zoom info bar\"}\r\n                    name={\"showZoomBar\"}\r\n                    value={showZoomBar}\r\n                    icon={\"LinearScaleIcon\"}\r\n                    onToggle={this.onToggle}\r\n                  />\r\n                }\r\n              </Paper>\r\n            </Fade>\r\n          )}\r\n        </Popper>\r\n\r\n        {this.props.splitscreenCount !== 1 && !this.props.showFullscreen && (\r\n          <Tooltip disableInteractive title=\"Adjust layout\">\r\n            <IconButton\r\n              className={\r\n                this.props.splitscreenCount === 1\r\n                  ? classes.toolbarButtonRootSingle\r\n                  : classes.toolbarButtonRoot\r\n              }\r\n              size=\"small\"\r\n              onClick={(e) =>\r\n                this.setMountedState({\r\n                  open: !this.state.open,\r\n                  anchorEl: e.target,\r\n                })\r\n              }\r\n            >\r\n              <ViewQuilt />\r\n            </IconButton>\r\n          </Tooltip>\r\n        )}\r\n        <canvas\r\n          id={this.props.canvasId}\r\n          className={classes.canvas}\r\n          style={{\r\n            height: \"100%\",\r\n            userSelect: \"none\",\r\n          }}\r\n          onContextMenu={(event) => event.preventDefault()}\r\n          onMouseDown={this.mousedown}\r\n          onMouseEnter={this.mouseEnter}\r\n          onMouseLeave={this.mouseLeave}\r\n        />\r\n        {this.state.isLoadingTiles && (\r\n          <LinearProgress\r\n            style={{\r\n              position: \"fixed\",\r\n              top: 64,\r\n              left: 0,\r\n              right: this.props.rightSpace,\r\n            }}\r\n          />\r\n        )}\r\n        {FPS && (\r\n          <p style={{ color: \"#0673C1\" }} className={classes.fps}>\r\n            {this.state.fps + \" FPS\"}\r\n          </p>\r\n        )}\r\n        {!this.state.initialized && (\r\n          <CircularProgress className={classes.progress} />\r\n        )}\r\n        {this.state.initialized && showMiniMap && (\r\n          // !this.props.resultTab.getZoomLevelFixed() &&\r\n          <MiniMap\r\n            componentRef={(c) => (this.miniMapRef = c)}\r\n            fileId={fileId}\r\n            key={miniMapKey}\r\n            pointerEvents={\r\n              !(\r\n                (this.canvas.style.cursor !== \"default\")\r\n                // ||\r\n                // this.props.drawLayer.regionRois.length > 0\r\n              )\r\n            }\r\n            ome={this.props.ome}\r\n            histogramConfig={this.props.histogramConfig}\r\n            visibleImage={this.props.tiles.getVisibleImages()}\r\n            coloredImages={this.props.tiles.getColoredImages()}\r\n            position={this.getPosition()}\r\n            zoom={this.getScale()}\r\n            canvas={this.canvas}\r\n            canvasId={this.props.canvasId}\r\n            onMoveTo={this.moveTo}\r\n            onScaleOnly={this.onScaleOnly}\r\n            getPageForChannel={this.getPageForChannel}\r\n            chainMouseMove={this.chainMouseMove}\r\n            zoomMouseWheel={this.miniMapZoom}\r\n          />\r\n        )}\r\n\r\n        {this.state.initialized && showZoomBar && (\r\n          <ZoomBar\r\n            key={fileId + \"ZoomBar\"}\r\n            zoom={this.getScale() / this.state.initialScale}\r\n            changeValue={(v) => this.zoomToFactor(v)}\r\n            clickable={true}\r\n          />\r\n        )}\r\n        {this.state.initialized && showScaleBar && (\r\n          <ScaleBar\r\n            key={fileId + \"ScaleBar\"}\r\n            pointerEvents={!(this.canvas.style.cursor !== \"default\")}\r\n            zoom={this.getScale()}\r\n            ome={this.props.ome}\r\n            setScaleBarData={(data) => {\r\n              if (\r\n                scaleBarData === null ||\r\n                scaleBarData.width !== data.width ||\r\n                scaleBarData.label !== data.label ||\r\n                scaleBarData.x !== data.x ||\r\n                scaleBarData.y !== data.y\r\n              ) {\r\n                this.setMountedState({ scaleBarData: data });\r\n              }\r\n            }}\r\n          />\r\n        )}\r\n        {this.state.initialized && showZStackBar && this.props.ome.sizeZ > 1 && (\r\n          <ZStackBar\r\n            key={fileId + \"ZStackBar\"}\r\n            pointerEvents={\r\n              !(\r\n                (this.canvas.style.cursor !== \"default\")\r\n                // ||\r\n                // this.props.drawLayer.regionRois.length > 0\r\n              )\r\n            }\r\n            z={this.state.z}\r\n            minZ={this.state.minZ}\r\n            maxZ={this.state.maxZ}\r\n            playing={this.state.playingZ}\r\n            onPlayPause={this.onPlayPauseZ}\r\n            zsr={this.state.zsr}\r\n            onChangeZ={this.onChangeZ}\r\n            onChangeZValue={this.onChangeZValue}\r\n            onChangeZSr={this.onChangeZSr}\r\n            playDirection={this.state.playDirectionZ}\r\n            ome={this.props.ome}\r\n            onStep={this.onStepZ}\r\n          />\r\n        )}\r\n        {this.state.initialized && showImageInfo && (\r\n          <ImageInfo ome={this.props.ome} />\r\n        )}\r\n        {showFileNavButtons && (\r\n          <React.Fragment>\r\n            <div className={classes.fileNavLeftBtn}>\r\n              <Tooltip\r\n                disableInteractive\r\n                placement=\"top\"\r\n                followCursor\r\n                title=\"Open previous file [Ctrl] + [<=]\"\r\n              >\r\n                <span>\r\n                  <IconButton\r\n                    disabled={true}\r\n                    onClick={() => {\r\n                      this.props.openPrevFile();\r\n                    }}\r\n                  >\r\n                    <KeyboardArrowLeftIcon />\r\n                  </IconButton>\r\n                </span>\r\n              </Tooltip>\r\n            </div>\r\n\r\n            <div className={classes.fileNavRightBtn}>\r\n              <Tooltip\r\n                disableInteractive\r\n                placement=\"top\"\r\n                followCursor\r\n                title=\"Open previous file [Ctrl] + [=>]\"\r\n              >\r\n                <span>\r\n                  <IconButton disabled={true} onClick={this.props.openNextFile}>\r\n                    <KeyboardArrowRightIcon />\r\n                  </IconButton>\r\n                </span>\r\n              </Tooltip>\r\n            </div>\r\n          </React.Fragment>\r\n        )}\r\n      </div>\r\n    );\r\n  };\r\n}\r\n\r\n// define the component's interface\r\nRenderer.propTypes = {\r\n  activeFileId: PropTypes.string,\r\n  canvasId: PropTypes.string,\r\n  chainListFileIds: PropTypes.object,\r\n  changingFile: PropTypes.bool,\r\n  classes: PropTypes.object.isRequired,\r\n  componentRef: PropTypes.func,\r\n  displayTimeBar: PropTypes.bool,\r\n  displayZStackBar: PropTypes.bool,\r\n  fileId: PropTypes.string,\r\n  histogramConfig: PropTypes.object,\r\n  isActive: PropTypes.bool,\r\n  isChained: PropTypes.bool,\r\n  ome: PropTypes.object,\r\n  onChangeChain: PropTypes.func,\r\n  onSelectFile: PropTypes.func,\r\n  openNextFile: PropTypes.func,\r\n  openPrevFile: PropTypes.func,\r\n  persistentStorage: PropTypes.object,\r\n  rendererDict: PropTypes.object,\r\n  rightSpace: PropTypes.number,\r\n  showFullscreen: PropTypes.bool,\r\n  showZStackBar: PropTypes.bool,\r\n  splitscreenCount: PropTypes.number,\r\n  splitscreenFileIds: PropTypes.array,\r\n  splitscreenIdx: PropTypes.number,\r\n  tiles: PropTypes.object,\r\n  tzoomROI1: PropTypes.func,\r\n  updateGlobalT: PropTypes.func,\r\n  updateGlobalZ: PropTypes.func,\r\n  zoomBottom: PropTypes.number,\r\n  zoomLeft: PropTypes.number,\r\n  zoomROI: PropTypes.bool,\r\n  zoomRight: PropTypes.number,\r\n  zoomTop: PropTypes.number,\r\n  getMousePosition: PropTypes.func,\r\n};\r\n\r\nexport default withPersistentStorage(\r\n  withTiles(withResultTab(withStyles(styles)(Renderer)))\r\n);\r\n","// Framework imports\r\nimport React, { useContext, useEffect, useState } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\n// External packages\r\n// import { Grid } from \"@mui/material\";\r\n\r\n// HSA Imports\r\nimport { FileViewerContext } from \"./FileViewer\";\r\nimport Backend from \"../common/utils/Backend\";\r\nimport Renderer from \"./Renderer\";\r\n\r\n/**\r\n * Collected (reusable) styles for page elements.\r\n */\r\n// const styles = {\r\n//   root: {\r\n//     height: \"100%\",\r\n//     display: \"grid\",\r\n//     borderRight: \"5px solid  #EBEBEB\",\r\n//     justifyContent: \"center\",\r\n//     textAlign: \"center\",\r\n//     background: \"#fff\",\r\n//   },\r\n//   img: {\r\n//     with: \"800px\",\r\n//     height: \"600px\",\r\n//   },\r\n// };\r\n\r\n/**\r\n * Element containing all visualisations of all audio files / streams in a project.\r\n */\r\nexport default function FileRenderer(props) {\r\n  const fileViewer = useContext(FileViewerContext);\r\n  const [histogramConfigs, setHistogramConfigs] = useState({}); //\r\n  const [omeDict, setOmeDict] = useState(null);\r\n\r\n  let isChained = false;\r\n  let showZStackBar = false;\r\n  let displayZStackBar = false;\r\n  let displayTimeBar = false;\r\n  let showFullscreen = false;\r\n  let zoomROI = false;\r\n  let changingFile = false;\r\n  let chainListFileIds = {};\r\n  let rendererDict = {};\r\n\r\n  //triggers on new Selected File\r\n  useEffect(() => {\r\n    if (!props.currentFileId) return;\r\n    Backend.loadImage(\r\n      { id: props.currentFileId },\r\n      (ome) => {\r\n        if (!ome.fileName) return;\r\n        showZStackBar = ome.sizeZ > 1;\r\n        displayTimeBar = ome.sizeT > 1;\r\n        displayZStackBar = ome.sizeZ > 1;\r\n\r\n        setOmeDict({\r\n          ...omeDict,\r\n          [props.currentFileId]: ome,\r\n        });\r\n      },\r\n      (err) => window.openErrorDialog(err),\r\n      () => {}\r\n    );\r\n\r\n    setHistogramConfigs({\r\n      ...histogramConfigs,\r\n      [props.currentFileId]: {\r\n        channels: [\r\n          {\r\n            color: \"#ffffff\",\r\n            enabled: true,\r\n            gamma: 1,\r\n            max: 250,\r\n            min: 0,\r\n            name: \"TL Brightfield\",\r\n            type: \"brightfield\",\r\n          },\r\n        ],\r\n        nChannels: 1,\r\n      },\r\n    });\r\n\r\n    return () => {\r\n      setOmeDict(null);\r\n    };\r\n  }, [props.currentFileId]);\r\n\r\n  return (\r\n    <div style={{ height: \"100%\" }}>\r\n      {histogramConfigs[props.currentFileId] &&\r\n        omeDict &&\r\n        omeDict[props.currentFileId] &&\r\n        fileViewer.activeFileId && (\r\n          <Renderer\r\n            activeFileId={fileViewer.activeFileId}\r\n            canvasId={\"caseViewerCanvas\" + props.index} // +index\r\n            chainListFileIds={chainListFileIds}\r\n            // changeHiConfig={} setsViewerState\r\n            changingFile={changingFile}\r\n            componentRef={\r\n              (c) =>\r\n                fileViewer.setRendererDict({\r\n                  ...fileViewer.rendererDict,\r\n                  [props.currentFileId]: c,\r\n                }) //currentFileId\r\n            }\r\n            // dimensionsUpdated={fileViewer.dimensionsUpdated}\r\n            displayTimeBar={displayTimeBar}\r\n            displayZStackBar={displayZStackBar}\r\n            fileId={props.currentFileId}\r\n            // fsChain={} setsViewerState\r\n            histogramConfig={histogramConfigs[props.currentFileId]}\r\n            // id={} not used\r\n            isActive={fileViewer.activeFileId === props.currentFileId}\r\n            isChained={isChained}\r\n            ome={omeDict[props.currentFileId]}\r\n            onChangeChain={() => {\r\n              console.log(\"change chain\");\r\n            }}\r\n            onSelectFile={() => {\r\n              console.log(\"selectFile\");\r\n            }}\r\n            // openNextFile={}\r\n            // openPrevFile={}\r\n            // project={}\r\n            // projectId={}\r\n            rendererDict={rendererDict}\r\n            rightSpace={545}\r\n            // setChangingFile={}, maybe need later\r\n            showFullscreen={showFullscreen}\r\n            showZStackBar={showZStackBar}\r\n            splitscreenCount={fileViewer.splitscreenFileIds.length}\r\n            splitscreenFileIds={fileViewer.splitscreenFileIds}\r\n            splitscreenIdx={props.index}\r\n            tZoomROI1={() => {\r\n              console.log(\"TZOom\");\r\n            }}\r\n            updateGlobalT={() => {\r\n              console.log(\"gloablT\");\r\n            }}\r\n            updateGlobalZ={() => {\r\n              console.log(\"globalZ\");\r\n            }}\r\n            // viewerConfig={}\r\n            zoomBottom={0}\r\n            zoomLeft={0}\r\n            zoomROI={zoomROI}\r\n            zoomRight={0}\r\n            zoomTop={0}\r\n            getMousePosition={props.getMousePosition}\r\n          />\r\n        )}\r\n    </div>\r\n  );\r\n}\r\n\r\nFileRenderer.propTypes = {\r\n  currentFileId: PropTypes.string,\r\n  index: PropTypes.number,\r\n  getMousePosition: PropTypes.func,\r\n};\r\n","//Framework imports\r\nimport React, { useContext } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n//External packages\r\nimport { IconButton, Tooltip } from \"@mui/material\";\r\nimport { faExchangeAlt } from \"@fortawesome/free-solid-svg-icons\";\r\nimport { FontAwesomeIcon } from \"@fortawesome/react-fontawesome\";\r\n// HSA KIT Components\r\nimport { FileViewerContext } from \"../FileViewer\";\r\n\r\n/*\r\nFunction to toggle the toolbar.\r\nThe const \"toggle\" sets the Imagepreview and Foldertree width to 0, when these two have a value >0\r\n*/\r\n\r\nfunction ToggleButtonFV(props) {\r\n  const fileViewer = useContext(FileViewerContext);\r\n  // const [newPreviewWidth, setNewPreviewWidth] = useState(0);\r\n  // const [newTreeWidth, setNewTreeWidth] = useState(0);\r\n\r\n  const styles = {\r\n    toolbarButton: {\r\n      display: \"inline-block\",\r\n      width: 40,\r\n      height: 40,\r\n      padding: 0,\r\n      margin: 0,\r\n      fontSize: 22,\r\n    },\r\n  };\r\n\r\n  /*\r\n  Errorfunction to toggle the Toolbar\r\n  */\r\n  const toggle = () => {\r\n    //maybe add notification that sidebar wont toggle if no file selected\r\n    if (fileViewer.selectedFile === null) return;\r\n    if (fileViewer.oldPreviewWidth && fileViewer.oldTreeWidth > 0) {\r\n      fileViewer.setPreviewWidth(fileViewer.oldPreviewWidth);\r\n      fileViewer.setTreeWidth(fileViewer.oldTreeWidth);\r\n      fileViewer.setOldPreviewWidth(0);\r\n      fileViewer.setOldTreeWidth(0);\r\n    } else {\r\n      fileViewer.setOldPreviewWidth(fileViewer.previewWidth);\r\n      fileViewer.setOldTreeWidth(fileViewer.treeWidth);\r\n      fileViewer.setPreviewWidth(0);\r\n      fileViewer.setTreeWidth(0);\r\n    }\r\n    props.updateDimensions();\r\n  };\r\n\r\n  return (\r\n    <Tooltip disableinteractive=\"true\" placement=\"left\" title=\"Toggle Sidebar\">\r\n      <IconButton\r\n        className={`${{ ...styles.toolbarButton }}`}\r\n        style={{ ...styles.toolbarButton }}\r\n        onClick={toggle}\r\n      >\r\n        <FontAwesomeIcon icon={faExchangeAlt} />\r\n      </IconButton>\r\n    </Tooltip>\r\n  );\r\n}\r\n\r\nToggleButtonFV.propTypes = {\r\n  updateDimensions: PropTypes.func,\r\n};\r\n\r\nexport default ToggleButtonFV;\r\n","//Framework imports\r\nimport React, { useState } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n\r\n//Imports from Project\r\nimport ToggleButtonFV from \"./components/ToggleButtonFV\";\r\nimport ToggleButton from \"../viewer/components/ToggleButton\";\r\nimport { Fade, Popper, Paper, IconButton, Tooltip } from \"@mui/material\";\r\n\r\nimport { ZoomIn, ZoomOut, ViewQuilt } from \"@mui/icons-material\";\r\nimport ZoomOutMapIcon from \"@mui/icons-material/ZoomOutMap\";\r\nimport { faCamera } from \"@fortawesome/free-solid-svg-icons\";\r\nimport { FontAwesomeIcon } from \"@fortawesome/react-fontawesome\";\r\n\r\nconst styles = {\r\n  toolbar: {\r\n    position: \"relative\",\r\n    margin: 0,\r\n    padding: 0,\r\n    width: \"40px\",\r\n    background: \"#fff\",\r\n    height: \"100%\",\r\n    display: \"grid\",\r\n    gridTemplateRows: \"1fr auto\",\r\n    overflowX: \"hidden\",\r\n    overflowY: \"auto\",\r\n  },\r\n  buttonGroup: {\r\n    display: \"inline-block\",\r\n    height: 40,\r\n    padding: 0,\r\n    margin: 0,\r\n    fontSize: 22,\r\n  },\r\n  buttonStyle: {\r\n    width: \"40px\",\r\n    height: \"40px\",\r\n    margin: 0,\r\n    display: \"inline-block\",\r\n    padding: 0,\r\n    fontSize: \"22px\",\r\n  },\r\n  textButtonStyle: {\r\n    fontSize: 18,\r\n    fontWeight: \"bold\",\r\n  },\r\n  toolbarButtonIcon: {\r\n    verticalAlign: \"-4px\",\r\n  },\r\n};\r\n\r\nconst style = (theme) => ({\r\n  toolBar: {\r\n    position: \"relative\",\r\n    margin: 0,\r\n    padding: 0,\r\n    marginRight: 5,\r\n    background: \"#fff\",\r\n    height: \"100%\",\r\n    display: \"grid\",\r\n    gridTemplateRows: \"1fr auto\",\r\n    overflowX: \"hidden\",\r\n    overflowY: \"auto\",\r\n  },\r\n  toolbarButton: {\r\n    display: \"inline-block\",\r\n    width: 40,\r\n    height: 40,\r\n    padding: 0,\r\n    margin: 0,\r\n    fontSize: 22,\r\n  },\r\n  toolbarButtonIcon: {\r\n    verticalAlign: \"-4px\",\r\n  },\r\n  textIcon: {\r\n    fontSize: 18,\r\n    fontWeight: \"bold\",\r\n  },\r\n  toolbarButtonChecked: {\r\n    width: 40,\r\n    color: theme.palette.primary.main,\r\n  },\r\n  divider: {\r\n    marginLeft: 5,\r\n    marginRight: 5,\r\n  },\r\n});\r\n\r\n/*\r\nFunction to place and to style the buttons \r\n*/\r\nfunction Toolbar(props) {\r\n  const [openAdjust, setOpenAdjust] = useState(false);\r\n  const [anchorEl, setAnchorEl] = useState(null);\r\n\r\n  return (\r\n    <div\r\n      style={{\r\n        ...styles.toolbar,\r\n      }}\r\n    >\r\n      <div>\r\n        <Popper\r\n          open={openAdjust}\r\n          anchorEl={anchorEl}\r\n          placement=\"left\"\r\n          transition\r\n        >\r\n          {({ TransitionProps }) => (\r\n            <Fade {...TransitionProps} timeout={350}>\r\n              <Paper\r\n                style={{\r\n                  height: 40,\r\n                }}\r\n              >\r\n                {/* <ToggleButton\r\n                    classes={classes}\r\n                    title={\"Toggle time bar\"}\r\n                    name={\"showTimeBar\"}\r\n                    value={rendererRef.getLayoutElement(\"showTimeBar\")}\r\n                    icon={\"faStopwatch\"}\r\n                    //onToggle={rendererRef.onToggle}\r\n                    onToggle={onToggleTimeBar}\r\n                    disabled={Boolean(!displayTimeBar)}\r\n                  />\r\n\r\n                  <ToggleButton\r\n                    classes={classes}\r\n                    title={\"Toggle Z-stack\"}\r\n                    name={\"showZStackBar\"}\r\n                    value={rendererRef.getLayoutElement(\"showZStackBar\")}\r\n                    icon={\"faLayerGroup\"}\r\n                    onToggle={rendererRef.onToggle}\r\n                    disabled={Boolean(!displayZStackBar)}\r\n                  />\r\n\r\n                  <ToggleButton\r\n                    classes={classes}\r\n                    title={\"Toggle scalebar\"}\r\n                    name={\"showScaleBar\"}\r\n                    value={rendererRef.getLayoutElement(\"showScaleBar\")}\r\n                    icon={\"faRuler\"}\r\n                    onToggle={rendererRef.onToggle}\r\n                    disabled={Boolean(ome && ome.physicalSizeX)}\r\n                  />\r\n\r\n                  <ToggleButton\r\n                    classes={classes}\r\n                    title={\"Toggle Object Index\"}\r\n                    name={\"showObjectIdx\"}\r\n                    value={rendererRef.getLayoutElement(\"showObjectIdx\")}\r\n                    icon={\"faInfoCircle\"}\r\n                    onToggle={rendererRef.onToggle}\r\n                  /> */}\r\n\r\n                <ToggleButton\r\n                  classes={props.classes}\r\n                  title={\"Toggle Navigator\"}\r\n                  name={\"showMiniMap\"}\r\n                  value={props.rendererRef.getLayoutElement(\"showMiniMap\")}\r\n                  icon={\"MapIcon\"}\r\n                  onToggle={props.rendererRef.onToggle}\r\n                />\r\n\r\n                <ToggleButton\r\n                  classes={props.classes}\r\n                  title={\"Toggle image info\"}\r\n                  name={\"showImageInfo\"}\r\n                  value={props.rendererRef.getLayoutElement(\"showImageInfo\")}\r\n                  icon={\"faInfo\"}\r\n                  onToggle={props.rendererRef.onToggle}\r\n                />\r\n\r\n                <ToggleButton\r\n                  classes={props.classes}\r\n                  title={\"Toggle zoom info bar\"}\r\n                  name={\"showZoomBar\"}\r\n                  value={props.rendererRef.getLayoutElement(\"showZoomBar\")}\r\n                  icon={\"LinearScaleIcon\"}\r\n                  onToggle={props.rendererRef.onToggle}\r\n                />\r\n\r\n                {/* <ToggleButton\r\n                    classes={classes}\r\n                    title={\"Toggle File navigation buttons\"}\r\n                    name={\"showFileNavButtons\"}\r\n                    value={rendererRef.getLayoutElement(\"showFileNavButtons\")}\r\n                    icon={\"UnfoldMore\"}\r\n                    onToggle={rendererRef.onToggle}\r\n                  /> */}\r\n              </Paper>\r\n            </Fade>\r\n          )}\r\n        </Popper>\r\n        {props.splitscreenCount === 1 && (\r\n          <Tooltip placement=\"left\" title=\"Adjust layout\">\r\n            <IconButton\r\n              className={props.classes.toolbarButton}\r\n              size=\"small\"\r\n              onClick={(e) => {\r\n                setOpenAdjust(!openAdjust);\r\n                setAnchorEl(e.target);\r\n              }}\r\n            >\r\n              <ViewQuilt style={{ ...styles.toolbarButtonIcon }} />\r\n            </IconButton>\r\n          </Tooltip>\r\n        )}\r\n      </div>\r\n      <div>\r\n        <hr></hr>\r\n        <div>\r\n          <Tooltip\r\n            disableinteractive=\"true\"\r\n            placement=\"left\"\r\n            title=\"Download current view\"\r\n          >\r\n            <IconButton\r\n              onClick={() => {\r\n                props.onSaveScreenshot();\r\n              }}\r\n              style={{ ...styles.buttonStyle }}\r\n            >\r\n              <FontAwesomeIcon icon={faCamera} />\r\n            </IconButton>\r\n          </Tooltip>\r\n        </div>\r\n        <div>\r\n          <Tooltip disableinteractive=\"true\" placement=\"left\" title=\"Zoom 100%\">\r\n            <IconButton\r\n              onClick={() => {\r\n                props.triggerZoomAction(\"oneToN\", 1);\r\n              }}\r\n              style={{ ...styles.buttonStyle, ...styles.textButtonStyle }}\r\n            >\r\n              <span>{\"1:1\"}</span>\r\n            </IconButton>\r\n          </Tooltip>\r\n        </div>\r\n        <div>\r\n          <Tooltip\r\n            disabledisableinteractive=\"true\"\r\n            placement=\"left\"\r\n            title=\"Zoom 75%\"\r\n          >\r\n            <IconButton\r\n              onClick={() => {\r\n                props.triggerZoomAction(\"oneToN\", 4);\r\n              }}\r\n              style={{ ...styles.buttonStyle, ...styles.textButtonStyle }}\r\n            >\r\n              <span>{\"1:4\"}</span>\r\n            </IconButton>\r\n          </Tooltip>\r\n        </div>\r\n        <div>\r\n          <Tooltip disableinteractive=\"true\" placement=\"left\" title=\"Zoom 10%\">\r\n            <IconButton\r\n              onClick={() => {\r\n                props.triggerZoomAction(\"oneToN\", 10);\r\n              }}\r\n              style={{ ...styles.buttonStyle, ...styles.textButtonStyle }}\r\n            >\r\n              <span>{\"1:10\"}</span>\r\n            </IconButton>\r\n          </Tooltip>\r\n        </div>\r\n        <div>\r\n          <Tooltip\r\n            disableinteractive=\"true\"\r\n            placement=\"left\"\r\n            title=\"Zoom to fit\"\r\n          >\r\n            <IconButton\r\n              style={{ ...styles.buttonStyle }}\r\n              onClick={() => {\r\n                props.triggerZoomAction(\"zoomFit\", 0);\r\n              }}\r\n            >\r\n              <ZoomOutMapIcon />\r\n            </IconButton>\r\n          </Tooltip>\r\n        </div>\r\n        <div>\r\n          <div>\r\n            <Tooltip disableinteractive=\"true\" placement=\"left\" title=\"Zoom In\">\r\n              <IconButton\r\n                onClick={() => {\r\n                  props.triggerZoomAction(\"increase\", 0);\r\n                }}\r\n                style={{ ...styles.buttonStyle }}\r\n              >\r\n                <ZoomIn />\r\n              </IconButton>\r\n            </Tooltip>\r\n            <Tooltip\r\n              disableinteractive=\"true\"\r\n              placement=\"left\"\r\n              title=\"Zoom Out\"\r\n            >\r\n              <IconButton\r\n                onClick={() => {\r\n                  props.triggerZoomAction(\"decrease\", 0);\r\n                }}\r\n                style={{ ...styles.buttonStyle }}\r\n              >\r\n                <ZoomOut />\r\n              </IconButton>\r\n            </Tooltip>\r\n          </div>\r\n        </div>\r\n        {props.updateDimensions && (\r\n          <ToggleButtonFV updateDimensions={props.updateDimensions} />\r\n        )}\r\n      </div>\r\n    </div>\r\n  );\r\n}\r\n\r\nToolbar.propTypes = {\r\n  triggerZoomAction: PropTypes.func,\r\n  onSaveScreenshot: PropTypes.func,\r\n  updateDimensions: PropTypes.func,\r\n  splitscreenCount: PropTypes.number,\r\n  rendererRef: PropTypes.object,\r\n  classes: PropTypes.object.isRequired,\r\n};\r\n\r\nexport default withStyles(style)(Toolbar);\r\n","// Framework imports\r\nimport React, { useContext, useEffect, useState, useRef } from \"react\";\r\nimport LazyLoad from \"react-lazyload\";\r\n\r\n// External packages\r\nimport { Grid, Tooltip } from \"@mui/material\";\r\n\r\n// HSA Imports\r\nimport { FileViewerContext } from \"./FileViewer\";\r\nimport Backend from \"../common/utils/Backend\";\r\nimport { theme } from \"../../src/index\";\r\n\r\n/**\r\n * Collected (reusable) styles for page elements.\r\n */\r\n\r\nconst styles = {\r\n  fileBox: {\r\n    minWidth: 0,\r\n    width: 200,\r\n    // borderLeft: \"5px solid  #EBEBEB\",\r\n    background: \"#fff\",\r\n    overflow: \"auto\",\r\n    justifyContent: \"center\",\r\n  },\r\n  imgContainer: {\r\n    margin: \"0 10px 10px\",\r\n    textAlign: \"center\",\r\n  },\r\n  img: {\r\n    display: \"inline-block\",\r\n    width: \"100%\",\r\n  },\r\n  placeholder: {\r\n    width: \"170px\",\r\n    height: \"40px\",\r\n    border: \"1px solid gray\",\r\n    borderWidth: 2,\r\n    fontSize: 15,\r\n    textAlign: \"center\",\r\n    marginTop: \"20px\",\r\n    marginLeft: \"auto\",\r\n    marginRight: \"auto\",\r\n  },\r\n};\r\n\r\n/**\r\n * Preview from the loaded images of the selected Foldertree\r\n */\r\nexport default function ImagePreview() {\r\n  const labelHeight = 30;\r\n  const fileViewer = useContext(FileViewerContext);\r\n  const [fileList, setFileList] = useState([]);\r\n  const [enterDelay, setEnterDelay] = useState(1000);\r\n  const imageRefs = useRef([]);\r\n\r\n  /*\r\n  If you click on a tree file, the selected Image in the Imagepreview scrolls into View\r\n   */\r\n  // useEffect(() => {\r\n  //   if (fileViewer.selectedFile) {\r\n  //     const fileIdx = fileList.findIndex(\r\n  //       (file) => file.path === fileViewer.selectedFile\r\n  //     );\r\n  //     imageRefs.current[fileIdx].scrollIntoView({\r\n  //       behavior: \"smooth\",\r\n  //     });\r\n  //   }\r\n  // }, [fileViewer.selectedFile]);\r\n\r\n  /*\r\n  Loading the Filelist\r\n  Trigger: Selected Folder\r\n  */\r\n  useEffect(() => {\r\n    if (fileViewer.selectedFolder) {\r\n      Backend.walkDir(fileViewer.selectedFolder.path, true, (files) => {\r\n        imageRefs.current = imageRefs.current.slice(0, files.length);\r\n\r\n        setFileList(\r\n          files\r\n            .filter((file) => file.type === \"file\")\r\n            .map((file) => {\r\n              return file;\r\n            })\r\n        );\r\n      });\r\n    }\r\n  }, [fileViewer.selectedFolder]);\r\n\r\n  /*\r\n  Scaling the images after changing the Imagepreview width\r\n  Trigger: Changing Imagepreview width\r\n  */\r\n  useEffect(() => {\r\n    calculatePreviewHeight();\r\n  }, [fileViewer.previewWidth]);\r\n\r\n  /*\r\n  Set Imagepreview width\r\n  Trigger: Initialise\r\n  */\r\n  // useEffect(() => {\r\n  //   fileViewer.setPreviewWidth(styles.fileBox.width);\r\n  // }, []);\r\n\r\n  /*\r\n  Errorfunction to scale the images\r\n  */\r\n  const calculatePreviewHeight = () => {\r\n    for (let i = 0; i < fileList.length; i++) {\r\n      let element1 = imageRefs.current[i];\r\n      if (element1) {\r\n        const elemHeight = element1.clientHeight;\r\n        if (elemHeight > 0) {\r\n          fileList[i].height = elemHeight + labelHeight;\r\n        }\r\n      }\r\n    }\r\n  };\r\n\r\n  return (\r\n    <Grid\r\n      style={{\r\n        ...styles.fileBox,\r\n        width: fileViewer.previewWidth,\r\n      }}\r\n    >\r\n      {fileList.length > 0 ? (\r\n        <div>\r\n          {fileList.map((file, idx) => (\r\n            <LazyLoad key={file.path}>\r\n              <Tooltip\r\n                title={\r\n                  <div>\r\n                    <div style={{ width: 80, display: \"inline-block\" }}>\r\n                      File Size:{\" \"}\r\n                    </div>\r\n                    {file.fileSize}\r\n                    <br />\r\n                    <div style={{ width: 80, display: \"inline-block\" }}>\r\n                      Creation Date:{\" \"}\r\n                    </div>\r\n                    {file.creationTime}\r\n                  </div>\r\n                }\r\n                key={file.path}\r\n                enterDelay={enterDelay}\r\n                onMouseEnter={() => {\r\n                  setEnterDelay(1000);\r\n                }}\r\n              >\r\n                <div\r\n                  key={file.path}\r\n                  style={{ ...styles.imgContainer, height: file.height }}\r\n                >\r\n                  <img\r\n                    draggable=\"true\"\r\n                    onDragStart={(e) => {\r\n                      e.dataTransfer.setData(\"text/plain\", file.path);\r\n                    }}\r\n                    ref={(el) => (imageRefs.current[idx] = el)}\r\n                    style={{\r\n                      ...styles.img,\r\n\r\n                      border:\r\n                        file.path === fileViewer.selectedFile\r\n                          ? \"solid 3px \" + theme.palette.primary.main\r\n                          : \"none\",\r\n                    }}\r\n                    src={Backend.imageThumbnail(encodeURIComponent(file.path))}\r\n                    alt=\"Preview Image\"\r\n                    onClick={() => {\r\n                      fileViewer.setSelFile(file.path);\r\n                    }}\r\n                  />\r\n\r\n                  <div style={{ fontSize: 12 }}>\r\n                    {\" \"}\r\n                    {file.path.substring(file.path.lastIndexOf(\"/\") + 1)}\r\n                  </div>\r\n                </div>\r\n              </Tooltip>\r\n            </LazyLoad>\r\n          ))}\r\n        </div>\r\n      ) : (\r\n        <div style={{ ...styles.placeholder }}>No selected Folder</div>\r\n      )}\r\n    </Grid>\r\n  );\r\n}\r\n","// Framework imports\r\nimport React, { useEffect, useState, useContext } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\n// External packages\r\nimport TreeItem from \"@mui/lab/TreeItem\";\r\nimport { Tooltip } from \"@mui/material\";\r\nimport FolderOpenOutlinedIcon from \"@mui/icons-material/FolderOpenOutlined\";\r\nimport InsertDriveFileOutlinedIcon from \"@mui/icons-material/InsertDriveFileOutlined\";\r\n\r\n// HSA Packages\r\nimport Backend from \"../../common/utils/Backend\";\r\nimport { FileViewerContext } from \"../FileViewer\";\r\n\r\n/**\r\n * Collected (reusable) styles for page elements.\r\n */\r\nconst styles = {\r\n  root: {\r\n    display: \"grid\",\r\n    gridTemplateColumns: \"auto 1fr\",\r\n    width: \"300px\",\r\n    overflow: \"hidden\",\r\n  },\r\n  treeItem: {\r\n    width: \"100%\",\r\n    overflow: \"hidden\",\r\n    whiteSpace: \"nowrap\",\r\n    textOverflow: \"ellipsis\",\r\n  },\r\n};\r\n\r\n/**\r\n * Folder of foldertree.\r\n * @param {string} path Path of folder to get files and folders from. Defaults to \"\".\r\n * @returns React render component.\r\n */\r\nexport default function RecursiveFolderEntity({ entity }) {\r\n  const [dirContent, setDirContent] = useState([]);\r\n  const fileViewer = useContext(FileViewerContext);\r\n\r\n  useEffect(() => {\r\n    if (entity.type !== \"file\") {\r\n      Backend.walkDir(entity.path, true, (content) => setDirContent(content));\r\n    }\r\n  }, []);\r\n\r\n  return entity.type === \"directory\" ? (\r\n    <TreeItem\r\n      nodeId={entity.path}\r\n      label={<FolderEntity entity={entity} />}\r\n      onClick={() => fileViewer.setSelFolder(entity)}\r\n    >\r\n      {dirContent.map((item) => (\r\n        <RecursiveFolderEntity key={item.path} entity={item} />\r\n      ))}\r\n    </TreeItem>\r\n  ) : (\r\n    <TreeItem\r\n      key={entity.path}\r\n      nodeId={entity.path}\r\n      label={<FolderEntity entity={entity} />}\r\n      onClick={() => {\r\n        fileViewer.setSelFile(entity.path);\r\n      }}\r\n    />\r\n  );\r\n}\r\n\r\nRecursiveFolderEntity.propTypes = {\r\n  entity: PropTypes.object.isRequired,\r\n};\r\n\r\n/**\r\n *styling of treeitems\r\n */\r\nexport function FolderEntity({ entity }) {\r\n  const fileViewer = useContext(FileViewerContext);\r\n  const path = entity.path;\r\n  const endOfPath = path.substring(path.lastIndexOf(\"/\") + 1);\r\n  const isSel = path === fileViewer.selectedFile;\r\n\r\n  return (\r\n    <div\r\n      style={{\r\n        ...styles.root,\r\n        background: isSel ? \"rgb(176,196,222)\" : \"none\",\r\n      }}\r\n    >\r\n      {entity.type === \"directory\" ? (\r\n        <FolderOpenOutlinedIcon sx={{ paddingRight: \"5px\" }} />\r\n      ) : (\r\n        <InsertDriveFileOutlinedIcon sx={{ paddingRight: \"5px\" }} />\r\n      )}\r\n      <Tooltip\r\n        title={endOfPath}\r\n        styles={{ width: \"100%\", textAlign: \"center\" }}\r\n      >\r\n        <div style={styles.treeItem}>{endOfPath}</div>\r\n      </Tooltip>\r\n    </div>\r\n  );\r\n}\r\n\r\nFolderEntity.propTypes = {\r\n  entity: PropTypes.object.isRequired,\r\n};\r\n","// Framework imports\r\nimport React, { useEffect, useState, useContext } from \"react\";\r\n\r\n// External packages\r\nimport { Button, Grid } from \"@mui/material\";\r\nimport TreeView from \"@mui/lab/TreeView\";\r\nimport { Box } from \"@mui/system\";\r\nimport ExpandMoreIcon from \"@mui/icons-material/ExpandMore\";\r\nimport ChevronRightIcon from \"@mui/icons-material/ChevronRight\";\r\n\r\n// HSA KIT Components\r\nimport RecursiveFolderEntity from \"./components/FolderEntity.jsx\";\r\nimport Backend from \"../common/utils/Backend.jsx\";\r\nimport { FileViewerContext } from \"./FileViewer\";\r\n\r\n/**\r\n * Collected (reusable) styles for page elements.\r\n */\r\nconst styles = {\r\n  root: {\r\n    height: \"100%\",\r\n    width: 301,\r\n    background: \"#fff\",\r\n    // borderLeft: \"5px solid  #EBEBEB\",\r\n    display: \"grid\",\r\n    gridTemplateRows: \"auto 1fr\",\r\n    overflow: \"hidden\",\r\n  },\r\n  button: {\r\n    height: \"100%\",\r\n    width: \"100%\",\r\n    display: \"flex\",\r\n    justifyContent: \"space-between\",\r\n  },\r\n};\r\n\r\n/**\r\n * Vertical Foldertree for quick folder selection.\r\n */\r\nexport default function Foldertree() {\r\n  const fileViewer = useContext(FileViewerContext);\r\n  const [topLevelEntities, setTLEs] = useState([]);\r\n  const [expanded, setExpanded] = useState([]);\r\n  const [openFolder, setOpenFolder] = useState([]);\r\n\r\n  /*\r\n  Loading Folder list and set Foldertree width\r\n  Trigger: Initialise\r\n  */\r\n  useEffect(() => {\r\n    Backend.walkDir(\"\", true, (entities) => {\r\n      // console.debug(entities);\r\n      setTLEs(entities);\r\n    });\r\n    // fileViewer.setTreeWidth(styles.root.width);\r\n  }, []);\r\n\r\n  /*\r\n  Function for Button \"Open Previous/Collapse All\" \r\n  */\r\n  const handleCollapseAll = () => {\r\n    setOpenFolder(expanded);\r\n    if (expanded.length > 0) {\r\n      setExpanded([]);\r\n    } else {\r\n      setExpanded(openFolder);\r\n    }\r\n  };\r\n\r\n  return (\r\n    <Grid sx={{ ...styles.root, width: fileViewer.treeWidth }}>\r\n      <Button style={{ ...styles.button }} onClick={handleCollapseAll}>\r\n        {expanded.length > 0 ? \"Collapse All\" : \"Open Previous\"}\r\n      </Button>\r\n      <Box sx={{ height: \"100%\", overflow: \"auto\" }}>\r\n        <TreeView\r\n          defaultCollapseIcon={<ExpandMoreIcon />}\r\n          defaultExpandIcon={<ChevronRightIcon />}\r\n          expanded={expanded}\r\n          onNodeToggle={(event, nodeIds) => setExpanded(nodeIds)}\r\n        >\r\n          {topLevelEntities.map((tle) => (\r\n            <RecursiveFolderEntity key={tle.path} entity={tle} />\r\n          ))}\r\n        </TreeView>\r\n      </Box>\r\n    </Grid>\r\n  );\r\n}\r\n","// Framework imports\r\nimport React, { useState, createContext, useEffect } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport { Grid } from \"@mui/material\";\r\n\r\n// HSA KIT Components\r\nimport FileRenderer from \"./FileRenderer\";\r\nimport FileToolBar from \"./FileToolBar\";\r\nimport ImagePreview from \"./ImagePreview\";\r\nimport Foldertree from \"./Foldertree.jsx\";\r\nimport Backend from \"../common/utils/Backend\";\r\nimport LocalVerticalResizeBorder from \"../common/components/LocalVerticalResizeBorder\";\r\n\r\nimport { withPersistentStorage } from \"../viewer/contexts/PersistentStorageContext\";\r\nimport { withTiles } from \"../viewer/contexts/TilesContext\";\r\n\r\nimport { Tooltip, IconButton } from \"@mui/material\";\r\nimport RemoveCircleIcon from \"@mui/icons-material/RemoveCircle\";\r\n// import LinkIcon from \"@mui/icons-material/Link\";\r\n// import LinkOffIcon from \"@mui/icons-material/LinkOff\";\r\n\r\n/**\r\n * Collected (reusable) styles for page elements.\r\n */\r\nconst styles = {\r\n  root: {\r\n    width: \"100%\",\r\n    height: \"100%\",\r\n    background: \"#EBEBEB\",\r\n    overflow: \"hidden\",\r\n    position: \"relative\",\r\n    display: \"grid\",\r\n    gridTemplateColumns: \"1fr auto 5px auto 5px auto\",\r\n  },\r\n  dropfieldRoot: {\r\n    position: \"absolute\",\r\n    top: 0,\r\n    left: 0,\r\n    right: 0,\r\n    bottom: 0,\r\n    background: \"rgba(0, 0, 0, 0.514)\",\r\n    color: \"rgb(255, 255, 255)\",\r\n    zIndex: 100,\r\n    pointerEvents: \"none\",\r\n    border: \"dashed white 4px\",\r\n    textAlign: \"center\",\r\n    paddingTop: \"calc(50vh - 74px)\",\r\n    fontSize: \"20px\",\r\n  },\r\n  rendererGridRoot: {\r\n    background: \"#EBEBEB\",\r\n    position: \"relative\",\r\n    width: \"100%\",\r\n    height: \"100%\",\r\n    overflowY: \"inherit\",\r\n    overflowX: \"inherit\",\r\n  },\r\n  splitscreenGridRoot: {\r\n    flexGrow: 0,\r\n    margin: 0,\r\n    position: \"relative\",\r\n    background: \"#EBEBEB\",\r\n  },\r\n  activeIndicatorBorder: {\r\n    position: \"absolute\",\r\n    pointerEvents: \"none\",\r\n    zIndex: 100,\r\n    height: \"100%\",\r\n    width: \"100%\",\r\n    border: \"solid #0673C1 4px\",\r\n  },\r\n  excludeButton: {\r\n    position: \"absolute\",\r\n    top: 5,\r\n    right: 5,\r\n    zIndex: 100,\r\n  },\r\n  attachButton: {\r\n    position: \"absolute\",\r\n    top: 5,\r\n    right: 40,\r\n    zIndex: 100,\r\n    color: \"#666\",\r\n  },\r\n};\r\n\r\nexport const FileViewerContext = createContext();\r\n\r\n//to fix:\r\n//-replace objects with maps (maybe)\r\n//-check viewer functionalities\r\n//-persistent storage\r\n//-scene switch\r\n//-chaining??\r\n//-fullscreen??\r\n//-histogram??\r\n//-file compatibilty ~zstack\r\n//-highlight of splitscreenfile in preview\r\n//-screenshot data gathering?\r\n//-remove/rewrite renderer code!?\r\n\r\n/**\r\n * Overall parent component for File Viewer.\r\n * This component contains all parts of the File viewer and will be called with the /File_view route.\r\n * @returns React Object for File Viewer.\r\n */\r\nfunction FileViewer(props) {\r\n  const [selectedFolder, setSelFolder] = useState(null);\r\n  const [selectedFile, setSelFile] = useState(null);\r\n  const [previewWidth, setPreviewWidth] = useState(210);\r\n  const [oldPreviewWidth, setOldPreviewWidth] = useState(0);\r\n  const [treeWidth, setTreeWidth] = useState(300);\r\n  const [oldTreeWidth, setOldTreeWidth] = useState(0);\r\n  const [splitscreenFileIds, setSplitscreenFileIds] = useState([]);\r\n  const [activeFileId, setActiveFileId] = useState(null);\r\n  const [showSplitscreenDropzone, setShowSplitscreenDropzone] = useState(false);\r\n  const [containerKey, setContainerKey] = useState(new Date().getTime());\r\n  const [rendererDict, setRendererDict] = useState({});\r\n  const [zoomObjectDict, setZoomObjectDict] = useState({});\r\n\r\n  const context = {\r\n    selectedFolder,\r\n    setSelFolder,\r\n    selectedFile,\r\n    setSelFile,\r\n    previewWidth,\r\n    setPreviewWidth,\r\n    oldPreviewWidth,\r\n    setOldPreviewWidth,\r\n    treeWidth,\r\n    setTreeWidth,\r\n    oldTreeWidth,\r\n    setOldTreeWidth,\r\n    activeFileId,\r\n    splitscreenFileIds,\r\n    rendererDict,\r\n    setRendererDict,\r\n    setContainerKey,\r\n    zoomObjectDict,\r\n    setZoomObjectDict,\r\n    updateDimensions,\r\n  };\r\n\r\n  let mousePosition = {\r\n    mouseX: 0,\r\n    mouseY: 0,\r\n  };\r\n\r\n  useEffect(() => {\r\n    window.addEventListener(\"resize\", () => updateDimensions());\r\n    window.addEventListener(\"keydown\", keyDown);\r\n    return () => {\r\n      window.removeEventListener(\"resize\", () => updateDimensions());\r\n      window.addEventListener(\"keydown\", keyDown);\r\n    };\r\n  }, []);\r\n\r\n  useEffect(() => {\r\n    if (selectedFile === null) return;\r\n    handleFileChange(false, selectedFile);\r\n    updateDimensions();\r\n  }, [selectedFile]);\r\n\r\n  useEffect(() => {\r\n    document.onmousemove = (e) => {\r\n      mousePosition = {\r\n        mouseX: e.pageX,\r\n        mouseY: e.pageY,\r\n      };\r\n    };\r\n  });\r\n\r\n  const getMousePosition = () => {\r\n    return [mousePosition.mouseX, mousePosition.mouseY];\r\n  };\r\n\r\n  const keyDown = (e) => {\r\n    console.log(\"keydown\", e);\r\n  };\r\n\r\n  const updateDimensions = () => {\r\n    let savedT = 0;\r\n    setContainerKey(new Date().getTime());\r\n    if (rendererDict[activeFileId]?.state) {\r\n      savedT = rendererDict[activeFileId].state.t;\r\n    }\r\n    if (savedT > 0 && rendererDict[activeFileId])\r\n      rendererDict[activeFileId].updateT(savedT);\r\n    handleSavedZoomObjects();\r\n  };\r\n\r\n  const handleSavedZoomObjects = () => {\r\n    for (const fileId of splitscreenFileIds) {\r\n      let zoomData = props.persistentStorage.load(\"zoomObjectFV\" + fileId);\r\n      if (zoomData) {\r\n        setZoomObjectDict({\r\n          ...zoomObjectDict,\r\n          [fileId]: structuredClone(zoomData),\r\n        });\r\n      } else {\r\n        setZoomObjectDict({\r\n          ...zoomObjectDict,\r\n          [fileId]: {\r\n            zoomRoi: false,\r\n            zoomLeft: 0,\r\n            zoomRight: 0,\r\n            zoomTop: 0,\r\n            zoomBottom: 0,\r\n          },\r\n        });\r\n      }\r\n    }\r\n  };\r\n\r\n  const onSaveScreenshot = () => {\r\n    // const file = this.state.project.files.find(\r\n    //   (file) => file.id === this.state.activeFileId\r\n    // );\r\n\r\n    let img = rendererDict[activeFileId].canvas;\r\n\r\n    // let ctx = img.getContext(\"2d\");\r\n\r\n    // ctx.save();\r\n    // let a = ctx.getTransform().a;\r\n    // let d = ctx.getTransform().d;\r\n    // let e = ctx.getTransform().e;\r\n    // let f = ctx.getTransform().f;\r\n    // ctx.setTransform(1, 0, 0, 1, 0, 0);\r\n\r\n    // let fontSize = 20;\r\n    // ctx.font = fontSize + \"px Arial\";\r\n\r\n    // // Box-Position\r\n    // let x = 10;\r\n    // let y = 10;\r\n    // let width = ctx.measureText(projectName).width + 10;\r\n    // let height = parseInt(fontSize, 10) + 10;\r\n\r\n    // // Draw Box-Border\r\n    // ctx.fillStyle = \"black\";\r\n    // let thickness = 1;\r\n    // ctx.fillRect(\r\n    //   x - thickness,\r\n    //   y - thickness,\r\n    //   width + thickness * 2,\r\n    //   height + thickness * 2\r\n    // );\r\n\r\n    // // Draw Box\r\n    // // ctx.globalAlpha = 0.8;\r\n    // ctx.fillStyle = \"white\";\r\n    // ctx.fillRect(x, y, width, height);\r\n\r\n    // // Add Text\r\n    // // ctx.globalAlpha = 1;\r\n    // ctx.textAlign = \"left\";\r\n    // ctx.textBaseline = \"top\";\r\n    // ctx.fillStyle = \"black\";\r\n    // ctx.fillText(projectName, 15, 15);\r\n\r\n    // ctx.setTransform(a, 0, 0, d, e, f);\r\n    // ctx.restore();\r\n\r\n    img = img.toDataURL(\"image/jpeg\", 0.9);\r\n\r\n    // if (\r\n    //   this.state.project.type.includes(\"HistoPointCounting\") ||\r\n    //   this.state.project.type.includes(\"HistoClassification\")\r\n    // ) {\r\n    //   const fileName = file.fileName.split(\".\").slice(0, -1).join(\".\");\r\n    //   let lastIndex = file.sourcePath.replace(/\\\\/g, \"/\").lastIndexOf(\"/\");\r\n    //   const folderPath = file.sourcePath.substring(0, lastIndex + 1);\r\n    //   Backend.saveScreenshot(\r\n    //     folderPath,\r\n    //     fileName,\r\n    //     this.dataURItoBlob(img),\r\n    //     (response) => {\r\n    //       window.showSuccessSnackbar(\r\n    //         \"Screenshot saved here: \" + response.savePath\r\n    //       );\r\n    //     }\r\n    //   );\r\n    // } else {\r\n    let link = document.createElement(\"a\");\r\n\r\n    // projekt_methode_filename_SceneNr_001.png\r\n    let screenShotName = `${selectedFile}_S.jpg`;\r\n\r\n    link.download = screenShotName;\r\n    link.href = img.replace(\"image/jpeg\", \"image/octet-stream\");\r\n    link.click();\r\n    // }\r\n  };\r\n\r\n  const triggerZoomAction = (action, n) => {\r\n    switch (action) {\r\n      case \"zoomFit\":\r\n        rendererDict[activeFileId].zoomFit();\r\n        break;\r\n      case \"oneToN\":\r\n        rendererDict[activeFileId].zoomOneToN(n);\r\n        break;\r\n      case \"increase\":\r\n        rendererDict[activeFileId].zoomDelta(-1);\r\n        break;\r\n      case \"decrease\":\r\n        rendererDict[activeFileId].zoomDelta(1);\r\n        break;\r\n      default:\r\n        break;\r\n    }\r\n  };\r\n\r\n  const handleFileChange = async (dropTriggered, file) => {\r\n    let fileId = await fetchFileId(file);\r\n    if (dropTriggered || splitscreenFileIds.length === 0) {\r\n      addToSplitscreen(fileId);\r\n    } else {\r\n      removeRenderer(activeFileId);\r\n      changeFile(fileId);\r\n    }\r\n    setActiveFileId(fileId);\r\n    updateDimensions();\r\n  };\r\n\r\n  const removeRenderer = (fileId) => {\r\n    let dict = rendererDict;\r\n    delete dict[fileId];\r\n    setRendererDict(dict);\r\n  };\r\n\r\n  const fetchFileId = async (file) => {\r\n    let fileId = await Backend.getFileUuid(file);\r\n    if (!fileId.uuid || typeof fileId.uuid !== \"string\") return;\r\n    return fileId.uuid;\r\n  };\r\n\r\n  const addToSplitscreen = (fileId) => {\r\n    let fileIds = splitscreenFileIds.slice();\r\n    fileIds.push(fileId);\r\n    setSplitscreenFileIds(fileIds);\r\n    updateDimensions();\r\n  };\r\n\r\n  const onExcludeSplitscreen = (index, e) => {\r\n    let ids = splitscreenFileIds.slice();\r\n    let activeId = activeFileId;\r\n\r\n    removeRenderer(ids[index]);\r\n    if (activeFileId === ids[index]) {\r\n      ids.splice(index, 1);\r\n      activeId = ids[Math.max(index - 1, 0)];\r\n    } else {\r\n      ids.splice(index, 1);\r\n    }\r\n\r\n    //persistent storage stuff\r\n    //chain stuff\r\n    //...\r\n    setActiveFileId(activeId);\r\n    setSplitscreenFileIds(ids);\r\n    updateDimensions();\r\n    e.stopPropagation();\r\n  };\r\n\r\n  const changeFile = (newFileId) => {\r\n    let fileIds = splitscreenFileIds.slice();\r\n    let idx = fileIds.indexOf(newFileId);\r\n\r\n    if (idx === -1) {\r\n      let currentIdx = fileIds.indexOf(activeFileId);\r\n      fileIds[currentIdx] = newFileId;\r\n      setActiveFileId(newFileId);\r\n      setSplitscreenFileIds(fileIds);\r\n    }\r\n  };\r\n\r\n  const onDropFile = (e) => {\r\n    e.preventDefault();\r\n    let path = e.dataTransfer.getData(\"Text\");\r\n    handleFileChange(true, path);\r\n    setShowSplitscreenDropzone(false);\r\n  };\r\n\r\n  const setActiveView = (currentFileId) => {\r\n    if (activeFileId === currentFileId) return;\r\n    setActiveFileId(currentFileId);\r\n  };\r\n\r\n  const getSplitscreenGridLayout = () => {\r\n    return splitscreenFileIds.length === 4\r\n      ? 6\r\n      : splitscreenFileIds.length > 2\r\n      ? 4\r\n      : splitscreenFileIds.length > 1\r\n      ? 6\r\n      : 12;\r\n  };\r\n\r\n  const getSplitscreenGridLayoutHeight = () => {\r\n    return splitscreenFileIds.length === 4\r\n      ? \"50%\"\r\n      : splitscreenFileIds.length > 6\r\n      ? \"33.333333333%\"\r\n      : splitscreenFileIds.length > 3\r\n      ? \"50%\"\r\n      : \"100%\";\r\n  };\r\n\r\n  return (\r\n    <FileViewerContext.Provider value={context}>\r\n      <Grid container style={{ ...styles.root }}>\r\n        <Grid\r\n          container\r\n          style={{\r\n            ...styles.rendererGridRoot,\r\n            flexBasis: \"calc(100% - \" + (treeWidth + previewWidth) + \"px)\",\r\n          }}\r\n          onDragEnter={() => {\r\n            setShowSplitscreenDropzone(true);\r\n          }}\r\n          onDragLeave={() => {\r\n            setShowSplitscreenDropzone(false);\r\n          }}\r\n          onDragOver={(e) => e.preventDefault()}\r\n          onDrop={(e) => {\r\n            onDropFile(e);\r\n          }}\r\n          key={containerKey}\r\n        >\r\n          {showSplitscreenDropzone && (\r\n            <div style={{ ...styles.dropfieldRoot }}>\r\n              Drop file here for split screen.\r\n            </div>\r\n          )}\r\n          {splitscreenFileIds.map((currentFileId, index) => (\r\n            <Grid\r\n              item\r\n              key={index}\r\n              xs={getSplitscreenGridLayout()}\r\n              style={{\r\n                ...styles.splitscreenGridRoot,\r\n                border: splitscreenFileIds.length > 1 && \"1px solid\",\r\n                height: getSplitscreenGridLayoutHeight(),\r\n                zIndex: currentFileId === activeFileId ? \"0\" : \"1\",\r\n              }}\r\n              onClick={\r\n                splitscreenFileIds.length > 1\r\n                  ? () => setActiveView(currentFileId)\r\n                  : undefined\r\n              }\r\n            >\r\n              <React.Fragment>\r\n                {currentFileId === activeFileId &&\r\n                  splitscreenFileIds.length > 1 && (\r\n                    <div style={{ ...styles.activeIndicatorBorder }} />\r\n                  )}\r\n                {splitscreenFileIds.length > 1 && (\r\n                  <Tooltip title={\"Exclude Scene\"}>\r\n                    <IconButton\r\n                      style={{ ...styles.excludeButton, color: \"#666\" }}\r\n                      size=\"small\"\r\n                      onClick={(e) => onExcludeSplitscreen(index, e)}\r\n                    >\r\n                      <RemoveCircleIcon />\r\n                    </IconButton>\r\n                  </Tooltip>\r\n                )}\r\n                {/* {splitscreenFileIds.length > 1 && (\r\n                  <Tooltip title={\"Chain Scene\"}>\r\n                    <IconButton\r\n                      style={{ ...styles.attachButton }}\r\n                      size=\"small\"\r\n                      onClick={(e) =>\r\n                        // this.onChainSplitscreen(index, currentFileId, e)\r\n                        console.log(\"chain\", e)\r\n                      }\r\n                    >\r\n                      {currentFileId === activeFileId ? ( // this.chainList[index]\r\n                        <LinkIcon style={{ color: \"#0673C1\" }} />\r\n                      ) : (\r\n                        <LinkOffIcon />\r\n                      )}\r\n                    </IconButton>\r\n                  </Tooltip>\r\n                )} */}\r\n                <FileRenderer\r\n                  currentFileId={currentFileId}\r\n                  index={index}\r\n                  getMousePosition={getMousePosition}\r\n                />\r\n              </React.Fragment>\r\n            </Grid>\r\n          ))}\r\n        </Grid>\r\n        <FileToolBar\r\n          triggerZoomAction={triggerZoomAction}\r\n          onSaveScreenshot={onSaveScreenshot}\r\n          updateDimensions={updateDimensions}\r\n          splitscreenCount={splitscreenFileIds.length}\r\n          rendererRef={rendererDict[activeFileId]}\r\n        />\r\n        <div>\r\n          <LocalVerticalResizeBorder\r\n            leftBorder={true}\r\n            targetWidth={previewWidth}\r\n            min={0}\r\n            resizeWidth={(newWidth) => {\r\n              setPreviewWidth(newWidth);\r\n            }}\r\n          />\r\n        </div>\r\n        <ImagePreview />\r\n        <div>\r\n          <LocalVerticalResizeBorder\r\n            leftBorder={true}\r\n            targetWidth={treeWidth}\r\n            min={0}\r\n            resizeWidth={(newWidth) => {\r\n              setTreeWidth(newWidth);\r\n            }}\r\n          />\r\n        </div>\r\n        <Foldertree />\r\n      </Grid>\r\n    </FileViewerContext.Provider>\r\n  );\r\n}\r\n\r\nFileViewer.propTypes = {\r\n  persistentStorage: PropTypes.object,\r\n  tiles: PropTypes.object,\r\n};\r\n\r\nexport default withPersistentStorage(withTiles(FileViewer));\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport { TextValidator } from \"react-material-ui-form-validator\";\r\nimport classNames from \"classnames\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n\r\nimport SearchIcon from \"@mui/icons-material/Search\";\r\n\r\nimport {\r\n  DialogContent,\r\n  ImageListItem,\r\n  ImageList,\r\n  ImageListItemBar,\r\n  Grid,\r\n  FormHelperText,\r\n  TextField,\r\n} from \"@mui/material\";\r\n\r\nconst styles = () => ({\r\n  dialogContent: {\r\n    paddingTop: 0,\r\n    maxWidth: 900,\r\n    height: 562,\r\n  },\r\n  tileBar: {\r\n    whiteSpace: \"normal !important\",\r\n  },\r\n  projectTile: {\r\n    cursor: \"pointer\",\r\n    padding: 5,\r\n    overflow: \"hidden\",\r\n    border: \"1px solid black\",\r\n    \"&:hover\": {\r\n      background: \"#AAA\",\r\n    },\r\n  },\r\n  projectTileSelected: {\r\n    background: \"#1BA1E2!important\",\r\n  },\r\n  projectTilesList: {\r\n    maxHeight: 437,\r\n    padding: 3,\r\n  },\r\n  expiredMarker: {\r\n    color: \"red\",\r\n    border: \"2px solid red\",\r\n    position: \"absolute\",\r\n    top: 5,\r\n    right: 5,\r\n    zIndex: 1,\r\n    background: \"rgba(255,255,255,0.9)\",\r\n    padding: \"2px 5px 5px 5px\",\r\n  },\r\n  expiringMarker: {\r\n    color: \"darkorange\",\r\n    border: \"2px solid darkorange\",\r\n    position: \"absolute\",\r\n    top: 8,\r\n    right: 8,\r\n    zIndex: 1,\r\n    background: \"rgba(255,255,255,0.9)\",\r\n    padding: \"2px 5px 5px 5px\",\r\n    lineHeight: \"16px\",\r\n  },\r\n});\r\n\r\nclass StepProjectModuleSelection extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n    this.state = {\r\n      searchText: \"\",\r\n    };\r\n    this.imageListItemRefs = [];\r\n  }\r\n\r\n  onChangeFilter = (e) => {\r\n    let searchText = e.target.value;\r\n    this.setState({ searchText });\r\n    this.imageListItemRefs = [];\r\n  };\r\n\r\n  isInView = (el) => {\r\n    if (\r\n      !this.imageList ||\r\n      this.imageList.getBoundingClientRect().height === 0\r\n    ) {\r\n      this.imageList = document.getElementById(\"ImageList\");\r\n      if (\r\n        this.imageList &&\r\n        this.imageList.getAttribute(\"listener\") !== \"true\"\r\n      ) {\r\n        this.imageList.addEventListener(\"scroll\", this.handleImageListScroll);\r\n      }\r\n    }\r\n    let result = false;\r\n    if (this.imageList && el) {\r\n      let parentTop = this.imageList.getBoundingClientRect().top;\r\n      let parentHeight = this.imageList.getBoundingClientRect().height;\r\n      let elTop = el.getBoundingClientRect().top;\r\n      let elHeight = el.getBoundingClientRect().height;\r\n\r\n      result = elTop + elHeight > parentTop && elTop < parentTop + parentHeight;\r\n    }\r\n    return result;\r\n  };\r\n\r\n  handleImageListScroll = () => {\r\n    this.forceUpdate();\r\n  };\r\n\r\n  render() {\r\n    const {\r\n      classes,\r\n      availableTypes,\r\n      projectType,\r\n      onProjectType,\r\n      name,\r\n      onChangeName,\r\n      onSaveName,\r\n    } = this.props;\r\n\r\n    // Check for selected histo modules.\r\n    let isHistoModule =\r\n      projectType.includes(\"HistoClassification\") ||\r\n      projectType.includes(\"HistoPointCounting\");\r\n\r\n    return (\r\n      <DialogContent className={classes.dialogContent}>\r\n        <Grid container spacing={3}>\r\n          <Grid item xs={12} sm={8}>\r\n            <TextValidator\r\n              id=\"TextValidatorProjectName\"\r\n              disabled={isHistoModule}\r\n              fullWidth\r\n              errorMessages={[\"This field is required\"]}\r\n              label=\"Enter project name\"\r\n              margin=\"normal\"\r\n              onBlur={(e) => onSaveName(e.target.value)}\r\n              onChange={(e) => onChangeName(e.target.value)}\r\n              style={{ marginTop: 0 }}\r\n              type=\"text\"\r\n              validators={isHistoModule ? [] : [\"required\"]}\r\n              value={isHistoModule ? \"Will be filled in automatically\" : name}\r\n              variant=\"standard\"\r\n              // select all text if component is defined\r\n              onFocus={(e) => e.target.select()}\r\n            />\r\n          </Grid>\r\n          <Grid item xs={12} sm={4}>\r\n            <div style={{ position: \"relative\" }}>\r\n              <SearchIcon\r\n                style={{\r\n                  display: \"block\",\r\n                  position: \"absolute\",\r\n                  top: 0,\r\n                  left: 0,\r\n                  fill: \"lightgray\",\r\n                  marginTop: 20,\r\n                }}\r\n              />\r\n              <TextField\r\n                id=\"TextFieldSearchText\"\r\n                autoFocus\r\n                variant=\"standard\"\r\n                fullWidth\r\n                style={{\r\n                  marginLeft: 30,\r\n                  width: \"calc(100% - 30px)\",\r\n                  marginTop: 0,\r\n                  display: \"inline-block\",\r\n                }}\r\n                key={\"searchText\"}\r\n                margin=\"normal\"\r\n                label={\"Search Modules\"}\r\n                value={this.state.searchText}\r\n                onChange={this.onChangeFilter}\r\n              />\r\n            </div>\r\n          </Grid>\r\n        </Grid>\r\n\r\n        <FormHelperText style={{ marginBottom: 10 }}>\r\n          Project Type\r\n        </FormHelperText>\r\n        <ImageList\r\n          id={\"ImageList\"}\r\n          ref={this.imageListRef}\r\n          rowHeight={215}\r\n          className={classes.projectTilesList}\r\n          spacing={8}\r\n          cols={3}\r\n        >\r\n          {availableTypes\r\n            .filter((row) => {\r\n              let searchContent = row.label.toLowerCase();\r\n              if (row.projectProperties.Hidden) return false;\r\n              let toSearch = this.state.searchText.toLowerCase();\r\n              return searchContent.includes(toSearch);\r\n            })\r\n            .map((availableType) => (\r\n              <ImageListItem\r\n                ref={(el) => {\r\n                  if (!this.imageListItemRefs[availableType.name]) {\r\n                    this.imageListItemRefs[availableType.name] = el;\r\n                    this.forceUpdate();\r\n                  }\r\n                }}\r\n                key={availableType.name}\r\n                onClick={() => onProjectType(availableType)}\r\n                className={classNames(\r\n                  classes.projectTile,\r\n                  projectType === availableType.name &&\r\n                    classes.projectTileSelected\r\n                )}\r\n              >\r\n                {availableType.projectProperties.WIP && (\r\n                  <div className={classes.expiringMarker}>WIP</div>\r\n                )}\r\n                {availableType.isValid === false &&\r\n                  availableType.expirationDate && (\r\n                    <div className={classes.expiredMarker}>\r\n                      Expired on{\" \"}\r\n                      {availableType.expirationDate.replace(\"T00:00:00\", \"\")}!\r\n                    </div>\r\n                  )}\r\n                {availableType.isValid && availableType.expiresInDays < 32 && (\r\n                  <div className={classes.expiringMarker}>\r\n                    Expires in {availableType.expiresInDays} days!\r\n                  </div>\r\n                )}\r\n\r\n                {this.isInView(this.imageListItemRefs[availableType.name]) && (\r\n                  <img\r\n                    src={`data:image/jpeg;base64,${availableType.image}`}\r\n                    alt={availableType.name}\r\n                    className={classes.tileImage}\r\n                  />\r\n                )}\r\n\r\n                <ImageListItemBar\r\n                  className={classes.titleBar}\r\n                  title={availableType.label}\r\n                />\r\n\r\n                {/* <div className={classes.tileBar}>{availableType.label}</div> */}\r\n              </ImageListItem>\r\n            ))}\r\n        </ImageList>\r\n      </DialogContent>\r\n    );\r\n  }\r\n}\r\n\r\nStepProjectModuleSelection.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  name: PropTypes.string,\r\n  projectType: PropTypes.string,\r\n  onChangeName: PropTypes.func,\r\n  onSaveName: PropTypes.func,\r\n  availableTypes: PropTypes.array,\r\n  onProjectType: PropTypes.func,\r\n};\r\n\r\nexport default withStyles(styles)(StepProjectModuleSelection);\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport withStyles from \"@mui/styles/withStyles\";\r\nimport {\r\n  TextField,\r\n  MenuItem,\r\n  FormControl,\r\n  Checkbox,\r\n  RadioGroup,\r\n  FormControlLabel,\r\n  FormLabel,\r\n} from \"@mui/material\";\r\n\r\nconst styles = {\r\n  paddingContainer: {\r\n    padding: 10,\r\n  },\r\n  formItem: {\r\n    width: \"100%\",\r\n    marginBottom: 20,\r\n  },\r\n  numberInput: {\r\n    width: 50,\r\n    marginRight: 10,\r\n  },\r\n  applyButton: {\r\n    width: \"100%\",\r\n  },\r\n  hidden: {\r\n    display: \"none\",\r\n  },\r\n};\r\n\r\nclass ProteomSettings extends Component {\r\n  render() {\r\n    const { classes, metaData, projectStringProperties, onChangeMetaData } =\r\n      this.props;\r\n    if (typeof projectStringProperties === \"undefined\") return <div />;\r\n    return (\r\n      <div className={classes.paddingContainer}>\r\n        <FormControl className={classes.formItem}>\r\n          <TextField\r\n            name=\"Textfield\"\r\n            select\r\n            label=\"Channel\"\r\n            onChange={(e) => onChangeMetaData(\"Channel\", e.target.value)}\r\n            value={metaData.Channel}\r\n          >\r\n            {projectStringProperties.Channel.split(\",\").map((value, index) => (\r\n              <MenuItem key={index} value={value}>\r\n                {value}\r\n              </MenuItem>\r\n            ))}\r\n          </TextField>\r\n        </FormControl>\r\n\r\n        <FormControl className={classes.formItem}>\r\n          <TextField\r\n            name=\"Textfield\"\r\n            select\r\n            label=\"Proteome\"\r\n            onChange={(e) => onChangeMetaData(\"Proteome\", e.target.value)}\r\n            value={metaData.Proteome}\r\n          >\r\n            {projectStringProperties.Proteome.split(\",\").map((value, index) => (\r\n              <MenuItem key={index} value={value}>\r\n                {value}\r\n              </MenuItem>\r\n            ))}\r\n          </TextField>\r\n        </FormControl>\r\n\r\n        <FormControl component=\"fieldset\" className={classes.hidden}>\r\n          <FormLabel component=\"legend\">Epitope type</FormLabel>\r\n          <RadioGroup\r\n            row\r\n            aria-label=\"Epitope type\"\r\n            name=\"epitpetype\"\r\n            defaultValue=\"continuous\"\r\n          >\r\n            <FormControlLabel\r\n              value=\"continuous\"\r\n              control={\r\n                <Checkbox\r\n                  name=\"CheckboxContinuous\"\r\n                  onChange={(e) =>\r\n                    onChangeMetaData(\"Continues\", e.currentTarget.checked)\r\n                  }\r\n                  checked={Boolean(metaData.Continues)}\r\n                />\r\n              }\r\n              label=\"Continuous\"\r\n            />\r\n            <FormControlLabel\r\n              value=\"discontinuous\"\r\n              control={\r\n                <Checkbox\r\n                  name=\"CheckboxDiscontinuous\"\r\n                  onChange={(e) =>\r\n                    onChangeMetaData(\"Discontinues\", e.currentTarget.checked)\r\n                  }\r\n                  checked={Boolean(metaData.Discontinues)}\r\n                />\r\n              }\r\n              label=\"Discontinuous\"\r\n            />\r\n          </RadioGroup>\r\n        </FormControl>\r\n        <FormControl component=\"fieldset\" className={classes.formItem}>\r\n          <FormLabel component=\"legend\">Epitope length</FormLabel>\r\n          <div>\r\n            <TextField\r\n              name=\"Textfield\"\r\n              style={{ width: 80 }}\r\n              type=\"number\"\r\n              label=\"min\"\r\n              onChange={(e) => {\r\n                if (e.target.value < metaData.EpitopeLengthMax) {\r\n                  onChangeMetaData(\"EpitopeLengthMin\", e.target.value);\r\n                }\r\n              }}\r\n              value={metaData.EpitopeLengthMin}\r\n              className={classes.numberInput}\r\n            />\r\n            <TextField\r\n              name=\"Textfield\"\r\n              style={{ width: 80 }}\r\n              type=\"Number\"\r\n              label=\"max\"\r\n              onChange={(e) => {\r\n                if (e.target.value > metaData.EpitopeLengthMin) {\r\n                  onChangeMetaData(\"EpitopeLengthMax\", e.target.value);\r\n                }\r\n              }}\r\n              value={metaData.EpitopeLengthMax}\r\n              className={classes.numberInput}\r\n            />\r\n          </div>\r\n        </FormControl>\r\n        <FormControl component=\"fieldset\" className={classes.formItem}>\r\n          <FormLabel component=\"legend\">\r\n            Minimum score (do not show results with lower score)\r\n          </FormLabel>\r\n          <div>\r\n            <TextField\r\n              name=\"Textfield\"\r\n              style={{ width: 80 }}\r\n              type=\"number\"\r\n              label=\"min\"\r\n              onChange={(e) => onChangeMetaData(\"MinScore\", e.target.value)}\r\n              inputProps={{ step: \"0.01\" }}\r\n              value={metaData.MinScore}\r\n              className={classes.numberInput}\r\n            />\r\n          </div>\r\n        </FormControl>\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nProteomSettings.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  metaData: PropTypes.object,\r\n  projectProperties: PropTypes.object,\r\n  projectStringProperties: PropTypes.object,\r\n  onChangeMetaData: PropTypes.func,\r\n};\r\n\r\nexport default withStyles(styles)(ProteomSettings);\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport ProteomSettings from \"../../../proteomViewer/components/ProteomSettings\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n\r\nimport {\r\n  DialogContent,\r\n  TextField,\r\n  FormHelperText,\r\n  FormControlLabel,\r\n  Checkbox,\r\n} from \"@mui/material\";\r\n\r\nconst styles = () => ({\r\n  root: {},\r\n  dialogContent: {\r\n    paddingTop: 0,\r\n    maxWidth: 900,\r\n    height: 562,\r\n  },\r\n});\r\n\r\nclass StepMetaData extends Component {\r\n  render() {\r\n    const {\r\n      classes,\r\n      formData,\r\n      onChangeMetaData,\r\n      projectProperties,\r\n      projectStringProperties,\r\n    } = this.props;\r\n    const metaData = formData.metaData;\r\n    return (\r\n      <DialogContent className={classes.dialogContent}>\r\n        <FormHelperText style={{ marginBottom: 10 }}>\r\n          Meta Data for Project !\r\n        </FormHelperText>\r\n        {formData.projectType.includes(\"ProteomeAnalysis\") ? (\r\n          <ProteomSettings\r\n            metaData={metaData}\r\n            projectProperties={projectProperties}\r\n            projectStringProperties={projectStringProperties}\r\n            onChangeMetaData={this.props.onChangeMetaData}\r\n          />\r\n        ) : (\r\n          Object.keys(metaData).map((metaField, i) => (\r\n            <div key={i} style={{ width: \"100%\", position: \"relative\" }}>\r\n              {metaData[metaField] === true || metaData[metaField] === false ? (\r\n                <FormControlLabel\r\n                  control={\r\n                    <Checkbox\r\n                      checked={metaData[metaField]}\r\n                      onChange={(e) =>\r\n                        onChangeMetaData(metaField, e.currentTarget.checked)\r\n                      }\r\n                      name=\"checkedB\"\r\n                      color=\"primary\"\r\n                    />\r\n                  }\r\n                  label={metaField}\r\n                />\r\n              ) : (\r\n                <TextField\r\n                  fullWidth\r\n                  name=\"Textfield\"\r\n                  style={{ width: \"calc(100% - 10px)\", marginLeft: 6 }}\r\n                  key={metaField}\r\n                  margin=\"normal\"\r\n                  label={metaField}\r\n                  value={metaData[metaField]}\r\n                  onChange={(e) => onChangeMetaData(metaField, e.target.value)}\r\n                />\r\n              )}\r\n              {/* <IconButton\r\n              style={{ position: \"absolute\", bottom: 0, right: 0 }}\r\n              onClick={() => onChangeMetaData(metaField, null)}\r\n            >\r\n              <Delete />\r\n            </IconButton> */}\r\n            </div>\r\n          ))\r\n        )}\r\n      </DialogContent>\r\n    );\r\n  }\r\n}\r\n\r\nStepMetaData.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  formData: PropTypes.object.isRequired,\r\n  projectProperties: PropTypes.object,\r\n  projectStringProperties: PropTypes.object,\r\n  onChangeMetaData: PropTypes.func,\r\n};\r\n\r\nexport default withStyles(styles)(StepMetaData);\r\n","// Framework imports\r\nimport React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport { withRouter } from \"react-router-dom\";\r\nimport { ValidatorForm } from \"react-material-ui-form-validator\";\r\n\r\n// External packages\r\nimport {\r\n  Button,\r\n  Dialog,\r\n  DialogTitle,\r\n  MobileStepper,\r\n  Divider,\r\n} from \"@mui/material\";\r\nimport { KeyboardArrowLeft, KeyboardArrowRight } from \"@mui/icons-material\";\r\n\r\n// HSA modules\r\nimport Backend from \"../../common/utils/Backend\";\r\nimport { viewerType } from \"../../common/utils/Utils\";\r\nimport { authenticationService } from \"../../common/services\";\r\n\r\nimport StepProjectModuleSelection from \"./CreateProjectdialogComponents/StepProjectModuleSelection\";\r\nimport StepMetaData from \"./CreateProjectdialogComponents/StepMetaData\";\r\nimport StepFileSelection from \"./CreateProjectdialogComponents/StepFileSelection\";\r\nimport { withStyles } from \"@mui/styles\";\r\n\r\nconst styles = {\r\n  divider: {\r\n    height: \"1px\", // Modify this to adjust the thickness\r\n    backgroundColor: \"rgb(148,148,148)\", // You can also change the color here\r\n  },\r\n};\r\nclass CreateProjectDialog extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n    this.state = {\r\n      submitted: false,\r\n      activeStep: 0,\r\n      projectTypes: [],\r\n      formData: {\r\n        name: props.newdefaultname,\r\n        projectType: \"\",\r\n        metaData: {},\r\n        files: [],\r\n        projectProperties: {},\r\n        projectStringProperties: {},\r\n        groups: [],\r\n      },\r\n    };\r\n\r\n    this.user = null;\r\n\r\n    Backend.loadAvailableProjectTypes((projectTypes) => {\r\n      const { formData } = this.state;\r\n      // order project types by order attribute\r\n      projectTypes = projectTypes.sort((a, b) => a.order - b.order);\r\n      Backend.getLicensingInfo((license) => {\r\n        if (license.activeModules.length > 0) {\r\n          if (license.licenseStatus !== \"VALID\") {\r\n            authenticationService.logout();\r\n            this.props.history.push(\"/licensing\");\r\n            return;\r\n          }\r\n\r\n          projectTypes = projectTypes.map((projectType) => {\r\n            if (license.activeModules.length > 0) {\r\n              let activeModule = license.activeModules.find(\r\n                (x) => x.name === projectType.name\r\n              );\r\n              if (activeModule) {\r\n                projectType.expirationDate = activeModule.expirationDate;\r\n                projectType.isValid = !activeModule.isExpired;\r\n                projectType.expiresInDays = activeModule.expiresInDays;\r\n              } else {\r\n                projectType.isValid = false;\r\n              }\r\n            } else {\r\n              projectType.isValid = true;\r\n            }\r\n            return projectType;\r\n          });\r\n\r\n          projectTypes = projectTypes.filter(\r\n            (projectType) => typeof projectType.expirationDate !== \"undefined\"\r\n          );\r\n          if (projectTypes.length > 0) {\r\n            // select default project type\r\n            let firstValidProjectType = projectTypes.find((pt) => pt.isValid);\r\n            if (firstValidProjectType) {\r\n              formData.projectType = firstValidProjectType.name;\r\n              for (let metaField of projectTypes.find(\r\n                (c) => c.name === formData.projectType\r\n              ).metaData) {\r\n                // use existing value or init dict entry with empty string\r\n                formData.metaData[metaField] =\r\n                  metaField === \"Datum\" || metaField === \"Date\"\r\n                    ? this.getDate()\r\n                    : formData.metaData[metaField] || \"\";\r\n              }\r\n            }\r\n          }\r\n        }\r\n        // write received info into state\r\n        this.setState({\r\n          projectTypes: projectTypes,\r\n          formData,\r\n          metaData: {},\r\n          files: [],\r\n        });\r\n\r\n        Backend.getCurrentUser((user) => {\r\n          // const { formData } = this.state;\r\n          this.user = user;\r\n        });\r\n        Backend.getCurrentUserGroups((response) => {\r\n          let formData = this.state.formData;\r\n          formData.groups = response;\r\n          this.setState({ formData });\r\n        });\r\n      });\r\n    });\r\n  }\r\n\r\n  handleKeyPress = (event) => {\r\n    if (!this.props.open) return;\r\n\r\n    if (event.key === \"Enter\") {\r\n      this.handleNext();\r\n    }\r\n  };\r\n\r\n  componentDidMount = () => {\r\n    document.addEventListener(\"keyup\", this.handleKeyPress);\r\n  };\r\n\r\n  componentWillUnmount = () => {\r\n    document.removeEventListener(\"keyup\", this.handleKeyPress);\r\n  };\r\n\r\n  componentDidUpdate = (prevProps) => {\r\n    // on open dialog\r\n    if (prevProps.open !== this.props.open && this.props.open) {\r\n      const { formData } = this.state;\r\n      if (this.props.project) {\r\n        formData.files = [\r\n          ...new Set(\r\n            this.props.project.previewImageFiles.map(\r\n              (file) => file.relativePath\r\n            )\r\n          ),\r\n        ];\r\n        formData.name = this.props.project.name;\r\n        formData.projectType = this.props.project.type;\r\n      } else {\r\n        formData.files = [];\r\n        formData.name = this.props.newdefaultname;\r\n      }\r\n      this.setState({\r\n        submitted: false,\r\n        activeStep: 0,\r\n        formData,\r\n      });\r\n    }\r\n  };\r\n\r\n  /**\r\n   * Defines what happens when the next button is pressed.\r\n   * When moving a step forward, checks are made to see if the next option is necessary.\r\n   * When finishing the final step, project is created or updated.\r\n   */\r\n  handleNext = () => {\r\n    if (this.props.project && this.state.activeStep === 0) {\r\n      this.onSaveName();\r\n      this.setState({ activeStep: 2 });\r\n      return;\r\n    }\r\n    const { formData } = this.state;\r\n    if (this.state.activeStep >= 2) {\r\n      if (this.state.formData.files.length === 0) {\r\n        return;\r\n      }\r\n      // last step -> submit data\r\n      this.setState({ submitted: true });\r\n      if (this.props.project) {\r\n        //this.onSaveName(this.props.project.name);\r\n        Backend.updateProjectFiles(this.props.project.id, formData, () => {\r\n          this.setState({ submitted: false });\r\n          this.handleClose();\r\n        });\r\n      } else {\r\n        if (\r\n          formData.projectType.includes(\"HistoClassification\") ||\r\n          formData.projectType.includes(\"HistoPointCounting\")\r\n        ) {\r\n          let name = formData.files[0];\r\n          name = name.replace(/\\\\/g, \"/\");\r\n          let name_array = name.split(\"/\");\r\n          name = name_array[name_array.length - 1];\r\n          name = name.split(\".\")[0];\r\n          name_array = name.split(\"-\");\r\n          let i = 0;\r\n          while (i < name_array.length - 1) {\r\n            if (i === 0) {\r\n              name = name_array[i];\r\n            } else {\r\n              name = name + \"-\" + name_array[i];\r\n            }\r\n            i = i + 1;\r\n          }\r\n\r\n          formData.name = name;\r\n          this.setState({ formData: formData });\r\n        }\r\n        Backend.createProject(this.state.formData, (e) => {\r\n          this.setState({ submitted: false });\r\n          this.handleClose();\r\n          if (formData.projectType.includes(\"ProteomeAnalysis\")) {\r\n            Backend.loadProject(\r\n              {\r\n                id: e.projectId,\r\n              },\r\n              (project) => {\r\n                Backend.getCurrentUser((user) => {\r\n                  const projectModel = {\r\n                    name: project.name,\r\n                    user: user.fullName,\r\n                    id: project.id,\r\n                    readableId: project.readableId,\r\n                    metaData: JSON.parse(project.metaData),\r\n                    type: project.type,\r\n                    tools: project.viewerConfig.project.tools,\r\n                    job: project.viewerConfig.project.job,\r\n                    files: project.files,\r\n                  };\r\n                  Backend.saveProject(projectModel, (data) => {\r\n                    if (data.success) {\r\n                      this.props.handleActiveTabChange(0);\r\n                      Backend.setProjectsPending([project.id], () => {\r\n                        console.log(\"job ready to start!\");\r\n                      });\r\n                    }\r\n                  });\r\n                });\r\n              }\r\n            );\r\n          } else {\r\n            this.props.history.push(\r\n              viewerType(formData.projectType) + e.projectId\r\n            );\r\n          }\r\n        });\r\n      }\r\n    } else {\r\n      let nextStep = this.state.activeStep + 1;\r\n      if (formData.projectType === \"\") {\r\n        window.showWarningSnackbar(\"Please select a Project Module!\");\r\n        return;\r\n      }\r\n\r\n      if (nextStep === 1 && Object.keys(formData.metaData).length === 0) {\r\n        nextStep++;\r\n      }\r\n      this.setState({ activeStep: nextStep, formData });\r\n    }\r\n  };\r\n\r\n  handleBack = () => {\r\n    const { formData } = this.state;\r\n    if (this.state.activeStep === 0) {\r\n      this.props.onClose();\r\n    } else {\r\n      if (this.props.project) {\r\n        this.setState({ activeStep: 0 });\r\n        return;\r\n      }\r\n      let prevStep = this.state.activeStep - 1;\r\n\r\n      if (prevStep === 1 && Object.keys(formData.metaData).length === 0) {\r\n        prevStep--;\r\n      }\r\n      formData.files = [];\r\n      this.setState({ activeStep: prevStep, formData: formData });\r\n    }\r\n  };\r\n\r\n  handleClose = () => {\r\n    this.props.onClose();\r\n  };\r\n\r\n  uploadFile() {\r\n    Backend.uploadFile(\r\n      this.state.files[0],\r\n      (e) => {\r\n        this.setState({ completed: e });\r\n      },\r\n      () => {\r\n        this.handleClose();\r\n      }\r\n    );\r\n  }\r\n\r\n  onChangeName = (e) => {\r\n    const { formData } = this.state;\r\n    formData.name = e;\r\n    this.setState({ formData });\r\n    if (this.props.project) {\r\n      let project = this.props.project;\r\n      project.name = e;\r\n    }\r\n  };\r\n\r\n  onSaveName = () => {\r\n    if (this.props.project) {\r\n      Backend.renameProject(\r\n        this.props.project.id,\r\n        this.props.project.name,\r\n        () => {\r\n          console.log(\"project name changed to:\", this.props.project.name);\r\n        }\r\n      );\r\n    }\r\n  };\r\n\r\n  /**\r\n   * Fills in project parameters for saving.\r\n   * Checks for valid expiration date and gives expiration notice.\r\n   * @param {Object} e Selected module from step 0, including properties.\r\n   */\r\n  onProjectType = (e) => {\r\n    let formData = this.state.formData;\r\n    formData.projectProperties = e.projectProperties;\r\n    formData.projectStringProperties = e.ProjectStringProperties;\r\n    formData.metaData = e.metaData;\r\n    formData.toolsInProject = e.toolsInProject;\r\n    this.setState({ formData: formData });\r\n\r\n    if (!e.isValid && e.expirationDate) {\r\n      window.openWarningDialog(\r\n        \"This Project Module expired on \" +\r\n          e.expirationDate.replace(\"T00:00:00\", \"\") +\r\n          \".\\nPlease contact HS Analysis GmbH to updated the licence!\"\r\n      );\r\n      return;\r\n    }\r\n    if (this.props.project) {\r\n      window.openWarningDialog(\r\n        \"Project already created and the Project Type can't be changed afterwards.\\nPlease create a new Project instead.\"\r\n      );\r\n    } else {\r\n      const { formData, projectTypes } = this.state;\r\n      formData.projectType = e.name;\r\n      formData.metaData = {};\r\n\r\n      let selectedProjectType = projectTypes.find(\r\n        (pt) => pt.name === formData.projectType\r\n      );\r\n      if (\r\n        (\"selectedProjectType\",\r\n        selectedProjectType &&\r\n          selectedProjectType.name.includes(\"ProteomeAnalysis\"))\r\n      ) {\r\n        formData.projectStringProperties =\r\n          selectedProjectType.projectStringProperties;\r\n        formData.projectProperties = selectedProjectType.projectProperties;\r\n        for (const [key, value] of Object.entries(\r\n          formData.projectStringProperties\r\n        )) {\r\n          formData.metaData[key] = value.split(\",\")[0];\r\n        }\r\n        for (const [key, value] of Object.entries(formData.projectProperties)) {\r\n          formData.metaData[key] = value;\r\n        }\r\n      }\r\n\r\n      for (let metaField of projectTypes.find((c) => c.name === e.name)\r\n        .metaData) {\r\n        // use existing value or init dict entry with empty string\r\n        formData.metaData[metaField] =\r\n          metaField === \"Datum\" || metaField === \"Date\"\r\n            ? this.getDate()\r\n            : formData.metaData[metaField] || \"\";\r\n      }\r\n      this.setState({ formData });\r\n    }\r\n  };\r\n\r\n  onChangeMetaData = (field, e) => {\r\n    const { formData } = this.state;\r\n    if (e === null) {\r\n      // delete field\r\n      delete formData.metaData[field];\r\n    } else {\r\n      // update fiel value\r\n      formData.metaData[field] = e;\r\n    }\r\n    this.setState({ formData });\r\n  };\r\n\r\n  onChangeFiles = (e) => {\r\n    const { formData } = this.state;\r\n    formData.files = e;\r\n    this.setState({ formData });\r\n  };\r\n\r\n  getDate = () => {\r\n    let today = new Date();\r\n    let dd = String(today.getDate()).padStart(2, \"0\");\r\n    let mm = String(today.getMonth() + 1).padStart(2, \"0\");\r\n    let yyyy = today.getFullYear();\r\n    today = dd + \".\" + mm + \".\" + yyyy;\r\n    return today;\r\n  };\r\n\r\n  render() {\r\n    const { classes } = this.props;\r\n    const { activeStep, formData, projectTypes, submitted } = this.state;\r\n\r\n    return (\r\n      <Dialog onClose={this.handleClose} open={this.props.open} maxWidth=\"lg\">\r\n        <DialogTitle>Create New Project</DialogTitle>\r\n        <Divider className={classes.divider} />\r\n        <br />\r\n        <ValidatorForm onSubmit={this.handleNext} style={{ width: 800 }}>\r\n          {activeStep === 0 && (\r\n            <StepProjectModuleSelection\r\n              key=\"0\"\r\n              name={formData.name}\r\n              projectType={formData.projectType}\r\n              onChangeName={this.onChangeName}\r\n              onSaveName={this.onSaveName}\r\n              availableTypes={projectTypes}\r\n              onProjectType={this.onProjectType}\r\n            />\r\n          )}\r\n          {activeStep === 1 && (\r\n            <StepMetaData\r\n              key=\"1\"\r\n              formData={formData}\r\n              projectStringProperties={formData.projectStringProperties}\r\n              projectProperties={formData.projectProperties}\r\n              onChangeMetaData={this.onChangeMetaData}\r\n            />\r\n          )}\r\n          {activeStep === 2 && (\r\n            <StepFileSelection\r\n              key=\"2\"\r\n              selectionTarget=\"Project\"\r\n              project={this.props.project}\r\n              formData={formData}\r\n              onChangeFiles={this.onChangeFiles}\r\n            />\r\n          )}\r\n          <MobileStepper\r\n            variant=\"dots\"\r\n            steps={3}\r\n            position=\"static\"\r\n            activeStep={activeStep}\r\n            nextButton={\r\n              <Button\r\n                size=\"small\"\r\n                type=\"submit\"\r\n                disabled={\r\n                  submitted ||\r\n                  (this.state.activeStep === 2 &&\r\n                    this.state.formData.files.length === 0)\r\n                }\r\n              >\r\n                {/* Change Next Button depending on if you're editing a project\r\n                 or creating a new one */}\r\n                {this.props.project && this.state.activeStep > 1\r\n                  ? \"Save\"\r\n                  : \"Next\"}\r\n\r\n                <KeyboardArrowRight />\r\n              </Button>\r\n            }\r\n            backButton={\r\n              <Button\r\n                size=\"small\"\r\n                onClick={this.handleBack}\r\n                disabled={!this.props.project && activeStep === 0}\r\n              >\r\n                <KeyboardArrowLeft />\r\n                {\"Back\"}\r\n              </Button>\r\n            }\r\n          />\r\n        </ValidatorForm>\r\n      </Dialog>\r\n    );\r\n  }\r\n}\r\n\r\nCreateProjectDialog.propTypes = {\r\n  project: PropTypes.object,\r\n  onClose: PropTypes.func,\r\n  selectedValue: PropTypes.string,\r\n  newdefaultname: PropTypes.string,\r\n  handleActiveTabChange: PropTypes.func,\r\n  open: PropTypes.bool,\r\n  history: PropTypes.object,\r\n  classes: PropTypes.object.isRequired,\r\n};\r\n\r\nexport default withRouter(withStyles(styles)(CreateProjectDialog));\r\n","// Framework imports\r\nimport React, { useState, useRef, useEffect } from \"react\";\r\nimport { PropTypes } from \"prop-types\";\r\n\r\n/**\r\n * Only load the visible children of a (long) list.\r\n * @param {Array} children Children to be rendered only whne in rendering area.\r\n * @param {number} maxContainerHeight The maximum allowed height of the container in pixels.\r\n * @param {number} elementHeight The height of a single element. all elements assumed to be the same height.\r\n * @param {number} offsetElements Optional. The number of elements to be preloaded outside of visible area. Defaults to 2.\r\n * @returns\r\n */\r\nconst LazyRender = React.forwardRef((props, ref) => {\r\n  const {\r\n    children,\r\n    maxContainerHeight,\r\n    elementHeight,\r\n    offsetElements = 2,\r\n  } = props;\r\n  const containerRef = useRef();\r\n\r\n  const [scrollPositionTop, setScrollPositionTop] = useState(0);\r\n  const [containerHeight, setContainerHeight] = useState(100);\r\n\r\n  useEffect(() => {\r\n    setContainerHeight(containerRef.current.clientHeight);\r\n    containerRef.current.addEventListener(\"scroll\", (e) => handleScroll(e));\r\n    return containerRef.current.removeEventListener(\"scroll\", (e) =>\r\n      handleScroll(e)\r\n    );\r\n  }, []);\r\n\r\n  useEffect(() => {\r\n    setContainerHeight(containerRef.current.clientHeight);\r\n  }, [children.length]);\r\n\r\n  /**\r\n   * Update position and container properties on scroll.\r\n   * @param {event} e Scrollevent.\r\n   */\r\n  const handleScroll = (e) => {\r\n    setScrollPositionTop(e.target.scrollTop);\r\n  };\r\n\r\n  /**\r\n   * Scrolls smoothly to the bottom of the list\r\n   */\r\n  const scrollBottom = () => {\r\n    if (containerRef.current) {\r\n      const { scrollHeight, clientHeight } = containerRef.current;\r\n      containerRef.current.scrollTo({\r\n        top: scrollHeight - clientHeight,\r\n      });\r\n    }\r\n  };\r\n\r\n  /**\r\n   * The placeholder to put in place of a non-rendered element\r\n   */\r\n  const placeholder = (key) => (\r\n    <div key={key} style={{ height: elementHeight }}></div>\r\n  );\r\n\r\n  /**\r\n   * Determine if an element should be rendered depending on its position.\r\n   * @param {int} idx The index of the element in an arrray.\r\n   * @returns {Boolean} Whether an element sould be rendered.\r\n   */\r\n  function isInView(idx) {\r\n    const pos = idx * elementHeight;\r\n\r\n    const minRendered = scrollPositionTop - offsetElements * elementHeight;\r\n    const maxRendered =\r\n      scrollPositionTop + containerHeight + offsetElements * elementHeight;\r\n\r\n    const shouldBeRendered = pos >= minRendered && pos <= maxRendered;\r\n    return shouldBeRendered;\r\n  }\r\n\r\n  // make scrollBottom() callable from parent component\r\n  React.useImperativeHandle(ref, () => ({\r\n    scrollBottom,\r\n  }));\r\n\r\n  return (\r\n    <div\r\n      style={{\r\n        overflow: \"auto\",\r\n        maxHeight: maxContainerHeight,\r\n      }}\r\n      ref={containerRef}\r\n    >\r\n      {children.map((c, i) => (isInView(i) ? c : placeholder(i)))}\r\n    </div>\r\n  );\r\n});\r\n\r\nLazyRender.propTypes = {\r\n  children: PropTypes.array.isRequired,\r\n  maxContainerHeight: PropTypes.number.isRequired,\r\n  elementHeight: PropTypes.number.isRequired,\r\n  offsetElements: PropTypes.number,\r\n};\r\n\r\nLazyRender.displayName = \"LazyRender\";\r\nexport default LazyRender;\r\n","// Framework imports\r\nimport React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\n// External packages\r\nimport CheckIcon from \"@mui/icons-material/Check\";\r\nimport Accordion from \"@mui/material/Accordion\";\r\nimport AccordionSummary from \"@mui/material/AccordionSummary\";\r\nimport AccordionDetails from \"@mui/material/AccordionDetails\";\r\nimport Button from \"@mui/material/Button\";\r\nimport Dialog from \"@mui/material/Dialog\";\r\nimport DialogActions from \"@mui/material/DialogActions\";\r\nimport DialogContent from \"@mui/material/DialogContent\";\r\nimport DialogContentText from \"@mui/material/DialogContentText\";\r\nimport DialogTitle from \"@mui/material/DialogTitle\";\r\nimport InputAdornment from \"@mui/material/InputAdornment\";\r\nimport TextField from \"@mui/material/TextField\";\r\nimport Tooltip from \"@mui/material/Tooltip\";\r\nimport Typography from \"@mui/material/Typography\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\nimport ContentCopyIcon from \"@mui/icons-material/ContentCopy\";\r\nimport ErrorIcon from \"@mui/icons-material/Error\";\r\n\r\n// HSA imports\r\nimport Backend from \"../../common/utils/Backend\";\r\nimport LazyRender from \"../../common/components/LazyRender\";\r\n\r\nconst styles = () => ({\r\n  root: {},\r\n  dialogContent: {\r\n    paddingTop: 0,\r\n    maxWidth: 900,\r\n    minWidth: 750,\r\n  },\r\n});\r\n\r\n/**\r\n * Enum for project action mode.\r\n */\r\nexport const ProjectActionMode = Object.freeze({\r\n  Import: 0,\r\n  Update: 1,\r\n});\r\n\r\n/**\r\n * Content of the dialog, depending on the project action mode.\r\n */\r\nconst _dialogContent = Object.freeze({\r\n  [ProjectActionMode.Import]: {\r\n    title: \"Map Files of Imported Project\",\r\n    text: \"An exported project does not contain image files, only their respective names. \",\r\n  },\r\n  [ProjectActionMode.Update]: {\r\n    title: \"Re-Map Missing Files\",\r\n    text: \"Not all files previously associated with this project could be found in their original location. \",\r\n  },\r\n});\r\n\r\nclass FindFilesDialog extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n    this.state = {\r\n      formData: props.formData ?? {\r\n        fileMappings: [],\r\n      },\r\n      openAccordion: null,\r\n      dialogIsOpen: Boolean(props.open),\r\n      onSuccess: props.onSuccess ?? (() => {}),\r\n    };\r\n  }\r\n\r\n  /**\r\n   * Open/Show FindFilesDialog.\r\n   * Main way to open this dialog.\r\n   * @param {JSON} formData File mappings, mapping previous to new files.\r\n   */\r\n  show(formData, onSuccess = () => {}) {\r\n    this.setState({ dialogIsOpen: true, formData, onSuccess: onSuccess });\r\n  }\r\n\r\n  /**\r\n   * Close FindFilesDialog. Resets state.\r\n   */\r\n  handleClose = () => {\r\n    this.setState({\r\n      dialogIsOpen: false,\r\n      openAccordion: null,\r\n      formData: {\r\n        fileMappings: [],\r\n        projects: [],\r\n      },\r\n    });\r\n  };\r\n\r\n  /**\r\n   * Submit all updated filepaths to backend for check and - if successfull - project completion.\r\n   */\r\n  handleSubmit = () => {\r\n    const { formData } = this.state;\r\n    const { projectActionMode } = this.props;\r\n    Backend.checkFileMappings(\r\n      formData,\r\n      projectActionMode,\r\n      (res) => {\r\n        // Incomplete file mappings\r\n        if (!res.allUniquelyMapped) {\r\n          window.showWarningSnackbar(\r\n            `Not all files could be uniquely associated. Please adapt the paths of all missing or duplicate paths.`\r\n          );\r\n          this.setState({ formData: res });\r\n          return;\r\n        }\r\n        // Import completed without changes\r\n        this.handleClose();\r\n        this.state.onSuccess();\r\n\r\n        \r\n      },\r\n      // Error\r\n      (err) => {\r\n        console.error(err);\r\n        window.openWarningDialog(err);\r\n      }\r\n    );\r\n  };\r\n\r\n  /**\r\n   * Generates a formatted file list, so that all three types of files may ues the same code.\r\n   * @param {Array} files Files to map to screen.\r\n   * @returns {div} Files mapped and formatted.\r\n   */\r\n  generateFileList(files) {\r\n    return (\r\n      <LazyRender maxContainerHeight={400} elementHeight={150}>\r\n        {files.map((f) => (\r\n          <div key={f.file.id} style={{ marginBottom: 10 }}>\r\n            <TextField\r\n              value={f.file.sourcePath}\r\n              name=\"Textfield\"\r\n              InputProps={{\r\n                endAdornment: f.duplicatePath ? (\r\n                  // Duplicate files\r\n                  <InputAdornment position=\"end\">\r\n                    <Tooltip\r\n                      disableInteractive\r\n                      title=\"Multiple imported files are using this file, please specify unique path.\"\r\n                    >\r\n                      <ContentCopyIcon\r\n                        sx={{ color: \"warning.main\" }}\r\n                        color=\"inherit\"\r\n                      />\r\n                    </Tooltip>\r\n                  </InputAdornment>\r\n                ) : f.found ? (\r\n                  // Files found\r\n                  <InputAdornment position=\"end\">\r\n                    <Tooltip\r\n                      disableInteractive\r\n                      title=\"File automatically found on your disk, no action needed.\"\r\n                    >\r\n                      <CheckIcon\r\n                        sx={{ color: \"success.main\" }}\r\n                        color=\"inherit\"\r\n                      />\r\n                    </Tooltip>\r\n                  </InputAdornment>\r\n                ) : (\r\n                  // Missing files\r\n                  <InputAdornment position=\"end\">\r\n                    <Tooltip\r\n                      disableInteractive\r\n                      title=\"Failed to find any file with this name. Please add file and re-import or specify path.\"\r\n                    >\r\n                      <ErrorIcon sx={{ color: \"error.main\" }} color=\"inherit\" />\r\n                    </Tooltip>\r\n                  </InputAdornment>\r\n                ),\r\n              }}\r\n              disabled\r\n              margin=\"dense\"\r\n              label=\"Old Path\"\r\n              fullWidth\r\n              variant=\"filled\"\r\n            />\r\n            <TextField\r\n              value={f.newPath}\r\n              name=\"Textfield\"\r\n              onChange={(e) => {\r\n                f.newPath = e.target.value;\r\n                this.forceUpdate();\r\n              }}\r\n              margin=\"dense\"\r\n              label=\"New Path\"\r\n              fullWidth\r\n              error={!f.found || f.duplicatePath}\r\n            />\r\n          </div>\r\n        ))}\r\n      </LazyRender>\r\n    );\r\n  }\r\n\r\n  render() {\r\n    const { dialogIsOpen, formData } = this.state;\r\n    const { classes, projectActionMode } = this.props;\r\n    // Only show unique source files, not one per scene of file.\r\n    const uniqueFiles = formData.fileMappings\r\n      .filter(\r\n        (mapping, index, array) =>\r\n          array.findIndex(\r\n            (el) => el.file.sourcePath === mapping.file.sourcePath\r\n          ) === index\r\n      )\r\n      .sort((a, b) => a.file.sourcePath.localeCompare(b.file.sourcePath));\r\n\r\n    const filesFound = uniqueFiles.filter((f) => f.found);\r\n    const duplicates = uniqueFiles.filter((f) => f.duplicatePath);\r\n    const missing = uniqueFiles.filter((f) => !f.found && !f.duplicatePath);\r\n\r\n    return (\r\n      <Dialog onClose={this.handleClose} open={dialogIsOpen} maxWidth=\"lg\">\r\n        <DialogTitle>\r\n          {_dialogContent[projectActionMode].title}\r\n        </DialogTitle>\r\n        <DialogContent className={classes.dialogContent}>\r\n          <DialogContentText>\r\n            {_dialogContent[projectActionMode].text}\r\n            Please select the corresponding files from your hard drive.\r\n          </DialogContentText>\r\n          <Accordion\r\n            expanded={this.state.openAccordion === \"found\"}\r\n            onChange={(_, expanded) => {\r\n              this.setState({ openAccordion: expanded ? \"found\" : null });\r\n            }}\r\n          >\r\n            <AccordionSummary>\r\n              <Typography\r\n                sx={{\r\n                  color:\r\n                    missing.length + duplicates.length == 0\r\n                      ? \"success.main\"\r\n                      : \"inherit\",\r\n                }}\r\n              >{`Files Found (${filesFound.length})`}</Typography>\r\n            </AccordionSummary>\r\n            <AccordionDetails>\r\n              <Typography>\r\n                No further action needed. These files could automatically be\r\n                associated with existing files inside your slides folder.\r\n              </Typography>\r\n              {this.generateFileList(filesFound)}\r\n            </AccordionDetails>\r\n          </Accordion>\r\n          <Accordion\r\n            expanded={this.state.openAccordion === \"missing\"}\r\n            onChange={(_, expanded) => {\r\n              this.setState({ openAccordion: expanded ? \"missing\" : null });\r\n            }}\r\n          >\r\n            <AccordionSummary>\r\n              <Typography\r\n                sx={{ color: missing.length == 0 ? \"inherit\" : \"error.main\" }}\r\n              >{`Files Missing (${missing.length})`}</Typography>\r\n            </AccordionSummary>\r\n            <AccordionDetails>\r\n              <Typography>\r\n                These files could not be automatically found inside your slides\r\n                folder. Perhaps their names have changed or they need to be\r\n                added again. Please insert missing files to the slides folder or\r\n                specify their new name.\r\n              </Typography>\r\n              {this.generateFileList(missing)}\r\n            </AccordionDetails>\r\n          </Accordion>\r\n          <Accordion\r\n            expanded={this.state.openAccordion === \"duplicate\"}\r\n            onChange={(_, expanded) => {\r\n              this.setState({ openAccordion: expanded ? \"duplicate\" : null });\r\n            }}\r\n          >\r\n            <AccordionSummary>\r\n              <Typography\r\n                sx={{\r\n                  color: duplicates.length === 0 ? \"inherit\" : \"error.main\",\r\n                }}\r\n              >{`Duplicate Files (${duplicates.length})`}</Typography>\r\n            </AccordionSummary>\r\n            <AccordionDetails>\r\n              <Typography>\r\n                Multiple of the imported files have been associated with the\r\n                same file inside your slides folder. It could not be\r\n                automatically determined which on is correct, so the first one\r\n                was chosen. It is not allowed to have the same file twice in a\r\n                project, therefore, please inspect all duplicated and specify\r\n                their correct path.\r\n              </Typography>\r\n              {this.generateFileList(duplicates)}\r\n            </AccordionDetails>\r\n          </Accordion>\r\n        </DialogContent>\r\n        <DialogActions>\r\n          <Button onClick={this.handleClose} color=\"primary\">\r\n            Cancel\r\n          </Button>\r\n          <Button onClick={this.handleSubmit} color=\"primary\">\r\n            Ok\r\n          </Button>\r\n        </DialogActions>\r\n      </Dialog>\r\n    );\r\n  }\r\n}\r\n\r\nFindFilesDialog.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  projectActionMode: PropTypes.number.isRequired,\r\n  formData: PropTypes.object,\r\n  open: PropTypes.bool,\r\n  onSuccess: PropTypes.func,\r\n};\r\n\r\nexport default withStyles(styles)(FindFilesDialog);\r\n","import React from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nclass CustomSvgIcon extends React.Component {\r\n  render() {\r\n    const { name, width, height, stroke, vertAlign } = this.props;\r\n    switch (name) {\r\n      case \"GrabCutIcon\":\r\n        return (\r\n          <svg\r\n            xmlns=\"http://www.w3.org/2000/svg\"\r\n            viewBox=\"71.337 278 32.666 34\"\r\n            style={{ isolation: \"isolate\", verticalAlign: vertAlign }}\r\n            width={width}\r\n            height={height}\r\n          >\r\n            <mask id=\"_mask_MjjndE998VThuTWR6sXZOZaDpVlW90eA\">\r\n              <path\r\n                d=\" M 98.857 280.738 C 92.762 277.793 81.511 284.526 79.848 285.855 C 77.596 287.652 75.733 289.156 74.337 290.805 C 72.944 292.465 72.04 294.378 72.001 296.628 C 71.971 298.624 72.587 300.798 73.808 303.397 C 75.826 307.664 80.163 310.67 84.798 311.878 C 89.568 312.316 93.483 311.692 96.857 308.065 C 100.638 303.997 103.96 298.299 103.999 292.129 C 104.006 291.119 104.274 283.591 98.857 280.738 Z \"\r\n                style={{\r\n                  fillRule: \"evenodd\",\r\n                  fill: \"white\",\r\n                  stroke: \"none\",\r\n                }}\r\n              />\r\n            </mask>\r\n            <path\r\n              d=\" M 98.857 280.738 C 92.762 277.793 81.511 284.526 79.848 285.855 C 77.596 287.652 75.733 289.156 74.337 290.805 C 72.944 292.465 72.04 294.378 72.001 296.628 C 71.971 298.624 72.587 300.798 73.808 303.397 C 75.826 307.664 80.163 310.67 84.798 311.878 C 89.568 312.316 93.483 311.692 96.857 308.065 C 100.638 303.997 103.96 298.299 103.999 292.129 C 104.006 291.119 104.274 283.591 98.857 280.738 Z \"\r\n              style={{\r\n                fillRule: \"evenodd\",\r\n                fill: \"none\",\r\n                mask: \"url(#_mask_MjjndE998VThuTWR6sXZOZaDpVlW90eA)\",\r\n                vectorEffect: \"non-scaling-stroke\",\r\n                strokeWidth: \"3.316\", //\"4.182\",\r\n                stroke: \"currentColor\",\r\n                strokeLinejoin: \"miter\",\r\n                strokeLinecap: \"square\",\r\n                strokeMiterlimit: \"3\",\r\n              }}\r\n              stroke={stroke}\r\n            />\r\n            <path\r\n              d=\" M 80.857 291.096 C 82.471 289.217 83.676 288.765 85.857 287.675 C 88.27 286.469 89.97 286 91.857 285.356\"\r\n              style={{\r\n                fill: \"none\",\r\n                vectorEffect: \"non-scaling-stroke\",\r\n                strokeWidth: \"1.5\",\r\n                stroke: \"currentColor\",\r\n                strokeLinejoin: \"miter\",\r\n                strokeLinecap: \"round\",\r\n                strokeMiterlimit: \"3\",\r\n              }}\r\n              stroke={stroke}\r\n            />\r\n            <path\r\n              d=\" M 74.337 286 C 76.153 284.316 76.176 284.083 78.357 282.994 C 80.77 281.788 81.113 281.644 83 281\"\r\n              style={{\r\n                fill: \"none\",\r\n                vectorEffect: \"non-scaling-stroke\",\r\n                strokeWidth: \"1.5\",\r\n                stroke: \"currentColor\",\r\n                strokeLinejoin: \"miter\",\r\n                strokeLinecap: \"round\",\r\n                strokeMiterlimit: \"3\",\r\n              }}\r\n              stroke={stroke}\r\n            />\r\n          </svg>\r\n        );\r\n      case \"SAMIcon\":\r\n        return (\r\n          <svg\r\n            xmlns=\"http://www.w3.org/2000/svg\"\r\n            viewBox=\"71.337 278 32.666 34\"\r\n            style={{ isolation: \"isolate\", verticalAlign: vertAlign }}\r\n            width={width}\r\n            height={height}\r\n          >\r\n            <mask id=\"_mask_MjjndE998VThuTWR6sXZOZaDpVlW90eA\">\r\n              <path\r\n                d=\" M 98.857 280.738 C 92.762 277.793 81.511 284.526 79.848 285.855 C 77.596 287.652 75.733 289.156 74.337 290.805 C 72.944 292.465 72.04 294.378 72.001 296.628 C 71.971 298.624 72.587 300.798 73.808 303.397 C 75.826 307.664 80.163 310.67 84.798 311.878 C 89.568 312.316 93.483 311.692 96.857 308.065 C 100.638 303.997 103.96 298.299 103.999 292.129 C 104.006 291.119 104.274 283.591 98.857 280.738 Z \"\r\n                style={{\r\n                  fillRule: \"evenodd\",\r\n                  fill: \"white\",\r\n                  stroke: \"none\",\r\n                }}\r\n              />\r\n            </mask>\r\n            <path\r\n              d=\" M 98.857 280.738 C 92.762 277.793 81.511 284.526 79.848 285.855 C 77.596 287.652 75.733 289.156 74.337 290.805 C 72.944 292.465 72.04 294.378 72.001 296.628 C 71.971 298.624 72.587 300.798 73.808 303.397 C 75.826 307.664 80.163 310.67 84.798 311.878 C 89.568 312.316 93.483 311.692 96.857 308.065 C 100.638 303.997 103.96 298.299 103.999 292.129 C 104.006 291.119 104.274 283.591 98.857 280.738 Z \"\r\n              style={{\r\n                fillRule: \"evenodd\",\r\n                fill: \"none\",\r\n                mask: \"url(#_mask_MjjndE998VThuTWR6sXZOZaDpVlW90eA)\",\r\n                vectorEffect: \"non-scaling-stroke\",\r\n                strokeWidth: \"3.316\", //\"4.182\",\r\n                stroke: \"currentColor\",\r\n                strokeLinejoin: \"miter\",\r\n                strokeLinecap: \"square\",\r\n                strokeMiterlimit: \"3\",\r\n              }}\r\n              stroke={stroke}\r\n            />\r\n            <circle\r\n              cx=\"77.5\"\r\n              cy=\"282.5\"\r\n              r=\"2\"\r\n              style={{\r\n                fill: \"currentColor\",\r\n                vectorEffect: \"non-scaling-stroke\",\r\n                strokeWidth: \"1.5\",\r\n                stroke: \"currentColor\",\r\n                strokeLinejoin: \"miter\",\r\n                strokeLinecap: \"round\",\r\n                strokeMiterlimit: \"3\",\r\n              }}\r\n              stroke={stroke}\r\n            />\r\n            <circle\r\n              cx=\"84\"\r\n              cy=\"293\"\r\n              r=\"2\"\r\n              style={{\r\n                fill: \"currentColor\",\r\n                vectorEffect: \"non-scaling-stroke\",\r\n                strokeWidth: \"1.5\",\r\n                stroke: \"currentColor\",\r\n                strokeLinejoin: \"miter\",\r\n                strokeLinecap: \"round\",\r\n                strokeMiterlimit: \"3\",\r\n              }}\r\n              stroke={stroke}\r\n            />\r\n          </svg>\r\n        );\r\n      case \"ResultsIcon\":\r\n        return (\r\n          <svg\r\n            xmlns=\"http://www.w3.org/2000/svg\"\r\n            viewBox=\"0 0 512 512\"\r\n            style={{ verticalAlign: vertAlign }}\r\n            width={width}\r\n            height={height}\r\n          >\r\n            <path\r\n              fill=\"currentColor\"\r\n              d=\"M464 32H48C21.49 32 0 53.49 0 80v352c0 26.51 21.49 48 48 48h416c26.51 0 48-21.49 48-48V80c0-26.51-21.49-48-48-48zM224 416H64v-96h160v96zm0-160H64v-96h160v96zm224 160H288v-96h160v96zm0-160H288v-96h160v96z\"\r\n            ></path>\r\n          </svg>\r\n        );\r\n      case \"HeatmapIcon\":\r\n        return (\r\n          <svg\r\n            version=\"1.1\"\r\n            xmlns=\"http://www.w3.org/2000/svg\"\r\n            x=\"0px\"\r\n            y=\"0px\"\r\n            viewBox=\"0 0 1000 1000\"\r\n            style={{ verticalAlign: vertAlign }}\r\n            width={width}\r\n            height={height}\r\n          >\r\n            <g>\r\n              <g transform=\"translate(0.000000,512.000000) scale(0.100000,-0.100000)\">\r\n                <path\r\n                  fill=\"currentColor\"\r\n                  d=\"M224.5,5006.8c-21.1-9.6-55.5-36.4-76.6-59.4c-38.3-42.1-38.3-72.8-44-4886L100-4782.4l4843.8,3.8l4843.8,5.7l49.8,46c65.1,61.3,78.5,137.9,38.3,222.2c-17.2,36.4-42.1,74.7-53.7,82.4c-11.5,7.7-2114.5,17.2-4675.3,23l-4654.2,9.6l-9.6,4644.6c-9.6,5092.8,0,4707.8-122.6,4750C295.4,5027.9,276.2,5027.9,224.5,5006.8z\"\r\n                />\r\n                <path\r\n                  fill=\"currentColor\"\r\n                  d=\"M3915.3,4393.9c-316-86.2-599.5-319.9-745.1-614.8c-93.8-191.5-120.7-310.3-120.7-522.9c1.9-450.1,245.2-844.7,645.5-1045.8c174.3-86.2,316-118.8,522.9-118.8c208.8,0,360.1,34.5,526.7,120.7c400.3,204.9,641.6,595.7,641.6,1036.2c0,218.3-26.8,335.2-116.8,524.8c-128.3,268.1-388.8,498-687.6,603.3C4420.9,4434.1,4097.3,4441.8,3915.3,4393.9z M4396,4018.5c160.9-42.1,256.7-95.8,371.6-212.6c423.3-423.3,237.5-1128.1-344.8-1300.5c-536.3-159-1086,348.6-971.1,900.2c61.3,296.9,283.5,532.5,574.6,611C4164.3,4053,4262,4053,4396,4018.5z\"\r\n                />\r\n                <path\r\n                  fill=\"currentColor\"\r\n                  d=\"M1724.2,4028.1c-145.6-24.9-295-105.3-409.9-218.3c-363.9-365.8-279.6-978.7,172.4-1235.4c421.4-239.4,978.7-13.4,1122.4,453.9c139.8,450.1-141.7,909.8-612.9,999.8C1883.2,4049.1,1854.4,4049.1,1724.2,4028.1z M2024.9,3608.6c218.3-101.5,291.1-360.1,160.9-570.8c-78.5-126.4-260.5-191.5-423.3-149.4c-340.9,88.1-385,572.7-63.2,720.2C1797,3654.6,1927.2,3654.6,2024.9,3608.6z\"\r\n                />\r\n                <path\r\n                  fill=\"currentColor\"\r\n                  d=\"M6420.5,4026.1c-331.3-67-597.6-365.8-626.3-701c-30.6-363.9,197.3-702.9,544-810.2c293-90,582.2-15.3,792.9,204.9c114.9,120.7,164.7,212.6,201.1,367.7c86.2,369.7-124.5,766.1-478.8,900.2C6732.7,4031.9,6535.4,4051,6420.5,4026.1z M6723.1,3616.3c145.6-61.3,231.8-195.4,233.7-360.1c1.9-379.2-494.2-524.8-710.6-208.8c-38.3,57.5-46,91.9-46,216.4c0,136,3.8,153.2,59.4,222.2C6372.6,3627.8,6564.2,3681.4,6723.1,3616.3z\"\r\n                />\r\n                <path\r\n                  fill=\"currentColor\"\r\n                  d=\"M8780.2,4028.1c-210.7-44-425.2-195.4-528.6-373.5c-203-344.8-101.5-808.3,226-1034.3c480.7-329.4,1126.2-51.7,1220,524.8c55.6,352.4-153.2,716.3-486.5,840.8C9090.5,4031.9,8891.3,4051,8780.2,4028.1z M9079,3616.3c266.2-113,314.1-471.2,90-656.9c-289.2-237.5-708.7,36.4-612.9,402.2C8611.6,3581.8,8866.4,3704.4,9079,3616.3z\"\r\n                />\r\n                <path\r\n                  fill=\"currentColor\"\r\n                  d=\"M6409,1480.7c-469.2-72.8-856.1-419.5-974.9-871.5c-42.1-159-38.3-446.3,5.7-605.2c109.2-390.7,448.2-722.1,838.9-821.7c411.8-105.3,823.6,9.6,1126.2,316c226,229.8,337.1,498,337.1,814c-1.9,444.4-226,825.5-618.7,1038.1C6920.4,1461.5,6627.4,1515.2,6409,1480.7z M6780.6,1068.9C7089,977,7318.8,703.1,7351.3,389c40.2-396.5-254.7-773.8-658.8-844.7c-235.6-42.1-488.4,44.1-670.4,226c-369.7,367.7-283.5,967.2,176.2,1231.5c55.5,30.6,134.1,65.1,176.2,74.7C6493.3,1103.4,6673.3,1099.6,6780.6,1068.9z\"\r\n                />\r\n                <path\r\n                  fill=\"currentColor\"\r\n                  d=\"M1632.2,1061.2c-365.8-116.8-597.6-484.6-538.2-858.1c111.1-716.3,1040-909.8,1432.7-298.8c193.4,304.5,149.4,702.9-109.2,963.4C2208.8,1074.7,1908,1149.4,1632.2,1061.2z M2067,645.6c195.4-113,243.2-394.6,97.7-572.7c-182-220.3-530.5-180-649.3,76.6C1354.5,496.2,1733.8,837.2,2067,645.6z\"\r\n                />\r\n                <path\r\n                  fill=\"currentColor\"\r\n                  d=\"M8707.4,1068.9c-134.1-42.1-231.8-101.5-333.3-201.1c-314.1-316-306.5-814,21.1-1120.4c306.4-287.3,781.5-279.6,1080.2,19.2c419.5,421.4,237.5,1131.9-333.3,1300.5C9019.6,1103.4,8818.5,1103.4,8707.4,1068.9z M9038.7,685.8c245.2-72.8,352.4-379.2,204.9-588C9056-170.3,8636.5-99.4,8556.1,212.8c-57.5,218.4,68.9,432.9,285.4,482.7C8929.6,716.5,8933.4,716.5,9038.7,685.8z\"\r\n                />\r\n                <path\r\n                  fill=\"currentColor\"\r\n                  d=\"M3955.5-1478.4c-306.4-67-634-321.8-775.7-605.2c-95.8-187.7-130.2-335.2-130.2-540.1c0-519.1,316-950,823.6-1126.2c172.4-59.4,507.6-61.3,685.7-1.9c352.4,114.9,649.3,402.2,773.8,750.8c49.8,134.1,67,453.9,36.4,616.7c-13.4,67-59.4,193.4-103.4,283.5C5028.1-1622.1,4484.1-1363.5,3955.5-1478.4z M4430.5-1873c111.1-26.8,249-113,348.6-214.5c101.5-105.3,160.9-206.9,197.3-348.6c93.8-350.5-91.9-733.6-432.9-898.3c-114.9-55.5-139.8-59.4-325.6-59.4c-189.6,0-210.7,3.8-327.5,61.3c-490.3,241.3-605.2,863.8-229.8,1248.8C3861.7-1876.8,4143.2-1800.2,4430.5-1873z\"\r\n                />\r\n                <path\r\n                  fill=\"currentColor\"\r\n                  d=\"M8795.5-1654.7c-197.3-23-409.9-132.2-566.9-289.2c-295-295-362-756.6-164.7-1143.4c59.4-118.8,272-333.3,386.9-392.6c247.1-126.4,522.9-155.1,766.1-78.5c589.9,185.8,860,871.5,559.3,1415.4c-109.2,197.3-346.7,386.9-574.6,455.9C9103.9-1658.5,8897-1641.2,8795.5-1654.7z M9169-2099c214.5-101.5,321.8-264.3,331.3-503.7c7.7-124.5,0-162.8-38.3-249c-65.1-143.6-151.3-233.7-279.6-296.9c-145.6-70.9-348.6-74.7-492.2-9.6c-379.2,174.3-463.5,668.4-160.9,957.7C8697.8-2037.7,8956.4-1997.5,9169-2099z\"\r\n                />\r\n                <path\r\n                  fill=\"currentColor\"\r\n                  d=\"M1795-1846.2c-555.4-65.1-873.4-639.7-626.3-1131.9c185.8-371.6,647.4-530.5,1024.7-352.4c302.6,139.8,475,442.5,448.2,777.6c-26.8,312.2-266.2,605.3-559.3,678C1980.8-1850,1865.9-1838.5,1795-1846.2z M2011.5-2263.7c346.7-145.6,308.4-639.7-59.4-739.3c-304.5-82.4-574.6,258.6-434.8,547.8C1607.3-2271.4,1823.8-2187.1,2011.5-2263.7z\"\r\n                />\r\n                <path\r\n                  fill=\"currentColor\"\r\n                  d=\"M6439.7-1853.9c-360.1-59.4-649.3-400.3-651.2-764.2c0-105.3,44.1-281.6,95.8-383.1c59.4-116.8,222.2-266.2,362-333.3c116.8-55.5,141.7-59.4,327.5-59.4c185.8,0,210.7,3.8,327.5,59.4c226,107.3,394.6,327.5,440.5,572.7C7437.5-2236.9,6970.2-1765.7,6439.7-1853.9z M6790.2-2304c116.8-80.4,170.5-197.3,162.8-344.7c-13.4-214.5-166.6-360.1-381.1-362c-415.6,0-532.5,574.6-151.3,747C6525.9-2217.8,6690.6-2235,6790.2-2304z\"\r\n                />\r\n              </g>\r\n            </g>\r\n          </svg>\r\n        );\r\n      case \"ResetZoomIcon\":\r\n        return (\r\n          <svg\r\n            className=\"MuiSvgIcon-root MuiSvgIcon-fontSizeMedium css-i4bv87-MuiSvgIcon-root\"\r\n            focusable=\"false\"\r\n            aria-hidden=\"true\"\r\n            viewBox=\"0 0 24 24\"\r\n            data-testid=\"ZoomInIcon\"\r\n          >\r\n            <rect\r\n              x=\"8\"\r\n              y=\"8\"\r\n              width=\"3\"\r\n              height=\"3\"\r\n              style={{\r\n                fill: \"none\",\r\n                strokeWidth: 1,\r\n                stroke: \"currentColor\",\r\n              }}\r\n            />\r\n            <path d=\"M15.5 14h-.79l-.28-.27C15.41 12.59 16 11.11 16 9.5 16 5.91 13.09 3 9.5 3S3 5.91 3 9.5 5.91 16 9.5 16c1.61 0 3.09-.59 4.23-1.57l.27.28v.79l5 4.99L20.49 19l-4.99-5zm-6 0C7.01 14 5 11.99 5 9.5S7.01 5 9.5 5 14 7.01 14 9.5 11.99 14 9.5 14z\"></path>\r\n          </svg>\r\n        );\r\n    }\r\n  }\r\n}\r\n\r\nCustomSvgIcon.propTypes = {\r\n  name: PropTypes.string,\r\n  width: PropTypes.string,\r\n  height: PropTypes.string,\r\n  stroke: PropTypes.string,\r\n  vertAlign: PropTypes.string,\r\n};\r\n\r\nexport default CustomSvgIcon;\r\n","import React from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport TableRow from \"@mui/material/TableRow\";\r\nimport TableCell from \"@mui/material/TableCell\";\r\nimport Checkbox from \"@mui/material/Checkbox\";\r\nimport Tooltip from \"@mui/material/Tooltip\";\r\nimport Button from \"@mui/material/Button\";\r\nimport IconButton from \"@mui/material/IconButton\";\r\nimport EditIcon from \"@mui/icons-material/Edit\";\r\nimport PlayArrowIcon from \"@mui/icons-material/PlayArrow\";\r\nimport TimerIcon from \"@mui/icons-material/Timer\";\r\nimport LinearProgress from \"@mui/material/LinearProgress\";\r\nimport FileCopyIcon from \"@mui/icons-material/FileCopy\";\r\nimport StopIcon from \"@mui/icons-material/Stop\";\r\n\r\nimport Backend from \"../../common/utils/Backend\";\r\nimport CustomSvgIcon from \"../../globalComponents/CustomSvgIcon\";\r\nimport { convertDate } from \"../../common/utils/Localization\";\r\n\r\nconst ProjectsTableRow = (props) => {\r\n  const {\r\n    classes,\r\n    projectTypes,\r\n    isSelected,\r\n    project,\r\n    handleClick,\r\n    handleSelectOneClick,\r\n    onEditProject,\r\n    history,\r\n    handleActiveTabChange,\r\n    user,\r\n  } = props;\r\n\r\n  /**\r\n   * Returns Label of a project type\r\n   * @param {String} type Project type string\r\n   */\r\n  const labelFromProjectType = () => {\r\n    if (!projectTypes) return project.type;\r\n    let resultObject = projectTypes.find((c) => c.name === project.type);\r\n    return resultObject ? resultObject.label : project.type;\r\n  };\r\n\r\n  const handleContextmenu = (e) => {\r\n    e.preventDefault();\r\n    handleSelectOneClick(e, project);\r\n  };\r\n\r\n  const onCancelRowClick = (e) => {\r\n    e.stopPropagation();\r\n    Backend.cancelJob(project.id);\r\n  };\r\n\r\n  // Sets job state for project to pending, so that it can be run, when no other job is running\r\n  const onRunRowClick = (e) => {\r\n    e.stopPropagation();\r\n    Backend.setProjectsPending([project.id], () => {\r\n      console.log(\"project state changed to pending:\", project.id);\r\n    });\r\n  };\r\n\r\n  const onDuplicateSingleClick = (e) => {\r\n    e.stopPropagation();\r\n    Backend.duplicateProjects([project.id], () => {\r\n      handleActiveTabChange(0);\r\n    });\r\n  };\r\n\r\n  const onProjectStateClick = (e, id) => {\r\n    e.stopPropagation();\r\n    Backend.loadProjectMessage(id)\r\n      .then((jsonResponse) => {\r\n        if (jsonResponse.message) {\r\n          console.log(jsonResponse.message);\r\n        }\r\n      })\r\n      .catch((error) => {\r\n        console.log(\"Error:\", error);\r\n      });\r\n  };\r\n\r\n  const onProjectErrorStateClick = (e, id) => {\r\n    e.stopPropagation();\r\n    Backend.loadProjectMessage(id)\r\n      .then((jsonResponse) => {\r\n        if (jsonResponse.message) {\r\n          window.openErrorDialog(jsonResponse.message);\r\n        }\r\n      })\r\n      .catch((error) => {\r\n        console.log(\"Error:\", error);\r\n      });\r\n  };\r\n\r\n  /**\r\n   * Set job state for project to timed\r\n   * @param {MouseEvent} e\r\n   */\r\n  const onSetTimedClick = (e) => {\r\n    e.stopPropagation();\r\n    Backend.setProjectsTimed([project.id], () => {\r\n      console.log(\"project state changed to timed:\", project.id);\r\n    });\r\n  };\r\n\r\n  //Updates label style according to project state\r\n  const labelFromState = () => {\r\n    switch (project.state) {\r\n      case \"creating\":\r\n        return (\r\n          <Tooltip disableInteractive title={`Importing: ${project.progress}%`}>\r\n            <div\r\n              className={classes.progressBarContainer}\r\n              onClick={(e) => onProjectStateClick(e, project.id)}\r\n            >\r\n              <LinearProgress\r\n                style={{\r\n                  height: 20,\r\n                  width: \"100%\",\r\n                }}\r\n                classes={{ bar: classes.creatingJobBar }}\r\n                variant=\"determinate\"\r\n                value={project.progress}\r\n              />\r\n              <div className={classes.progressBar}>{project.progress}%</div>\r\n            </div>\r\n          </Tooltip>\r\n        );\r\n      case \"running\":\r\n        return (\r\n          <Tooltip\r\n            disableInteractive\r\n            title={`Running job: ${project.progress.toFixed(2, 10)}%`}\r\n          >\r\n            <div\r\n              className={classes.progressBarContainer}\r\n              onClick={(e) => onProjectStateClick(e, project.id)}\r\n            >\r\n              <LinearProgress\r\n                style={{\r\n                  height: 20,\r\n                  width: \"100%\",\r\n                }}\r\n                variant=\"determinate\"\r\n                value={project.progress}\r\n              />\r\n              <div className={classes.progressBar}>{project.progress}%</div>\r\n            </div>\r\n          </Tooltip>\r\n        );\r\n      case \"success\":\r\n        return (\r\n          <span\r\n            style={{ color: \"rgb(71, 214, 71)\" }}\r\n            onClick={(e) => onProjectStateClick(e, project.id)}\r\n          >\r\n            Finished\r\n          </span>\r\n        );\r\n      case \"error\":\r\n        return (\r\n          <Button\r\n            style={{ color: \"#ff0000\" }}\r\n            onClick={(e) => onProjectErrorStateClick(e, project.id)}\r\n          >\r\n            {project.state}\r\n          </Button>\r\n        );\r\n      default:\r\n        return (\r\n          <span onClick={(e) => onProjectStateClick(e, project.id)}>\r\n            {project.state}\r\n          </span>\r\n        );\r\n    }\r\n  };\r\n\r\n  return (\r\n    <TableRow\r\n      className={classes.tableRow}\r\n      style={{\r\n        opacity: project.canOpen ? \"1\" : \"0.5\",\r\n      }}\r\n      hover\r\n      onClick={(event) => handleClick(event, project)}\r\n      role=\"checkbox\"\r\n      aria-checked={isSelected}\r\n      tabIndex={-1}\r\n      key={project.id}\r\n      selected={isSelected}\r\n      onContextMenu={handleContextmenu}\r\n    >\r\n      <TableCell padding=\"checkbox\">\r\n        <Tooltip\r\n          disableInteractive\r\n          title={project.canOpen ? \"\" : \"No Permission!\"}\r\n        >\r\n          <span>\r\n            <Checkbox\r\n              name=\"CheckboxProjectRow\"\r\n              disabled={!project.canOpen}\r\n              checked={isSelected}\r\n              onClick={(event) => handleSelectOneClick(event, project)}\r\n            />\r\n          </span>\r\n        </Tooltip>\r\n      </TableCell>\r\n      <TableCell align=\"right\">{project.readableId}</TableCell>\r\n      <TableCell style={{ padding: \"0\" }}>\r\n        <Tooltip\r\n          disableInteractive\r\n          title={\r\n            <React.Fragment>\r\n              {project.previewImageFiles\r\n                .slice(0, Math.min(5, project.previewImageFiles.length))\r\n                .map((file) => {\r\n                  return (\r\n                    <div style={{ display: \"inline-block\" }} key={file.id}>\r\n                      <div style={{ display: \"inline-block\" }}>\r\n                        {\r\n                          <img\r\n                            style={{\r\n                              display: \"block\",\r\n                              background: \"black\",\r\n                              margin: \"5px\",\r\n                              objectFit: \"contain\",\r\n                            }}\r\n                            width=\"200\"\r\n                            height=\"200\"\r\n                            src={Backend.renderThumbnail(file.id)}\r\n                            alt=\"\"\r\n                          />\r\n                        }\r\n                        <div\r\n                          style={{\r\n                            width: \"100%\",\r\n                            textAlign: \"center\",\r\n                          }}\r\n                        >\r\n                          {file.fileName}\r\n                        </div>\r\n                      </div>\r\n                    </div>\r\n                  );\r\n                })}\r\n            </React.Fragment>\r\n          }\r\n        >\r\n          {\r\n            <img\r\n              style={{\r\n                background: \"black\",\r\n                margin: \"2px\",\r\n                objectFit: \"contain\",\r\n              }}\r\n              onError={(event) => (event.target.style.display = \"none\")}\r\n              width=\"60\"\r\n              height=\"60\"\r\n              src={Backend.renderThumbnail(\r\n                project.previewImageFiles.length > 0\r\n                  ? project.previewImageFiles[0].id\r\n                  : 0\r\n              )}\r\n              alt=\"\"\r\n            />\r\n          }\r\n        </Tooltip>\r\n      </TableCell>\r\n      <TableCell component=\"th\" scope=\"row\" padding=\"none\">\r\n        <div\r\n          style={{\r\n            display: \"inline-block\",\r\n            width: \"calc(100% - 48px)\",\r\n          }}\r\n        >\r\n          {project.name}\r\n        </div>\r\n\r\n        {!project.type.includes(\"HistoPointCounting\") &&\r\n          !project.type.includes(\"HistoClassification\") && (\r\n            <Tooltip\r\n              disableInteractive\r\n              title={project.canEdit ? \"\" : \"No Permission!\"}\r\n            >\r\n              <span>\r\n                <IconButton\r\n                  disabled={!project.canEdit}\r\n                  aria-label=\"Edit Project Name\"\r\n                  onClick={(e) => {\r\n                    onEditProject(project);\r\n                    e.stopPropagation();\r\n                  }}\r\n                  size=\"large\"\r\n                >\r\n                  <EditIcon />\r\n                </IconButton>\r\n              </span>\r\n            </Tooltip>\r\n          )}\r\n      </TableCell>\r\n      <TableCell align=\"right\">{project.ownerName}</TableCell>\r\n      <TableCell align=\"right\">{labelFromProjectType()}</TableCell>\r\n      <TableCell align=\"right\">{labelFromState()}</TableCell>\r\n      <TableCell align=\"right\">\r\n        {convertDate(project.creationDateTime).toLocaleString()}\r\n      </TableCell>\r\n      <TableCell align=\"right\">\r\n        {project.state === \"success\" && project.type !== \"ProteomeAnalysis\" ? (\r\n          <Tooltip\r\n            disableInteractive\r\n            title={project.canAccessResults ? \"Result\" : \"No Permission\"}\r\n          >\r\n            <span>\r\n              <IconButton\r\n                disabled={!project.canAccessResults}\r\n                aria-label=\"Result\"\r\n                onClick={(e) => {\r\n                  e.stopPropagation();\r\n                  history.push(\"/report/\" + project.id);\r\n                }}\r\n                size=\"large\"\r\n              >\r\n                <CustomSvgIcon\r\n                  name=\"ResultsIcon\"\r\n                  width=\"22.86\"\r\n                  height=\"23.8\"\r\n                  vertAlign=\"-4px\"\r\n                />\r\n              </IconButton>\r\n            </span>\r\n          </Tooltip>\r\n        ) : (\r\n          \"\"\r\n        )}\r\n        {project.state === \"success\" && (\r\n          <Tooltip disableInteractive title=\"Duplicate project\">\r\n            <span>\r\n              <IconButton\r\n                aria-label=\"Duplicate Project\"\r\n                onClick={onDuplicateSingleClick}\r\n                size=\"large\"\r\n              >\r\n                <FileCopyIcon />\r\n              </IconButton>\r\n            </span>\r\n          </Tooltip>\r\n        )}\r\n\r\n        {!project.type.includes(\"HistoPointCounting\") &&\r\n          !project.type.includes(\"HistoClassification\") && (\r\n            <span>\r\n              {project.state === \"running\" ||\r\n              project.state === \"timed\" ||\r\n              project.state === \"pending\" ? (\r\n                <Tooltip disableInteractive title=\"Cancel job\">\r\n                  <span>\r\n                    <IconButton\r\n                      aria-label=\"Stop\"\r\n                      onClick={onCancelRowClick}\r\n                      size=\"large\"\r\n                    >\r\n                      <StopIcon />\r\n                    </IconButton>\r\n                  </span>\r\n                </Tooltip>\r\n              ) : (\r\n                <span>\r\n                  {!project.canRun ||\r\n                  project.state === \"running\" ||\r\n                  project.state === \"pending\" ? (\r\n                    <Tooltip\r\n                      disableInteractive\r\n                      title={\r\n                        project.canRun && user.group.canRunJob\r\n                          ? \"\"\r\n                          : \"No Permission\"\r\n                      }\r\n                    >\r\n                      <span>\r\n                        <IconButton\r\n                          disabled={true}\r\n                          aria-label=\"Timer\"\r\n                          onClick={onSetTimedClick}\r\n                          size=\"large\"\r\n                        >\r\n                          <TimerIcon />\r\n                        </IconButton>\r\n                      </span>\r\n                    </Tooltip>\r\n                  ) : (\r\n                    <Tooltip\r\n                      disableInteractive\r\n                      title=\"Run project within time \"\r\n                    >\r\n                      <span>\r\n                        <IconButton\r\n                          aria-label=\"Timer\"\r\n                          disabled={user.group.canRunJob === false}\r\n                          hidden={\r\n                            project.state === \"success\" &&\r\n                            project.type.includes(\"SonyQD\")\r\n                              ? true\r\n                              : false\r\n                          }\r\n                          onClick={(e) => onSetTimedClick(e, project.id)}\r\n                          size=\"large\"\r\n                        >\r\n                          <TimerIcon />\r\n                        </IconButton>\r\n                      </span>\r\n                    </Tooltip>\r\n                  )}\r\n                  <Tooltip\r\n                    disableInteractive\r\n                    title={\r\n                      project.canRun && user.group.canRunJob\r\n                        ? project.state === \"success\"\r\n                          ? \"Run job (including manual adjustments)\"\r\n                          : \"Run job\"\r\n                        : \"No Permission!\"\r\n                    }\r\n                  >\r\n                    <span>\r\n                      <IconButton\r\n                        aria-label=\"Play\"\r\n                        disabled={\r\n                          !project.canRun ||\r\n                          project.state === \"running\" ||\r\n                          project.state === \"pending\" ||\r\n                          user.group.canRunJob === false\r\n                        }\r\n                        hidden={\r\n                          project.state === \"success\" &&\r\n                          project.type.includes(\"SonyQD\")\r\n                            ? true\r\n                            : false\r\n                        }\r\n                        onClick={onRunRowClick}\r\n                        size=\"large\"\r\n                      >\r\n                        <PlayArrowIcon />\r\n                      </IconButton>\r\n                    </span>\r\n                  </Tooltip>\r\n                </span>\r\n              )}\r\n            </span>\r\n          )}\r\n      </TableCell>\r\n    </TableRow>\r\n  );\r\n};\r\n\r\nProjectsTableRow.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  user: PropTypes.object,\r\n  projectTypes: PropTypes.array.isRequired,\r\n  isSelected: PropTypes.bool.isRequired,\r\n  project: PropTypes.object.isRequired,\r\n  handleClick: PropTypes.func.isRequired,\r\n  handleSelectOneClick: PropTypes.func.isRequired,\r\n  onEditProject: PropTypes.func.isRequired,\r\n  history: PropTypes.object.isRequired,\r\n  handleActiveTabChange: PropTypes.func.isRequired,\r\n};\r\n\r\nexport default ProjectsTableRow;\r\n","// Copyright HS-Analysis GmbH, 2019\r\n\r\n// Framework imports\r\nimport React, { useRef } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport { withRouter } from \"react-router-dom\";\r\n\r\n// External imports\r\nimport classNames from \"classnames\";\r\n\r\n// Material UI imports\r\nimport { lighten, darken } from \"@mui/material/styles\";\r\nimport Checkbox from \"@mui/material/Checkbox\";\r\nimport CloudDownload from \"@mui/icons-material/CloudDownload\";\r\nimport CloudUpload from \"@mui/icons-material/CloudUpload\";\r\nimport DeleteIcon from \"@mui/icons-material/Delete\";\r\nimport FileCopy from \"@mui/icons-material/FileCopy\";\r\nimport IconButton from \"@mui/material/IconButton\";\r\nimport Paper from \"@mui/material/Paper\";\r\nimport PlayArrowIcon from \"@mui/icons-material/PlayArrow\";\r\nimport SearchIcon from \"@mui/icons-material/Search\";\r\nimport Merge from \"@mui/icons-material/MergeType\";\r\nimport Tab from \"@mui/material/Tab\";\r\nimport Table from \"@mui/material/Table\";\r\nimport TableBody from \"@mui/material/TableBody\";\r\nimport TableContainer from \"@mui/material/TableContainer\";\r\nimport TableCell from \"@mui/material/TableCell\";\r\nimport TableHead from \"@mui/material/TableHead\";\r\nimport TableRow from \"@mui/material/TableRow\";\r\nimport TableSortLabel from \"@mui/material/TableSortLabel\";\r\nimport Tabs from \"@mui/material/Tabs\";\r\nimport TextField from \"@mui/material/TextField\";\r\nimport TimerIcon from \"@mui/icons-material/Timer\";\r\nimport Toolbar from \"@mui/material/Toolbar\";\r\nimport Tooltip from \"@mui/material/Tooltip\";\r\nimport Typography from \"@mui/material/Typography\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n\r\n// HSA imports\r\nimport \"./../../css/tooltip.css\";\r\nimport { authenticationService } from \"../../common/services\";\r\nimport { viewerType } from \"../../common/utils/Utils\";\r\nimport { withSpinloader } from \"../../common/components/Spinloader\";\r\nimport Backend from \"../../common/utils/Backend\";\r\nimport FindFilesDialog, { ProjectActionMode } from \"../dialogs/FindFilesDialog\";\r\nimport ProjectsTableRow from \"./ProjectsTableRow\";\r\n\r\nfunction desc(a, b, orderBy) {\r\n  if (b[orderBy] < a[orderBy]) {\r\n    return -1;\r\n  }\r\n  if (b[orderBy] > a[orderBy]) {\r\n    return 1;\r\n  }\r\n  return 0;\r\n}\r\n\r\nfunction stableSort(array, cmp) {\r\n  const stabilizedThis = array.map((el, index) => [el, index]);\r\n  stabilizedThis.sort((a, b) => {\r\n    const order = cmp(a[0], b[0]);\r\n    if (order !== 0) return order;\r\n    return a[1] - b[1];\r\n  });\r\n  return stabilizedThis.map((el) => el[0]);\r\n}\r\n\r\nfunction getSorting(order, orderBy) {\r\n  return order === \"desc\"\r\n    ? (a, b) => desc(a, b, orderBy)\r\n    : (a, b) => -desc(a, b, orderBy);\r\n}\r\n\r\nconst rows = [\r\n  { id: \"readableId\", numeric: false, disablePadding: false, label: \"ID\" },\r\n  { id: \"thumbnail\", numeric: false, disablePadding: true, label: \"Preview\" },\r\n  { id: \"name\", numeric: false, disablePadding: true, label: \"Name\" },\r\n  { id: \"creator\", numeric: false, disablePadding: false, label: \"Creator\" },\r\n  { id: \"type\", numeric: true, disablePadding: false, label: \"Method\" },\r\n  { id: \"state\", numeric: true, disablePadding: false, label: \"State\" },\r\n  {\r\n    id: \"creationDateTime\",\r\n    numeric: true,\r\n    disablePadding: false,\r\n    label: \"Created\",\r\n  },\r\n  { id: \"actions\", numeric: false, disablePadding: false, label: \"Actions\" },\r\n];\r\n\r\nclass EnhancedTableHead extends React.Component {\r\n  createSortHandler = (property) => (event) => {\r\n    this.props.onRequestSort(event, property);\r\n  };\r\n\r\n  render() {\r\n    const { onSelectAllClick, order, orderBy, numSelected } = this.props;\r\n\r\n    return (\r\n      <TableHead>\r\n        <TableRow>\r\n          <TableCell padding=\"checkbox\">\r\n            <Checkbox\r\n              name=\"CheckboxAllProjects\"\r\n              checked={numSelected > 0}\r\n              onChange={onSelectAllClick}\r\n            />\r\n          </TableCell>\r\n          {rows.map(\r\n            (row) => (\r\n              <TableCell\r\n                key={row.id}\r\n                align={row.numeric ? \"right\" : \"left\"}\r\n                padding={row.disablePadding ? \"none\" : \"normal\"}\r\n                sortDirection={orderBy === row.id ? order : false}\r\n              >\r\n                <Tooltip\r\n                  disableInteractive\r\n                  title=\"Sort\"\r\n                  placement={row.numeric ? \"bottom-end\" : \"bottom-start\"}\r\n                  enterDelay={300}\r\n                >\r\n                  <TableSortLabel\r\n                    active={orderBy === row.id}\r\n                    direction={order}\r\n                    onClick={this.createSortHandler(row.id)}\r\n                  >\r\n                    {row.label}\r\n                  </TableSortLabel>\r\n                </Tooltip>\r\n              </TableCell>\r\n            ),\r\n            this\r\n          )}\r\n        </TableRow>\r\n      </TableHead>\r\n    );\r\n  }\r\n}\r\n\r\nEnhancedTableHead.propTypes = {\r\n  numSelected: PropTypes.number.isRequired,\r\n  onRequestSort: PropTypes.func.isRequired,\r\n  onSelectAllClick: PropTypes.func.isRequired,\r\n  order: PropTypes.string.isRequired,\r\n  orderBy: PropTypes.string.isRequired,\r\n  rowCount: PropTypes.number.isRequired,\r\n};\r\n\r\nconst toolbarStyles = (theme) => ({\r\n  root: {\r\n    paddingRight: theme.spacing(1),\r\n    display: \"grid\",\r\n    gridTemplateColumns: \"auto auto 1fr auto auto auto\",\r\n  },\r\n  searchIcon: {\r\n    fill: \"lightgray\",\r\n    marginTop: 8,\r\n    marginLeft: 20,\r\n  },\r\n  searchField: {\r\n    marginLeft: 6,\r\n    marginTop: 0,\r\n    maxWidth: 300,\r\n  },\r\n  highlight:\r\n    theme.palette.mode === \"light\"\r\n      ? {\r\n          color: theme.palette.secondary.main,\r\n          backgroundColor: lighten(theme.palette.secondary.light, 0.85),\r\n        }\r\n      : {\r\n          color: theme.palette.text.primary,\r\n          backgroundColor: theme.palette.secondary.dark,\r\n        },\r\n  spacer: {\r\n    flex: \"1 1 100%\",\r\n  },\r\n  actions: {\r\n    color: theme.palette.text.secondary,\r\n  },\r\n  title: {\r\n    flex: \"0 0 auto\",\r\n  },\r\n});\r\n\r\nlet EnhancedTableToolbar = (props) => {\r\n  const {\r\n    numSelected,\r\n    classes,\r\n    onDeleteClick,\r\n    onRunSelectedClick,\r\n    onTimedRunSelectedClick,\r\n    onDuplicateSelectedClick,\r\n    onMergeSelectedClick,\r\n    onImportClick,\r\n    onExportClick,\r\n    searchText,\r\n    onChangeFilter,\r\n    user,\r\n  } = props;\r\n  const canOpenProject = true; //TODO: Fix user.group.canOpenProject\r\n\r\n  const fileUploader = useRef(null);\r\n\r\n  const onChangeFile = (event) => {\r\n    props.spinloader.show();\r\n    event.stopPropagation();\r\n    event.preventDefault();\r\n    onImportClick(event.target.files);\r\n    event.target.value = \"\";\r\n  };\r\n\r\n  return (\r\n    <Toolbar\r\n      className={classNames(classes.root, {\r\n        [classes.highlight]: numSelected > 0,\r\n      })}\r\n    >\r\n      <div className={classes.title}>\r\n        {numSelected > 0 ? (\r\n          <Typography color=\"inherit\" variant=\"subtitle1\">\r\n            {numSelected} selected\r\n          </Typography>\r\n        ) : (\r\n          <Typography variant=\"subtitle1\">Projects</Typography>\r\n        )}\r\n      </div>\r\n      <SearchIcon className={classes.searchIcon} />\r\n      <TextField\r\n        fullWidth\r\n        variant=\"standard\"\r\n        name=\"Textfield\"\r\n        className={classes.searchField}\r\n        key={\"searchText\"}\r\n        margin=\"normal\"\r\n        label={\"Search Projects\"}\r\n        value={searchText}\r\n        onChange={onChangeFilter}\r\n      />\r\n\r\n      <div className={classes.spacer} />\r\n      <div className={classes.actions}>\r\n        {numSelected > 0 ? (\r\n          <div style={{ width: \"max-content\" }}>\r\n            <Tooltip\r\n              disableInteractive\r\n              title={canOpenProject ? \"Export projects\" : \"No Permission!\"}\r\n            >\r\n              <span>\r\n                <IconButton\r\n                  disabled={canOpenProject !== true}\r\n                  aria-label=\"Export\"\r\n                  onClick={onExportClick}\r\n                  size=\"large\"\r\n                >\r\n                  <CloudDownload />\r\n                </IconButton>\r\n              </span>\r\n            </Tooltip>\r\n            <Tooltip\r\n              disableInteractive\r\n              title={\r\n                user.group.canRunJob\r\n                  ? \"Run selected projects within time\"\r\n                  : \"No Permission!\"\r\n              }\r\n            >\r\n              <span>\r\n                <IconButton\r\n                  aria-label=\"Timer\"\r\n                  disabled={!user.group.canRunJob}\r\n                  onClick={onTimedRunSelectedClick}\r\n                  size=\"large\"\r\n                >\r\n                  <TimerIcon />\r\n                </IconButton>\r\n              </span>\r\n            </Tooltip>\r\n\r\n            <Tooltip disableInteractive title=\"Merge\">\r\n              <>\r\n                <IconButton\r\n                  aria-label=\"Merge\"\r\n                  onClick={onMergeSelectedClick}\r\n                  size=\"large\"\r\n                  disabled={numSelected < 2}\r\n                >\r\n                  <Merge />\r\n                </IconButton>\r\n              </>\r\n            </Tooltip>\r\n\r\n            <Tooltip disableInteractive title=\"Duplicate\">\r\n              <IconButton\r\n                aria-label=\"Duplicate\"\r\n                onClick={onDuplicateSelectedClick}\r\n                size=\"large\"\r\n              >\r\n                <FileCopy />\r\n              </IconButton>\r\n            </Tooltip>\r\n\r\n            <Tooltip\r\n              disableInteractive\r\n              title={\r\n                user.group.canRunJob\r\n                  ? \"Run selected projects now\"\r\n                  : \"user.group.canRunJob\"\r\n              }\r\n            >\r\n              <span>\r\n                <IconButton\r\n                  disabled={!user.group.canRunJob}\r\n                  aria-label=\"Play\"\r\n                  onClick={onRunSelectedClick}\r\n                  size=\"large\"\r\n                >\r\n                  <PlayArrowIcon />\r\n                </IconButton>\r\n              </span>\r\n            </Tooltip>\r\n            <Tooltip disableInteractive title=\"Delete selected projects\">\r\n              <IconButton\r\n                aria-label=\"Delete\"\r\n                onClick={onDeleteClick}\r\n                size=\"large\"\r\n              >\r\n                <DeleteIcon />\r\n              </IconButton>\r\n            </Tooltip>\r\n          </div>\r\n        ) : (\r\n          <Tooltip\r\n            disableInteractive\r\n            title={\r\n              user.group === null || user.group?.canImportProjects !== true\r\n                ? \"No Permission\"\r\n                : \"Import existing project\"\r\n            }\r\n          >\r\n            <span>\r\n              <IconButton\r\n                disabled={\r\n                  user.group === null || user.group?.canImportProjects !== true\r\n                }\r\n                aria-label=\"Import\"\r\n                onClick={() => fileUploader.current.click()}\r\n                size=\"large\"\r\n              >\r\n                <CloudUpload />\r\n              </IconButton>\r\n            </span>\r\n          </Tooltip>\r\n        )}\r\n        <input\r\n          type=\"file\"\r\n          accept=\".hsa\"\r\n          ref={fileUploader}\r\n          onChange={onChangeFile}\r\n          style={{ display: \"none\" }}\r\n        />\r\n      </div>\r\n    </Toolbar>\r\n  );\r\n};\r\n\r\nEnhancedTableToolbar.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  numSelected: PropTypes.number.isRequired,\r\n  onDeleteClick: PropTypes.func,\r\n  onImportClick: PropTypes.func,\r\n  onExportClick: PropTypes.func,\r\n  onRunSelectedClick: PropTypes.func,\r\n  onTimedRunSelectedClick: PropTypes.func,\r\n  searchText: PropTypes.string,\r\n  onChangeFilter: PropTypes.func,\r\n  onDuplicateSelectedClick: PropTypes.func,\r\n  onMergeSelectedClick: PropTypes.func,\r\n  spinloader: PropTypes.object,\r\n  user: PropTypes.object,\r\n};\r\n\r\nEnhancedTableToolbar = withStyles(toolbarStyles)(EnhancedTableToolbar);\r\n\r\nconst styles = () => ({\r\n  root: {\r\n    width: \"100%\",\r\n    height: \"100%\",\r\n    display: \"grid\",\r\n    gridTemplateRows: \"auto auto 1fr\",\r\n  },\r\n  table: {\r\n    minWidth: 1020,\r\n  },\r\n  tableRow: {\r\n    cursor: \"pointer\",\r\n  },\r\n  tableWrapper: {\r\n    overflowX: \"auto\",\r\n    height: \"100%\",\r\n  },\r\n  creatingJobBar: {\r\n    backgroundColor: darken(\"#216DC0\", 0.3),\r\n  },\r\n  input: {\r\n    width: \"calc(100% - 48px)\",\r\n  },\r\n  progressBarContainer: {\r\n    position: \"relative\",\r\n  },\r\n  progressBar: {\r\n    position: \"absolute\",\r\n    left: 0,\r\n    top: 0,\r\n    width: \"100%\",\r\n    lineHeight: \"20px\",\r\n    textAlign: \"center\",\r\n  },\r\n});\r\n\r\nclass ProjectsTable extends React.Component {\r\n  constructor(props) {\r\n    super(props);\r\n\r\n    this._isMounted = false;\r\n    this.state = {\r\n      order: \"desc\",\r\n      orderBy: \"changeDateTime\",\r\n      selected: [],\r\n      page: 0,\r\n      searchText: \"\",\r\n      topScrollPos: 0,\r\n      bottomScrollPos: 0,\r\n    };\r\n    this.tableContainerRef = React.createRef();\r\n  }\r\n\r\n  componentDidMount = () => {\r\n    this._isMounted = true;\r\n    const tableContainerEl = this.tableContainerRef.current;\r\n    tableContainerEl.addEventListener(\"scroll\", this.handleScroll);\r\n    this.handleScroll();\r\n    Backend.loadAvailableProjectTypes((e) => {\r\n      this.setState({\r\n        projectTypes: e,\r\n        projectTypesNames: e.map((projectType) => projectType.name),\r\n      });\r\n    });\r\n  };\r\n\r\n  componentWillUnmount = () => {\r\n    const tableContainerEl = this.tableContainerRef.current;\r\n    tableContainerEl.removeEventListener(\"scroll\", this.handleScroll);\r\n    this._isMounted = false;\r\n  };\r\n\r\n  handleScroll = () => {\r\n    const scrollTop = this.tableContainerRef.current.scrollTop;\r\n    // const scrollHeight = this.tableContainerRef.current.scrollHeight;\r\n    const clientHeight = this.tableContainerRef.current.clientHeight;\r\n\r\n    this.setState({\r\n      topScrollPos: scrollTop,\r\n      bottomScrollPos: scrollTop + clientHeight,\r\n    });\r\n  };\r\n\r\n  setMountedState = (stateObject, callback) => {\r\n    if (this._isMounted) {\r\n      this.setState(stateObject, callback);\r\n    }\r\n  };\r\n\r\n  onChangeFilter = (e) => {\r\n    let searchText = e.target.value;\r\n    this.setState({ searchText });\r\n  };\r\n\r\n  handleRequestSort = (event, property) => {\r\n    const orderBy = property;\r\n    let order = \"desc\";\r\n\r\n    if (this.state.orderBy === property && this.state.order === \"desc\") {\r\n      order = \"asc\";\r\n    }\r\n\r\n    this.setState({ order, orderBy });\r\n  };\r\n\r\n  handleSelectAllClick = (event) => {\r\n    if (event.target.checked) {\r\n      this.setState(() => ({\r\n        selected: this.props.projects\r\n          .filter((project) => {\r\n            return this.isJobVisible(project);\r\n          })\r\n          .map((project) => project.id),\r\n      }));\r\n    } else {\r\n      this.setState({ selected: [] });\r\n    }\r\n  };\r\n\r\n  handleSelectOneClick = (e, project) => {\r\n    let selectedObject = this.state.selected;\r\n    let selectedIndex = selectedObject.indexOf(project.id);\r\n    if (selectedIndex !== -1) selectedObject.splice(selectedIndex, 1);\r\n    else selectedObject.push(project.id);\r\n    this.setState(() => ({\r\n      selected: selectedObject,\r\n    }));\r\n    e.stopPropagation();\r\n  };\r\n\r\n  handleClick = (event, project) => {\r\n    if (!project.canOpen) {\r\n      window.showWarningSnackbar(\"Opening this project forbidden by owner!\");\r\n    } else if (this.props.serverIsRunning) {\r\n      if (\r\n        project.state === \"error\" ||\r\n        project.state === \"success\" ||\r\n        project.state === \"ready\" ||\r\n        project.state === \"pending\" ||\r\n        project.state === \"timed\" ||\r\n        project.state === \"running\"\r\n      ) {\r\n        this.props.history.push(viewerType(project.type) + project.id);\r\n      }\r\n    } else {\r\n      window.showWarningSnackbar(\"Local API Server not ready!\");\r\n    }\r\n  };\r\n\r\n  handleContextmenu = (event, project) => {\r\n    if (!this.isSelected(project.id)) {\r\n      const { selected } = this.state;\r\n      selected.push(project.id);\r\n      this.setState({ selected });\r\n    }\r\n    event.preventDefault();\r\n    return false;\r\n  };\r\n\r\n  isSelected = (id) => this.state.selected.indexOf(id) !== -1;\r\n\r\n  onRunSelectedClick = () => {\r\n    let projects = this.props.projects;\r\n    let projectIds = [];\r\n    for (let project of projects) {\r\n      for (let id of this.state.selected) {\r\n        if (id === project.id && project.canRun) {\r\n          projectIds.push(id);\r\n        }\r\n      }\r\n    }\r\n    Backend.setProjectsPending(projectIds, () => {\r\n      this.setState({ selected: [] });\r\n    });\r\n  };\r\n\r\n  onTimedRunSelectedClick = () => {\r\n    let projects = this.props.projects;\r\n    let projectIds = [];\r\n    for (let project of projects) {\r\n      for (let id of this.state.selected) {\r\n        if (id === project.id && project.canRun) {\r\n          projectIds.push(id);\r\n        }\r\n      }\r\n    }\r\n    Backend.setProjectsTimed(projectIds, () => {\r\n      console.log(\"projects state changed to timed:\", projectIds);\r\n      this.setState({ selected: [] });\r\n    });\r\n  };\r\n\r\n  /**\r\n   * Import / Export Projects\r\n   */\r\n  onImportClick = (files) => {\r\n    Backend.importProjects(files[0], (res) => {\r\n      if (res.status === 403) {\r\n        window.showErrorSnackbar(\"No Permission to import projects!\");\r\n      } else {\r\n        this.ImportProjectsDialog.show(res);\r\n        this.setState({ selected: [] });\r\n      }\r\n      this.props.spinloader.hide();\r\n    });\r\n  };\r\n\r\n  onExportClick = () => {\r\n    this.props.spinloader.show();\r\n    let exportName = \"\";\r\n    let numSelected = 0;\r\n    for (let project of this.props.projects) {\r\n      if (this.state.selected.includes(project.id)) {\r\n        if (numSelected === 0) {\r\n          exportName += project.name;\r\n        }\r\n        numSelected++;\r\n      }\r\n    }\r\n    if (numSelected > 1) {\r\n      exportName += \"+\" + (numSelected - 1);\r\n    }\r\n\r\n    Backend.exportProjects(this.state.selected, exportName, () => {\r\n      this.props.spinloader.hide();\r\n      this.setState({ selected: [] });\r\n    });\r\n  };\r\n\r\n  /**\r\n   * Delete selected projects\r\n   */\r\n  onDeleteClick = () => {\r\n    window.openResponseDialog(\r\n      \"Do you really want to delete this project?\",\r\n      (response) => {\r\n        if (response) {\r\n          Backend.deleteProjects(this.state.selected, () => {\r\n            this.setState({ selected: [] });\r\n          });\r\n          // get projectnames for selected projectIDs\r\n          let projects = this.props.projects.filter((project) =>\r\n            this.state.selected.includes(project.id)\r\n          );\r\n          let projectNames = [];\r\n          projects.forEach(function (element) {\r\n            projectNames.push(element.name);\r\n          });\r\n          Backend.deleteGalleryExport(projectNames, () => {\r\n            this.setState({ selected: [] });\r\n          });\r\n        }\r\n      }\r\n    );\r\n  };\r\n\r\n  onDuplicateSelectedClick = () => {\r\n    Backend.duplicateProjects(this.state.selected, () => {\r\n      this.setState({ selected: [] });\r\n      this.props.handleActiveTabChange(0);\r\n    });\r\n  };\r\n\r\n  onMergeSelectedClick = () => {\r\n    let projectType = null;\r\n    let projectTypesEqual = true;\r\n    for (const selectedProjectId of this.state.selected) {\r\n      const selectedProject = this.props.projects.find(\r\n        (project) => project.id === selectedProjectId\r\n      );\r\n      if (projectType === null) {\r\n        projectType = selectedProject.type;\r\n      } else {\r\n        if (projectType !== selectedProject.type) {\r\n          projectTypesEqual = false;\r\n          break;\r\n        }\r\n      }\r\n    }\r\n    if (projectTypesEqual) {\r\n      Backend.mergeProjects(this.state.selected, (result) => {\r\n        if (!result.success) {\r\n          window.showErrorSnackbar(\"Merge failed!\");\r\n        }\r\n        this.setState({ selected: [] });\r\n        this.props.handleActiveTabChange(0);\r\n      });\r\n    } else {\r\n      window.showErrorSnackbar(\"Merge not possible. Types are not equal!\");\r\n    }\r\n  };\r\n\r\n  handleChange = (event, value) => {\r\n    if (value !== this.props.activeTab) {\r\n      if (value === 1) {\r\n        window.document.title = `Finished - HSA Kit ${window.version}`;\r\n      } else {\r\n        window.document.title = `Projects - HSA Kit ${window.version}`;\r\n      }\r\n      this.props.handleActiveTabChange(value);\r\n      if (this.state.selected.length > 0) {\r\n        this.setState({\r\n          selected: [],\r\n        });\r\n      }\r\n    }\r\n  };\r\n\r\n  countFinished(countOther) {\r\n    let result = this.props.projects.length;\r\n    if (this.props.projects.length > 0) {\r\n      result = this.props.projects.reduce(\r\n        (acc, cur) => acc + (cur.state === \"success\" ? 1 : 0),\r\n        0\r\n      );\r\n    }\r\n    if (countOther) {\r\n      result = this.props.projects.length - result;\r\n    }\r\n    return result;\r\n  }\r\n\r\n  isInView = (idx) => {\r\n    const { topScrollPos, bottomScrollPos } = this.state;\r\n    const headerSpace = 60;\r\n    const rowHeight = 81; //including bottom border\r\n\r\n    const idxTop = rowHeight * idx + headerSpace;\r\n    const idxBottom = idxTop + rowHeight;\r\n\r\n    return idxBottom >= topScrollPos && idxTop <= bottomScrollPos;\r\n  };\r\n\r\n  isJobVisible = (row) => {\r\n    const { activeTab } = this.props;\r\n    const { searchText } = this.state;\r\n    let showJob = false;\r\n    //filter if pending or finished\r\n    if (searchText !== \"\") {\r\n      if (!row.name.toLowerCase().includes(searchText.toLowerCase())) {\r\n        return false;\r\n      }\r\n    }\r\n    if (activeTab === 1) {\r\n      showJob = row.state === \"success\";\r\n    } else {\r\n      showJob = row.state !== \"success\";\r\n    }\r\n    if (this.state.projectTypesNames) {\r\n      //filter if job project module exists (release version)\r\n      if (showJob) {\r\n        return this.state.projectTypesNames.includes(row.type);\r\n      } else {\r\n        return false;\r\n      }\r\n    }\r\n    return false;\r\n  };\r\n\r\n  render() {\r\n    const { classes, projects, activeTab, spinloader, user } = this.props;\r\n    const { order, orderBy, selected, searchText } = this.state;\r\n\r\n    if (typeof this.props.user.group === \"undefined\") {\r\n      authenticationService.logout();\r\n    }\r\n\r\n    const sortedProjects = stableSort(\r\n      projects,\r\n      getSorting(order, orderBy)\r\n    ).filter((row) => {\r\n      return this.isJobVisible(row);\r\n    });\r\n\r\n    return (\r\n      <Paper className={classes.root}>\r\n        <FindFilesDialog\r\n          ref={(c) => (this.ImportProjectsDialog = c)}\r\n          projectActionMode={ProjectActionMode.Import}\r\n        />\r\n        <FindFilesDialog\r\n          ref={(c) => (this.FindMissingFiles = c)}\r\n          projectActionMode={ProjectActionMode.Update}\r\n        />\r\n        <Tabs\r\n          variant=\"fullWidth\"\r\n          indicatorColor=\"primary\"\r\n          textColor=\"primary\"\r\n          value={activeTab}\r\n          onChange={this.handleChange}\r\n        >\r\n          <Tab key=\"0\" label={\"Pending (\" + this.countFinished(true) + \")\"} />\r\n          <Tab key=\"1\" label={\"Finished (\" + this.countFinished(false) + \")\"} />\r\n        </Tabs>\r\n        <EnhancedTableToolbar\r\n          numSelected={selected.length}\r\n          onDeleteClick={this.onDeleteClick}\r\n          onRunSelectedClick={this.onRunSelectedClick}\r\n          onTimedRunSelectedClick={this.onTimedRunSelectedClick}\r\n          onDuplicateSelectedClick={this.onDuplicateSelectedClick}\r\n          onMergeSelectedClick={this.onMergeSelectedClick}\r\n          onImportClick={this.onImportClick}\r\n          onExportClick={this.onExportClick}\r\n          onChangeFilter={this.onChangeFilter}\r\n          searchText={searchText}\r\n          spinloader={spinloader}\r\n          user={user}\r\n        />\r\n\r\n        <TableContainer\r\n          className={classes.tableWrapper}\r\n          ref={this.tableContainerRef}\r\n        >\r\n          <Table\r\n            stickyHeader\r\n            className={classes.table}\r\n            style={{ tableLayout: \"fixed\" }}\r\n          >\r\n            <colgroup>\r\n              <col width=\"50px\" />\r\n              <col width=\"50px\" />\r\n              <col width=\"70px\" />\r\n              <col />\r\n              <col width=\"70px\" />\r\n              <col width=\"180px\" />\r\n              <col width=\"100px\" />\r\n              <col width=\"180px\" />\r\n              <col width=\"130px\" />\r\n            </colgroup>\r\n            <EnhancedTableHead\r\n              numSelected={selected.length}\r\n              order={order}\r\n              orderBy={orderBy}\r\n              onSelectAllClick={this.handleSelectAllClick}\r\n              onRequestSort={this.handleRequestSort}\r\n              rowCount={projects.length}\r\n              activeTab={this.props.activeTab}\r\n              spinloader={this.props.spinloader}\r\n            />\r\n            <TableBody>\r\n              {sortedProjects.map((project, idx) => {\r\n                const isSelected = this.isSelected(project.id);\r\n                if (this.isInView(idx)) {\r\n                  return (\r\n                    <ProjectsTableRow\r\n                      key={project.id}\r\n                      classes={classes}\r\n                      user={user}\r\n                      projectTypes={this.state.projectTypes}\r\n                      isSelected={isSelected}\r\n                      project={project}\r\n                      onRunRowClick={this.onRunRowClick}\r\n                      handleClick={this.handleClick}\r\n                      handleSelectOneClick={this.handleSelectOneClick}\r\n                      onEditProject={this.props.onEditProject}\r\n                      history={this.props.history}\r\n                      handleActiveTabChange={this.props.handleActiveTabChange}\r\n                    />\r\n                  );\r\n                } else {\r\n                  return <tr key={project.id} style={{ height: 81 }}></tr>;\r\n                }\r\n              })}\r\n            </TableBody>\r\n          </Table>\r\n        </TableContainer>\r\n      </Paper>\r\n    );\r\n  }\r\n}\r\n\r\nProjectsTable.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  projects: PropTypes.array,\r\n  activeTab: PropTypes.number,\r\n  handleActiveTabChange: PropTypes.func,\r\n  onEditProject: PropTypes.func,\r\n  spinloader: PropTypes.object,\r\n  serverIsRunning: PropTypes.bool,\r\n  history: PropTypes.object,\r\n  user: PropTypes.object,\r\n};\r\n\r\nexport default withRouter(withSpinloader(withStyles(styles)(ProjectsTable)));\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport { withRouter } from \"react-router-dom\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\nimport { Fab, Tooltip } from \"@mui/material\";\r\nimport CircularProgress from \"@mui/material/CircularProgress\";\r\nimport Backend from \"../common/utils/Backend\";\r\nimport AddIcon from \"@mui/icons-material/Add\";\r\n\r\nimport CreateProjectDialog from \"./dialogs/CreateProjectDialog\";\r\nimport ProjectsTable from \"./components/ProjectsTable\";\r\n\r\nimport { authenticationService } from \"../common/services\";\r\n\r\n/**\r\n * Adds leading zeros to a number\r\n * @param {Number} num Number\r\n * @param {Number} size length that the number should have\r\n * @returns {String} String of number with zero padding\r\n */\r\nfunction pad(num, size) {\r\n  var s = num + \"\";\r\n  while (s.length < size) s = \"0\" + s;\r\n  return s;\r\n}\r\n\r\n/**\r\n * Generates a default name for new Projects like \"Project 001\"\r\n * @param {Object[]} data List of Projects\r\n * @returns {String} Smart Default name for a new project\r\n */\r\nfunction incrementDefaultName(data) {\r\n  let newDefaultName = \"Project 001\";\r\n  let maxProjNum = 0;\r\n  for (let proj of data) {\r\n    if (proj.name.match(\"Project [0-9][0-9][0-9]\")) {\r\n      const projNum = parseInt(proj.name.replace(\"Project \", \"\"), 10);\r\n      let newMaxProjNum = Math.max(maxProjNum, projNum);\r\n      if (newMaxProjNum) maxProjNum = newMaxProjNum;\r\n    }\r\n  }\r\n  newDefaultName = `Project ${pad(maxProjNum + 1, 3)}`;\r\n  return newDefaultName;\r\n}\r\n\r\nconst styles = (theme) => ({\r\n  root: { height: \"100%\", overflow: \"hidden\" },\r\n  fab: {\r\n    position: \"absolute\",\r\n    bottom: theme.spacing(2),\r\n    right: theme.spacing(2),\r\n  },\r\n});\r\n\r\nclass HomePage extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n    this._isMounted = false;\r\n    this.state = {\r\n      editableProject: null,\r\n      projects: [],\r\n      open: false,\r\n      newDefaultName: \"Project 001\",\r\n      activeTab: 0,\r\n      serverIsRunning: false,\r\n      user: { group: {} },\r\n    };\r\n\r\n    Backend.getCurrentUser((user) => {\r\n      if (user.fullName === null) {\r\n        authenticationService.logout();\r\n        window.location.reload(true); //clear cache\r\n      } else {\r\n        this.setState({ user });\r\n      }\r\n    });\r\n    this.checkPythonServer();\r\n  }\r\n  checkPythonServer = () => {\r\n    Backend.isLocalServerReady((result) => {\r\n      if (this.state.serverIsRunning !== result) {\r\n        this.setMountedState({ serverIsRunning: result });\r\n      }\r\n      if (!result) {\r\n        setTimeout(this.checkPythonServer, 2000);\r\n      }\r\n    });\r\n  };\r\n\r\n  setMountedState = (stateObject, callback) => {\r\n    if (this._isMounted) {\r\n      this.setState(stateObject, callback);\r\n    }\r\n  };\r\n\r\n  handleClickOpen = () => {\r\n    Backend.getLicensingInfo((license) => {\r\n      if (license.licenseStatus === \"VALID\") {\r\n        this.setMountedState({\r\n          editableProject: null,\r\n          open: true,\r\n        });\r\n      } else {\r\n        authenticationService.logout();\r\n        this.props.history.push(\"/licensing\");\r\n      }\r\n    });\r\n  };\r\n\r\n  handleEditOpen = (project) => {\r\n    this.setMountedState({\r\n      editableProject: project,\r\n      open: true,\r\n    });\r\n  };\r\n\r\n  handleClose = () => {\r\n    this.setMountedState({\r\n      editableProject: null,\r\n      open: false,\r\n    });\r\n    this.refreshProjects();\r\n  };\r\n\r\n  componentDidMount() {\r\n    this._isMounted = true;\r\n    this.refreshProjectsInterval();\r\n  }\r\n\r\n  componentWillUnmount() {\r\n    this._isMounted = false;\r\n    clearInterval(this.refreshInterval);\r\n  }\r\n\r\n  refreshProjectsInterval() {\r\n    this.refreshProjects(() => {\r\n      setTimeout(() => this.refreshProjectsInterval(), 1000);\r\n    });\r\n  }\r\n\r\n  refreshProjects(callback) {\r\n    if (!this._isMounted) return;\r\n    Backend.listProjects(\r\n      (data) => {\r\n        let projectsChanged =\r\n          JSON.stringify(this.state.projects) !== JSON.stringify(data);\r\n        if (projectsChanged) {\r\n          this.setMountedState({\r\n            projects: data,\r\n            newDefaultName: incrementDefaultName(data),\r\n          });\r\n        }\r\n        callback();\r\n      },\r\n      (error) => {\r\n        if (this._isMounted && callback) {\r\n          console.error(\r\n            \"Error loading projects, reloading page might help. Error: \" + error\r\n          );\r\n          callback();\r\n        }\r\n      }\r\n    );\r\n  }\r\n  handleActiveTabChange = (activeTabIndex) => {\r\n    if (this.state.activeTab !== activeTabIndex) {\r\n      this.setMountedState({ activeTab: activeTabIndex });\r\n    }\r\n  };\r\n\r\n  render() {\r\n    const { classes } = this.props;\r\n    const { serverIsRunning } = this.state;\r\n    return (\r\n      <div className={classes.root}>\r\n        <ProjectsTable\r\n          onEditProject={this.handleEditOpen}\r\n          projects={this.state.projects}\r\n          activeTab={this.state.activeTab}\r\n          handleActiveTabChange={this.handleActiveTabChange}\r\n          serverIsRunning={serverIsRunning}\r\n          user={this.state.user}\r\n        />\r\n        <Tooltip\r\n          disableInteractive\r\n          title={\r\n            serverIsRunning ? \"Add new project\" : \"Local API Server not ready!\"\r\n          }\r\n        >\r\n          <Fab\r\n            className={classes.fab}\r\n            color=\"primary\"\r\n            onClick={() => {\r\n              if (serverIsRunning) {\r\n                this.handleClickOpen();\r\n              } else {\r\n                window.showWarningSnackbar(\"Local API Server not ready!\");\r\n              }\r\n            }}\r\n          >\r\n            {serverIsRunning ? (\r\n              <AddIcon />\r\n            ) : (\r\n              <CircularProgress\r\n                className={classes.serverSpinLoader}\r\n                color=\"inherit\"\r\n              />\r\n            )}\r\n          </Fab>\r\n        </Tooltip>\r\n        <CreateProjectDialog\r\n          project={this.state.editableProject}\r\n          open={this.state.open}\r\n          onClose={this.handleClose}\r\n          newdefaultname={this.state.newDefaultName}\r\n          handleActiveTabChange={this.handleActiveTabChange}\r\n        />\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nHomePage.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  history: PropTypes.object,\r\n};\r\n\r\nexport default withRouter(withStyles(styles)(HomePage));\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport Backend from \"../common/utils/Backend\";\r\n\r\nimport {\r\n  Select,\r\n  InputLabel,\r\n  FormHelperText,\r\n  FormControl,\r\n  Typography,\r\n  MenuItem,\r\n  OutlinedInput,\r\n  InputAdornment,\r\n  IconButton,\r\n  Tooltip,\r\n  Button,\r\n} from \"@mui/material\";\r\nimport ContentCopyIcon from \"@mui/icons-material/ContentCopy\";\r\nimport ContentPasteIcon from \"@mui/icons-material/ContentPaste\";\r\nimport FileUploadIcon from \"@mui/icons-material/FileUpload\";\r\nimport { Folder } from \"@mui/icons-material\";\r\n\r\nimport withStyles from \"@mui/styles/withStyles\";\r\nimport { ValidatorForm, TextValidator } from \"react-material-ui-form-validator\";\r\n\r\nimport CssBaseline from \"@mui/material/CssBaseline\";\r\nimport Paper from \"@mui/material/Paper\";\r\n\r\nimport FolderChooser from \"../admin/components/FolderChooser\";\r\n\r\nconst styles = (theme) => ({\r\n  root: {\r\n    width: \"auto\",\r\n    display: \"block\", // Fix IE 11 issue.\r\n    marginLeft: theme.spacing(3),\r\n    marginRight: theme.spacing(3),\r\n    [theme.breakpoints.up(600 + 3 * 2 * 8)]: {\r\n      // [theme.breakpoints.up(500 + theme.spacing(3 * 2))]: {\r\n      // In the mui v5 update, theme.spacing returns \"48px\" instead of 48.\r\n      // Therefore, hardcoding the default theme.spacing multiplyer of 8.\r\n      width: \"100%\",\r\n      height: \"100%\",\r\n      margin: 0,\r\n      overflow: \"auto\",\r\n    },\r\n  },\r\n  licensStatusContainer: {\r\n    position: \"relative\",\r\n  },\r\n  licensingInputArea: {\r\n    \"& textarea\": {\r\n      overflow: \"auto !important\",\r\n      minHeight: 50,\r\n      maxHeight: \"184px\",\r\n    },\r\n  },\r\n  textAreaButton: {\r\n    display: \"block\",\r\n  },\r\n  paper: {\r\n    maxWidth: 600,\r\n    margin: \"20px auto\",\r\n    display: \"flex\",\r\n    flexDirection: \"column\",\r\n    alignItems: \"center\",\r\n    padding: `${theme.spacing(2)} ${theme.spacing(3)} ${theme.spacing(3)}`,\r\n  },\r\n  formControl: {\r\n    marginTop: theme.spacing(1),\r\n  },\r\n  form: {\r\n    width: \"100%\", // Fix IE 11 issue.\r\n    marginTop: theme.spacing(1),\r\n  },\r\n  submit: {\r\n    marginTop: theme.spacing(3),\r\n    width: \"100%\",\r\n  },\r\n});\r\n\r\nclass LicensingPage extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n    this.selectedFolderPath = \"storagePath\";\r\n    this.state = {\r\n      licenseStatus: \"\",\r\n      validationMsg: \"\",\r\n      hardwareID: \"\",\r\n      os: \"Windows\",\r\n      expirationDate: \"\",\r\n      isSubmitting: false,\r\n      showStoragePathChooser: false,\r\n      folderPath: \"\",\r\n      showFolderChooser: false,\r\n      validationObject: {\r\n        storagePath: true,\r\n        tempPath: true,\r\n        galleryOutputPath: true,\r\n        javaPath: true,\r\n      },\r\n      formData: {\r\n        storagePath: \"\",\r\n        tempPath: \"\",\r\n        galleryOutputPath: \"\",\r\n        javaPath: \"\",\r\n        localhost: false,\r\n        licenseKey: \"\",\r\n      },\r\n    };\r\n\r\n    Backend.getLicensingInfo((result) => this.setState(result));\r\n    Backend.readAppSettingsLicensing((result) => {\r\n      const formData = result;\r\n      this.setState({ formData });\r\n    });\r\n  }\r\n\r\n  handleChange = (event) => {\r\n    const { name, value } = event.target;\r\n    this.setState((prevState) => ({\r\n      formData: {\r\n        ...prevState.formData,\r\n        [name]: value,\r\n      },\r\n    }));\r\n  };\r\n\r\n  correctPath(path) {\r\n    path = path.replace(/\\\\/g, \"/\");\r\n    while (path.includes(\"//\")) {\r\n      path = path.replace(\"//\", \"/\");\r\n    }\r\n    if (!path.endsWith(\"/\")) {\r\n      path = path + \"/\";\r\n    }\r\n    return path;\r\n  }\r\n\r\n  handleSubmit = () => {\r\n    this.setState({\r\n      isSubmitting: true,\r\n    });\r\n\r\n    const { formData } = this.state;\r\n\r\n    let storagePath = formData.storagePath;\r\n    let tempPath = formData.tempPath;\r\n    let galleryOutputPath = formData.galleryOutputPath;\r\n    let javaPath = formData.javaPath;\r\n\r\n    storagePath = this.correctPath(storagePath);\r\n    tempPath = this.correctPath(tempPath);\r\n    galleryOutputPath = this.correctPath(galleryOutputPath);\r\n\r\n    formData[\"storagePath\"] = storagePath;\r\n    formData[\"tempPath\"] = tempPath;\r\n    formData[\"galleryOutputPath\"] = galleryOutputPath;\r\n    formData[\"javaPath\"] = javaPath;\r\n\r\n    this.setState({ formData });\r\n\r\n    Backend.writeAppSettingsLicensing(this.state.formData, (data) => {\r\n      let allValid = true;\r\n      let dialogString = \"\";\r\n      let validationObject = this.state.validationObject;\r\n      for (const [key, value] of Object.entries(data)) {\r\n        if (!value) {\r\n          allValid = false;\r\n          validationObject[key] = false;\r\n\r\n          if (key === \"javaPath\") {\r\n            dialogString += \"File not found: \";\r\n          } else {\r\n            dialogString += \"Folder not found: \";\r\n          }\r\n          dialogString += formData[key] + \"\\n\";\r\n        }\r\n      }\r\n      if (allValid) {\r\n        window.location.reload();\r\n      } else {\r\n        window.openWarningDialog(dialogString);\r\n        this.setState({ isSubmitting: false, validationObject });\r\n      }\r\n    });\r\n  };\r\n\r\n  removeErrorStyle = (key) => {\r\n    let validationObject = this.state.validationObject;\r\n    if (validationObject[key] !== \"none\") {\r\n      validationObject[key] = true;\r\n      this.setState({ validationObject });\r\n    }\r\n  };\r\n\r\n  handleCopyLink = () => {\r\n    navigator.clipboard.writeText(this.state.hardwareID);\r\n    window.showSuccessSnackbar(\"Hardware Id copyied to clipboard!\");\r\n  };\r\n\r\n  pasteLicenseKeyFromClipboard = () => {\r\n    navigator.clipboard\r\n      .readText()\r\n      .then((text) => {\r\n        let formData = this.state.formData;\r\n        formData.licenseKey = text;\r\n        this.setState({ formData });\r\n        window.showSuccessSnackbar(\r\n          \"License Key replaced with clipboard content!\"\r\n        );\r\n      })\r\n      .catch((err) => {\r\n        window.openErrorDialog(\"Failed to read clipboard contents: \" + err);\r\n      });\r\n  };\r\n\r\n  readLicenseKeyFromFile = () => {\r\n    const fileInput = document.createElement(\"input\");\r\n    fileInput.type = \"file\";\r\n    fileInput.accept = \".txt\";\r\n\r\n    fileInput.onchange = () => {\r\n      const file = fileInput.files[0];\r\n      if (file && file.size <= 1048576) {\r\n        const fileReader = new FileReader();\r\n\r\n        fileReader.onload = (event) => {\r\n          const fileContents = event.target.result;\r\n          let formData = this.state.formData;\r\n          formData.licenseKey = fileContents;\r\n          this.setState({ formData });\r\n          window.showSuccessSnackbar(\"License Key replaced with file content!\");\r\n        };\r\n\r\n        fileReader.readAsText(file);\r\n      } else if (file && file.size > 1048576) {\r\n        window.showErrorSnackbar(\r\n          \"Selected file is too big to contain a License Key!\"\r\n        );\r\n      }\r\n    };\r\n\r\n    fileInput.click();\r\n  };\r\n\r\n  handleAccept = (key, path) => {\r\n    this.setState((prevState) => ({\r\n      formData: {\r\n        ...prevState.formData,\r\n        [key]: path,\r\n      },\r\n    }));\r\n  };\r\n\r\n  render() {\r\n    const { classes } = this.props;\r\n    const { isSubmitting, error, formData } = this.state;\r\n\r\n    return (\r\n      <main className={classes.root}>\r\n        <CssBaseline />\r\n        <Paper className={classes.paper}>\r\n          {this.state.licenseStatus === \"INVALID\" && (\r\n            <h1>Invalid License Key!</h1>\r\n          )}\r\n          {this.state.licenseStatus === \"CRACKED\" && (\r\n            <h1>Cracked License Key!</h1>\r\n          )}\r\n          {this.state.licenseStatus === \"VALID\" && <h1>Valid License Key</h1>}\r\n          <div className={classes.statusBlock}>\r\n            <strong>License State: </strong>\r\n            {this.state.licenseStatus}\r\n            <br />\r\n            {this.state.validationMsg !== \"\" && (\r\n              <React.Fragment>\r\n                <strong>Validation Message: </strong>\r\n                {this.state.validationMsg}\r\n                <br />\r\n              </React.Fragment>\r\n            )}\r\n            {this.state.expirationDate !== \"\" && (\r\n              <React.Fragment>\r\n                <strong>Expiration Date: </strong>\r\n                {this.state.expirationDate}\r\n                <br />\r\n              </React.Fragment>\r\n            )}\r\n\r\n            <FormControl\r\n              fullWidth\r\n              sx={{ m: 1, margin: \"10px 0 0 0\" }}\r\n              variant=\"outlined\"\r\n            >\r\n              <InputLabel>Hardware Id</InputLabel>\r\n              <OutlinedInput\r\n                fullWidth\r\n                type=\"text\"\r\n                value={this.state.hardwareID}\r\n                endAdornment={\r\n                  <InputAdornment position=\"end\">\r\n                    <IconButton\r\n                      aria-label=\"copy link to clipboard\"\r\n                      onClick={this.handleCopyLink}\r\n                      edge=\"end\"\r\n                    >\r\n                      <ContentCopyIcon />\r\n                    </IconButton>\r\n                  </InputAdornment>\r\n                }\r\n                label=\"Stream link\"\r\n              />\r\n            </FormControl>\r\n          </div>\r\n          <br />\r\n\r\n          {this.state.licenseStatus === \"VALID\" && (\r\n            <Button color=\"primary\" variant=\"contained\" href=\"/login\">\r\n              Sign In\r\n            </Button>\r\n          )}\r\n          <ValidatorForm className={classes.form} onSubmit={this.handleSubmit}>\r\n            {error && (\r\n              <Typography\r\n                align=\"center\"\r\n                variant=\"caption\"\r\n                style={{ color: \"#ff0000\" }}\r\n              >\r\n                {error}\r\n              </Typography>\r\n            )}\r\n\r\n            <FolderChooser\r\n              title=\"Choose Directory\"\r\n              open={this.state.showFolderChooser}\r\n              isRelative={false}\r\n              storagePath={this.state.folderPath}\r\n              onClose={(path) => {\r\n                if (path) {\r\n                  this.handleAccept(this.selectedFolderPath, path);\r\n                } \r\n                this.setState({ showFolderChooser: false, folderPath: \"\" });\r\n              }}\r\n            />\r\n            <TextValidator\r\n              className={classes.inputField}\r\n              style={{\r\n                border: this.state.validationObject.storagePath\r\n                  ? \"none\"\r\n                  : \"5px solid red\",\r\n              }}\r\n              onClick={() => this.removeErrorStyle(\"storagePath\")}\r\n              fullWidth\r\n              margin=\"normal\"\r\n              name=\"storagePath\"\r\n              label=\"Storage Path\"\r\n              type=\"text\"\r\n              validators={[\"required\"]}\r\n              errorMessages={[\"this field is required\"]}\r\n              onChange={this.handleChange}\r\n              value={formData.storagePath}\r\n              InputLabelProps={{\r\n                shrink: true,\r\n              }}\r\n              InputProps={{\r\n                endAdornment: (\r\n                  <InputAdornment position=\"end\">\r\n                    <IconButton\r\n                      className={classes.inputButton}\r\n                      onClick={() => {\r\n                        this.selectedFolderPath = \"storagePath\";\r\n                        this.setState({\r\n                          showFolderChooser: true,\r\n                          folderPath: \"\",\r\n                        });\r\n                      }}\r\n                    >\r\n                      <Folder />\r\n                    </IconButton>\r\n                  </InputAdornment>\r\n                ),\r\n              }}\r\n            />\r\n            <TextValidator\r\n              style={{\r\n                border: this.state.validationObject.tempPath\r\n                  ? \"none\"\r\n                  : \"5px solid red\",\r\n              }}\r\n              onClick={() => this.removeErrorStyle(\"tempPath\")}\r\n              fullWidth\r\n              margin=\"normal\"\r\n              name=\"tempPath\"\r\n              label=\"Data Path\"\r\n              type=\"text\"\r\n              validators={[\"required\"]}\r\n              errorMessages={[\"this field is required\"]}\r\n              onChange={this.handleChange}\r\n              value={formData.tempPath}\r\n              InputLabelProps={{\r\n                shrink: true,\r\n              }}\r\n              InputProps={{\r\n                endAdornment: (\r\n                  <InputAdornment position=\"end\">\r\n                    <IconButton\r\n                      className={classes.inputButton}\r\n                      onClick={() => {\r\n                        this.selectedFolderPath = \"tempPath\";\r\n                        this.setState({ showFolderChooser: true });\r\n                      }}\r\n                    >\r\n                      <Folder />\r\n                    </IconButton>\r\n                  </InputAdornment>\r\n                ),\r\n              }}\r\n            />\r\n            <TextValidator\r\n              style={{\r\n                border: this.state.validationObject.galleryOutputPath\r\n                  ? \"none\"\r\n                  : \"5px solid red\",\r\n              }}\r\n              onClick={() => this.removeErrorStyle(\"galleryOutputPath\")}\r\n              fullWidth\r\n              margin=\"normal\"\r\n              name=\"galleryOutputPath\"\r\n              label=\"Gallery Output Path\"\r\n              type=\"text\"\r\n              validators={[\"required\"]}\r\n              errorMessages={[\"this field is required\"]}\r\n              onChange={this.handleChange}\r\n              value={formData.galleryOutputPath}\r\n              InputLabelProps={{\r\n                shrink: true,\r\n              }}\r\n              InputProps={{\r\n                endAdornment: (\r\n                  <InputAdornment position=\"end\">\r\n                    <IconButton\r\n                      className={classes.inputButton}\r\n                      onClick={() => {\r\n                        this.selectedFolderPath = \"galleryOutputPath\";\r\n                        this.setState({ showFolderChooser: true });\r\n                      }}\r\n                    >\r\n                      <Folder />\r\n                    </IconButton>\r\n                  </InputAdornment>\r\n                ),\r\n              }}\r\n            />\r\n\r\n            <TextValidator\r\n              style={{\r\n                border: this.state.validationObject.javaPath\r\n                  ? \"none\"\r\n                  : \"5px solid red\",\r\n              }}\r\n              onClick={() => this.removeErrorStyle(\"javaPath\")}\r\n              fullWidth\r\n              margin=\"normal\"\r\n              name=\"javaPath\"\r\n              label=\"Java Path\"\r\n              type=\"text\"\r\n              validators={[\"required\"]}\r\n              errorMessages={[\"this field is required\"]}\r\n              onChange={this.handleChange}\r\n              value={formData.javaPath}\r\n              InputLabelProps={{\r\n                shrink: true,\r\n              }}\r\n              InputProps={{\r\n                endAdornment: (\r\n                  <InputAdornment position=\"end\">\r\n                    <IconButton\r\n                      className={classes.inputButton}\r\n                      onClick={() => {\r\n                        this.selectedFolderPath = \"javaPath\";\r\n                        this.setState({ showFolderChooser: true });\r\n                      }}\r\n                    >\r\n                      <Folder />\r\n                    </IconButton>\r\n                  </InputAdornment>\r\n                ),\r\n              }}\r\n            />\r\n\r\n            <FormControl fullWidth margin=\"normal\">\r\n              <InputLabel>Localhost?</InputLabel>\r\n              <Select\r\n                name=\"SelectLocalhost\"\r\n                label=\"Localhost?\"\r\n                value={formData.localhost}\r\n                onChange={this.handleChange}\r\n                inputProps={{\r\n                  name: \"localhost\",\r\n                  id: \"localhost-native-helper\",\r\n                }}\r\n              >\r\n                <MenuItem value={false}>False</MenuItem>\r\n                <MenuItem value={true}>True</MenuItem>\r\n              </Select>\r\n              <FormHelperText>Set True to use remotely</FormHelperText>\r\n            </FormControl>\r\n            <div className={classes.licensStatusContainer}>\r\n              <TextValidator\r\n                className={classes.licensingInputArea}\r\n                style={{\r\n                  border:\r\n                    this.state.licenseStatus === \"VALID\"\r\n                      ? \"none\"\r\n                      : \"5px solid red\",\r\n                }}\r\n                fullWidth\r\n                margin=\"normal\"\r\n                name=\"licenseKey\"\r\n                label=\"License Key\"\r\n                type=\"text\"\r\n                validators={[\"required\"]}\r\n                errorMessages={[\"this field is required\"]}\r\n                onChange={this.handleChange}\r\n                value={formData.licenseKey}\r\n                variant=\"outlined\"\r\n                multiline\r\n                InputProps={{\r\n                  endAdornment: (\r\n                    <InputAdornment position=\"end\">\r\n                      <div>\r\n                        <Tooltip title=\"Paste content from clipboard\">\r\n                          <IconButton\r\n                            className={classes.textAreaButton}\r\n                            onClick={this.pasteLicenseKeyFromClipboard}\r\n                          >\r\n                            <ContentPasteIcon />\r\n                          </IconButton>\r\n                        </Tooltip>\r\n                        <Tooltip title=\"Import License key from File!\">\r\n                          <IconButton\r\n                            className={classes.textAreaButton}\r\n                            onClick={this.readLicenseKeyFromFile}\r\n                          >\r\n                            <FileUploadIcon />\r\n                          </IconButton>\r\n                        </Tooltip>\r\n                      </div>\r\n                    </InputAdornment>\r\n                  ),\r\n                }}\r\n              />\r\n            </div>\r\n\r\n            <Button\r\n              className={classes.submit}\r\n              type=\"submit\"\r\n              variant=\"contained\"\r\n              color=\"primary\"\r\n              disabled={isSubmitting}\r\n            >\r\n              Submit\r\n            </Button>\r\n          </ValidatorForm>\r\n          {this.state.licenseStatus !== \"VALID\" && this.state.os !== \"Windows\" && (\r\n            <div>\r\n              <strong>To Update LicenseKey do following steps: </strong>\r\n              <br />\r\n              <ol>\r\n                <li>Get Valid License Key</li>\r\n                <li>Open env.list</li>\r\n                <li>Paste Valid License Key to HSA_LICENSE_KEY</li>\r\n                <li>Shutdown docker container</li>\r\n                <li>\r\n                  Restart Container with <code>docker-compose up</code>\r\n                </li>\r\n              </ol>\r\n            </div>\r\n          )}\r\n        </Paper>\r\n      </main>\r\n    );\r\n  }\r\n}\r\n\r\nLicensingPage.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n};\r\n\r\nexport default withStyles(styles)(LicensingPage);\r\n","import React, { Component } from \"react\";\r\n\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport { withRouter } from \"react-router-dom\";\r\n\r\nimport Avatar from \"@mui/material/Avatar\";\r\nimport Button from \"@mui/material/Button\";\r\nimport CssBaseline from \"@mui/material/CssBaseline\";\r\nimport LockOutlinedIcon from \"@mui/icons-material/LockOutlined\";\r\nimport Paper from \"@mui/material/Paper\";\r\nimport Typography from \"@mui/material/Typography\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\nimport { ValidatorForm, TextValidator } from \"react-material-ui-form-validator\";\r\n\r\nimport { authenticationService } from \"../common/services\";\r\nimport Backend from \"../common/utils/Backend\";\r\n\r\nconst styles = (theme) => ({\r\n  main: {\r\n    width: \"auto\",\r\n    display: \"block\", // Fix IE 11 issue.\r\n    marginLeft: theme.spacing(3),\r\n    marginRight: theme.spacing(3),\r\n    // When screen sizes surpasses the theshold, change the look\r\n    [theme.breakpoints.up(600 + 3 * 2 * 8)]: {\r\n      // [theme.breakpoints.up(500 + theme.spacing(3 * 2))]: {\r\n      // In the mui v5 update, theme.spacing returns \"48px\" instead of 48.\r\n      // Therefore, hardcoding the default theme.spacing multiplyer of 8.\r\n      width: 600,\r\n      marginLeft: \"auto\",\r\n      marginRight: \"auto\",\r\n    },\r\n  },\r\n  paper: {\r\n    marginTop: theme.spacing(8),\r\n    display: \"flex\",\r\n    flexDirection: \"column\",\r\n    alignItems: \"center\",\r\n    padding: `${theme.spacing(2)} ${theme.spacing(3)} ${theme.spacing(3)}`,\r\n  },\r\n  avatar: {\r\n    margin: theme.spacing(1),\r\n    backgroundColor: theme.palette.secondary.main,\r\n  },\r\n  form: {\r\n    width: \"100%\", // Fix IE 11 issue.\r\n    marginTop: theme.spacing(1),\r\n  },\r\n  submit: {\r\n    marginTop: theme.spacing(3),\r\n  },\r\n});\r\n\r\nclass LoginPage extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n    this.state = {\r\n      formData: {\r\n        email: \"\",\r\n        password: \"\",\r\n      },\r\n      isSubmitting: false,\r\n      users: null,\r\n      isUsername: false,\r\n      emailErrorText: \"Email or Username is not valid\",\r\n    };\r\n\r\n    // if mounted in Storybook and test users should be used\r\n    if (props.testUserList) {\r\n      console.log(\"No LicensingInfo loaded, since test users used!\");\r\n    } else {\r\n      // redirect if license is not VALID\r\n      Backend.getLicensingInfo((license) => {\r\n        if (license.licenseStatus !== \"VALID\") {\r\n          authenticationService.logout();\r\n          this.props.history.push(\"/licensing\");\r\n        }\r\n      });\r\n      // redirect to home if already logged in\r\n      if (authenticationService.currentUserValue) {\r\n        this.props.history.push(\"/\");\r\n      }\r\n    }\r\n  }\r\n\r\n  validateEmail(email) {\r\n    const re =\r\n      /^(([^<>()[\\]\\\\.,;:\\s@\"]+(\\.[^<>()[\\]\\\\.,;:\\s@\"]+)*)|(\".+\"))@((\\[[0-9]{1,3}\\.[0-9]{1,3}\\.[0-9]{1,3}\\.[0-9]{1,3}\\])|(([a-zA-Z\\-0-9]+\\.)+[a-zA-Z]{2,}))$/;\r\n    return re.test(String(email).toLowerCase());\r\n  }\r\n\r\n  validateUserOrEmail = (userList, value) => {\r\n    // Backend get all users\r\n    // check if valid user\r\n    let valid = false;\r\n    this.setState({ users: userList });\r\n\r\n    // allow (and trim) spaces at the start and end of the email/mail + make sure only one space in name\r\n    // https://stackoverflow.com/questions/16974664/remove-extra-spaces-in-string-javascript\r\n    value = value.replace(/\\s{2,}/g, \" \").trim();\r\n\r\n    userList.forEach((u) => {\r\n      if (value === u.fullName) {\r\n        this.setState({ isUsername: true });\r\n        valid = true;\r\n      } else if (value === u.email) {\r\n        this.setState({ isUsername: false });\r\n        valid = true;\r\n      }\r\n    });\r\n\r\n    if (this.validateEmail(value)) {\r\n      this.setState({ emailErrorText: \"No User found for given Email\" });\r\n    } else {\r\n      this.setState({\r\n        emailErrorText: \"No User found for given Username\",\r\n      });\r\n    }\r\n    return valid;\r\n  };\r\n\r\n  componentDidMount() {\r\n    const { testUserList } = this.props;\r\n    // if mounted in Storybook and test users should be used\r\n    if (testUserList) {\r\n      ValidatorForm.addValidationRule(\"isUserOrEmail\", (value) =>\r\n        this.validateUserOrEmail(testUserList, value)\r\n      );\r\n    } else {\r\n      //Create Custom Validation Rule to allow User Name and e-mail\r\n      Backend.getUserList((userList) => {\r\n        ValidatorForm.addValidationRule(\"isUserOrEmail\", (value) =>\r\n          this.validateUserOrEmail(userList, value)\r\n        );\r\n      });\r\n    }\r\n  }\r\n\r\n  componentWillUnmount() {\r\n    ValidatorForm.removeValidationRule(\"isUserOrEmail\");\r\n  }\r\n\r\n  handleChange = (event) => {\r\n    const { formData } = this.state;\r\n    formData[event.target.name] = event.target.value;\r\n    this.setState({ formData });\r\n  };\r\n\r\n  handleSubmit = () => {\r\n    this.setState({\r\n      isSubmitting: true,\r\n    });\r\n\r\n    const { formData, isUsername, users } = this.state;\r\n    let { email } = formData;\r\n\r\n    // allow (and trim) spaces at the start and end of the email/mail + make sure only one space in name\r\n    // https://stackoverflow.com/questions/16974664/remove-extra-spaces-in-string-javascript\r\n    email = email.replace(/\\s{2,}/g, \" \").trim();\r\n\r\n    if (isUsername) {\r\n      users.forEach((user) =>\r\n        user.fullName === email ? (email = user.email) : email\r\n      );\r\n    }\r\n\r\n    authenticationService.login(email, formData.password).then(\r\n      () => {\r\n        // window.location.reload(true); //clear cache\r\n        const { from } = this.props.location.state || {\r\n          from: { pathname: \"/\" },\r\n        };\r\n        this.props.history.push(from);\r\n      },\r\n      (error) => {\r\n        this.setState({\r\n          error: error,\r\n          isSubmitting: false,\r\n        });\r\n      }\r\n    );\r\n  };\r\n\r\n  render() {\r\n    const { classes } = this.props;\r\n    const { isSubmitting, error, formData, emailErrorText } = this.state;\r\n\r\n    return (\r\n      <main className={classes.main}>\r\n        <CssBaseline />\r\n        <Paper className={classes.paper}>\r\n          <Avatar className={classes.avatar}>\r\n            <LockOutlinedIcon />\r\n          </Avatar>\r\n          <Typography component=\"h1\" variant=\"h5\">\r\n            Sign In\r\n          </Typography>\r\n          <ValidatorForm className={classes.form} onSubmit={this.handleSubmit}>\r\n            {error && (\r\n              <Typography\r\n                align=\"center\"\r\n                variant=\"caption\"\r\n                style={{ color: \"#ff0000\" }}\r\n              >\r\n                {error}\r\n              </Typography>\r\n            )}\r\n            <TextValidator\r\n              fullWidth\r\n              margin=\"normal\"\r\n              id=\"email\"\r\n              name=\"email\"\r\n              label=\"Username/Email\"\r\n              type=\"text\"\r\n              validators={[\"required\", \"isUserOrEmail\"]}\r\n              errorMessages={[\"this field is required\", emailErrorText]}\r\n              onChange={this.handleChange}\r\n              value={formData.email}\r\n              inputProps={{ role: \"username\" }}\r\n              InputLabelProps={{ shrink: true }}\r\n            />\r\n            <TextValidator\r\n              fullWidth\r\n              margin=\"normal\"\r\n              id=\"password\"\r\n              name=\"password\"\r\n              label=\"password\"\r\n              type=\"password\"\r\n              suggested=\"current password\"\r\n              validators={[\"required\"]}\r\n              errorMessages={[\"this field is required\"]}\r\n              onChange={this.handleChange}\r\n              value={formData.password}\r\n              inputProps={{ role: \"password\" }}\r\n              InputLabelProps={{ shrink: true }}\r\n            />\r\n            <Button\r\n              type=\"submit\"\r\n              fullWidth\r\n              variant=\"contained\"\r\n              color=\"primary\"\r\n              className={classes.submit}\r\n              disabled={isSubmitting}\r\n            >\r\n              Sign In\r\n            </Button>\r\n          </ValidatorForm>\r\n        </Paper>\r\n      </main>\r\n    );\r\n  }\r\n}\r\n\r\nLoginPage.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  history: PropTypes.object,\r\n  location: PropTypes.object,\r\n  testUserList: PropTypes.array,\r\n};\r\n\r\nexport default withRouter(withStyles(styles)(LoginPage));\r\n","// Framework imports\r\nimport React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport { withRouter } from \"react-router-dom\";\r\n\r\n// External npm packages\r\nimport AppBar from \"@mui/material/AppBar\";\r\nimport Toolbar from \"@mui/material/Toolbar\";\r\nimport Typography from \"@mui/material/Typography\";\r\nimport Button from \"@mui/material/Button\";\r\nimport {\r\n  Popper,\r\n  Grow,\r\n  Paper,\r\n  ClickAwayListener,\r\n  MenuList,\r\n  MenuItem,\r\n  SvgIcon,\r\n  Tooltip,\r\n} from \"@mui/material\";\r\nimport {\r\n  ArrowDropDown,\r\n  Person,\r\n  ExitToApp,\r\n  CoPresent,\r\n  Build,\r\n  Info,\r\n  History,\r\n} from \"@mui/icons-material\";\r\nimport PermMediaIcon from \"@mui/icons-material/PermMedia\";\r\nimport FolderCopyIcon from \"@mui/icons-material/FolderCopy\";\r\nimport WorkIcon from \"@mui/icons-material/Work\";\r\nimport BarChartIcon from \"@mui/icons-material/BarChart\";\r\nimport ScannerIcon from \"@mui/icons-material/Scanner\";\r\nimport ScreenShareIcon from \"@mui/icons-material/ScreenShare\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n\r\n// HSA Packages\r\nimport Backend from \"../utils/Backend\";\r\nimport { authenticationService } from \"../services\";\r\nimport { viewerType } from \"../utils/Utils\";\r\n\r\nconst styles = (theme) => ({\r\n  root: {\r\n    height: \"100vh\",\r\n  },\r\n  grow: {\r\n    flexGrow: 1,\r\n  },\r\n  menuButton: {\r\n    marginLeft: -12,\r\n    marginRight: 20,\r\n    height: 50,\r\n    cursor: \"pointer\",\r\n  },\r\n  appbarPlaceholder: theme.mixins.toolbar,\r\n  headerButton: {\r\n    textTransform: \"none\",\r\n    height: 64,\r\n    padding: \"0 20px\",\r\n    borderRadius: 0,\r\n  },\r\n  menu: {\r\n    transformOrigin: \"center top\",\r\n    marginTop: 7,\r\n    marginLeft: -40,\r\n    minWidth: 200,\r\n  },\r\n  menuIcon: {\r\n    marginRight: 10,\r\n    color: \"#444\",\r\n  },\r\n  warningColor: {\r\n    color: theme.palette.warning.main,\r\n  },\r\n  errorColor: {\r\n    color: theme.palette.error.main,\r\n  },\r\n});\r\n\r\nclass NavigationBar extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n\r\n    this._isMounted = false;\r\n    this.state = {\r\n      currentUser: null,\r\n      open: false,\r\n      headline: \"\",\r\n      showDevButtons: false,\r\n      resultsPath: \"\",\r\n      isResultsButtonVisible: false,\r\n      extraButtonState: \"\", //none, results, project\r\n      scannerState: null,\r\n      expirationMessage: \"\",\r\n      canAccessLicensingPage: false,\r\n      canAccessAdminPage: false,\r\n      canAccessAITab: false,\r\n      canAccessCases: false,\r\n      canAccessScan: false,\r\n      canAccessFileView: false,\r\n    };\r\n\r\n    window.setNavigationbarTitle = this.setNavigationbarTitle;\r\n  }\r\n\r\n  // check if report button should be shown\r\n  // and check if report exist\r\n  checkProjectButton = (pathname) => {\r\n    let isResultsButtonVisible =\r\n      pathname.includes(\"/view/\") || pathname.includes(\"/esr_view/\");\r\n    if (this.state.isResultsButtonVisible !== isResultsButtonVisible) {\r\n      this.setMountedState({ isResultsButtonVisible });\r\n    }\r\n    if (isResultsButtonVisible) {\r\n      let uuid = pathname.split(\"view/\").slice(-1)[0];\r\n      let dir_path = \"/\" + uuid;\r\n      Backend.walkProjectDirFiles(dir_path, (result) => {\r\n        let reportExists = false;\r\n        for (let row of result) {\r\n          if (\r\n            row.path.endsWith(\"report.xlsx\") ||\r\n            row.path.endsWith(\"report.xlsm\")\r\n          ) {\r\n            reportExists = true;\r\n            break;\r\n          }\r\n        }\r\n        this.setMountedState({\r\n          resultsPath: reportExists ? \"/report/\" + uuid : \"\",\r\n          extraButtonState: \"results\",\r\n        });\r\n      });\r\n    } else {\r\n      if (pathname.includes(\"report/\")) {\r\n        let uuid = pathname.split(\"report/\").slice(-1)[0];\r\n        Backend.loadProject({ id: uuid }, (project) => {\r\n          this.setMountedState({\r\n            extraButtonState: \"project\",\r\n            projectPath: viewerType(project.type) + uuid,\r\n          });\r\n        });\r\n      } else {\r\n        this.setMountedState({\r\n          extraButtonState: \"\",\r\n          projectPath: \"\",\r\n        });\r\n      }\r\n    }\r\n  };\r\n\r\n  componentDidUpdate(prevProps) {\r\n    if (\r\n      prevProps.location.pathname === \"/login\" &&\r\n      this.props.location.pathname !== \"/login\"\r\n    ) {\r\n      this.updateUserGroups();\r\n    }\r\n  }\r\n\r\n  componentDidMount() {\r\n    this._isMounted = true;\r\n    if (this.props.location.pathname === \"/iframe.html\") return;\r\n\r\n    //on first load\r\n    this.checkProjectButton(location.pathname);\r\n    this.setPageHeadline();\r\n\r\n    //on path change\r\n    this.props.history.listen((location) => {\r\n      this.setPageHeadline();\r\n      this.checkProjectButton(location.pathname);\r\n    });\r\n\r\n    authenticationService.currentUser.subscribe((x) => {\r\n      this.setMountedState({\r\n        currentUser: x,\r\n      });\r\n      if (this.props.location.pathname !== \"/login\") {\r\n        this.updateUserGroups();\r\n      }\r\n    });\r\n\r\n    Backend.getLicensingInfo((license) => {\r\n      let scannerState = \"INVALID\";\r\n      let expirationMessage = \"\";\r\n      if (license.activeModules.length === 0) {\r\n        scannerState = \"VALID\";\r\n      } else {\r\n        const scannerData = license.activeModules.find(\r\n          (item) => item.name === \"HSAScanner\"\r\n        );\r\n        if (scannerData) {\r\n          const expirationDays = scannerData.expiresInDays;\r\n          if (expirationDays < 31) {\r\n            if (expirationDays < 0) {\r\n              if (expirationDays === -1) {\r\n                expirationMessage = \"Expired for 1 day!\";\r\n              } else {\r\n                expirationMessage = \"Expired for \" + -expirationDays + \" days!\";\r\n              }\r\n            } else {\r\n              if (expirationDays == 1) {\r\n                expirationMessage = \"Expires in 1 day!\";\r\n              } else {\r\n                expirationMessage = \"Expires in \" + expirationDays + \" days!\";\r\n              }\r\n            }\r\n          }\r\n          if (scannerData.isExpired) {\r\n            scannerState = \"EXPIRED\";\r\n          } else {\r\n            scannerState = \"VALID\";\r\n          }\r\n        }\r\n      }\r\n\r\n      this.setMountedState({ scannerState, expirationMessage });\r\n    });\r\n  }\r\n\r\n  componentWillUnmount() {\r\n    this._isMounted = false;\r\n  }\r\n\r\n  setMountedState = (stateObject, callback) => {\r\n    if (this._isMounted) {\r\n      this.setState(stateObject, callback);\r\n    }\r\n  };\r\n\r\n  updateUserGroups = () => {\r\n    Backend.getCurrentUser((user) => {\r\n      if (user.group) {\r\n        this.setState({\r\n          canAccessLicensingPage: user.group.canAccessLicensingPage,\r\n          canAccessAdminPage: user.group.canAccessAdminPage,\r\n          canAccessAITab: user.group.canAccessAITab,\r\n          canAccessCases: user.group.name === \"Admin\",\r\n          canAccessScan: user.group.name === \"Admin\",\r\n          canAccessFileView: user.group.name === \"Admin\",\r\n        });\r\n      }\r\n    });\r\n  };\r\n\r\n  setNavigationbarTitle = (title) => {\r\n    this.setMountedState({ headline: title });\r\n  };\r\n\r\n  logout = () => {\r\n    authenticationService.logout();\r\n    this.props.history.push(\"/login\");\r\n    // window.location.reload(true);\r\n  };\r\n\r\n  handleMenu() {\r\n    this.setMountedState((state) => ({ open: !state.open }));\r\n  }\r\n\r\n  handleClose(event) {\r\n    if (this.anchorEl.contains(event.target)) {\r\n      return;\r\n    }\r\n\r\n    this.setMountedState({ open: false });\r\n  }\r\n\r\n  setPageHeadline() {\r\n    if (this.props.location.pathname === \"/iframe.html\") return;\r\n    let path = window.location.href;\r\n    const titleMap = {\r\n      \"/view/\": \"Viewer\",\r\n      \"/report/\": \"Results\",\r\n      \"/admin\": \"Admin Settings\",\r\n      \"/login\": \"Login\",\r\n      \"/about\": \"About\",\r\n      \"/cases\": \"Cases\",\r\n      \"/file_view\": \"Files\",\r\n      \"/ai_view\": \"AI\",\r\n      \"/classroom\": \"Classroom\",\r\n      \"/prediction\": \"Prediction\",\r\n      \"/licensing\": \"Licenseing\",\r\n      \"/scan_view\": \"Scan Viewer\",\r\n    };\r\n    Backend.getVersion((data) => {\r\n      let title = \"Projects\";\r\n      for (const pathFragment in titleMap) {\r\n        if (path.includes(pathFragment)) {\r\n          title = titleMap[pathFragment];\r\n          break;\r\n        }\r\n      }\r\n\r\n      const fullVersion = data.version.split(\".\");\r\n      const versionLength = fullVersion.length;\r\n      const version =\r\n        versionLength > 3 ? fullVersion.slice(0, 3).join(\".\") : data.version;\r\n      window.document.title = `${title} - HSA Kit ${version}`;\r\n    });\r\n    let headline = \"Home\";\r\n    for (const pathFragment in titleMap) {\r\n      if (path.includes(pathFragment)) {\r\n        headline = titleMap[pathFragment];\r\n        break;\r\n      }\r\n    }\r\n    if (this.state.headline !== headline) {\r\n      this.setMountedState({ headline: headline });\r\n    }\r\n    return headline;\r\n  }\r\n\r\n  render() {\r\n    const {\r\n      currentUser,\r\n      open,\r\n      showDevButtons,\r\n      scannerState,\r\n      expirationMessage,\r\n      canAccessLicensingPage,\r\n      canAccessAdminPage,\r\n    } = this.state;\r\n    const { classes } = this.props;\r\n\r\n    return (\r\n      <AppBar position=\"fixed\">\r\n        <Toolbar>\r\n          <img\r\n            className={classes.menuButton}\r\n            onClick={() => this.props.history.push(\"/\")}\r\n            alt=\"hsa logo\"\r\n            src=\"/img/hsa_logo.png\"\r\n          />\r\n          <Typography variant=\"h6\" color=\"inherit\" className={classes.grow}>\r\n            {this.state.headline}\r\n          </Typography>\r\n          <Typography variant=\"h6\" color=\"inherit\" className={classes.grow} />\r\n          {currentUser ? (\r\n            <React.Fragment>\r\n              {/* hidden log file download button */}\r\n              <div\r\n                style={{\r\n                  position: \"absolute\",\r\n                  top: 0,\r\n                  right: 0,\r\n                  height: \"100%\",\r\n                  width: 20,\r\n                }}\r\n                onClick={() => {\r\n                  Backend.getAbout((result) => {\r\n                    if (result.logFiles && result.logFiles.length > 0) {\r\n                      let newestLogFile = result.logFiles[0];\r\n\r\n                      const a = document.createElement(\"a\");\r\n                      let url =\r\n                        \"api/about/logfile?name=\" +\r\n                        window.decodeURIComponent(newestLogFile);\r\n                      a.href = url;\r\n                      a.download = url.split(\"/\").pop();\r\n                      document.body.appendChild(a);\r\n                      a.click();\r\n                      document.body.removeChild(a);\r\n                    }\r\n                  });\r\n                }}\r\n              ></div>\r\n              <Button\r\n                style={{\r\n                  position: \"relative\",\r\n                  minWidth: 130,\r\n                  background:\r\n                    this.state.headline === \"Home\" ? \"rgba(0,0,0,0.2)\" : \"none\",\r\n                }}\r\n                onClick={() => {\r\n                  this.props.history.push(\"/\");\r\n                  this.setState({ headline: \"Home\" });\r\n                }}\r\n                className={classes.headerButton}\r\n                color=\"inherit\"\r\n              >\r\n                <WorkIcon\r\n                  style={{\r\n                    position: \"absolute\",\r\n                    top: 17,\r\n                    left: 22,\r\n                    filter: \"drop-shadow( -2px 2px 0px rgba(6,115,193,1))\",\r\n                    zIndex: 1,\r\n                  }}\r\n                />\r\n                <WorkIcon\r\n                  style={{\r\n                    marginRight: 5,\r\n                    position: \"relative\",\r\n                    right: 3,\r\n                    top: 2,\r\n                  }}\r\n                />\r\n                <strong>Projects</strong>\r\n              </Button>\r\n\r\n              <Button\r\n                disabled={!this.state.canAccessAITab}\r\n                style={{\r\n                  position: \"relative\",\r\n                  background:\r\n                    this.state.headline === \"AI Viewer\"\r\n                      ? \"rgba(0,0,0,0.2)\"\r\n                      : \"none\",\r\n                }}\r\n                onClick={() => {\r\n                  this.props.history.push(\"/ai_view\");\r\n                  this.setState({ headline: \"AI Viewer\" });\r\n                }}\r\n                className={classes.headerButton}\r\n                color=\"inherit\"\r\n              >\r\n                <BarChartIcon\r\n                  style={{\r\n                    marginRight: 5,\r\n                    position: \"relative\",\r\n                    right: 3,\r\n                    top: 2,\r\n                  }}\r\n                />\r\n                <strong>AI</strong>\r\n              </Button>\r\n\r\n              <Button\r\n                disabled={!this.state.canAccessCases}\r\n                style={{\r\n                  background:\r\n                    this.state.headline === \"Cases\"\r\n                      ? \"rgba(0,0,0,0.2)\"\r\n                      : \"none\",\r\n                }}\r\n                onClick={() => this.props.history.push(\"/cases\")}\r\n                className={classes.headerButton}\r\n                color=\"inherit\"\r\n              >\r\n                <PermMediaIcon style={{ marginRight: 5 }} />\r\n                <strong>Cases</strong>\r\n              </Button>\r\n\r\n              <Tooltip\r\n                title={this.state.canAccessFileView ? \"\" : \"No Permission!\"}\r\n              >\r\n                <span>\r\n                  <Button\r\n                    style={{\r\n                      background:\r\n                        this.state.headline === \"Files\"\r\n                          ? \"rgba(0,0,0,0.2)\"\r\n                          : \"none\",\r\n                    }}\r\n                    disabled={!this.state.canAccessFileView}\r\n                    onClick={() => this.props.history.push(\"/file_view\")}\r\n                    className={classes.headerButton}\r\n                    color=\"inherit\"\r\n                  >\r\n                    <FolderCopyIcon style={{ marginRight: 5 }} />\r\n                    <strong>Files</strong>\r\n                  </Button>\r\n                </span>\r\n              </Tooltip>\r\n\r\n              <Tooltip title={expirationMessage}>\r\n                <span>\r\n                  <Button\r\n                    disabled={\r\n                      scannerState !== \"VALID\" || !this.state.canAccessScan\r\n                    }\r\n                    style={{\r\n                      position: \"relative\",\r\n                      background:\r\n                        this.state.headline === \"Scan Viewer\"\r\n                          ? \"rgba(0,0,0,0.2)\"\r\n                          : \"none\",\r\n                    }}\r\n                    onClick={() => {\r\n                      this.props.history.push(\"/scan_view\");\r\n                    }}\r\n                    className={classes.headerButton}\r\n                    color=\"inherit\"\r\n                  >\r\n                    <ScannerIcon\r\n                      style={{\r\n                        marginRight: 5,\r\n                      }}\r\n                      className={\r\n                        scannerState !== \"VALID\" || expirationMessage === \"\"\r\n                          ? \"\"\r\n                          : classes.warningColor\r\n                      }\r\n                    />\r\n                    <strong\r\n                      className={\r\n                        scannerState !== \"VALID\" || expirationMessage === \"\"\r\n                          ? \"\"\r\n                          : classes.warningColor\r\n                      }\r\n                    >\r\n                      Scan\r\n                    </strong>\r\n                  </Button>\r\n                </span>\r\n              </Tooltip>\r\n\r\n              {this.state.extraButtonState !== \"\" && (\r\n                <React.Fragment>\r\n                  {this.state.extraButtonState === \"results\" ? (\r\n                    <Button\r\n                      style={{\r\n                        background:\r\n                          this.state.headline &&\r\n                          this.state.headline.includes(\"Results:\")\r\n                            ? \"rgba(0,0,0,0.2)\"\r\n                            : \"none\",\r\n                      }}\r\n                      disabled={this.state.resultsPath === \"\"}\r\n                      onClick={() =>\r\n                        this.props.history.push(this.state.resultsPath)\r\n                      }\r\n                      className={classes.headerButton}\r\n                      color=\"inherit\"\r\n                    >\r\n                      <SvgIcon style={{ marginRight: 5 }}>\r\n                        <svg\r\n                          aria-hidden=\"true\"\r\n                          focusable=\"false\"\r\n                          data-prefix=\"fas\"\r\n                          data-icon=\"table\"\r\n                          className=\"svg-inline--fa fa-table fa-w-16\"\r\n                          role=\"img\"\r\n                          xmlns=\"http://www.w3.org/2000/svg\"\r\n                          viewBox=\"0 0 512 512\"\r\n                        >\r\n                          <path\r\n                            fill=\"currentColor\"\r\n                            d=\"M464 32H48C21.49 32 0 53.49 0 80v352c0 26.51 21.49 48 48 48h416c26.51 0 48-21.49 48-48V80c0-26.51-21.49-48-48-48zM224 416H64v-96h160v96zm0-160H64v-96h160v96zm224 160H288v-96h160v96zm0-160H288v-96h160v96z\"\r\n                          ></path>\r\n                        </svg>\r\n                      </SvgIcon>\r\n                      <strong>Results</strong>\r\n                    </Button>\r\n                  ) : (\r\n                    <Button\r\n                      disabled={this.state.projectPath === \"\"}\r\n                      onClick={() => {\r\n                        this.props.history.push(this.state.projectPath);\r\n                      }}\r\n                      className={classes.headerButton}\r\n                      color=\"inherit\"\r\n                    >\r\n                      <WorkIcon style={{ marginRight: 5 }} />\r\n                      <strong>Project</strong>\r\n                    </Button>\r\n                  )}\r\n                </React.Fragment>\r\n              )}\r\n\r\n              {showDevButtons && (\r\n                <React.Fragment>\r\n                  <Button\r\n                    style={{\r\n                      background:\r\n                        this.state.headline === \"Prediction\"\r\n                          ? \"rgba(0,0,0,0.2)\"\r\n                          : \"none\",\r\n                    }}\r\n                    onClick={() => this.props.history.push(\"/prediction\")}\r\n                    className={classes.headerButton}\r\n                    color=\"inherit\"\r\n                  >\r\n                    <WorkIcon style={{ marginRight: 5 }} />\r\n                    <strong>Prediction</strong>\r\n                  </Button>\r\n                  <Button\r\n                    style={{\r\n                      background:\r\n                        this.state.headline === \"Classroom\"\r\n                          ? \"rgba(0,0,0,0.2)\"\r\n                          : \"none\",\r\n                    }}\r\n                    onClick={() => {\r\n                      if (window.location.href.includes(\"/view/\")) {\r\n                        window.toggleClassRoomChat();\r\n                      } else {\r\n                        window.openWarningDialog(\"Please open a Project first\");\r\n                      }\r\n                    }}\r\n                    className={classes.headerButton}\r\n                    color=\"inherit\"\r\n                  >\r\n                    <ScreenShareIcon style={{ marginRight: 5 }} />\r\n                    <strong>Classroom</strong>\r\n                  </Button>\r\n                </React.Fragment>\r\n              )}\r\n\r\n              <Button\r\n                ref={(node) => {\r\n                  this.anchorEl = node;\r\n                }}\r\n                className={classes.headerButton}\r\n                aria-owns={open ? \"menu-appbar\" : undefined}\r\n                aria-haspopup=\"true\"\r\n                onClick={() => this.handleMenu()}\r\n                color=\"inherit\"\r\n              >\r\n                <Person style={{ marginRight: 5 }} />\r\n                <strong>{currentUser.fullName}</strong>\r\n                <ArrowDropDown style={{ marginLeft: 5 }} />\r\n              </Button>\r\n              <Popper\r\n                open={open}\r\n                anchorEl={this.anchorEl}\r\n                transition\r\n                disablePortal\r\n              >\r\n                {({ TransitionProps }) => (\r\n                  <Grow\r\n                    {...TransitionProps}\r\n                    id=\"menu-list-grow\"\r\n                    className={classes.menu}\r\n                  >\r\n                    <Paper square>\r\n                      <ClickAwayListener\r\n                        onClickAway={(e) => this.handleClose(e)}\r\n                      >\r\n                        <MenuList style={{ padding: 0 }}>\r\n                          {canAccessAdminPage && (\r\n                            <MenuItem\r\n                              onClick={() => this.props.history.push(\"/admin\")}\r\n                            >\r\n                              <CoPresent className={classes.menuIcon} />\r\n                              Admin\r\n                            </MenuItem>\r\n                          )}\r\n                          {canAccessLicensingPage && (\r\n                            <MenuItem\r\n                              onClick={() => {\r\n                                this.props.history.push(\"/licensing\");\r\n                              }}\r\n                            >\r\n                              <Build className={classes.menuIcon} />\r\n                              Licensing Page\r\n                            </MenuItem>\r\n                          )}\r\n                          <MenuItem\r\n                            onClick={() =>\r\n                              this.props.history.push(\"/userhistory\")\r\n                            }\r\n                          >\r\n                            <History className={classes.menuIcon} />\r\n                            User Access History\r\n                          </MenuItem>\r\n                          <MenuItem\r\n                            onClick={() => this.props.history.push(\"/about\")}\r\n                          >\r\n                            <Info className={classes.menuIcon} />\r\n                            About / Help\r\n                          </MenuItem>\r\n                          <MenuItem onClick={this.logout}>\r\n                            <ExitToApp className={classes.menuIcon} />\r\n                            Logout\r\n                          </MenuItem>\r\n                        </MenuList>\r\n                      </ClickAwayListener>\r\n                    </Paper>\r\n                  </Grow>\r\n                )}\r\n              </Popper>\r\n            </React.Fragment>\r\n          ) : (\r\n            <Button color=\"inherit\" href=\"/login\">\r\n              Sign In\r\n            </Button>\r\n          )}\r\n        </Toolbar>\r\n      </AppBar>\r\n    );\r\n  }\r\n}\r\n\r\nNavigationBar.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  history: PropTypes.object,\r\n  location: PropTypes.object,\r\n};\r\n\r\nexport default withRouter(withStyles(styles)(NavigationBar));\r\n","export default __webpack_public_path__ + \"static/media/p1.d8b6b771.jpg\";","export default __webpack_public_path__ + \"static/media/p2.28be19b6.jpg\";","export default __webpack_public_path__ + \"static/media/p3.79920250.jpg\";","export default __webpack_public_path__ + \"static/media/p4.bcf3e966.jpg\";","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport p1 from \"./images/p1.jpg\";\r\nimport p2 from \"./images/p2.jpg\";\r\nimport p3 from \"./images/p3.jpg\";\r\nimport p4 from \"./images/p4.jpg\";\r\n\r\nimport { Paper } from \"@mui/material\";\r\n\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n\r\nconst styles = {\r\n  root: {\r\n    background: \"#EEEEEE\",\r\n    width: \"100%\",\r\n    height: \"100%\",\r\n    overflowY: \"auto\",\r\n    padding: 5,\r\n  },\r\n  paper: {\r\n    width: 800,\r\n    margin: \"10px auto\",\r\n    padding: 10,\r\n    \"& img\": {\r\n      width: \"100%\",\r\n    },\r\n  },\r\n};\r\n\r\nclass PredictionPage extends Component {\r\n  state = {};\r\n\r\n  render() {\r\n    const { classes } = this.props;\r\n    const images = [p1, p2, p3, p4];\r\n    return (\r\n      <div className={classes.root}>\r\n        {images.map((item, idx) => (\r\n          <Paper key={idx} className={classes.paper}>\r\n            <img src={item} alt=\"\" />\r\n          </Paper>\r\n        ))}\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nPredictionPage.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n};\r\n\r\nexport default withStyles(styles)(PredictionPage);\r\n","/**\r\n * Generates an array which references all contained structures to their parent structure.\r\n * Each row of the array starts with the child and ends with the topmost parent.\r\n * The function stops at structures or substructures.\r\n * Overlying structures will not see the subtypes contained inside the structure.\r\n * @param {Array} structures All structures, substructures, and subtypes seen in sidebar.\r\n * @returns {Array} Array of parents, child is the first entry of each row, respectively.\r\n */\r\nexport function generateParentList(structures) {\r\n  let parentList = [];\r\n  // First, each structure contains itself sa a minimum.\r\n  for (let structure of structures) {\r\n    parentList.push([structure]);\r\n  }\r\n\r\n  // Find all parents of a structure, bottom up.\r\n  for (let idx = 0; idx < parentList.length; idx++) {\r\n    let continueSearch = true;\r\n    while (continueSearch) {\r\n      let currentStruct = parentList[idx];\r\n      // We're done when we reach the topmost layer\r\n      // or if the next level would be a (sub-) structure\r\n      if (\r\n        !currentStruct[currentStruct.length - 1].classificationSubtype ||\r\n        currentStruct[currentStruct.length - 1].parentId === 0\r\n      ) {\r\n        continueSearch = false;\r\n        break;\r\n      }\r\n\r\n      // Add the parent structure to the row.\r\n      parentList[idx].push(\r\n        structures[\r\n          getParentIndex(currentStruct[currentStruct.length - 1], structures)\r\n        ]\r\n      );\r\n    }\r\n  }\r\n\r\n  return parentList;\r\n}\r\n\r\n/**\r\n * Generates an array which references all contained structures to their child structures.\r\n * Each row of the array starts with the parent and ends with the bottom-most child.\r\n * The function stops at structures or substructures.\r\n * Underlying structures will not see the subtypes contained inside the structure.\r\n * @param {Array} structures All structures, substructures, and subtypes seen in sidebar.\r\n * @returns {Array} Array of children, parent is the first entry of each row, respectively.\r\n */\r\nexport function generateChildrenList(structures) {\r\n  let childrenList = [];\r\n  for (let structure of structures) {\r\n    childrenList.push(\r\n      generateAListOfAllChildrenRecursively(structure, structures)\r\n    );\r\n  }\r\n  return childrenList;\r\n}\r\n\r\n/**\r\n * Recursively goes down the structure tree, beginning from the given parent.\r\n * Adds all structures along the way until it reaches a structure without children.\r\n * @param {Object} structure The selected structure/substructure/subtype for this iteration.\r\n * @param {Array} structures All structures, substructures, and subtypes seen in sidebar.\r\n * @returns {Array} Array of Children when done.\r\n * @returns {Array} Object of a child in an array when child does not have a child of its own.\r\n */\r\nfunction generateAListOfAllChildrenRecursively(structure, structures) {\r\n  // Continue until we reach the bottom-most layer\r\n  // or if the current structure would be a (sub-) structure\r\n  if (structure.hasChild) {\r\n    // Add the structure itself to the tree\r\n    let allChildren = [];\r\n    allChildren.push(structure);\r\n\r\n    // Find all children of the structure, that are subtypes, not substructures\r\n    let children = structures.filter(\r\n      (struct) =>\r\n        struct.classificationSubtype && struct.parentId === structure.id\r\n    );\r\n\r\n    // Recursively add all children and children of children\r\n    for (let child of children) {\r\n      allChildren.push(\r\n        ...generateAListOfAllChildrenRecursively(child, structures)\r\n      );\r\n    }\r\n    return allChildren;\r\n  } else {\r\n    // No children, bottom-level child returns itself\r\n    return [structure];\r\n  }\r\n}\r\n\r\n/**\r\n * Returns index of the topmost parent structure\r\n * @param {Object} structure The selected structure/substructure/subtype from the sidebar.\r\n * @param {Array} structures All structures, substructures, and subtypes seen in sidebar.\r\n * @returns {Int} the index of the topmost parent structure.\r\n */\r\nexport function getParentIndexLayer(structure, structures) {\r\n  let index = structures.findIndex((element) => element === structure);\r\n  while (\r\n    structures[index].subtypeLevel !== 0 &&\r\n    structures[index].classificationSubtype\r\n  ) {\r\n    index = getParentIndex(structures[index], structures);\r\n  }\r\n  return structures.findIndex((element) => element === structures[index]);\r\n}\r\n\r\n/**\r\n * Returns index of the direct parent structure\r\n * @param {Object} structure The selected structure/substructure/subtype from the sidebar.\r\n * @param {Array} structures All structures, substructures, and subtypes seen in sidebar.\r\n * @returns {Int} the index of the parent structure.\r\n */\r\nexport function getParentIndex(structure, structures) {\r\n  // return index of parent structure\r\n  return structures.findIndex((element) => element.id === structure.parentId);\r\n}\r\n\r\n/**\r\n * Returns objects for a given structure, including its subtypes.\r\n * @param {Object} structure - The selected structure/substructure/subtype from the sidebar.\r\n * @param {Array} structures - All structures, substructures, and subtypes seen in the sidebar.\r\n * @param {List} roiLayers - Annotations of the structures ordered by structure.\r\n * @returns {List} - All ROIs for a certain structure, including its subtypes.\r\n */\r\nexport function getContainedRegionRois(structure, structures, roiLayers) {\r\n  // Find the index of the given structure within the structures array\r\n  const idx = structures.findIndex((struct) => struct.id === structure.id);\r\n  // Generate a list of parent structures for each structure in the structures array\r\n  const parentList = generateParentList(structures);\r\n\r\n  // Find the direct parent of the given structure\r\n  const parent = parentList[idx][parentList[idx].length - 1];\r\n\r\n  // Find the index of the parent structure within the structures array\r\n  const parentIdx = structures.findIndex((struct) => struct.id === parent.id);\r\n\r\n  // Generate a list of children structures for each structure in the structures array,\r\n  // then retrieve the children IDs for the given structure\r\n  const decendantIds = generateChildrenList(structures)[idx].map(\r\n    ({ id }) => id\r\n  );\r\n\r\n  // Filter the ROI layer of the parent structure to only include ROIs\r\n  // that belong to the given structure and its decendants\r\n  return roiLayers[parentIdx].layer.regionRois.filter((roi) =>\r\n    decendantIds.includes(roi.structureId)\r\n  );\r\n}\r\n\r\n/**\r\n * Updates the full structure tree of a structure, ensuring correctly displayed icons.\r\n * @param {Object} structure The full tree of this structure will be updated.\r\n * @param {Array} structures All structures. Contains the structure given.\r\n * @returns {Array} Updated structures.\r\n */\r\nexport function updateStructures(structure, structures) {\r\n  // Check for missing strucutre import\r\n  if (!structure) {\r\n    console.debug(\"Error: No structure given, canceling strucutre update\");\r\n    return structures;\r\n  }\r\n\r\n  // Get toplevel parent\r\n  let toplevelParentIndex = getParentIndexLayer(structure, structures);\r\n\r\n  // Not found, therefore return unedited structures\r\n  if (toplevelParentIndex === -1) {\r\n    console.debug(\r\n      \"Error: Could not find top level parent when updating structures.\"\r\n    );\r\n    return structures;\r\n  }\r\n\r\n  // Get all children of toplevel parent\r\n  let fullChildrenList = generateChildrenList(structures);\r\n  let children = fullChildrenList[toplevelParentIndex];\r\n\r\n  // Update their status\r\n  for (let structure of children) {\r\n    // Find children of currently viewed child\r\n    let currentChildren = fullChildrenList.find(\r\n      (children) => children[0].id === structure.id\r\n    );\r\n\r\n    // Update properties\r\n    structure.hasChild = currentChildren.length > 0;\r\n\r\n    // Find location of current structure in structures\r\n    let structureIndex = structures.findIndex(\r\n      (struct) => struct.id === structure.id\r\n    );\r\n\r\n    // Overwrite with updated properties\r\n    structures[structureIndex] = structure;\r\n  }\r\n\r\n  return structures;\r\n}\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport RBush from \"rbush\";\r\nimport { getUnusedColor } from \"../../common/utils/RandomColorGenerator\";\r\nimport {\r\n  getParentIndexLayer,\r\n  updateStructures,\r\n} from \"../utils/StructuresUtils\";\r\nimport Backend from \"../../common/utils/Backend\";\r\n\r\nconst ProjectContext = React.createContext();\r\n\r\nexport const withProject = (Component) => {\r\n  const WrappedComponent = (props) => (\r\n    <ProjectContext.Consumer>\r\n      {(context) => <Component {...props} projectContext={context} />}\r\n    </ProjectContext.Consumer>\r\n  );\r\n\r\n  WrappedComponent.displayName = `withProject(${\r\n    Component.displayName || Component.name || \"Component\"\r\n  })`;\r\n\r\n  return WrappedComponent;\r\n};\r\n\r\n// this is the main component, it has to be added at the root of the app.\r\n// all components that use withProject(...) will have access to it via this.props.Project...\r\nclass ProjectProvider extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n\r\n    this._isMounted = false;\r\n    this.state = {\r\n      structures: [],\r\n      roiLayers: {},\r\n      commentLayers: {},\r\n      selectedLayer: 0,\r\n      ome: null,\r\n      activeTab: 0,\r\n      changingFile: false,\r\n      user: \"\",\r\n      isLoadingAnnotations: false,\r\n      galleryImageSize: 300,\r\n      userPermissions: {\r\n        canImportModels: true,\r\n        canExportModels: true,\r\n      },\r\n      groupPermissions: {\r\n        canAnnotate: true,\r\n        canTrainModel: true,\r\n        canRunJob: true,\r\n        canComment: true,\r\n        canEditStructures: true,\r\n        canAccessAITab: true,\r\n        canEditModel: true,\r\n      },\r\n      annotationsReduced: false,\r\n      totalRoiCount: -1,\r\n    };\r\n    this.usersData = {};\r\n    this.aiModelRepository = [];\r\n    this.aiStateObject = {};\r\n  }\r\n\r\n  setMountedState = (stateObject, callback) => {\r\n    if (this._isMounted) {\r\n      this.setState(stateObject, callback);\r\n    }\r\n  };\r\n\r\n  componentDidMount() {\r\n    this._isMounted = true;\r\n  }\r\n\r\n  componentWillUnmount() {\r\n    this._isMounted = false;\r\n  }\r\n\r\n  // set project from viewer, when project opens\r\n  initProject = (project) => {\r\n    this.setMountedState({ project });\r\n    // this.initSocket(project.id); // TODO: fix by changing flask-sock to socketio\r\n  };\r\n\r\n  initForeignHistory = () => {\r\n    if (this.socket) {\r\n      this.socket.send(\r\n        JSON.stringify({\r\n          state: \"init\",\r\n        })\r\n      );\r\n    }\r\n  };\r\n\r\n  componentDidUpdate = () => {\r\n    if (this.persistentStorage && this.state.project) {\r\n      const structuresStateList = this.state.structures.map((structure) => {\r\n        return {\r\n          isUnfolded: structure.isUnfolded,\r\n          showSubtypes: structure.showSubtypes,\r\n          visible: structure.visible,\r\n        };\r\n      });\r\n      this.persistentStorage.saveProjectTypeValue(\r\n        this.state.project.type,\r\n        \"structuresStateList\",\r\n        structuresStateList\r\n      );\r\n    }\r\n  };\r\n\r\n  //remove users, that didn't send updates for 10 seconds\r\n  cleanUsersData = () => {\r\n    const timeNow = performance.now();\r\n    for (const key of Object.keys(this.usersData)) {\r\n      if (timeNow - this.usersData[key].updateTime > 10000) {\r\n        console.log(\r\n          \"old user deleted from usersData:\",\r\n          this.usersData[key].user\r\n        );\r\n        delete this.usersData[key];\r\n      }\r\n    }\r\n  };\r\n\r\n  receiveSocketMessage = (data) => {\r\n    if (data.state) {\r\n      if (data.state === \"pos\") {\r\n        data.updateTime = performance.now();\r\n        this.usersData[data.uuid] = data;\r\n        this.cleanUsersData();\r\n      } else if (data.state === \"syncStructures\") {\r\n        this.syncStructures(data.structures);\r\n      } else {\r\n        window.projectHistory.receive(data);\r\n      }\r\n    }\r\n  };\r\n\r\n  syncStructures = (structures) => {\r\n    const { roiLayers } = this.state;\r\n    const fileRoiLayers = roiLayers[this.state.fileId];\r\n    const newRoiLayers = [];\r\n    for (const structure of structures) {\r\n      const tempRoiLayer = fileRoiLayers.find(\r\n        (roiLayer) => roiLayer.id === structure.id\r\n      );\r\n      if (tempRoiLayer) {\r\n        newRoiLayers.push(tempRoiLayer);\r\n      } else {\r\n        newRoiLayers.push({\r\n          id: structure.id,\r\n          layer: {\r\n            regionRois: [],\r\n            inverted: false,\r\n          },\r\n          tree: new RBush(),\r\n        });\r\n      }\r\n    }\r\n\r\n    roiLayers[this.state.fileId] = newRoiLayers;\r\n\r\n    this.setMountedState({\r\n      structures: structures,\r\n      roiLayers: roiLayers,\r\n    });\r\n  };\r\n\r\n  // set web socket for communication between current viewer/user and server\r\n  initSocket = (projectId) => {\r\n    this.socket = Backend.getAnnotationSocket(projectId);\r\n    window.projectHistory.socket = this.socket;\r\n    this.socket.onmessage = (ev) => {\r\n      const data = JSON.parse(ev.data);\r\n      this.receiveSocketMessage(data);\r\n    };\r\n\r\n    Backend.getCurrentUser((user) => {\r\n      this.setMountedState({ user: user.fullName });\r\n      let lastSendObject = null;\r\n\r\n      const intervalId = setInterval(() => {\r\n        if (\r\n          this.socket.readyState === 1 &&\r\n          typeof window.getMousePositionInImage === \"function\"\r\n        ) {\r\n          const p = window.getMousePositionInImage();\r\n          let objectToSend = {\r\n            state: \"pos\",\r\n            projectId: projectId,\r\n            user: user.fullName,\r\n            x: parseInt(p.x, 10),\r\n            y: parseInt(p.y, 10),\r\n          };\r\n          // send new position, if it has changed\r\n          if (\r\n            lastSendObject === null ||\r\n            lastSendObject.x === objectToSend.x ||\r\n            lastSendObject.y === objectToSend.y\r\n          ) {\r\n            this.socket.send(JSON.stringify(objectToSend));\r\n          }\r\n        } else {\r\n          console.log(\"socket not ready, readyState:\", this.socket.readyState);\r\n          if (this.socket.readyState === 3) {\r\n            console.log(\"socket broke, stopping interval!\");\r\n            clearInterval(intervalId);\r\n          }\r\n        }\r\n      }, 100);\r\n    });\r\n  };\r\n\r\n  /**\r\n   * Initializes the Project provider and passes a viewer component\r\n   *\r\n   * @param {object} viewer - Viewer Component\r\n   */\r\n  init = (viewer) => {\r\n    this.viewer = viewer;\r\n  };\r\n\r\n  setChangingFile = (a) => {\r\n    this.setMountedState({ changingFile: a });\r\n  };\r\n\r\n  setActiveTab = (tab) => {\r\n    this.setMountedState({ activeTab: tab });\r\n    this.activeTab = tab;\r\n    this.forceUpdate();\r\n  };\r\n\r\n  getActiveTab = () => {\r\n    return this.state.activeTab;\r\n  };\r\n\r\n  /**\r\n   * Returns Roi Region Object\r\n   *\r\n   * @param {int} structureId - id of the structure\r\n   * @param {int} fileId - id of the file, if undefined the currently opened file will be used\r\n   */\r\n  getRegionById = (structureId, fileId) => {\r\n    if (!fileId) fileId = this.state.fileId;\r\n    return this.state.roiLayers[fileId].find((c) => c.id === structureId);\r\n  };\r\n\r\n  getNumberOfChilds = (parentStructure) => {\r\n    const { structures } = this.state;\r\n\r\n    return structures.filter(\r\n      (element) => element.parentId === parentStructure.id\r\n    ).length;\r\n  };\r\n\r\n  importStructures = (structures) => {\r\n    const { roiLayers, fileId } = this.state;\r\n\r\n    for (let structure of structures) {\r\n      if (structure.tools.length === 0) {\r\n        if (structure.parentId > 0) {\r\n          let parentStructure = structures.find(\r\n            (item) => item.id === structure.parentId\r\n          );\r\n          if (parentStructure) {\r\n            structure.tools = parentStructure.tools;\r\n          }\r\n        }\r\n      }\r\n      const roiLayer = roiLayers[fileId].find((c) => c.id === structure.id);\r\n      if (!roiLayer) {\r\n        roiLayers[fileId].push({\r\n          id: structure.id,\r\n          layer: {\r\n            regionRois: [],\r\n            inverted: false,\r\n          },\r\n          tree: new RBush(),\r\n        });\r\n      }\r\n    }\r\n\r\n    this.sendStructures(structures);\r\n    this.setMountedState({ structures: structures, roiLayers });\r\n  };\r\n\r\n  /**\r\n   * Adds a new Dynamic Structure to the Project Model\r\n   *\r\n   * @param {string} name - Display name of the new structure\r\n   */\r\n  addStructure = (name, grid = false) => {\r\n    const { structures, roiLayers, viewerConfig, fileId } = this.state;\r\n\r\n    // findHighest id number\r\n    const newLayerId = structures.reduce((a, c) => Math.max(a, c.id), 0) + 1;\r\n\r\n    let newStructure = {\r\n      id: newLayerId,\r\n      dynamic: true,\r\n      //name: name,\r\n      label: name,\r\n      color: grid ? \"#00000000\" : getUnusedColor(structures),\r\n      visible: true,\r\n      allToolNames: structures[0].allToolNames,\r\n      tools: viewerConfig.project.dynamicStructure.tools,\r\n      classFrequencies: {\r\n        class_0: 0,\r\n        class_1: 0,\r\n        class_2: 0,\r\n        class_3: 0,\r\n        class_4: 0,\r\n        class_5: 0,\r\n        class_6: 0,\r\n      },\r\n      avgClassFrequnecy: 0,\r\n      isSubtype: false,\r\n      isUnfolded: true,\r\n      classificationSubtype: false,\r\n      parentId: 0,\r\n      showSubtypes: false,\r\n      subtypeLevel: 0,\r\n      defaultSelected: false,\r\n    };\r\n    newStructure = this.viewer.alterStructure(newStructure);\r\n\r\n    let newRoilayer = {\r\n      id: newLayerId,\r\n      layer: {\r\n        regionRois: [],\r\n        inverted: false,\r\n      },\r\n      tree: new RBush(),\r\n    };\r\n\r\n    structures.push(newStructure);\r\n\r\n    roiLayers[fileId].push(newRoilayer);\r\n\r\n    this.sendStructures(structures);\r\n    this.setMountedState({ structures, roiLayers });\r\n  };\r\n\r\n  sendStructures = (structures) => {\r\n    console.log(\"sending structures wip:\", structures);\r\n    // const { project } = this.state;\r\n\r\n    // const toSend = {\r\n    //   state: \"syncStructures\",\r\n    //   projectId: project.id,\r\n    //   structures: structures,\r\n    // };\r\n    // this.socket.send(JSON.stringify(toSend));\r\n  };\r\n\r\n  addSubStructure = (parent, name, fromHistoModule) => {\r\n    const { structures, roiLayers, selectedLayer, fileId } = this.state;\r\n\r\n    // findHighest id number\r\n    const newLayerId = structures.reduce((a, c) => Math.max(a, c.id), 0) + 1;\r\n\r\n    let subStructure = {\r\n      id: newLayerId,\r\n      dynamic: true,\r\n      parentId: parent.id,\r\n      label: name ? name : parent.label,\r\n      color: getUnusedColor(structures),\r\n      visible: true,\r\n      allToolNames: parent.allToolNames,\r\n      tools: parent.tools, // what tools should be used?\r\n      classFrequencies: {\r\n        class_0: 0,\r\n        class_1: 0,\r\n        class_2: 0,\r\n        class_3: 0,\r\n        class_4: 0,\r\n        class_5: 0,\r\n        class_6: 0,\r\n      },\r\n      avgClassFrequnecy: 0,\r\n      showSubtypes: false,\r\n      isSubtype: true,\r\n      parentColor: parent.color,\r\n      subtypeColor: getUnusedColor(structures),\r\n      isUnfolded: true,\r\n      subtypeLevel: parent.subtypeLevel + 1,\r\n      hasChild: false,\r\n      classificationSubtype: false,\r\n      defaultSelected: false,\r\n    };\r\n    // add substructure as last child (for now just in histo modules / for other modules check if this works too)\r\n    let numberChilds = 0;\r\n    if (fromHistoModule) {\r\n      numberChilds = this.getNumberOfChilds(structures[selectedLayer]);\r\n    }\r\n\r\n    structures.splice(selectedLayer + 1 + numberChilds, 0, subStructure);\r\n    const roiIndex = roiLayers[fileId].findIndex(\r\n      (c) => c.id === structures[selectedLayer].id\r\n    );\r\n\r\n    roiLayers[fileId].splice(roiIndex + 1, 0, {\r\n      id: newLayerId,\r\n      layer: {\r\n        regionRois: [],\r\n        inverted: false,\r\n      },\r\n      tree: new RBush(),\r\n    });\r\n    parent.addSubtypeText = \"\";\r\n    parent.hasChild = true;\r\n\r\n    this.sendStructures(structures);\r\n    this.setMountedState({ structures, roiLayers });\r\n  };\r\n\r\n  addSubType = (parent, name, fromHistoModule) => {\r\n    const { structures, roiLayers, selectedLayer, fileId } = this.state;\r\n\r\n    // findHighest id number\r\n    const newLayerId = structures.reduce((a, c) => Math.max(a, c.id), 0) + 1;\r\n\r\n    let subStructure = {\r\n      id: newLayerId,\r\n      dynamic: true,\r\n      parentId: parent.id,\r\n      label: name ? name : parent.label,\r\n      color: getUnusedColor(structures),\r\n      visible: true,\r\n      allToolNames: parent.allToolNames,\r\n      tools: parent.tools, // what tools should be used?\r\n      classFrequencies: {\r\n        class_0: 0,\r\n        class_1: 0,\r\n        class_2: 0,\r\n        class_3: 0,\r\n        class_4: 0,\r\n        class_5: 0,\r\n        class_6: 0,\r\n      },\r\n      avgClassFrequnecy: 0,\r\n      showSubtypes: false,\r\n      isSubtype: true,\r\n      isUnfolded: fromHistoModule ? false : true,\r\n      subtypeLevel: parent.subtypeLevel + 1,\r\n      hasChild: false,\r\n      classificationSubtype: true,\r\n      defaultSelected: false,\r\n    };\r\n    // add substructure as last child (for now just in histo modules / for other modules check if this works too)\r\n    let numberChilds = 0;\r\n    if (fromHistoModule) {\r\n      numberChilds = this.getNumberOfChilds(structures[selectedLayer]);\r\n      // for point counting module only 11 subtypes are possible because of template\r\n      if (numberChilds >= 10) {\r\n        window.showWarningSnackbar(\"Reached maximum amount of subtypes.\");\r\n        return;\r\n      }\r\n    }\r\n\r\n    structures.splice(selectedLayer + 1 + numberChilds, 0, subStructure);\r\n    const roiIndex = roiLayers[fileId].findIndex(\r\n      (c) => c.id === structures[selectedLayer].id\r\n    );\r\n\r\n    roiLayers[fileId].splice(roiIndex + 1 + numberChilds, 0, {\r\n      id: newLayerId,\r\n      layer: {\r\n        regionRois: [],\r\n        inverted: false,\r\n      },\r\n      tree: new RBush(),\r\n    });\r\n    parent.addSubtypeText = \"\";\r\n    parent.hasChild = true;\r\n    this.sendStructures(structures);\r\n    this.setMountedState({ structures, roiLayers });\r\n  };\r\n\r\n  findChilds = (subType) => {\r\n    const { structures } = this.state;\r\n\r\n    return structures.filter(\r\n      (element) =>\r\n        element.subtypeLevel === subType.subtypeLevel + 1 &&\r\n        element.parentId === subType.id\r\n    );\r\n  };\r\n\r\n  /**\r\n   * Removes a structure and corresponding regions from project model.\r\n   *\r\n   * @param {object} structure - Structure to remove.\r\n   * @returns {Int} The id of the next layer to be selected.\r\n   */\r\n  deleteStructure = (structure) => {\r\n    const { selectedLayer, fileId } = this.state;\r\n    let { structures, roiLayers } = this.state;\r\n\r\n    // Recursively delete all children.\r\n    if (structure.hasChild) {\r\n      let childs = this.findChilds(structure);\r\n      for (let i = 0; i < childs.length; i++) {\r\n        this.deleteStructure(childs[i]);\r\n      }\r\n    }\r\n\r\n    let toplevelParentId = null;\r\n    // In case of subtypes, find the next (sub-)structure\r\n    if (structure.classificationSubtype) {\r\n      toplevelParentId =\r\n        structures[getParentIndexLayer(structure, structures)].id;\r\n    }\r\n    // Otherwise, get the direct parent\r\n    else {\r\n      toplevelParentId = structure.parentId;\r\n    }\r\n\r\n    // Delete from structure\r\n    const structureIndex = structures.findIndex((c) => c.id === structure.id);\r\n    structures.splice(structureIndex, 1);\r\n\r\n    // Delete from ROIs.\r\n    const roiIndex = roiLayers[fileId].findIndex((c) => c.id === structure.id);\r\n    roiLayers[fileId].splice(roiIndex, 1);\r\n\r\n    // In case of subtype, delete ROIs from containing layer.\r\n    if (structure.isSubtype) {\r\n      // Get structure where ROIs are stored\r\n      let roiIdx = roiLayers[fileId].findIndex(\r\n        (struct) => struct.id === toplevelParentId\r\n      );\r\n\r\n      // Only keep ROIs not from the deleted subtype\r\n      let subtypesRemoved = roiLayers[fileId][roiIdx].tree\r\n        .all()\r\n        .filter((treeItem) => {\r\n          return (\r\n            treeItem.roi.isSubtype &&\r\n            treeItem.roi.subtypeName !== structure.label\r\n          );\r\n        });\r\n\r\n      // Overwrite previous ROIs\r\n      roiLayers[fileId][roiIdx].tree.data.children = subtypesRemoved;\r\n    }\r\n\r\n    // Update children status of parent.\r\n    let parentStruct = structures.find(\r\n      (struct) => struct.id === structure.parentId\r\n    );\r\n    // Only update if there is something to update\r\n    if (parentStruct) {\r\n      structures = updateStructures(parentStruct, structures);\r\n    }\r\n\r\n    // if last layer gets deleted make selectedLayer 0\r\n    let newSelectedLayer =\r\n      selectedLayer >= structures.length ? 0 : selectedLayer;\r\n\r\n    this.sendStructures(structures);\r\n    this.setMountedState({\r\n      structures,\r\n      roiLayers,\r\n      selectedLayer: newSelectedLayer,\r\n    });\r\n\r\n    return newSelectedLayer;\r\n  };\r\n\r\n  /**\r\n   * Duplicates a structure and corresponding parameters from project model.\r\n   *\r\n   * @param {object} structure - Structure to remove\r\n   */\r\n  duplicateStructure = (structure) => {\r\n    const { structures, roiLayers, fileId } = this.state;\r\n\r\n    // findHighest id number\r\n    const newLayerId =\r\n      structures.reduce((a, c) => (a ? Math.max(a, c.id) : c.id), 0) + 1;\r\n\r\n    // clone structure\r\n    const pureLabel = structure.label.split(\" - copy\")[0];\r\n    const copiesCount = structures.reduce(\r\n      (a, c) => (c.label.startsWith(pureLabel + \" - copy\") ? a + 1 : a),\r\n      0\r\n    );\r\n    let newStructure = Object.assign(JSON.parse(JSON.stringify(structure)), {\r\n      id: newLayerId,\r\n      label:\r\n        copiesCount > 0\r\n          ? pureLabel + \" - copy(\" + (copiesCount + 1) + \")\"\r\n          : pureLabel + \" - copy\",\r\n    });\r\n\r\n    let newRoilayer = {\r\n      id: newLayerId,\r\n      layer: {\r\n        regionRois: [],\r\n        inverted: false,\r\n      },\r\n      tree: new RBush(),\r\n    };\r\n\r\n    structures.push(newStructure);\r\n    roiLayers[fileId].push(newRoilayer);\r\n\r\n    this.duplicateChildren(structure, newStructure);\r\n\r\n    let newSelectedLayer = structures.findIndex((c) => c.id === newLayerId);\r\n\r\n    this.sendStructures(structures);\r\n    this.setMountedState({\r\n      structures,\r\n      roiLayers,\r\n      selectedLayer: newSelectedLayer,\r\n    });\r\n\r\n    return newSelectedLayer;\r\n  };\r\n\r\n  findChildren = (structure) => {\r\n    const { structures } = this.state;\r\n\r\n    return structures.filter(\r\n      (element) =>\r\n        element.subtypeLevel === structure.subtypeLevel + 1 &&\r\n        element.parentId === structure.id\r\n    );\r\n  };\r\n\r\n  duplicateChildren = (oldParent, newParent) => {\r\n    const { structures, roiLayers, fileId } = this.state;\r\n\r\n    for (let structure of this.findChildren(oldParent)) {\r\n      // findHighest id number\r\n      const newId =\r\n        structures.reduce((a, c) => (a ? Math.max(a, c.id) : c.id)) + 1;\r\n\r\n      // clone structure\r\n      let newStructure = Object.assign(JSON.parse(JSON.stringify(structure)), {\r\n        id: newId,\r\n        parentId: newParent.id,\r\n      });\r\n\r\n      let newRoilayer = {\r\n        id: newId,\r\n        layer: {\r\n          regionRois: [],\r\n          inverted: false,\r\n        },\r\n        tree: new RBush(),\r\n      };\r\n\r\n      structures.push(newStructure);\r\n      roiLayers[fileId].push(newRoilayer);\r\n\r\n      this.duplicateChildren(structure, newStructure);\r\n    }\r\n  };\r\n\r\n  /**\r\n   * Checks if a structure can be moved in a direction.\r\n   *\r\n   * @param {Object} selectedStructure - Structure to move\r\n   * @param {int} direction - 1 is up -1 is down\r\n   * @returns {bool} Move in this direction possible\r\n   */\r\n  canMoveStructure = (selectedStructure, direction) => {\r\n    const { structures } = this.state;\r\n    if (!selectedStructure.dynamic) return false;\r\n\r\n    let structuresSameLevel = {\r\n      structure: [],\r\n      index: [],\r\n    };\r\n\r\n    // get structures in same level of same parent\r\n    structuresSameLevel.structure = structures.filter(\r\n      (element) =>\r\n        element.parentId === selectedStructure.parentId &&\r\n        element.subtypeLevel === selectedStructure.subtypeLevel\r\n    );\r\n\r\n    // if parent is selected (e.g. Base Roi)\r\n    if (!selectedStructure.isSubtype) {\r\n      structuresSameLevel.structure = structures.filter(\r\n        (element) => element.subtypeLevel === selectedStructure.subtypeLevel\r\n      );\r\n    }\r\n    // get indices in all structures\r\n    structuresSameLevel.structure.forEach((element) =>\r\n      structuresSameLevel.index.push(\r\n        structures.findIndex((structure) => structure === element)\r\n      )\r\n    );\r\n\r\n    // index of selected layer of structures in same level\r\n    let index = structuresSameLevel.structure.findIndex(\r\n      (structure) => structure === selectedStructure\r\n    );\r\n\r\n    if (direction > 0) {\r\n      // if first object --> move up not possible.\r\n      // Also, moving above fixed, non-dynamic structures is forbidden.\r\n      if (index === 0 || !structuresSameLevel.structure[index - 1].dynamic) {\r\n        return false;\r\n      } else {\r\n        return true;\r\n      }\r\n    } else {\r\n      // if last object --> move down not possible\r\n      if (index === structuresSameLevel.structure.length - 1) {\r\n        return false;\r\n      } else {\r\n        return true;\r\n      }\r\n    }\r\n  };\r\n\r\n  /**\r\n   * Moves a structure up or down in structure list\r\n   *\r\n   * @param {Object} selectedStructure - Structure to move\r\n   * @param {int} direction - 1 is up -1 is down\r\n   */\r\n  moveStructure = (selectedStructure, direction) => {\r\n    const { structures, roiLayers } = this.state;\r\n\r\n    let structuresSameLevel = {\r\n      structure: [],\r\n      index: [],\r\n    };\r\n\r\n    // get structures in same level of same parent\r\n    structuresSameLevel.structure = structures.filter(\r\n      (element) =>\r\n        element.parentId === selectedStructure.parentId &&\r\n        element.subtypeLevel === selectedStructure.subtypeLevel\r\n    );\r\n\r\n    // if parent is selected (e.g. Base Roi)\r\n    if (!selectedStructure.isSubtype) {\r\n      structuresSameLevel.structure = structures.filter(\r\n        (element) => element.subtypeLevel === selectedStructure.subtypeLevel\r\n      );\r\n    }\r\n    // get indices in all structures\r\n    structuresSameLevel.structure.forEach((element) =>\r\n      structuresSameLevel.index.push(\r\n        structures.findIndex((structure) => structure === element)\r\n      )\r\n    );\r\n\r\n    // index of selected layer of structures in same level\r\n    let index = structuresSameLevel.structure.findIndex(\r\n      (structure) => structure === selectedStructure\r\n    );\r\n\r\n    if (direction > 0) {\r\n      // if first object --> move up not possible.\r\n      // Also, moving above fixed, non-dynamic structures is forbidden.\r\n      if (index === 0 || !structuresSameLevel.structure[index - 1].dynamic) {\r\n        window.showWarningSnackbar(\"Moving structure up not possible!\");\r\n        return;\r\n      }\r\n      // swap two neighbor structures with subtypes\r\n      // get all elements of selected structure\r\n      let strt = structuresSameLevel.index[index];\r\n      let ed = structuresSameLevel.index[index + 1];\r\n      // if structure to move up is last structure\r\n      if (!ed) {\r\n        // get index first structure in same level\r\n        let idxFirstSubtype = structures.findIndex(\r\n          (structure) => structure === structuresSameLevel.structure[0]\r\n        );\r\n        for (let i = idxFirstSubtype; i < structures.length; i++) {\r\n          if (structures[i].subtypeLevel < selectedStructure.subtypeLevel) {\r\n            ed = i;\r\n            break;\r\n          }\r\n        }\r\n      }\r\n      // Get all children of the selected structure.\r\n      let allElements_1 = structures.slice(strt, ed);\r\n\r\n      // delete elements to swap from structures\r\n      structures.splice(structuresSameLevel.index[index], allElements_1.length);\r\n\r\n      // put elements to right index in structures\r\n      let start = structures.findIndex(\r\n        (structure) => structure === structuresSameLevel.structure[index - 1]\r\n      );\r\n      for (let i = allElements_1.length - 1; i >= 0; i--) {\r\n        structures.splice(start, 0, allElements_1[i]);\r\n      }\r\n    } else {\r\n      // if last object --> move down not possible\r\n      if (index === structuresSameLevel.structure.length - 1) {\r\n        window.showWarningSnackbar(\"Moving structure down not possible!\");\r\n        return;\r\n      }\r\n\r\n      // swap two neighbor structures with subtypes\r\n      // get all elements of selected structure\r\n      let strt = structuresSameLevel.index[index];\r\n      let ed = structuresSameLevel.index[index + 1];\r\n      let allElements_1 = structures.slice(strt, ed);\r\n\r\n      // delete elements of first structure to swap\r\n      structures.splice(structuresSameLevel.index[index], allElements_1.length);\r\n\r\n      // put elements to right index in structures\r\n      let start = structures.findIndex(\r\n        (structure) => structure === structuresSameLevel.structure[index + 2]\r\n      );\r\n\r\n      // if structure to swap is last subtype\r\n      let lastStructure = false;\r\n      if (start === -1) {\r\n        // get index of structure to swap\r\n        let idxSwapStructure = structures.findIndex(\r\n          (structure) => structure === structuresSameLevel.structure[index + 1]\r\n        );\r\n        // if it is the last structure of all structures\r\n        // search next parent structure\r\n        let otherParent = false;\r\n        for (let i = idxSwapStructure; i < structures.length; i++) {\r\n          if (structures[i].subtypeLevel < selectedStructure.subtypeLevel) {\r\n            otherParent = true;\r\n          }\r\n        }\r\n        if (!otherParent) {\r\n          lastStructure = true;\r\n        } else {\r\n          // search next parent structure\r\n          for (let i = idxSwapStructure; i < structures.length; i++) {\r\n            if (structures[i].subtypeLevel < selectedStructure.subtypeLevel) {\r\n              start = i;\r\n              break;\r\n            }\r\n          }\r\n        }\r\n      }\r\n\r\n      if (!lastStructure) {\r\n        // put all elements to index after structure to swap\r\n        for (let i = allElements_1.length - 1; i >= 0; i--) {\r\n          structures.splice(start, 0, allElements_1[i]);\r\n        }\r\n      } else {\r\n        // if last structure push elements to the end\r\n        for (let i = 0; i < allElements_1.length; i++) {\r\n          structures.push(allElements_1[i]);\r\n        }\r\n      }\r\n    }\r\n\r\n    // Match roiLayer structure to new structure structure.\r\n    // Sorts the roilayers for each scene in project by having their ID-order\r\n    // match the order set by the structures.\r\n    for (let sceneGUID in roiLayers) {\r\n      roiLayers[sceneGUID].sort((roi_layer_a, roi_layer_b) => {\r\n        // Location of the first roi-Layer Id in strcutures\r\n        let index_of_roi_layer_a_in_structures = structures.findIndex(\r\n          (element) => {\r\n            return element.id === roi_layer_a.id;\r\n          }\r\n        );\r\n\r\n        // Location of the second roi-Layer Id in strcutures\r\n        let index_of_roi_layer_b_in_structures = structures.findIndex(\r\n          (element) => {\r\n            return element.id === roi_layer_b.id;\r\n          }\r\n        );\r\n\r\n        // Check if the first index comes before the second.\r\n        // Else, swap per sort algorithm.\r\n        return (\r\n          index_of_roi_layer_a_in_structures -\r\n          index_of_roi_layer_b_in_structures\r\n        );\r\n      });\r\n    }\r\n\r\n    let newSelectedLayer = structures.findIndex((c) => c === selectedStructure);\r\n\r\n    this.sendStructures(structures);\r\n    this.setMountedState({ structures, selectedLayer: newSelectedLayer });\r\n    return newSelectedLayer;\r\n  };\r\n\r\n  getProjectStringInfos = () => {\r\n    const project = this.state.project;\r\n    const file = project.files.find((file) => file.id === this.state.fileId);\r\n    const fileName = file.fileName.split(\".\").slice(0, -1).join(\".\");\r\n    let today = new Date();\r\n    let dd = String(today.getDate()).padStart(2, \"0\");\r\n    let mm = String(today.getMonth() + 1).padStart(2, \"0\"); //January is 0!\r\n    let yyyy = today.getFullYear();\r\n    today = yyyy + \"-\" + mm + \"-\" + dd;\r\n\r\n    // projekt_methode_filename_SceneNr_001.png\r\n    return {\r\n      name: project.name,\r\n      type: project.type,\r\n      fileName: fileName,\r\n      date: today,\r\n    };\r\n  };\r\n\r\n  setStateNow = (newState) => {\r\n    Object.assign(this.state, newState);\r\n    this.forceUpdate();\r\n  };\r\n\r\n  setAiModelRepository = (aiModelRepository) => {\r\n    this.aiModelRepository = aiModelRepository;\r\n  };\r\n\r\n  setAiStateObject = (aiStateObject) => {\r\n    this.aiStateObject = aiStateObject;\r\n  };\r\n\r\n  getUserData = () => {\r\n    return this.usersData;\r\n  };\r\n\r\n  setPersistentStorage = (persistentStorage) => {\r\n    this.persistentStorage = persistentStorage;\r\n  };\r\n\r\n  render() {\r\n    return (\r\n      <ProjectContext.Provider\r\n        value={{\r\n          viewer: this.viewer,\r\n          getUsersData: this.getUserData,\r\n          setPersistentStorage: this.setPersistentStorage,\r\n          init: this.init,\r\n          initForeignHistory: this.initForeignHistory,\r\n          initProject: this.initProject,\r\n          setState: (e, callback) => this.setMountedState(e, callback),\r\n          forceUpdate: () => this.forceUpdate(),\r\n          getRegionById: this.getRegionById,\r\n          setChangingFile: this.setChangingFile,\r\n          setActiveTab: this.setActiveTab,\r\n          getActiveTab: this.getActiveTab,\r\n          /* Handle Structures */\r\n          importStructures: this.importStructures,\r\n          addStructure: this.addStructure,\r\n          addSubStructure: this.addSubStructure,\r\n          addSubType: this.addSubType,\r\n          sendStructures: this.sendStructures,\r\n          deleteStructure: this.deleteStructure,\r\n          moveStructure: this.moveStructure,\r\n          canMoveStructure: this.canMoveStructure,\r\n          duplicateStructure: this.duplicateStructure,\r\n          setStateNow: this.setStateNow,\r\n          getProjectStringInfos: this.getProjectStringInfos,\r\n          setAiModelRepository: this.setAiModelRepository,\r\n          setAiStateObject: this.setAiStateObject,\r\n          /* State */\r\n          ...this.state,\r\n          fileRoiLayers:\r\n            this.state.roiLayers && this.state.roiLayers[this.state.fileId],\r\n        }}\r\n      >\r\n        {this.props.children}\r\n      </ProjectContext.Provider>\r\n    );\r\n  }\r\n}\r\n\r\nProjectProvider.propTypes = {\r\n  children: PropTypes.element.isRequired,\r\n};\r\n\r\nexport default ProjectProvider;\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport { RegionROI } from \"../utils/ROI\";\r\n\r\nimport { withPersistentStorage } from \"./PersistentStorageContext\";\r\nimport { withProject } from \"./ProjectContext\";\r\n\r\nimport { getParentIndexLayer } from \"../utils/StructuresUtils\";\r\n\r\nconst ProjectHistoryContext = React.createContext();\r\n\r\nexport const withProjectHistory = (Component) => {\r\n  const WrappedComponent = (props) => (\r\n    <ProjectHistoryContext.Consumer>\r\n      {(context) => <Component {...props} projectHistory={context} />}\r\n    </ProjectHistoryContext.Consumer>\r\n  );\r\n\r\n  WrappedComponent.displayName = `withProjectHistory(${\r\n    Component.displayName || Component.name || \"Component\"\r\n  })`;\r\n\r\n  return WrappedComponent;\r\n};\r\n\r\n// this is the main component, it has to be added at the root of the app.\r\n// all components that use withProject(...) will have access to it via this.props.Project...\r\n// There is not limit for steps, since it should also be used to save new Annotations to the project\r\nclass ProjectHistoryProvider extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n    this.state = {\r\n      canUndo: false,\r\n      canRedo: false,\r\n      sizeLimitReached: false,\r\n    };\r\n    this.socket = null;\r\n    this.shownSaveHintNum = 0;\r\n    window.projectHistory = this;\r\n  }\r\n\r\n  /**\r\n   * Initializes the Project provider and passes a viewer component\r\n   *\r\n   * @param {object} viewer - Viewer Component\r\n   */\r\n  init = (viewer) => {\r\n    this.viewer = viewer;\r\n    this.collecting = false;\r\n    this.collection = [];\r\n    this.past = [];\r\n    this.future = [];\r\n  };\r\n\r\n  send = (stepType, items) => {\r\n    const toSend = {\r\n      state: \"anno\",\r\n      stepType,\r\n    };\r\n    if (stepType === \"pastHistory\") {\r\n      toSend.items = items.map((item) => {\r\n        return item.map((itm) => {\r\n          return {\r\n            add: itm.add,\r\n            id: itm.id,\r\n            roi: itm.roi.regions,\r\n          };\r\n        });\r\n      });\r\n    } else if (typeof items !== \"undefined\") {\r\n      toSend.items = items.map((item) => {\r\n        return {\r\n          add: item.add,\r\n          id: item.id,\r\n          roi: item.roi.regions,\r\n        };\r\n      });\r\n    }\r\n\r\n    // this.socket.send(JSON.stringify(toSend));\r\n  };\r\n\r\n  receive = (input) => {\r\n    const { structures } = this.viewer.props.projectContext;\r\n    if (input.state === \"init\" && this.past) {\r\n      this.send(\"pastHistory\", this.past);\r\n      return;\r\n    }\r\n    if (input.stepType === \"pastHistory\" && input.items) {\r\n      for (const inputItems of input.items) {\r\n        const items = inputItems.map((item) => {\r\n          const roiStructure = structures.find((str) => str.id === item.id);\r\n          return {\r\n            add: item.add,\r\n            id: item.id,\r\n            roi: new RegionROI({\r\n              regions: [item.roi],\r\n              structureId: item.id,\r\n              color: roiStructure.color,\r\n              isSubtype: roiStructure.classificationSubtype,\r\n              subtypeName: roiStructure.label,\r\n            }),\r\n          };\r\n        });\r\n        this.past.push(items);\r\n        this.processItem(items, \"redo\");\r\n      }\r\n      this.future = [];\r\n      this.updateState();\r\n      return;\r\n    }\r\n    if (input.items) {\r\n      const items = input.items.map((item) => {\r\n        const roiStructure = structures.find((str) => str.id === item.id);\r\n        return {\r\n          add: item.add,\r\n          id: item.id,\r\n          roi: new RegionROI({\r\n            regions: [item.roi],\r\n            structureId: item.id,\r\n            color: roiStructure.color,\r\n            isSubtype: roiStructure.classificationSubtype,\r\n            subtypeName: roiStructure.label,\r\n          }),\r\n        };\r\n      });\r\n      if (input.stepType === \"redo\") {\r\n        this.past.push(items);\r\n        this.future = [];\r\n      } else if (input.stepType === \"undo\") {\r\n        this.future.push(items);\r\n      }\r\n      this.updateState();\r\n      this.processItem(items, input.stepType);\r\n    } else {\r\n      if (input.stepType === \"undo\") {\r\n        this.undoItem();\r\n      } else if (input.stepType === \"redo\") {\r\n        this.redoItem();\r\n      }\r\n    }\r\n  };\r\n\r\n  add = (items) => {\r\n    if (items.length > 0) {\r\n      items = items.map((item) => {\r\n        item.roi = item.roi.copy();\r\n        item.id = item.roi.structureId;\r\n        return item;\r\n      });\r\n      if (this.collecting) {\r\n        this.collection.push(items);\r\n      } else {\r\n        this.send(\"redo\", items);\r\n        this.past.push(items);\r\n        this.future = [];\r\n      }\r\n      this.updateState();\r\n      if (Math.floor(this.past.length / 100) > this.shownSaveHintNum) {\r\n        this.shownSaveHintNum++;\r\n        window.showActionSnackbar(\r\n          \"Would you like to save your \" + this.past.length + \" changes?\",\r\n          this.props.projectContext.viewer.onSaveClick,\r\n          \"Save now\",\r\n          \"Dismiss\"\r\n        );\r\n      }\r\n    }\r\n  };\r\n\r\n  //intern function, adds and removes polys for one item (history step)\r\n  processItem = (items, stepType) => {\r\n    if (items.length === 0) return;\r\n\r\n    const { fileId, structures } = this.viewer.props.projectContext;\r\n    let roiLayers = this.viewer.props.projectContext.roiLayers[fileId];\r\n\r\n    for (let action of items) {\r\n      let parentLayerIdx = -1;\r\n      try {\r\n        parentLayerIdx = getParentIndexLayer(\r\n          structures.find((str) => str.id === action.id),\r\n          structures\r\n        );\r\n      } catch (ex) {\r\n        console.log(stepType, \"error:\", ex);\r\n        window.showErrorSnackbar(\r\n          \"Something went wrong, \" + stepType + \" ignored!\"\r\n        );\r\n        return;\r\n      }\r\n      const parentRoiLayer = roiLayers[parentLayerIdx];\r\n\r\n      if (\r\n        (stepType === \"redo\" && action.add) ||\r\n        (stepType === \"undo\" && !action.add)\r\n      ) {\r\n        const overlapItems = parentRoiLayer.tree.search(action.roi.treeItem);\r\n        let isSame = false;\r\n        for (const treeItem of overlapItems) {\r\n          if (treeItem.roi.sameBoundsWith(action.roi)) {\r\n            isSame = true;\r\n            break;\r\n          }\r\n        }\r\n        if (!isSame) {\r\n          parentRoiLayer.tree.insert(action.roi.treeItem);\r\n        }\r\n      } else {\r\n        parentRoiLayer.tree.remove(action.roi.treeItem, (a, b) => {\r\n          return a.roi.sameBoundsWith(b.roi);\r\n        });\r\n      }\r\n      parentRoiLayer.layer.regionRois = parentRoiLayer.tree\r\n        .all()\r\n        .map((treeItem) => treeItem.roi);\r\n    }\r\n  };\r\n\r\n  undoItem = () => {\r\n    if (this.past.length > 0) {\r\n      let item = this.past.pop();\r\n      this.processItem(item, \"undo\");\r\n      this.future.push(item);\r\n      this.updateState();\r\n      return true;\r\n    }\r\n    return false;\r\n  };\r\n\r\n  undo = () => {\r\n    const actionDone = this.undoItem();\r\n    if (actionDone) {\r\n      this.send(\"undo\");\r\n    }\r\n  };\r\n\r\n  redoItem = () => {\r\n    if (this.future.length > 0) {\r\n      let item = this.future.pop();\r\n      this.processItem(item, \"redo\");\r\n      this.past.push(item);\r\n      this.updateState();\r\n      return true;\r\n    }\r\n    return false;\r\n  };\r\n\r\n  redo = () => {\r\n    const actionDone = this.redoItem();\r\n    if (actionDone) {\r\n      this.send(\"redo\");\r\n    }\r\n  };\r\n\r\n  clear = () => {\r\n    this.past = [];\r\n    this.future = [];\r\n    this.shownSaveHintNum = 0;\r\n    this.updateState();\r\n  };\r\n\r\n  updateState = () => {\r\n    this.setState({\r\n      canUndo: this.past.length > 0,\r\n      canRedo: this.future.length > 0,\r\n    });\r\n  };\r\n\r\n  getHistoryLength = () => {\r\n    return this.past.length;\r\n  };\r\n\r\n  mergePastItems(n) {\r\n    if (n > 1) {\r\n      let newItem = [];\r\n      for (let i = 0; i < n; i++) {\r\n        let item = this.past.pop();\r\n        newItem.push(...item);\r\n      }\r\n      this.past.push(newItem);\r\n      this.future = [];\r\n    }\r\n  }\r\n\r\n  startCollection() {\r\n    this.collecting = true;\r\n  }\r\n\r\n  addCollection() {\r\n    this.collecting = false;\r\n    let mergedItems = [];\r\n    while (this.collection.length > 0) {\r\n      const items = this.collection.pop();\r\n      mergedItems.push(...items);\r\n    }\r\n    this.collection = [];\r\n    this.add(mergedItems);\r\n  }\r\n\r\n  render() {\r\n    return (\r\n      <ProjectHistoryContext.Provider\r\n        value={{\r\n          init: this.init,\r\n          collecting: this.collecting,\r\n          collection: this.collection,\r\n          startCollection: this.startCollection,\r\n          addCollection: this.addCollection,\r\n          add: this.add,\r\n          undo: this.undo,\r\n          redo: this.redo,\r\n          clear: this.clear,\r\n          getHistoryLength: this.getHistoryLength,\r\n          mergePastItems: this.mergePastItems,\r\n          ...this.state,\r\n        }}\r\n      >\r\n        {this.props.children}\r\n      </ProjectHistoryContext.Provider>\r\n    );\r\n  }\r\n}\r\n\r\nProjectHistoryProvider.propTypes = {\r\n  historyDepth: PropTypes.number.isRequired,\r\n  projectContext: PropTypes.object,\r\n  children: PropTypes.element.isRequired,\r\n};\r\n\r\nexport default withPersistentStorage(withProject(ProjectHistoryProvider));\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport { Typography } from \"@mui/material\";\r\n\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n\r\nconst styles = () => ({\r\n  root: {\r\n    position: \"relative\",\r\n    height: \"100%\",\r\n    width: \"100%\",\r\n    textAlign: \"center\",\r\n  },\r\n  view3d: { position: \"relative\", width: \"100%\", height: 456, zIndex: 100000 },\r\n  hiddenView3d: {\r\n    position: \"absolute\",\r\n    width: \"100%\",\r\n    height: 456,\r\n    visibility: \"hidden\",\r\n  },\r\n});\r\n\r\nclass Preview3d extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n    this.state = {\r\n      shownProteinId: \"\",\r\n    };\r\n  }\r\n  addScript = (src) => {\r\n    let script = document.getElementById(src);\r\n    if (script === null) {\r\n      script = document.createElement(\"script\");\r\n      script.id = src;\r\n      script.src = src;\r\n      script.async = false;\r\n      document.head.appendChild(script);\r\n    }\r\n\r\n    return script;\r\n  };\r\n  addStyle = (href) => {\r\n    let link = document.getElementById(href);\r\n    if (link === null) {\r\n      link = document.createElement(\"link\");\r\n      link.id = href;\r\n      link.href = href;\r\n      link.rel = \"stylesheet\";\r\n      document.head.appendChild(link);\r\n    }\r\n  };\r\n  initPeptide = () => {};\r\n\r\n  updateProtein = () => {\r\n    if (this.props.selectedRow) {\r\n      if (this.state.shownProteinId !== this.props.selectedRow.proteinId) {\r\n        this.getUniprotData(this.props.selectedRow, (found) => {\r\n          console.log(\"result found:\", found);\r\n        });\r\n      }\r\n    }\r\n  };\r\n\r\n  componentDidUpdate = () => {\r\n    this.updateProtein();\r\n  };\r\n\r\n  getUniprotData = (selectedRow, callback) => {\r\n    let proteinId = selectedRow.proteinId;\r\n    let locationMin = selectedRow.location;\r\n    let locationMax = selectedRow.location + selectedRow.name.length;\r\n    let viewer3D = this;\r\n    var xmlhttp = new XMLHttpRequest();\r\n    xmlhttp.onreadystatechange = function () {\r\n      if (this.readyState === 4 && this.status === 200) {\r\n        //myFunction(this);\r\n        let xmlDoc = this.responseXML;\r\n        //let x = xmlDoc.getElementsByTagName(\"dbReference\");\r\n        for (let dbReference of xmlDoc.getElementsByTagName(\"dbReference\")) {\r\n          if (dbReference.getAttribute(\"type\") === \"PDB\") {\r\n            let viewerId = dbReference.getAttribute(\"id\");\r\n            for (let property of dbReference.childNodes) {\r\n              if (\r\n                property.getAttribute &&\r\n                property.getAttribute(\"type\") === \"chains\"\r\n              ) {\r\n                let chainsArr = property.getAttribute(\"value\").split(\", \");\r\n                for (let value of chainsArr) {\r\n                  let valueArr = value.split(\"=\");\r\n                  let chain = valueArr[0];\r\n                  let positionsArr = valueArr[1].split(\"-\");\r\n                  let minPos = positionsArr[0];\r\n                  let maxPos = positionsArr[1];\r\n                  if (locationMin > minPos && locationMax < maxPos) {\r\n                    viewer3D.openMolecule(\r\n                      proteinId,\r\n                      viewerId,\r\n                      chain,\r\n                      locationMin,\r\n                      locationMax\r\n                    );\r\n                    callback(true);\r\n                    return;\r\n                  }\r\n                }\r\n              }\r\n            }\r\n          }\r\n        }\r\n      }\r\n      callback(false);\r\n    };\r\n    xmlhttp.open(\r\n      \"GET\",\r\n      \"https://www.uniprot.org/uniprot/\" + proteinId + \".xml\",\r\n      true\r\n    );\r\n    xmlhttp.send();\r\n  };\r\n\r\n  getLiteMolScope = () => {\r\n    if (typeof this.liteMolScope === \"undefined\") {\r\n      let element = document.getElementById(\"litemol_1cbs\");\r\n      this.liteMolScope = window.angular.element(element).isolateScope();\r\n    }\r\n    return this.liteMolScope;\r\n  };\r\n\r\n  openMolecule = (proteinId, moleculeId, chain, locationMin, locationMax) => {\r\n    this.setState({ shownProteinId: proteinId });\r\n    const liteMolScope = this.getLiteMolScope();\r\n    liteMolScope.LiteMolComponent.destroyPlugin();\r\n    liteMolScope.LiteMolComponent.createPlugin();\r\n    liteMolScope.LiteMolComponent.moleculeId = moleculeId;\r\n    liteMolScope.LiteMolComponent.loadMolecule();\r\n    //this.liteMolScope.LiteMolComponent.colorChains(\"A\", [255, 0, 0]);\r\n    setTimeout(() => {\r\n      let sequenceAnnotation =\r\n        liteMolScope.LiteMolComponent.loadSequenceAnnotation();\r\n      console.log(\"sequenceAnnotation:\", sequenceAnnotation);\r\n      liteMolScope.LiteMolComponent.colorChains(\"#nothing#\", [0, 255, 0]);\r\n      console.log(\"chain:\", chain);\r\n      chain =\r\n        chain.split(\"/\").length > 1 ? chain.split(\"/\")[1] : chain.split(\"/\")[0];\r\n      let selectionDetails = {\r\n        entity_id: \"1\",\r\n        struct_asym_id: chain,\r\n        start_residue_number: locationMin,\r\n        end_residue_number: locationMax,\r\n      };\r\n      liteMolScope.LiteMolComponent.highlightOn(selectionDetails);\r\n    }, 1000);\r\n  };\r\n\r\n  initLiteMolScope = () => {\r\n    console.log(\"initLiteMolScope()\");\r\n    //Bootstrapping / Installing the library\r\n    window.angular.element(document).ready(() => {\r\n      this.litemolelem = document.getElementById(\"litemol_1cbs\");\r\n      window.angular.bootstrap(document, [\"pdb.component.library\"]);\r\n    });\r\n\r\n    //bind to the component scope on window.onload\r\n    window.onload = () => {\r\n      window.liteMolElement = document.getElementById(\"litemol_1cbs\");\r\n      window.liteMolScope = window.angular\r\n        .element(window.liteMolElement)\r\n        .isolateScope();\r\n    };\r\n  };\r\n\r\n  componentDidMount = () => {\r\n    console.log(\"Preview3d componentDidMOunt()\");\r\n    this.addStyle(\r\n      \"//www.ebi.ac.uk/pdbe/pdb-component-library/v1.0/css/pdb.component.library.min-1.0.0.css\"\r\n    );\r\n    const angularScript = this.addScript(\r\n      \"https://www.ebi.ac.uk/pdbe/pdb-component-library/libs/angular.1.4.7.min.js\"\r\n    );\r\n    this.addScript(\r\n      \"https://www.ebi.ac.uk/pdbe/pdb-component-library/libs/d3.min.js\"\r\n    );\r\n    this.addScript(\r\n      \"https://www.ebi.ac.uk/pdbe/pdb-component-library/v1.0/js/pdb.component.library.min-1.0.0.js\"\r\n    );\r\n    if (typeof window.angular === \"undefined\") {\r\n      angularScript.onload = () => {\r\n        this.initLiteMolScope();\r\n      };\r\n    } else {\r\n      let element = document.getElementById(\"litemol_1cbs\");\r\n      element.replaceWith(window.liteMolElement);\r\n      window.liteMolScope = window.angular.element(element).isolateScope();\r\n    }\r\n    this.updateProtein();\r\n  };\r\n  render() {\r\n    const { classes } = this.props;\r\n\r\n    return (\r\n      <div className={classes.root}>\r\n        {this.props.selectedRow ? (\r\n          <Typography variant=\"h6\">\r\n            Protein ID: {this.props.selectedRow.proteinId}\r\n          </Typography>\r\n        ) : (\r\n          <Typography variant=\"body1\">\r\n            Please select a protein from the results to view its properties\r\n            here.\r\n          </Typography>\r\n        )}\r\n        <div\r\n          className={\r\n            this.props.selectedRow &&\r\n            this.props.selectedRow.proteinId === this.state.shownProteinId\r\n              ? classes.view3d\r\n              : classes.hiddenView3d\r\n          }\r\n        >\r\n          <pdb-lite-mol id=\"litemol_1cbs\" hide-controls=\"false\"></pdb-lite-mol>\r\n        </div>\r\n        {this.props.selectedRow && (\r\n          <div className={classes.centeredRow}>\r\n            <a\r\n              href={\r\n                \"https://www.uniprot.org/uniprot/\" +\r\n                this.props.selectedRow.proteinId\r\n              }\r\n              target=\"_blank\"\r\n              rel=\"noopener noreferrer\"\r\n            >\r\n              https://www.uniprot.org/uniprot/\r\n              {this.props.selectedRow.proteinId}\r\n            </a>\r\n          </div>\r\n        )}\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nPreview3d.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  selectedRow: PropTypes.object,\r\n};\r\n\r\nexport default withStyles(styles)(Preview3d);\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport withStyles from '@mui/styles/withStyles';\r\nimport { TextField, Button, Typography, Tabs, Tab } from \"@mui/material\";\r\nimport { FontAwesomeIcon } from \"@fortawesome/react-fontawesome\";\r\nimport { faCog, faDna } from \"@fortawesome/free-solid-svg-icons\";\r\n\r\nimport ProteomSettings from \"./ProteomSettings\";\r\nimport Preview3d from \"../components/Preview3d\";\r\n\r\nconst styles = {\r\n  paddingContainer: {\r\n    padding: 10,\r\n  },\r\n  formItem: {\r\n    width: \"100%\",\r\n    marginBottom: 20,\r\n  },\r\n  numberInput: {\r\n    width: 50,\r\n    marginRight: 10,\r\n  },\r\n  applyButton: {\r\n    width: \"100%\",\r\n  },\r\n  tab: {\r\n    minWidth: 395 / 3,\r\n    minHeight: 44,\r\n    height: 44,\r\n    paddingBottom: 0,\r\n    paddingTop: 0,\r\n    \"& *\": {\r\n      display: \"inline-block\",\r\n      fontSize: \"16px\",\r\n      lineHeight: \"16px\",\r\n    },\r\n    \"& svg\": {\r\n      marginRight: \"5px\",\r\n      position: \"relative\",\r\n      top: \"4px\",\r\n    },\r\n  },\r\n};\r\n\r\nclass ProteomeSideBar extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n    this.state = {\r\n      activeTab: 0,\r\n    };\r\n\r\n    window.forceSidebarUpdate = this.forceSidebarUpdate;\r\n  }\r\n\r\n  // // file handling, if upload need later on\r\n  // componentDidMount = () => {\r\n  //   this.fileInputButton = document.getElementById(\"proteomFileInput\");\r\n  //   this.fileInputButton.addEventListener(\"change\", this.readSingleFile, false);\r\n  // };\r\n\r\n  // readSingleFile(e) {\r\n  //   let file = e.target.files[0];\r\n  //   if (!file) {\r\n  //     return;\r\n  //   }\r\n  //   let reader = new FileReader();\r\n  //   reader.onload = function (e) {\r\n  //     let contents = e.target.result;\r\n  //     //displayContents(contents);\r\n  //     let lines = contents.split(\"\\n\");\r\n  //     let initIdx = 0;\r\n  //     //important columns:\r\n  //     // ID => Protein ID (more)\r\n  //     //\r\n  //     for (let i = 0; i < lines.length; i++) {\r\n  //       lines[i] = lines[i].split(\"\\t\");\r\n  //       if (initIdx === 0 && lines[i].length > 10) {\r\n  //         initIdx = i;\r\n  //       }\r\n  //     }\r\n  //     let lineTable = lines.splice(initIdx, lines.length);\r\n  //     console.log(\"lineTable:\", initIdx, lineTable.length, lineTable);\r\n  //   };\r\n  //   reader.readAsText(file);\r\n  // }\r\n\r\n  // openProteomFile = () => {\r\n  //   this.fileInputButton.click();\r\n  // };\r\n\r\n  handleTabChange = (event, value) => {\r\n    this.setState({ activeTab: value });\r\n  };\r\n  render() {\r\n    const { classes, project } = this.props;\r\n    const { activeTab } = this.state;\r\n\r\n    return (\r\n      <div>\r\n        <Tabs\r\n          //className={`${classes.tabsContainer} ${classes.flexRowContentHeight}`}\r\n          value={activeTab}\r\n          onChange={this.handleTabChange}\r\n          variant=\"fullWidth\"\r\n          indicatorColor=\"primary\"\r\n          textColor=\"primary\"\r\n        >\r\n          <Tab\r\n            //id=\"viewTabBtn\"\r\n            className={classes.tab}\r\n            icon={<FontAwesomeIcon icon={faDna} size=\"lg\" />}\r\n            label=\"View\"\r\n          />\r\n          <Tab\r\n            //id=\"viewTabBtn\"\r\n            className={classes.tab}\r\n            icon={<FontAwesomeIcon icon={faCog} size=\"lg\" />}\r\n            label=\"Properties\"\r\n          />\r\n        </Tabs>\r\n        {this.state.activeTab === 0 && (\r\n          <Preview3d selectedRow={this.props.selectedRow} />\r\n        )}\r\n\r\n        {/* <input\r\n          // onClick={console.log(\"test\")}\r\n          style={{ display: \"none\" }}\r\n          type=\"file\"\r\n          id=\"proteomFileInput\"\r\n        /> */}\r\n        {this.state.activeTab === 1 && (\r\n          <div className={classes.paddingContainer}>\r\n            <Typography className={classes.formItem} variant=\"h6\">\r\n              Analysis Properties\r\n            </Typography>\r\n\r\n            {project && (\r\n              <React.Fragment>\r\n                <TextField\r\n                  name=\"Textfield\"\r\n                  label=\"Title\"\r\n                  variant=\"outlined\"\r\n                  value={project.name ? project.name : \"\"}\r\n                  onChange={(e) => this.props.changeProjectName(e.target.value)}\r\n                  className={classes.formItem}\r\n                />\r\n                {project.files.length > 0 && (\r\n                  <TextField\r\n                  name=\"Textfield\"\r\n                    label=\"File\"\r\n                    variant=\"outlined\"\r\n                    value={project.files[0].fileName}\r\n                    className={classes.formItem}\r\n                    InputProps={{\r\n                      readOnly: true,\r\n                    }}\r\n                    //onClick={this.openProteomFile}\r\n                  />\r\n                )}\r\n\r\n                <ProteomSettings\r\n                  metaData={project.metaData}\r\n                  onChangeMetaData={this.props.onChangeMetaData}\r\n                  projectProperties={\r\n                    project.viewerConfig.project.projectProperties\r\n                  }\r\n                  projectStringProperties={\r\n                    project.viewerConfig.project.projectStringProperties\r\n                  }\r\n                />\r\n              </React.Fragment>\r\n            )}\r\n\r\n            <Button\r\n              variant=\"contained\"\r\n              color=\"primary\"\r\n              className={classes.applyButton}\r\n              onClick={this.props.saveAndRunProject}\r\n            >\r\n              Apply\r\n            </Button>\r\n          </div>\r\n        )}\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nProteomeSideBar.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  project: PropTypes.object,\r\n  selectedRow: PropTypes.object,\r\n  onChangeMetaData: PropTypes.func,\r\n  changeProjectName: PropTypes.func,\r\n  saveAndRunProject: PropTypes.func,\r\n};\r\n\r\nexport default withStyles(styles)(ProteomeSideBar);\r\n","import React from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\nimport Table from \"@mui/material/Table\";\r\nimport TableBody from \"@mui/material/TableBody\";\r\nimport TableCell from \"@mui/material/TableCell\";\r\nimport TableHead from \"@mui/material/TableHead\";\r\nimport TableRow from \"@mui/material/TableRow\";\r\nimport TableSortLabel from \"@mui/material/TableSortLabel\";\r\nimport Paper from \"@mui/material/Paper\";\r\nimport Tooltip from \"@mui/material/Tooltip\";\r\nimport { v4 as uuidv4 } from \"uuid\";\r\n\r\nimport { ArrowDropDown, ArrowDropUp } from \"@mui/icons-material\";\r\n\r\nconst rows = [\r\n  {\r\n    id: \"actions\",\r\n    numeric: false,\r\n    label: \"\",\r\n  },\r\n  {\r\n    id: \"name\",\r\n    numeric: false,\r\n    label: \"Epitope\",\r\n  },\r\n  { id: \"score\", numeric: true, label: \"Score\" },\r\n  {\r\n    id: \"proteinId\",\r\n    numeric: true,\r\n    label: \"Protein ID\",\r\n  },\r\n  {\r\n    id: \"ProteinName\",\r\n    numeric: true,\r\n    label: \"Protein name\",\r\n  },\r\n  { id: \"location\", numeric: true, label: \"Location\" },\r\n  { id: \"epitope\", numeric: true, label: \"Epitope\" },\r\n];\r\n\r\nfunction desc(a, b, orderBy) {\r\n  if (b[orderBy] < a[orderBy]) {\r\n    return -1;\r\n  }\r\n  if (b[orderBy] > a[orderBy]) {\r\n    return 1;\r\n  }\r\n  return 0;\r\n}\r\n\r\nfunction stableSort(array, cmp) {\r\n  const stabilizedThis = array.map((el, index) => [el, index]);\r\n  stabilizedThis.sort((a, b) => {\r\n    const order = cmp(a[0], b[0]);\r\n    if (order !== 0) return order;\r\n    return a[1] - b[1];\r\n  });\r\n  return stabilizedThis.map((el) => el[0]);\r\n}\r\n\r\nfunction getSorting(order, orderBy) {\r\n  return order === \"desc\"\r\n    ? (a, b) => desc(a, b, orderBy)\r\n    : (a, b) => -desc(a, b, orderBy);\r\n}\r\n\r\nclass ProteomResultsHead extends React.Component {\r\n  createSortHandler = (property) => (event) => {\r\n    this.props.onRequestSort(event, property);\r\n  };\r\n\r\n  render() {\r\n    const { order, orderBy } = this.props;\r\n\r\n    return (\r\n      <TableHead>\r\n        <TableRow>\r\n          {rows.map(\r\n            (row, idx) => (\r\n              <TableCell\r\n                key={uuidv4()}\r\n                align={row.numeric ? \"right\" : \"left\"}\r\n                padding=\"normal\"\r\n                sortDirection={orderBy === row.id ? order : false}\r\n              >\r\n                {idx > 0 && idx < 3 ? (\r\n                  <Tooltip\r\n                    disableInteractive\r\n                    title=\"Sort\"\r\n                    placement={row.numeric ? \"bottom-end\" : \"bottom-start\"}\r\n                    enterDelay={300}\r\n                  >\r\n                    <TableSortLabel\r\n                      active={orderBy === row.id}\r\n                      direction={order}\r\n                      onClick={this.createSortHandler(row.id)}\r\n                    >\r\n                      {row.label}\r\n                    </TableSortLabel>\r\n                  </Tooltip>\r\n                ) : (\r\n                  <React.Fragment>{row.label}</React.Fragment>\r\n                )}\r\n              </TableCell>\r\n            ),\r\n            this\r\n          )}\r\n        </TableRow>\r\n      </TableHead>\r\n    );\r\n  }\r\n}\r\n\r\nProteomResultsHead.propTypes = {\r\n  onRequestSort: PropTypes.func.isRequired,\r\n  order: PropTypes.string.isRequired,\r\n  orderBy: PropTypes.string.isRequired,\r\n  rowCount: PropTypes.number.isRequired,\r\n};\r\n\r\nconst styles = () => ({\r\n  root: {\r\n    width: \"100%\",\r\n  },\r\n  table: {\r\n    minWidth: 800,\r\n  },\r\n  tableWrapper: {\r\n    overflowX: \"auto\",\r\n  },\r\n});\r\n\r\nclass ProteomResults extends React.Component {\r\n  constructor(props) {\r\n    super(props);\r\n\r\n    this.counter = 0;\r\n    this.epitopes = {};\r\n    let allRows = [];\r\n\r\n    this.state = {\r\n      order: \"asc\",\r\n      orderBy: \"calories\",\r\n      selected: [],\r\n      data: allRows,\r\n      epitopes: this.epitopes,\r\n    };\r\n  }\r\n\r\n  componentDidUpdate = (prevProps) => {\r\n    if (\r\n      Object.keys(prevProps.annotations).length === 0 &&\r\n      Object.keys(this.props.annotations).length > 0\r\n    ) {\r\n      let allRows = [];\r\n      for (const [key, value] of Object.entries(this.props.annotations)) {\r\n        let name = key;\r\n        //console.log(\"row\", key);\r\n        let score = value.score;\r\n        let proteinId = \"\";\r\n        let proteinName = \"\";\r\n        let location = \"\";\r\n        let epitope = \"C\";\r\n        for (let row of value.proteins) {\r\n          proteinId = row.id;\r\n          proteinName = row.name;\r\n          location = row.content.indexOf(key, 0);\r\n          allRows.push(\r\n            this.createRow(\r\n              name,\r\n              score,\r\n              proteinId,\r\n              proteinName,\r\n              location,\r\n              epitope\r\n            )\r\n          );\r\n        }\r\n      }\r\n      this.setState({ data: allRows });\r\n    }\r\n  };\r\n\r\n  createRow(name, score, proteinId, proteinName, location, epitope) {\r\n    this.counter += 1;\r\n    if (typeof this.epitopes[name] === \"undefined\")\r\n      this.epitopes[name] = { score: score, collapsed: true };\r\n    return {\r\n      id: this.counter,\r\n      name,\r\n      score,\r\n      proteinId,\r\n      proteinName,\r\n      location,\r\n      epitope,\r\n    };\r\n  }\r\n\r\n  handleRequestSort = (event, property) => {\r\n    const orderBy = property;\r\n    let order = \"desc\";\r\n\r\n    if (this.state.orderBy === property && this.state.order === \"desc\") {\r\n      order = \"asc\";\r\n    }\r\n\r\n    this.setState({ order, orderBy });\r\n  };\r\n\r\n  handleClick = (row) => {\r\n    this.setState({ selected: row.id });\r\n    this.props.setSelectedRow(row);\r\n  };\r\n\r\n  handleEpitopeRowClick = (row) => {\r\n    let epitopes = this.state.epitopes;\r\n    epitopes[row.name].collapsed = !epitopes[row.name].collapsed;\r\n    this.setState({ epitopes, selected: null });\r\n    this.props.setSelectedRow(null);\r\n  };\r\n\r\n  isSelected = (id) => this.state.selected === id;\r\n\r\n  isCollapsed = (name) => {\r\n    if (this.state.epitopes && this.state.epitopes[name]) {\r\n      return this.state.epitopes[name].collapsed;\r\n    } else {\r\n      return true;\r\n    }\r\n  };\r\n\r\n  render() {\r\n    const { classes } = this.props;\r\n    const { data, order, orderBy } = this.state;\r\n    let tempRow = null;\r\n\r\n    return (\r\n      <Paper className={classes.root}>\r\n        <div className={classes.tableWrapper}>\r\n          <Table className={classes.table} aria-labelledby=\"tableTitle\">\r\n            <ProteomResultsHead\r\n              order={order}\r\n              orderBy={orderBy}\r\n              onRequestSort={this.handleRequestSort}\r\n              rowCount={data.length}\r\n            />\r\n            <TableBody>\r\n              {stableSort(data, getSorting(order, orderBy)).map((n) => {\r\n                const isSelected = this.isSelected(n.id);\r\n                let epitopeRow = null;\r\n                if (tempRow === null || tempRow.name !== n.name) {\r\n                  epitopeRow = n;\r\n                }\r\n                tempRow = n;\r\n                return (\r\n                  <React.Fragment key={uuidv4()}>\r\n                    {epitopeRow !== null && (\r\n                      <TableRow\r\n                        hover\r\n                        key={uuidv4()}\r\n                        onClick={() => this.handleEpitopeRowClick(n)}\r\n                      >\r\n                        <TableCell>\r\n                          {this.isCollapsed(n.name) ? (\r\n                            <ArrowDropDown />\r\n                          ) : (\r\n                            <ArrowDropUp />\r\n                          )}\r\n                        </TableCell>\r\n                        <TableCell component=\"th\" scope=\"row\">\r\n                          {n.name}\r\n                        </TableCell>\r\n                        <TableCell align=\"right\">{n.score}</TableCell>\r\n                        <TableCell align=\"right\"></TableCell>\r\n                        <TableCell align=\"right\"></TableCell>\r\n                        <TableCell align=\"right\"></TableCell>\r\n                        <TableCell align=\"right\"></TableCell>\r\n                      </TableRow>\r\n                    )}\r\n                    {!this.isCollapsed(n.name) && (\r\n                      <TableRow\r\n                        hover\r\n                        onClick={() => this.handleClick(n)}\r\n                        aria-checked={isSelected}\r\n                        tabIndex={-1}\r\n                        key={uuidv4()}\r\n                        selected={isSelected}\r\n                      >\r\n                        <TableCell></TableCell>\r\n                        <TableCell component=\"th\" scope=\"row\"></TableCell>\r\n                        <TableCell align=\"right\"></TableCell>\r\n                        <TableCell align=\"right\">{n.proteinId}</TableCell>\r\n                        <TableCell align=\"right\">{n.proteinName}</TableCell>\r\n                        <TableCell align=\"right\">{n.location}</TableCell>\r\n                        <TableCell align=\"right\">{n.epitope}</TableCell>\r\n                      </TableRow>\r\n                    )}\r\n                  </React.Fragment>\r\n                );\r\n              })}\r\n            </TableBody>\r\n          </Table>\r\n        </div>\r\n      </Paper>\r\n    );\r\n  }\r\n}\r\n\r\nProteomResults.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  setSelectedRow: PropTypes.func,\r\n  annotations: PropTypes.object,\r\n};\r\n\r\nexport default withStyles(styles)(ProteomResults);\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport { IconButton, Tooltip, SvgIcon } from \"@mui/material\";\r\n\r\nimport { Save } from \"@mui/icons-material\";\r\nimport classNames from \"classnames\";\r\n\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n\r\nimport Backend from \"../../common/utils/Backend\";\r\n\r\nconst styles = (theme) => ({\r\n  root: {\r\n    position: \"relative\",\r\n    height: \"100%\",\r\n  },\r\n  topTools: {\r\n    position: \"absolute\",\r\n    top: 0,\r\n  },\r\n  bottomTools: {\r\n    position: \"absolute\",\r\n    bottom: 0,\r\n  },\r\n  toolbarButton: {\r\n    display: \"inline-block\",\r\n    width: 40,\r\n    height: 40,\r\n    padding: 8,\r\n    margin: 0,\r\n  },\r\n  toolbarButtonChecked: {\r\n    width: 40,\r\n    color: theme.palette.primary.main,\r\n  },\r\n});\r\n\r\nclass ProteomToolBar extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n\r\n    if (props.project.state && props.project.state === \"success\") {\r\n      let downloadPath = Backend.downloadReport(this.props.project.id);\r\n      console.log(\"downloadPath:\", downloadPath);\r\n    }\r\n  }\r\n\r\n  render() {\r\n    const { classes, project } = this.props;\r\n\r\n    return (\r\n      <div className={classes.root}>\r\n        <div className={classes.topTools}>\r\n          {project.state && project.state === \"success\" && (\r\n            <Tooltip disableInteractive title=\"Download excel sheet\">\r\n              <IconButton\r\n                className={classNames(\r\n                  classes.toolbarButton,\r\n                  classes.toolbarButtonChecked\r\n                )}\r\n                href={Backend.downloadReport(this.props.project.id)}\r\n                download\r\n                size=\"large\"\r\n              >\r\n                <SvgIcon>\r\n                  <svg\r\n                    aria-hidden=\"true\"\r\n                    focusable=\"false\"\r\n                    data-prefix=\"fas\"\r\n                    data-icon=\"table\"\r\n                    className=\"svg-inline--fa fa-table fa-w-16\"\r\n                    role=\"img\"\r\n                    xmlns=\"http://www.w3.org/2000/svg\"\r\n                    viewBox=\"0 0 512 512\"\r\n                  >\r\n                    <path\r\n                      fill=\"currentColor\"\r\n                      d=\"M464 32H48C21.49 32 0 53.49 0 80v352c0 26.51 21.49 48 48 48h416c26.51 0 48-21.49 48-48V80c0-26.51-21.49-48-48-48zM224 416H64v-96h160v96zm0-160H64v-96h160v96zm224 160H288v-96h160v96zm0-160H288v-96h160v96z\"\r\n                    ></path>\r\n                  </svg>\r\n                </SvgIcon>\r\n              </IconButton>\r\n            </Tooltip>\r\n          )}\r\n        </div>\r\n        <div className={classes.bottomTools}>\r\n          <Tooltip disableInteractive title=\"Save [Ctrl]+[S]\">\r\n            <IconButton\r\n              className={classNames(\r\n                classes.toolbarButton,\r\n                classes.toolbarButtonChecked\r\n              )}\r\n              onClick={this.props.onSave}\r\n              size=\"large\"\r\n            >\r\n              <Save />\r\n            </IconButton>\r\n          </Tooltip>\r\n        </div>\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nProteomToolBar.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  onSave: PropTypes.func,\r\n  project: PropTypes.object,\r\n};\r\n\r\nexport default withStyles(styles)(ProteomToolBar);\r\n","import React, { Component } from \"react\";\r\nimport { withRouter } from \"react-router-dom\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport withStyles from \"@mui/styles/withStyles\";\r\nimport ProteomeSideBar from \"./components/ProteomSideBar\";\r\nimport ProteomResults from \"./components/ProteomResults\";\r\nimport ProteomToolBar from \"./components/ProteomToolBar\";\r\nimport Backend from \"../common/utils/Backend\";\r\n\r\nconst styles = {\r\n  outerContainer: {\r\n    overflow: \"hidden\",\r\n    position: \"relative\",\r\n    width: \"100%\",\r\n    height: \"100%\",\r\n    background: \"#EBEBEB\",\r\n    //background: \"blue\",\r\n    display: \"grid\",\r\n    gridTemplateColumns: \"auto 50px 456px\",\r\n  },\r\n  TableContainer: {\r\n    background: \"white\",\r\n    marginRight: 5,\r\n    overflow: \"auto\",\r\n  },\r\n  PreviewContainer: {\r\n    background: \"white\",\r\n  },\r\n  ToolBarContainer: {\r\n    background: \"white\",\r\n    margin: \"0 5px\",\r\n  },\r\n  SideBarContainer: {\r\n    background: \"white\",\r\n  },\r\n};\r\n\r\nclass ProteomeViewer extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n    this.state = {\r\n      selectedRow: null,\r\n      project: null,\r\n      annotations: {},\r\n      nameChanged: false,\r\n    };\r\n  }\r\n\r\n  componentDidMount = () => {\r\n    window.addEventListener(\"keydown\", this.keyDown);\r\n    Backend.loadProject(\r\n      {\r\n        id: this.props.id,\r\n      },\r\n      (project) => {\r\n        if (project.projectData) {\r\n          project.metaData = project.projectData.metaData;\r\n          project.name = project.projectData.name;\r\n        } else {\r\n          project.metaData = JSON.parse(project.metaData);\r\n        }\r\n        window.setNavigationbarTitle(\r\n          `${project.name} (${project.viewerConfig.project.label})`\r\n        );\r\n        this.setState({ project: project });\r\n        Backend.loadAnnotationsObject(\r\n          { id: project.id, fileId: project.files[0].id },\r\n          (result) => {\r\n            if (result.annotations) {\r\n              this.setState({ annotations: result.annotations });\r\n            }\r\n          }\r\n        );\r\n      }\r\n    );\r\n    Backend.getCurrentUser((user) => {\r\n      this.setState({ user: user.fullName });\r\n    });\r\n  };\r\n\r\n  componentWillUnmount() {\r\n    window.removeEventListener(\"keydown\", this.keyDown);\r\n  }\r\n  /**\r\n   * handle shortcut\r\n   * @param {ActionEvent} e Event when keyboard button is pressed\r\n   */\r\n  keyDown = (e) => {\r\n    if (e.ctrlKey && e.key === \"s\") {\r\n      this.saveFunction((result) => console.log(\"saved:\", result));\r\n      e.preventDefault();\r\n    }\r\n  };\r\n\r\n  setSelectedRow = (row) => {\r\n    this.setState({ selectedRow: row });\r\n  };\r\n\r\n  createProjectModel = () => {\r\n    const { project, user } = this.state;\r\n\r\n    const projectModel = {\r\n      name: project.name,\r\n      user: user,\r\n      id: project.id,\r\n      readableId: project.readableId,\r\n      metaData: project.metaData,\r\n      type: project.type,\r\n      tools: project.viewerConfig.project.tools,\r\n      job: project.viewerConfig.project.job,\r\n      files: project.files,\r\n    };\r\n    console.log(\"projectModel:\", projectModel);\r\n    return projectModel;\r\n  };\r\n\r\n  saveFunction = (callback) => {\r\n    if (this.state) {\r\n      if (this.state.nameChanged) {\r\n        Backend.renameProject(\r\n          this.state.project.id,\r\n          this.state.project.name,\r\n          () => {\r\n            console.log(\"project name changed to:\", this.state.project.name);\r\n          }\r\n        );\r\n      }\r\n      Backend.saveProject(this.createProjectModel(), (data) => {\r\n        if (data.success) {\r\n          window.showSuccessSnackbar(\"Project saved succesfully!\");\r\n          callback(true);\r\n        } else {\r\n          window.showErrorSnackbar(\"Project couldn't be saved!\");\r\n          callback(false);\r\n        }\r\n      });\r\n    }\r\n  };\r\n  saveAndRunProject = () => {\r\n    this.saveFunction((success) => {\r\n      if (success) {\r\n        Backend.setProjectsPending([this.state.project.id], () => {\r\n          this.props.history.push(\"/\");\r\n        });\r\n      }\r\n    });\r\n  };\r\n\r\n  onChangeMetaData = (field, e) => {\r\n    this.setState((prevState) => {\r\n      let project = Object.assign({}, prevState.project);\r\n      project.metaData[field] = e;\r\n      return { project };\r\n    });\r\n  };\r\n\r\n  changeProjectName = (projectName) => {\r\n    this.setState((prevState) => {\r\n      let project = Object.assign({}, prevState.project);\r\n      project.name = projectName;\r\n      return { project, nameChanged: true };\r\n    });\r\n  };\r\n\r\n  render() {\r\n    const { classes } = this.props;\r\n\r\n    return (\r\n      <div className={classes.outerContainer}>\r\n        <div className={classes.TableContainer}>\r\n          <ProteomResults\r\n            annotations={this.state.annotations}\r\n            setSelectedRow={this.setSelectedRow}\r\n          />\r\n        </div>\r\n        <div className={classes.ToolBarContainer}>\r\n          {this.state.project && (\r\n            <ProteomToolBar\r\n              onSave={this.saveFunction}\r\n              project={this.state.project}\r\n            />\r\n          )}\r\n        </div>\r\n        <div className={classes.SideBarContainer}>\r\n          <ProteomeSideBar\r\n            project={this.state.project}\r\n            selectedRow={this.state.selectedRow}\r\n            onChangeMetaData={this.onChangeMetaData}\r\n            changeProjectName={this.changeProjectName}\r\n            saveAndRunProject={this.saveAndRunProject}\r\n          />\r\n        </div>\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nProteomeViewer.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  id: PropTypes.string,\r\n  history: PropTypes.array,\r\n};\r\n\r\nexport default withRouter(withStyles(styles)(ProteomeViewer));\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport { withRouter } from \"react-router-dom\";\r\n\r\nimport Backend from \"../common/utils/Backend\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n\r\nimport Datasheet from \"react-datasheet\";\r\nimport \"react-datasheet/lib/react-datasheet.css\";\r\n\r\nimport XLSX from \"xlsx\";\r\nimport { Button, Tabs, Tab, Paper } from \"@mui/material\";\r\n\r\nconst styles = () => ({\r\n  root: {\r\n    width: \"100%\",\r\n    height: \"100%\",\r\n    \"& .data-editor\": {\r\n      height: \"24px !important\",\r\n      boxSizing: \"border-box !important\",\r\n    },\r\n    \"& .value-viewer\": {\r\n      padding: \"0 10px !important\",\r\n    },\r\n    display: \"grid\",\r\n    gridTemplateRows: \"auto auto 1fr\",\r\n    overflow: \"hidden\",\r\n  },\r\n  resultTabContent: {\r\n    height: \"100%\",\r\n    overflowY: \"auto\",\r\n  },\r\n});\r\n\r\nclass Report extends Component {\r\n  _isMounted = false;\r\n  state = {\r\n    activeTab: 0,\r\n    settings: { tempPath: \"\" },\r\n    project: undefined,\r\n    charts: [],\r\n  };\r\n  setMountedState = (stateObject, callback) => {\r\n    if (this._isMounted) {\r\n      this.setState(stateObject, callback);\r\n    }\r\n  };\r\n  componentWillUnmount() {\r\n    this._isMounted = false;\r\n  }\r\n  componentDidMount() {\r\n    this._isMounted = true;\r\n    const chartFolderPath = \"/\" + this.props.id + \"/charts/\";\r\n    Backend.walkProjectDirFiles(chartFolderPath, (charts) => {\r\n      this.setMountedState({ charts });\r\n    });\r\n\r\n    Backend.loadProject(\r\n      {\r\n        id: this.props.id,\r\n      },\r\n      (project) => {\r\n        this.setMountedState({ project: project });\r\n        window.setNavigationbarTitle(\r\n          `Results: ${project.name} (${project.viewerConfig.project.label})`\r\n        );\r\n      }\r\n    );\r\n\r\n    Backend.loadReport(\r\n      this.props.id,\r\n      (data) => {\r\n        let workbook = XLSX.read(data, { type: \"array\" });\r\n\r\n        if (\r\n          workbook.SheetNames.length === 1 &&\r\n          workbook.SheetNames[0] === \"Sheet1\" &&\r\n          workbook.Sheets.Sheet1.A1.v.toLowerCase().startsWith(\"error\")\r\n        ) {\r\n          window.showErrorSnackbar(workbook.Sheets.Sheet1.A1.v);\r\n        }\r\n\r\n        let sheets = workbook.SheetNames.map((sheet_name) =>\r\n          XLSX.utils.sheet_to_json(workbook.Sheets[sheet_name], {\r\n            header: 1,\r\n            raw: true,\r\n          })\r\n        );\r\n        for (let i = 0; i < sheets.length; i++) {\r\n          for (let j = 0; j < sheets[i].length; j++) {\r\n            for (let k = 0; k < sheets[i][j].length; k++) {\r\n              if (typeof sheets[i][j][k] === \"undefined\") {\r\n                sheets[i][j][k] = \"\";\r\n              }\r\n            }\r\n          }\r\n        }\r\n        const abc = [...Array(26)].map((val, i) => String.fromCharCode(i + 65));\r\n        sheets = sheets.map((sheet) => {\r\n          let rowLength = 0;\r\n          let lastContentIdx = 0;\r\n          for (let i = 0; i < sheet.length; i++) {\r\n            if (sheet[i].length > 0) lastContentIdx = i;\r\n            if (sheet[i].length > rowLength) rowLength = sheet[i].length;\r\n          }\r\n          sheet = sheet.filter((item, idx) => idx <= lastContentIdx);\r\n          return sheet.map((row) => {\r\n            row = row.map((cell) => {\r\n              if (typeof cell === \"number\") {\r\n                // if (sheet[0][i] && sheet[0][i].includes(\"%\")) {\r\n                //   cell *= 100;\r\n                // }\r\n                if (cell % 1 > 0 && cell < 1) {\r\n                  cell = cell.toFixed(6);\r\n                } else if (cell % 1 > 0) {\r\n                  // Check if float precision exists\r\n                  cell = cell.toFixed(2);\r\n                }\r\n              } else if (\r\n                typeof cell === \"string\" &&\r\n                cell.includes(\"Ausreißer ignorieren\")\r\n              ) {\r\n                cell = \"\";\r\n              }\r\n              return { value: cell };\r\n            });\r\n            while (row.length < rowLength) {\r\n              row.push({ value: \"\" });\r\n            }\r\n            return row;\r\n          });\r\n        });\r\n        for (let sheet of sheets) {\r\n          let addRow = new Array(sheet[0].length);\r\n          addRow = sheet[0].map((v, i) => {\r\n            return { value: abc[i], readOnly: true };\r\n          });\r\n          sheet = sheet.unshift(addRow);\r\n        }\r\n        for (let sheet of sheets) {\r\n          for (let [index, row] of sheet.entries()) {\r\n            row = row.unshift({\r\n              value: index === 0 ? \"\" : index,\r\n              readOnly: true,\r\n            });\r\n          }\r\n        }\r\n\r\n        this.setMountedState({\r\n          workbook: workbook,\r\n          array_sheets: sheets,\r\n        });\r\n      },\r\n      (error) =>\r\n        window.showErrorSnackbar(`Error loading results table: ${error}`)\r\n    );\r\n  }\r\n  handleChange = (event, value) => {\r\n    this.setMountedState({ activeTab: value });\r\n  };\r\n  render() {\r\n    const { classes } = this.props;\r\n    const { project } = this.state;\r\n    return (\r\n      <div className={classes.root}>\r\n        <div>\r\n          <Button\r\n            color=\"primary\"\r\n            onClick={() => {\r\n              Backend.downloadReport(this.props.id, project.name);\r\n            }}\r\n          >\r\n            Download Excel File\r\n          </Button>\r\n          <span>\r\n            (All Excel files are saved here: {this.state.settings.tempPath}\r\n            reports/)\r\n          </span>\r\n        </div>\r\n        <Tabs\r\n          variant=\"fullWidth\"\r\n          indicatorColor=\"primary\"\r\n          textColor=\"primary\"\r\n          value={this.state.activeTab}\r\n          onChange={this.handleChange}\r\n        >\r\n          {this.state.workbook &&\r\n            this.state.workbook.SheetNames.map((tab_name, index) => (\r\n              <Tab key={index} label={tab_name} />\r\n            ))}\r\n          {this.state.charts.length > 0 && <Tab key={99} label=\"Charts\" />}\r\n        </Tabs>\r\n        <div className={classes.resultTabContent}>\r\n          {this.state.array_sheets &&\r\n            this.state.array_sheets.map((array_sheet, index) => (\r\n              <div\r\n                key={index}\r\n                style={{\r\n                  display: index === this.state.activeTab ? \"block\" : \"none\",\r\n                }}\r\n              >\r\n                <Paper\r\n                  style={{\r\n                    margin: \"auto\",\r\n                    padding: \"5px\",\r\n                    width: \"fit-content\",\r\n                  }}\r\n                >\r\n                  <Datasheet\r\n                    data={array_sheet}\r\n                    valueRenderer={(cell) => cell.value}\r\n                    onCellsChanged={() => {\r\n                      return;\r\n                    }}\r\n                    overflow=\"clip\"\r\n                  />\r\n                </Paper>\r\n              </div>\r\n            ))}\r\n          {this.state.array_sheets && (\r\n            <div\r\n              key={199}\r\n              style={{\r\n                display:\r\n                  this.state.array_sheets.length === this.state.activeTab\r\n                    ? \"block\"\r\n                    : \"none\",\r\n              }}\r\n            >\r\n              <Paper style={{ margin: \"auto\", padding: \"5px\", maxWidth: 1000 }}>\r\n                {this.state.charts.map((chart, idx) => (\r\n                  <img\r\n                    key={idx}\r\n                    style={{\r\n                      width: \"100%\",\r\n                      display: \"block\",\r\n                      margin: \"0px\",\r\n                      objectFit: \"contain\",\r\n                    }}\r\n                    src={Backend.renderReportChart(chart.path)}\r\n                    alt={chart.path}\r\n                  />\r\n                ))}\r\n              </Paper>\r\n            </div>\r\n          )}\r\n        </div>\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nReport.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  id: PropTypes.string,\r\n  history: PropTypes.object,\r\n};\r\n\r\nexport default withRouter(withStyles(styles)(Report));\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport { withSpinloader } from \"../../common/components/Spinloader\";\r\nimport { withRouter } from \"react-router-dom\";\r\nimport Backend from \"../../common/utils/Backend\";\r\n\r\nconst ScanViewerContext = React.createContext();\r\n\r\nexport const withScanViewerContext = (Component) => {\r\n  const WrappedComponent = (props) => (\r\n    <ScanViewerContext.Consumer>\r\n      {(context) => <Component {...props} scanViewerContext={context} />}\r\n    </ScanViewerContext.Consumer>\r\n  );\r\n\r\n  WrappedComponent.displayName = `withScanViewerContext(${\r\n    Component.displayName || Component.name || \"Component\"\r\n  })`;\r\n\r\n  return WrappedComponent;\r\n};\r\n\r\n/**\r\n * handles the communication with backend.\r\n * this is the main component, it has to be added at the root of the app.\r\n * all components that use withPersistentStorage(...) will have access to it via this.props.persistentStorage...\r\n */\r\nclass ScanViewerProvider extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n    this._isMounted = false;\r\n    this.state = {\r\n      mapVisible: true,\r\n      cameraVisible: false,\r\n      gridVisible: true,\r\n      debugDataVisible: false,\r\n      commentsVisible: true,\r\n      automationVisible: true,\r\n      automatedMicroscopeStatus: \"notConnected\",\r\n      focusPeakingOn: true,\r\n      sideBarContent: \"fluorescence\",\r\n      streamReady: false,\r\n      slideScanning: false,\r\n      activeTab: 0,\r\n      filePath: \"\",\r\n      commentCount: 0,\r\n      w: 400,\r\n      h: 400,\r\n      fluorescenceChannels: \"\",\r\n      selectedChannel: \"\",\r\n      cameraMinFramerate: 0,\r\n      cameraMaxFramerate: 30,\r\n      cameraMinExposureTime: 30,\r\n      cameraMaxExposureTime: 99999,\r\n      cameraMinGain: 0.1,\r\n      cameraMaxGain: 12.0,\r\n      cameraMinGamma: 0.0,\r\n      cameraMaxGamma: 3.95,\r\n      cameraMinBlackValue: 0.0,\r\n      cameraMaxBlackValue: 31.9,\r\n      pixelSizeCamera: 3.45,\r\n      cameraColorMin: 0,\r\n      cameraColorMax: 15.99,\r\n      importFilePath: \"\",\r\n    };\r\n    this.lenseType = null;\r\n    this.adapterType = null;\r\n\r\n    this.channels = [];\r\n    this.io = Backend.getScanSocket();\r\n    this.io.on(\"connect\", () => {\r\n      this.io.emit(\"scan_connect\", \"\");\r\n    });\r\n\r\n    this.io.on(\"scan_message\", (message_content) => {\r\n      const data = JSON.parse(message_content);\r\n      if (data.state) {\r\n        if (data.state === \"stream_ready\") {\r\n          this.setState({ streamReady: true });\r\n        } else if (data.state === \"stitching_start\") {\r\n          props.spinloader.show();\r\n        } else if (data.state === \"stitching\") {\r\n          props.spinloader.showWithProgress({\r\n            message: \"Progress\",\r\n            progress: data.progress,\r\n          });\r\n        } else if (data.state === \"stitching_end\") {\r\n          props.spinloader.hide();\r\n        } else if (data.state === \"camera_error\") {\r\n          window.openResponseDialog(\r\n            \"Camera could not be found. Retry?\",\r\n            (response) => {\r\n              if (!response) {\r\n                this.props.history.push(\"/\");\r\n              }\r\n            }\r\n          );\r\n        } else if (data.state === \"saving_error\") {\r\n          props.spinloader.hide();\r\n          window.openWarningDialog(\r\n            \"Number of channels not equal. Please save in separate file.\"\r\n          );\r\n        } else if (data.state === \"cameraParameters\") {\r\n          this.setState({\r\n            cameraMinFramerate: data.cameraMinFramerate,\r\n            cameraMaxFramerate: data.cameraMaxFramerate,\r\n            cameraMinExposureTime: data.cameraMinExposureTime,\r\n            cameraMaxExposureTime: data.cameraMaxExposureTime,\r\n            cameraMinGain: data.cameraMinGain,\r\n            cameraMaxGain: data.cameraMaxGain,\r\n            cameraMinGamma: data.cameraMinGamma,\r\n            cameraMaxGamma: data.cameraMaxGamma,\r\n            cameraMinBlackValue: data.cameraMinBlackValue,\r\n            cameraMaxBlackValue: data.cameraMaxBlackValue,\r\n            pixelSizeCamera: data.pixelSizeCamera,\r\n          });\r\n        } else if (data.state === \"automatedMicroscope\") {\r\n          if (data.status) {\r\n            this.setState({ automatedMicroscopeStatus: data.status });\r\n          }\r\n        } else if (data.state === \"toggle_state\") {\r\n          // if (data.paused) {\r\n          this.setMountedState({\r\n            slideScanning: !data.paused,\r\n            cameraVisible: data.cameraVisible,\r\n            gridVisible: data.gridVisible,\r\n          });\r\n          // }\r\n        }\r\n      }\r\n    });\r\n  }\r\n\r\n  setMountedState = (stateObject, callback) => {\r\n    if (this._isMounted) {\r\n      this.setState(stateObject, callback);\r\n    }\r\n  };\r\n\r\n  componentDidMount() {\r\n    this._isMounted = true;\r\n    window.addEventListener(\"beforeunload\", this.exitScanner);\r\n    const cameraVisibleValue =\r\n      localStorage.getItem(\"scanCameraVisible\") === \"undefined\"\r\n        ? false\r\n        : localStorage.getItem(\"scanCameraVisible\") === \"true\"\r\n        ? true\r\n        : false;\r\n    const mapVisibleValue =\r\n      localStorage.getItem(\"scanMapVisible\") === \"undefined\"\r\n        ? true\r\n        : localStorage.getItem(\"scanMapVisible\") === \"true\"\r\n        ? true\r\n        : false;\r\n    const gridVisibleValue =\r\n      localStorage.getItem(\"scanGridVisible\") === \"undefined\"\r\n        ? true\r\n        : localStorage.getItem(\"scanGridVisible\") === \"true\"\r\n        ? true\r\n        : false;\r\n    const debugDataVisibleValue =\r\n      localStorage.getItem(\"scanDebugDataVisible\") === \"undefined\"\r\n        ? false\r\n        : localStorage.getItem(\"scanDebugDataVisible\") === \"true\"\r\n        ? true\r\n        : false;\r\n    const commentsVisibleValue =\r\n      localStorage.getItem(\"scanCommentsVisible\") === \"undefined\"\r\n        ? true\r\n        : localStorage.getItem(\"scanCommentsVisible\") === \"true\"\r\n        ? true\r\n        : false;\r\n    const automationVisibleValue =\r\n      localStorage.getItem(\"automationVisibleValue\") === \"undefined\"\r\n        ? true\r\n        : localStorage.getItem(\"automationVisibleValue\") === \"true\"\r\n        ? true\r\n        : false;\r\n    const focusPeakingOnValue =\r\n      localStorage.getItem(\"focusPeakingOnValue\") === \"undefined\"\r\n        ? true\r\n        : localStorage.getItem(\"focusPeakingOnValue\") === \"true\"\r\n        ? true\r\n        : false;\r\n    const sideBarContentValue = localStorage.getItem(\"scanSideBarContent\");\r\n    this.setState({\r\n      cameraVisible: cameraVisibleValue,\r\n      mapVisible: mapVisibleValue,\r\n      gridVisible: gridVisibleValue,\r\n      debugDataVisible: debugDataVisibleValue,\r\n      commentsVisible: commentsVisibleValue,\r\n      sideBarContent: sideBarContentValue,\r\n      automationVisible: automationVisibleValue,\r\n      focusPeakingOn: focusPeakingOnValue,\r\n    });\r\n  }\r\n\r\n  componentWillUnmount() {\r\n    this.exitScanner();\r\n    window.removeEventListener(\"beforeunload\", this.exitScanner);\r\n    this._isMounted = false;\r\n  }\r\n\r\n  setLenseType = (lenseType) => {\r\n    this.lenseType = lenseType;\r\n    console.log(\"this.lenseType\", this.lenseType);\r\n  };\r\n\r\n  setAdapterType = (adapterType) => {\r\n    this.adapterType = adapterType;\r\n    console.log(\"this.adapterType\", this.adapterType);\r\n  };\r\n\r\n  changeScanState = (scanState) => {\r\n    if (scanState === \"scan_save\") {\r\n      this.changeTab(0);\r\n    }\r\n    if (this.io) {\r\n      this.send({ state: scanState });\r\n      this.setMountedState({ slideScanning: scanState === \"scan_start\" });\r\n      if (scanState === \"scan_start\") {\r\n        this.setState({ commentCount: 5 });\r\n      } else if (scanState === \"scan_pause\") {\r\n        this.setState({ commentCount: 6 });\r\n      } else if (scanState === \"scan_reset\") {\r\n        this.setState({ commentCount: 0 });\r\n        this.channels = [];\r\n      }\r\n    }\r\n  };\r\n\r\n  send = (objectToSend) => {\r\n    if (this.io?.connected) {\r\n      this.io.emit(\"scan_message\", JSON.stringify(objectToSend));\r\n    }\r\n  };\r\n\r\n  setScanRendererSize = (w, h) => {\r\n    this.setState({ w: w });\r\n    this.setState({ h: h });\r\n    this.send({\r\n      state: \"renderSize\",\r\n      w: w,\r\n      h: h,\r\n    });\r\n  };\r\n\r\n  changeMicroscopeParams = (paramJson) => {\r\n    paramJson.state = \"microscope_params\";\r\n    this.send(paramJson);\r\n  };\r\n\r\n  changeImportParams = (param) => {\r\n    let data = param[\"data\"];\r\n    switch (param[\"action\"]) {\r\n      case \"filepath\":\r\n        this.setState({ importFilePath: data });\r\n        break;\r\n    }\r\n  };\r\n\r\n  moveCenter = (dx, dy) => {\r\n    this.send({\r\n      state: \"scan_translate\",\r\n      dx: dx,\r\n      dy: dy,\r\n    });\r\n  };\r\n\r\n  sendMinimapClickPosition = (x, y) => {\r\n    this.send({\r\n      state: \"minimap_click\",\r\n      x: x,\r\n      y: y,\r\n    });\r\n  };\r\n\r\n  sendFilePath = (filePath) => {\r\n    this.setState({ filePath: filePath });\r\n    this.send({\r\n      state: \"file_name_change\",\r\n      filePath: filePath,\r\n    });\r\n  };\r\n\r\n  changeTab = (tabIdx) => {\r\n    this.setMountedState({ activeTab: tabIdx });\r\n  };\r\n\r\n  exportWIP = () => {\r\n    this.send({\r\n      state: \"export_wip\",\r\n      filePath: \"\",\r\n      channels: this.channels,\r\n    });\r\n    this.channels = [];\r\n  };\r\n\r\n  importWIP = () => {\r\n    this.send({\r\n      state: \"import_wip\",\r\n      filepath: this.state.importFilePath,\r\n    });\r\n  };\r\n\r\n  createWSI = () => {\r\n    const objectToSend = {\r\n      state: \"scan_save\",\r\n      filePath: this.state.filePath,\r\n      channels: this.channels,\r\n      lenseType: this.lenseType,\r\n      adapterType: this.adapterType,\r\n    };\r\n    this.send(objectToSend);\r\n    this.channels = [];\r\n  };\r\n\r\n  setWhiteBalanceState = (value) => {\r\n    this.send({\r\n      state: \"whiteBalance\",\r\n      value: value,\r\n    });\r\n  };\r\n\r\n  setVignetteState = (value) => {\r\n    this.send({\r\n      state: \"vignette\",\r\n      value: value,\r\n    });\r\n  };\r\n\r\n  setFeaturePointsState = (checked, numFeaturePoints) => {\r\n    this.send({\r\n      state: \"featurePoint\",\r\n      checked: checked,\r\n      numFeaturePoints: numFeaturePoints,\r\n    });\r\n  };\r\n\r\n  toggleCamera = () => {\r\n    const value = !this.state.cameraVisible;\r\n    this.send({\r\n      state: \"toggle\",\r\n      target: \"camera\",\r\n      value: value,\r\n    });\r\n    this.setMountedState({ cameraVisible: value });\r\n    localStorage.setItem(\"scanCameraVisible\", value.toString());\r\n  };\r\n\r\n  toggleMinimap = () => {\r\n    const value = !this.state.mapVisible;\r\n    this.setMountedState({ mapVisible: value });\r\n    localStorage.setItem(\"scanMapVisible\", value.toString());\r\n  };\r\n\r\n  toggleGrid = () => {\r\n    const value = !this.state.gridVisible;\r\n    this.send({\r\n      state: \"toggle\",\r\n      target: \"grid\",\r\n      value: value,\r\n    });\r\n    this.setMountedState({ gridVisible: value });\r\n    localStorage.setItem(\"scanGridVisible\", value.toString());\r\n  };\r\n\r\n  toggleDebugData = () => {\r\n    const value = !this.state.debugDataVisible;\r\n    this.setMountedState({ debugDataVisible: value });\r\n    localStorage.setItem(\"scanDebugDataVisible\", value.toString());\r\n  };\r\n\r\n  toggleComments = () => {\r\n    const value = !this.state.commentsVisible;\r\n    this.setMountedState({ commentsVisible: value });\r\n    localStorage.setItem(\"scanCommentsVisible\", value.toString());\r\n  };\r\n\r\n  toggleFluorescence = () => {\r\n    let value = \"\";\r\n    if (this.state.sideBarContent === \"fluorescence\") {\r\n      this.setMountedState({ sideBarContent: \"microscopeSettings\" });\r\n      value = \"microscopeSettings\";\r\n    } else {\r\n      this.setMountedState({ sideBarContent: \"fluorescence\" });\r\n      value = \"fluorescence\";\r\n    }\r\n    localStorage.setItem(\"scanSideBarContent\", value);\r\n  };\r\n\r\n  updateFluorescenceParams = (paramJson) => {\r\n    this.send(paramJson);\r\n  };\r\n\r\n  toggleAutomation = () => {\r\n    const value = !this.state.automationVisible;\r\n    this.setMountedState({ automationVisible: value });\r\n    localStorage.setItem(\"automationVisibleValue\", value.toString());\r\n  };\r\n\r\n  toggleFocusPeaking = () => {\r\n    if (\r\n      this.state.cameraVisible == false &&\r\n      this.state.focusPeakingOn == false\r\n    ) {\r\n      this.toggleCamera();\r\n    }\r\n    const value = !this.state.focusPeakingOn;\r\n    this.send({\r\n      state: \"toggle\",\r\n      target: \"focusPeaking\",\r\n      value: value,\r\n    });\r\n    this.setMountedState({ focusPeakingOn: value });\r\n    localStorage.setItem(\"focusPeakingOnValue\", value.toString());\r\n  };\r\n\r\n  deleteScanArea = (deleteArea) => {\r\n    console.log(\"deleteScanArea() called\", deleteArea);\r\n    this.send({\r\n      state: \"delete_area\",\r\n      x1: deleteArea.p1.centeredX,\r\n      y1: deleteArea.p1.centeredY,\r\n      x2: deleteArea.p2.centeredX,\r\n      y2: deleteArea.p2.centeredY,\r\n    });\r\n  };\r\n\r\n  zoomIn = () => {\r\n    this.send({\r\n      state: \"zoom_in\",\r\n    });\r\n  };\r\n\r\n  zoomOut = () => {\r\n    this.send({\r\n      state: \"zoom_out\",\r\n    });\r\n  };\r\n\r\n  zoomReset = () => {\r\n    this.send({\r\n      state: \"zoom_reset\",\r\n    });\r\n  };\r\n\r\n  exitScanner = () => {\r\n    this.send({\r\n      state: \"exit_scanner\",\r\n    });\r\n    this.io.disconnect();\r\n  };\r\n\r\n  useAutomatedMicroscope = (command, data) => {\r\n    this.send({\r\n      state: \"useAutomatedMicroscope\",\r\n      command: command,\r\n      data: data,\r\n    });\r\n  };\r\n\r\n  render() {\r\n    return (\r\n      <ScanViewerContext.Provider\r\n        value={{\r\n          channels: this.channels,\r\n          setState: this.setMountedState,\r\n          changeScanState: this.changeScanState,\r\n          setScanRendererSize: this.setScanRendererSize,\r\n          sendMinimapClickPosition: this.sendMinimapClickPosition,\r\n          sendFilePath: this.sendFilePath,\r\n          changeMicroscopeParams: this.changeMicroscopeParams,\r\n          changeImportParams: this.changeImportParams,\r\n          changeTab: this.changeTab,\r\n          moveCenter: this.moveCenter,\r\n          exportWIP: this.exportWIP,\r\n          importWIP: this.importWIP,\r\n          createWSI: this.createWSI,\r\n          setVignetteState: this.setVignetteState,\r\n          setWhiteBalanceState: this.setWhiteBalanceState,\r\n          setFeaturePointsState: this.setFeaturePointsState,\r\n          toggleCamera: this.toggleCamera,\r\n          toggleMinimap: this.toggleMinimap,\r\n          toggleGrid: this.toggleGrid,\r\n          toggleFluorescence: this.toggleFluorescence,\r\n          updateFluorescenceParams: this.updateFluorescenceParams,\r\n          toggleComments: this.toggleComments,\r\n          toggleDebugData: this.toggleDebugData,\r\n          deleteScanArea: this.deleteScanArea,\r\n          zoomReset: this.zoomReset,\r\n          zoomIn: this.zoomIn,\r\n          zoomOut: this.zoomOut,\r\n          useAutomatedMicroscope: this.useAutomatedMicroscope,\r\n          toggleAutomation: this.toggleAutomation,\r\n          toggleFocusPeaking: this.toggleFocusPeaking,\r\n          setLenseType: this.setLenseType,\r\n          setAdapterType: this.setAdapterType,\r\n          ...this.state,\r\n        }}\r\n      >\r\n        {this.props.children}\r\n      </ScanViewerContext.Provider>\r\n    );\r\n  }\r\n}\r\n\r\nScanViewerProvider.propTypes = {\r\n  children: PropTypes.element.isRequired,\r\n  spinloader: PropTypes.object,\r\n  history: PropTypes.object,\r\n};\r\n\r\nexport default withRouter(withSpinloader(ScanViewerProvider));\r\n","import React, { useState, useEffect } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport { makeStyles } from \"@mui/styles\";\r\nimport Backend from \"../../common/utils/Backend\";\r\n\r\nconst useStyles = makeStyles({\r\n  root: {\r\n    position: \"relative\",\r\n    maxWidth: \"100%\",\r\n    maxHeight: \"100%\",\r\n    pointerEvents: \"none\",\r\n  },\r\n  deleteArea: {\r\n    position: \"absolute\",\r\n    left: 0,\r\n    top: 0,\r\n    width: 0,\r\n    height: 0,\r\n    border: \"2px solid red\",\r\n    background: \"rgba(0, 0, 0, 0.5)\",\r\n\r\n    pointerEvents: \"none\",\r\n  },\r\n});\r\n\r\nfunction ScanStream({ streamKey, deleteArea }) {\r\n  let deleteAreaStyle = deleteArea\r\n    ? {\r\n        left: Math.min(deleteArea.p1.x, deleteArea.p2.x),\r\n        top: Math.min(deleteArea.p1.y, deleteArea.p2.y),\r\n        width: Math.abs(deleteArea.p1.x - deleteArea.p2.x),\r\n        height: Math.abs(deleteArea.p1.y - deleteArea.p2.y),\r\n      }\r\n    : {};\r\n  const classes = useStyles();\r\n  const [imageSrc, setImageSrc] = useState(\"\");\r\n\r\n  useEffect(() => {\r\n    const socket = Backend.getScanSocket();\r\n\r\n    socket.on(streamKey, (src) => {\r\n      // Release memory for the previous image\r\n      setImageSrc(\"\");\r\n\r\n      // Set the new image source\r\n      setImageSrc(\"data:image/jpeg;base64,\" + src);\r\n    });\r\n\r\n    return () => {\r\n      // Clean up the effect\r\n      setImageSrc(\"\");\r\n      socket.disconnect();\r\n    };\r\n  }, []);\r\n\r\n  return (\r\n    <div className={classes.imgStyle}>\r\n      <img src={imageSrc} alt=\"stream medium\" />\r\n      {deleteArea && (\r\n        <div className={classes.deleteArea} style={deleteAreaStyle}></div>\r\n      )}\r\n    </div>\r\n  );\r\n}\r\n\r\nScanStream.propTypes = {\r\n  streamKey: PropTypes.string.isRequired,\r\n  deleteArea: PropTypes.object,\r\n};\r\n\r\nexport default ScanStream;\r\n","import React, { Component } from \"react\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\nimport PropTypes from \"prop-types\";\r\nimport classNames from \"classnames\";\r\nimport DragIndicator from \"@mui/icons-material/DragIndicator\";\r\nimport Draggable from \"react-draggable\";\r\n\r\nimport { withScanViewerContext } from \"../contexts/ScanViewerContext\";\r\nimport ScanStream from \"./ScanStream\";\r\n\r\nconst styles = {\r\n  root: {\r\n    position: \"absolute\",\r\n    left: 0,\r\n    bottom: 0,\r\n    height: 170,\r\n    width: 220,\r\n    border: \"2px solid rgb(85, 85, 85)\",\r\n    opacity: 0.8,\r\n    textAlign: \"center\",\r\n    userSelect: \"none\",\r\n  },\r\n  streamImg: {\r\n    background: \"black\",\r\n    maxWidth: \"100%\",\r\n    maxHeight: \"100%\",\r\n    display: \"inline-block\",\r\n    pointerEvents: \"all\",\r\n  },\r\n  dragIndicator: {\r\n    color: \"#fff\",\r\n    position: \"absolute\",\r\n    top: 5,\r\n    right: 5,\r\n    cursor: \"grab\",\r\n  },\r\n  grabbing: {\r\n    cursor: \"grabbing\",\r\n  },\r\n};\r\n\r\n/**\r\n * class to render minimap and handle interaction\r\n */\r\nclass ScanMinimap extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n\r\n    this.state = {\r\n      grabbing: false,\r\n    };\r\n    this.minimapRef = React.createRef();\r\n    this.x = 0;\r\n    this.y = 0;\r\n  }\r\n\r\n  /**\r\n   * by clicking on the minimap move the rectangle and send data to scanViewer\r\n   * @param {ActionEvent} e Mouse event\r\n   */\r\n  onMinimapClick = (e) => {\r\n    const parentRect = this.minimapRef.current.getBoundingClientRect();\r\n    const x = e.clientX - parentRect.x;\r\n    const y = e.clientY - parentRect.y;\r\n    this.props.scanViewerContext.sendMinimapClickPosition(x, y);\r\n  };\r\n\r\n  /**\r\n   * Change position of minimap canvas\r\n   * @param {AcitonEvent} e Mouse event\r\n   * @param {Object} ui object with x,y coordinate of mouse location\r\n   */\r\n  handleDrag = (e, ui) => {\r\n    this.x = ui.x;\r\n    this.y = ui.y;\r\n  };\r\n\r\n  // handle dragging of the minimap region rectangle\r\n  mouseDown = (event) => {\r\n    this.onMinimapClick(event);\r\n    this.dragging = true;\r\n    event.preventDefault();\r\n  };\r\n\r\n  // handle dragging of the minimap region rectangle\r\n  mouseMove = (event) => {\r\n    if (this.dragging == true) {\r\n      this.onMinimapClick(event);\r\n    }\r\n    event.preventDefault();\r\n  };\r\n\r\n  mouseUp = (event) => {\r\n    this.dragging = false;\r\n    event.preventDefault();\r\n  };\r\n\r\n  render() {\r\n    const { grabbing } = this.state;\r\n    const { classes } = this.props;\r\n    const { mapVisible } = this.props.scanViewerContext;\r\n    return (\r\n      <Draggable\r\n        handle=\".handle\"\r\n        defaultPosition={{ x: 5, y: -15 }}\r\n        onStart={() => this.setState({ grabbing: true })}\r\n        onDrag={this.handleDrag}\r\n        onStop={() => this.setState({ grabbing: false })}\r\n      >\r\n        <div\r\n          style={{\r\n            visibility: mapVisible ? \"visible\" : \"hidden\",\r\n            pointerEvents: \"all\",\r\n          }}\r\n          ref={this.minimapRef}\r\n          className={classes.root}\r\n        >\r\n          <div\r\n            onMouseDown={this.mouseDown}\r\n            onMouseMove={this.mouseMove}\r\n            onMouseUp={this.mouseUp}\r\n          >\r\n            <ScanStream\r\n              className={classes.streamImg}\r\n              streamKey=\"scan_stream_minimap\"\r\n            />\r\n          </div>\r\n\r\n          <DragIndicator\r\n            className={classNames(\r\n              \"handle\",\r\n              classes.dragIndicator,\r\n              grabbing && classes.grabbing\r\n            )}\r\n          />\r\n        </div>\r\n      </Draggable>\r\n    );\r\n  }\r\n}\r\n\r\nScanMinimap.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  scanViewerContext: PropTypes.object.isRequired,\r\n  src: PropTypes.string,\r\n};\r\n\r\nexport default withScanViewerContext(withStyles(styles)(ScanMinimap));\r\n","import React, { Component } from \"react\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\nimport PropTypes from \"prop-types\";\r\nimport {\r\n  Card,\r\n  CardActions,\r\n  CardContent,\r\n  Button,\r\n  Typography,\r\n} from \"@mui/material\";\r\nimport { withScanViewerContext } from \"../contexts/ScanViewerContext\";\r\n\r\nconst styles = {\r\n  cardStyle: {\r\n    position: \"absolute\",\r\n    top: 10,\r\n    left: 0,\r\n    minWidth: 235,\r\n    width: 570,\r\n    maxWidth: \"calc(100% - 16px)\",\r\n    margin: 8,\r\n  },\r\n  previousButtonStyle: {\r\n    position: \"absolute\",\r\n    left: 11,\r\n  },\r\n  nextButtonStyle: {\r\n    position: \"absolute\",\r\n    left: 91,\r\n  },\r\n  cardContentStyle: {\r\n    padding: 16,\r\n    \"&:last-child\": {\r\n      paddingBottom: 0,\r\n    },\r\n  },\r\n  cardActionsStyle: {\r\n    height: 37,\r\n    padding: 0,\r\n    \"&:last-child\": {\r\n      paddingBottom: 8,\r\n    },\r\n  },\r\n  closeButtonStyle: {\r\n    position: \"absolute\",\r\n    right: 8,\r\n  },\r\n};\r\n\r\nconst cameraSettings = {\r\n  heading: \"Camera settings\",\r\n  info: [\r\n    \"Start by adjusting the camera settings\",\r\n    \"by adjusting the picture by using the sliders.\",\r\n    \"\",\r\n    \"\",\r\n    \"\",\r\n    \"\",\r\n    \"\",\r\n  ],\r\n};\r\nconst recordVignette = {\r\n  heading: \"Record vignette\",\r\n  info: [\r\n    \"Click on the fluorescence button, if you want to scan fluorescence. And press NEXT\",\r\n    \"Record the vignette to compensate camera errors.\",\r\n    \"1. Move the visible picture to a mostly white area.\",\r\n    \"2. Click on Record Vignette.\",\r\n    \"3. Move the microscope table for about 1 to 2 seconds in different directions.\",\r\n    \"4. Click on Stop Recording.\",\r\n    \"5. Click on Filter Vignette.\",\r\n  ],\r\n};\r\nconst fluorescenceSettings = {\r\n  heading: \"Fluorescence\",\r\n  info: [\r\n    \"1. Add channels by typing in the name and pressing Enter or the + symbol\",\r\n    \"2. Select the channel you want to scan and click on Play\",\r\n    \"\",\r\n    \"\",\r\n    \"\",\r\n    \"\",\r\n    \"\",\r\n  ],\r\n};\r\nconst startScan = {\r\n  heading: \"Start scan\",\r\n  info: [\r\n    \"1. Move to the position where you want to start your scan.\",\r\n    \"2. Adjust the sharpness.\",\r\n    \"3. Press the Play button and start your scan.\",\r\n    \"\",\r\n    \"\",\r\n    \"\",\r\n    \"\",\r\n  ],\r\n};\r\nconst duringScan = {\r\n  heading: \"Scanning\",\r\n  info: [\r\n    \"If the rectangle is red, the picture is out of focus or the Scanner lost the picture.\",\r\n    \"You can correct the sharpness benchmark in the Settings.\",\r\n    \"If you finished scanning click on the Pause button.\",\r\n    \"If you want to reset the scan, delete the last tiles, click on the Pause button.\",\r\n    \"\",\r\n    \"\",\r\n    \"\",\r\n  ],\r\n};\r\nconst pausedScan = {\r\n  heading: \"Paused\",\r\n  info: [\r\n    \"To save the scan click on the Save button at the bottom of the toolbar.\",\r\n    \"If you want to remove tiles, right click on the tile.\",\r\n    \"If you want to reset the scan, click on the Reset button.\",\r\n    \"If you scan fluorescence, you can add, delete and select other channels in the fluorescence tab.\",\r\n    \"\",\r\n    \"\",\r\n  ],\r\n};\r\nconst saveSettings = {\r\n  heading: \"Save settings\",\r\n  info: [\r\n    \"Select the correct lense and adapter settings.\",\r\n    \"1. Input the file name, the created slide file should be called\",\r\n    \"2. Select the directory where the file should be saved.\",\r\n    \"3. Select whether white balancie should be applied, see preview image.\",\r\n    \"4. Select the lense magnification you have used for your scan.\",\r\n    \"5. Select the right adapter magnification the camera is attached to.\",\r\n    \"\",\r\n  ],\r\n};\r\n\r\n/**\r\n * class to render comments and handle interaction\r\n */\r\nclass ScanComments extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n    this.texts = [\r\n      //if changes happen here, make sure that right indeces are in ScanViewerContext (changeScanSettings)\r\n      cameraSettings,\r\n      recordVignette,\r\n      fluorescenceSettings,\r\n      startScan,\r\n      duringScan,\r\n      pausedScan,\r\n      saveSettings,\r\n    ];\r\n  }\r\n\r\n  render() {\r\n    const { classes, scanViewerContext } = this.props;\r\n    const { commentsVisible } = scanViewerContext;\r\n    const count = scanViewerContext.commentCount;\r\n    return (\r\n      <div>\r\n        <Card\r\n          className={classes.cardStyle}\r\n          sx={{ visibility: commentsVisible ? \"visible\" : \"hidden\" }}\r\n        >\r\n          <CardContent className={classes.cardContentStyle}>\r\n            <Typography\r\n              sx={{ fontSize: 14 }}\r\n              color=\"text.secondary\"\r\n              gutterBottom\r\n            >\r\n              Tips:\r\n            </Typography>\r\n            <Typography variant=\"h5\" component=\"div\">\r\n              {this.texts[count].heading}\r\n            </Typography>\r\n            <Typography component={\"span\"} variant=\"body2\">\r\n              {this.texts[count].info.map((row, idx) => {\r\n                return (\r\n                  <div key={idx} style={{ height: 20 }}>\r\n                    {row}\r\n                  </div>\r\n                );\r\n              })}\r\n            </Typography>\r\n          </CardContent>\r\n          <CardActions className={classes.cardActionsStyle}>\r\n            <Button\r\n              className={classes.previousButtonStyle}\r\n              disabled={\r\n                count === 0 ||\r\n                count ===\r\n                  this.texts.findIndex((element) => element == duringScan) ||\r\n                count ===\r\n                  this.texts.findIndex((element) => element == pausedScan)\r\n              }\r\n              size=\"small\"\r\n              onClick={() => {\r\n                scanViewerContext.setState({ commentCount: count - 1 });\r\n              }}\r\n            >\r\n              Previous\r\n            </Button>\r\n            <Button\r\n              className={classes.nextButtonStyle}\r\n              disabled={\r\n                count === this.texts.length - 1 ||\r\n                count ===\r\n                  this.texts.findIndex((element) => element == duringScan) ||\r\n                count ===\r\n                  this.texts.findIndex((element) => element == startScan) ||\r\n                count ===\r\n                  this.texts.findIndex((element) => element == pausedScan)\r\n              }\r\n              size=\"small\"\r\n              onClick={() => {\r\n                scanViewerContext.setState({ commentCount: count + 1 });\r\n              }}\r\n            >\r\n              Next\r\n            </Button>\r\n            <Button\r\n              className={classes.closeButtonStyle}\r\n              size=\"small\"\r\n              onClick={() => {\r\n                scanViewerContext.setState({ commentsVisible: false });\r\n              }}\r\n            >\r\n              Close\r\n            </Button>\r\n          </CardActions>\r\n        </Card>\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nScanComments.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  scanViewerContext: PropTypes.object.isRequired,\r\n};\r\n\r\nexport default withScanViewerContext(withStyles(styles)(ScanComments));\r\n","import React, { Component } from \"react\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\nimport PropTypes from \"prop-types\";\r\nimport classNames from \"classnames\";\r\nimport DragIndicator from \"@mui/icons-material/DragIndicator\";\r\nimport Draggable from \"react-draggable\";\r\n\r\nconst styles = {\r\n  root: {\r\n    position: \"absolute\",\r\n    left: 0,\r\n    top: 20,\r\n    width: 280,\r\n    border: \"2px solid rgb(85, 85, 85)\",\r\n    opacity: 0.8,\r\n    textAlign: \"left\",\r\n    userSelect: \"none\",\r\n    background: \"rgba(255, 255, 255, 0.95)\",\r\n    padding: 8,\r\n  },\r\n  dragIndicator: {\r\n    color: \"#000\",\r\n    position: \"absolute\",\r\n    top: 5,\r\n    right: 5,\r\n    cursor: \"grab\",\r\n  },\r\n  grabbing: {\r\n    cursor: \"grabbing\",\r\n  },\r\n  debugDataKey: {\r\n    width: 150,\r\n    display: \"inline-block\",\r\n  },\r\n  debugDataValue: {\r\n    display: \"inline-block\",\r\n  },\r\n};\r\n\r\n/**\r\n * class to render minimap and handle interaction\r\n */\r\nclass ScanDebugData extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n\r\n    this.state = {\r\n      grabbing: false,\r\n    };\r\n    this.minimapRef = React.createRef();\r\n    this.x = 0;\r\n    this.y = 0;\r\n  }\r\n\r\n  /**\r\n   * Change position of minimap canvas\r\n   * @param {AcitonEvent} e Mouse event\r\n   * @param {Object} ui object with x,y coordinate of mouse location\r\n   */\r\n  handleDrag = (e, ui) => {\r\n    this.x = ui.x;\r\n    this.y = ui.y;\r\n  };\r\n\r\n  // handle dragging of the minimap region rectangle\r\n  mouseDown = (event) => {\r\n    this.onMinimapClick(event);\r\n    this.dragging = true;\r\n    event.preventDefault();\r\n  };\r\n\r\n  // handle dragging of the minimap region rectangle\r\n  mouseMove = (event) => {\r\n    if (this.dragging == true) {\r\n      this.onMinimapClick(event);\r\n    }\r\n    event.preventDefault();\r\n  };\r\n\r\n  mouseUp = (event) => {\r\n    this.dragging = false;\r\n    event.preventDefault();\r\n  };\r\n\r\n  render() {\r\n    const { grabbing } = this.state;\r\n    const { classes, debugDataList } = this.props;\r\n    const mapVisible = true;\r\n    return (\r\n      <Draggable\r\n        handle=\".handle\"\r\n        defaultPosition={{ x: 5, y: -15 }}\r\n        onStart={() => this.setState({ grabbing: true })}\r\n        onDrag={this.handleDrag}\r\n        onStop={() => this.setState({ grabbing: false })}\r\n      >\r\n        <div\r\n          style={{\r\n            visibility: mapVisible ? \"visible\" : \"hidden\",\r\n            pointerEvents: \"all\",\r\n          }}\r\n          ref={this.minimapRef}\r\n          className={classes.root}\r\n        >\r\n          <div\r\n            onMouseDown={this.mouseDown}\r\n            onMouseMove={this.mouseMove}\r\n            onMouseUp={this.mouseUp}\r\n          >\r\n            {debugDataList.map((data, index) => (\r\n              <div key={index}>\r\n                <div className={classes.debugDataKey}>{data.name}:</div>\r\n                <div className={classes.debugDataValue}>{data.value}</div>\r\n              </div>\r\n            ))}\r\n          </div>\r\n\r\n          <DragIndicator\r\n            className={classNames(\r\n              \"handle\",\r\n              classes.dragIndicator,\r\n              grabbing && classes.grabbing\r\n            )}\r\n          />\r\n        </div>\r\n      </Draggable>\r\n    );\r\n  }\r\n}\r\n\r\nScanDebugData.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  scanViewerContext: PropTypes.object,\r\n  src: PropTypes.string,\r\n  debugDataList: PropTypes.array,\r\n};\r\n\r\nexport default withStyles(styles)(ScanDebugData);\r\n","import React, { useEffect, useState, useRef } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\nimport ScanMinimap from \"./ScanMinimap\";\r\n// import ScanDebug from \"./ScanDebug\";\r\n// import ScanDebug2 from \"./ScanDebug2\";\r\nimport ScanComments from \"./ScanComments\";\r\nimport ScanStream from \"./ScanStream\";\r\nimport Backend from \"../../common/utils/Backend\";\r\n\r\nimport { withScanViewerContext } from \"../contexts/ScanViewerContext\";\r\nimport ScanDebugData from \"./ScanDebugData\";\r\n\r\nconst styles = () => ({\r\n  root: {\r\n    position: \"relative\",\r\n    width: \"100%\",\r\n    height: \"100%\",\r\n    backgroundColor: \"#D3D3D3\",\r\n    display: \"grid\",\r\n    overflow: \"hidden\",\r\n    gridTemplateRows: \"1fr\",\r\n  },\r\n  mainStream: {\r\n    display: \"flex\",\r\n    alignItems: \"center\",\r\n    justifyContent: \"center\",\r\n    width: \"100%\",\r\n    height: \"100%\",\r\n  },\r\n  imgStyle: {\r\n    maxWidth: \"100%\",\r\n    maxHeight: \"100%\",\r\n    pointerEvents: \"none\",\r\n  },\r\n  minimapStream: {\r\n    position: \"absolute\",\r\n    left: 5,\r\n    bottom: 5,\r\n    border: \"3px solid white\",\r\n  },\r\n  progressBar: {\r\n    height: 10,\r\n  },\r\n  debugDataContainer: {\r\n    position: \"absolute\",\r\n    padding: 10,\r\n    margin: 10,\r\n    width: 330,\r\n    left: 0,\r\n    top: 0,\r\n    background: \"white\",\r\n  },\r\n  debugDataKey: {\r\n    width: 150,\r\n    display: \"inline-block\",\r\n  },\r\n  debugDataValue: {\r\n    display: \"inline-block\",\r\n  },\r\n});\r\n\r\nconst ScanRenderer = ({ classes, scanViewerContext }) => {\r\n  const { slideScanning, debugDataVisible } = scanViewerContext;\r\n  // const [imageHash, setImageHash] = useState(Date.now()); // to reload stream\r\n  const [deleteArea, setDeleteArea] = useState(null);\r\n  const [mouseState, setMouseState] = useState(\"idle\");\r\n  const [debugDataList, setDebugDataList] = useState(null);\r\n\r\n  let deleteAreaRef = useRef(null);\r\n  const mainStreamRef = useRef();\r\n\r\n  useEffect(() => {\r\n    window.onbeforeunload = () => {\r\n      cleanup();\r\n    };\r\n    window.addEventListener(\"resize\", () => computeRendererSize());\r\n    computeRendererSize();\r\n    document\r\n      .getElementById(\"scanMainStream\")\r\n      .addEventListener(\"mousewheel\", onMouseWheel, true);\r\n\r\n    const socket = Backend.getSocket();\r\n    socket.on(\"debug_data\", (data) => {\r\n      //parse data to json\r\n      data = JSON.parse(data);\r\n      if (data.data_list) {\r\n        setDebugDataList(data.data_list);\r\n      }\r\n    });\r\n\r\n    return () => {\r\n      cleanup();\r\n    };\r\n  }, []);\r\n\r\n  const onMouseWheel = (e) => {\r\n    if (e.deltaY > 0) {\r\n      scanViewerContext.zoomOut();\r\n    } else if (e.deltaY < 0) {\r\n      scanViewerContext.zoomIn();\r\n    }\r\n  };\r\n\r\n  const computeRendererSize = () => {\r\n    if (mainStreamRef.current) {\r\n      const w = mainStreamRef.current.clientWidth;\r\n      const h = window.innerHeight - 64;\r\n      scanViewerContext.setScanRendererSize(w, h);\r\n    }\r\n  };\r\n\r\n  const setDeleteAreaStart = (e) => {\r\n    const clickPoint = getGridPoint(e);\r\n    deleteAreaRef.current = {\r\n      p1: clickPoint,\r\n      p2: clickPoint,\r\n    };\r\n  };\r\n\r\n  const setDeleteAreaEnd = (e) => {\r\n    if (deleteAreaRef.current === null) return;\r\n    deleteAreaRef.current.p2 = getGridPoint(e);\r\n    setDeleteArea(deleteAreaRef.current);\r\n  };\r\n\r\n  const onMouseDown = (e) => {\r\n    if (e.button === 0 || e.button === 1) {\r\n      setMouseState(\"translate\");\r\n    } else if (e.button === 2) {\r\n      setMouseState(\"delete\");\r\n      setDeleteAreaStart(e);\r\n    }\r\n  };\r\n\r\n  const onMouseUp = (event) => {\r\n    if (mouseState === \"delete\") {\r\n      setDeleteAreaEnd(event);\r\n      scanViewerContext.deleteScanArea(deleteAreaRef.current);\r\n      deleteAreaRef.current = null;\r\n      setDeleteArea(null);\r\n    }\r\n    setMouseState(\"idle\");\r\n  };\r\n\r\n  const onMouseMove = (event) => {\r\n    if (mouseState === \"translate\") {\r\n      scanViewerContext.moveCenter(event.movementX, event.movementY);\r\n    } else if (mouseState === \"delete\") {\r\n      setDeleteAreaEnd(event);\r\n    }\r\n    event.preventDefault(); // prevent image from being marked\r\n  };\r\n\r\n  const getGridPoint = (e) => {\r\n    const parentRect = mainStreamRef.current.getBoundingClientRect();\r\n    const x = e.clientX - parentRect.x;\r\n    const y = e.clientY - parentRect.y;\r\n    const center = [\r\n      parseInt(parentRect.width / 2, 10),\r\n      parseInt(parentRect.height / 2, 10),\r\n    ];\r\n    return {\r\n      x: x,\r\n      y: y,\r\n      centeredX: x - center[0],\r\n      centeredY: y - center[1],\r\n    };\r\n  };\r\n\r\n  const cleanup = () => {\r\n    window.removeEventListener(\"resize\", () => computeRendererSize());\r\n  };\r\n\r\n  return (\r\n    <div className={classes.root} ref={mainStreamRef}>\r\n      <div\r\n        id=\"scanMainStream\"\r\n        onContextMenu={(e) => e.preventDefault()}\r\n        className={classes.mainStream}\r\n        onMouseDown={onMouseDown}\r\n        onMouseMove={onMouseMove}\r\n        onMouseUp={onMouseUp}\r\n        onMouseLeave={onMouseUp}\r\n      >\r\n        <ScanStream streamKey=\"scan_stream_main\" deleteArea={deleteArea} />\r\n      </div>\r\n      {slideScanning && <ScanMinimap />}\r\n\r\n      {/* <ScanDebug src={`${scanDebugStreamSrc}&${imageHash}`} />\r\n      <ScanDebug2 src={`${scanDebugStreamSrc}&${imageHash}`} /> */}\r\n\r\n      {debugDataVisible && debugDataList && (\r\n        <ScanDebugData debugDataList={debugDataList} />\r\n      )}\r\n      <ScanComments />\r\n    </div>\r\n  );\r\n};\r\n\r\nScanRenderer.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  scanViewerContext: PropTypes.object.isRequired,\r\n};\r\n\r\nexport default withScanViewerContext(withStyles(styles)(ScanRenderer));\r\n","import React from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n\r\nimport { FormControl, InputLabel, Select, MenuItem } from \"@mui/material\";\r\n\r\nconst styles = {\r\n  root: {\r\n    display: \"grid\",\r\n    gridTemplateColumns: \"1fr auto\",\r\n  },\r\n  sliderContainer: {\r\n    margin: 0,\r\n    width: \"100%\",\r\n    marginTop: -16,\r\n  },\r\n  input: {\r\n    width: 55,\r\n  },\r\n  iconButton: {\r\n    height: 40,\r\n    marginTop: 16,\r\n  },\r\n};\r\n\r\nclass CustomSelector extends React.Component {\r\n  render() {\r\n    const { params, classes } = this.props;\r\n    const selectedValue = params.options.find(\r\n      (item) => item.name === params.selectedValue\r\n    ).name;\r\n    return (\r\n      <div className={classes.root}>\r\n        <FormControl\r\n          component=\"fieldset\"\r\n          sx={{ m: 1, minWidth: 150 }}\r\n          margin=\"dense\"\r\n        >\r\n          <InputLabel htmlFor={params.name}>{params.label}</InputLabel>\r\n          <Select\r\n            name=\"SelectListItem\"\r\n            label={params.label}\r\n            value={selectedValue}\r\n            onChange={(e) => params.onChange(e.target.value)}\r\n            error={params.errorValue && params.errorValue === selectedValue}\r\n            inputProps={{\r\n              name: params.selectedValue,\r\n              id: params.selectedValue,\r\n            }}\r\n          >\r\n            {params.options.map((value) => (\r\n              <MenuItem key={value.name} value={value.name}>\r\n                {value.label}\r\n              </MenuItem>\r\n            ))}\r\n          </Select>\r\n        </FormControl>\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nCustomSelector.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  params: PropTypes.object.isRequired,\r\n};\r\n\r\nexport default withStyles(styles)(CustomSelector);\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\nimport {\r\n  Button,\r\n  Dialog,\r\n  DialogContent,\r\n  DialogTitle,\r\n  List,\r\n  ListItem,\r\n  ListItemIcon,\r\n  ListItemText,\r\n  Tooltip,\r\n  IconButton,\r\n  TextField,\r\n  FormControl,\r\n  InputLabel,\r\n  Select,\r\n  MenuItem,\r\n  DialogActions,\r\n  Grid,\r\n  Table,\r\n  TableBody,\r\n  TableRow,\r\n  TableCell,\r\n  FormGroup,\r\n  FormControlLabel,\r\n  Checkbox,\r\n} from \"@mui/material\";\r\n\r\nimport Backend from \"../../common/utils/Backend\";\r\nimport { withScanViewerContext } from \"../contexts/ScanViewerContext\";\r\n\r\nimport { Folder, ArrowUpward, Image, Info } from \"@mui/icons-material\";\r\nimport ScanStream from \"./ScanStream\";\r\nimport CustomSelector from \"../../globalComponents/CustomSelector\";\r\nconst styles = (theme) => ({\r\n  root: {},\r\n  selectFileButton: {\r\n    width: \"100%\",\r\n  },\r\n  dialogTitle: {\r\n    paddingBottom: 0,\r\n  },\r\n  listItem: {\r\n    cursor: \"pointer\",\r\n  },\r\n  fileIcon: {\r\n    color: theme.palette.primary.main,\r\n  },\r\n  upButton: {\r\n    marginLeft: -12,\r\n  },\r\n  contentBox: {\r\n    border: \"2px solid rgb(218, 218, 218)\",\r\n    height: 500,\r\n    overflowY: \"auto\",\r\n  },\r\n  resultFileRow: {\r\n    display: \"grid\",\r\n    overflow: \"hidden\",\r\n    width: \"100%\",\r\n    gridTemplateColumns: \"auto 1fr auto\",\r\n    marginTop: 8,\r\n  },\r\n  folderPathText: {\r\n    maxWidth: 200,\r\n    lineHeight: \"60px\",\r\n    marginRight: 5,\r\n    textOverflow: \"ellipsis\",\r\n    whiteSpace: \"nowrap\",\r\n    direction: \"rtl\",\r\n    overflow: \"hidden\",\r\n  },\r\n  extensionDropDown: {\r\n    marginTop: 8,\r\n    marginLeft: 5,\r\n  },\r\n  dialogContent: {\r\n    paddingTop: 0,\r\n    width: 800,\r\n  },\r\n  whiteBalanceCheckbox: {\r\n    marginLeft: 16,\r\n  },\r\n  scanPreview: {\r\n    width: \"100%\",\r\n  },\r\n});\r\n\r\n/**\r\n * dialog window for saving file\r\n */\r\nclass SelectFileDialog extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n    this.state = {\r\n      currentPath: \"\",\r\n      inputIsValid: false,\r\n      fileName: \"\",\r\n      currentFiles: [],\r\n      selectedExtension: props.fileFormats[0],\r\n      whiteBalanceState: false,\r\n    };\r\n    this.updateCurrentFiles(\"\");\r\n    this.lenseParams = {\r\n      label: \"Lense Type\",\r\n      selectedValue: \"select\",\r\n      errorValue: \"select\",\r\n      options: [\r\n        {\r\n          name: \"select\",\r\n          label: \"Select Lense Type\",\r\n        },\r\n        {\r\n          name: \"4x\",\r\n          label: \"4x\",\r\n        },\r\n        {\r\n          name: \"10x\",\r\n          label: \"10x\",\r\n        },\r\n        {\r\n          name: \"20x\",\r\n          label: \"20x\",\r\n        },\r\n        {\r\n          name: \"40x\",\r\n          label: \"40x\",\r\n        },\r\n        {\r\n          name: \"100x\",\r\n          label: \"100x\",\r\n        },\r\n      ],\r\n      onChange: (value) => {\r\n        this.lenseParams.selectedValue = value;\r\n        this.forceUpdate();\r\n      },\r\n    };\r\n    this.adapterParams = {\r\n      label: \"Adapter Type\",\r\n      selectedValue: \"select\",\r\n      errorValue: \"select\",\r\n      options: [\r\n        {\r\n          name: \"select\",\r\n          label: \"Select Adapter Type\",\r\n        },\r\n        {\r\n          name: \"0.65x\",\r\n          label: \"0.65x\",\r\n        },\r\n        {\r\n          name: \"0.63x\",\r\n          label: \"0.63x\",\r\n        },\r\n        {\r\n          name: \"1x\",\r\n          label: \"None\",\r\n        },\r\n      ],\r\n      onChange: (value) => {\r\n        this.adapterParams.selectedValue = value;\r\n        this.forceUpdate();\r\n      },\r\n    };\r\n  }\r\n\r\n  /**\r\n   * when Dialog window opens: update files and\r\n   * check if filename already exists -> update num Time points\r\n   * @param {object} prevProps\r\n   */\r\n  componentDidUpdate = (prevProps) => {\r\n    // if Dialog Window opens:\r\n    if (!prevProps.open && this.props.open) {\r\n      // update Current Files\r\n      this.updateCurrentFiles(this.state.currentPath, () => {\r\n        // update num time points\r\n        const file = this.state.currentFiles.filter((value) => {\r\n          return value.path === this.state.fileName + \".hsasld\";\r\n        });\r\n        if (file.length > 0) {\r\n          this.onListItemClick(file[0]);\r\n        }\r\n      });\r\n    }\r\n  };\r\n\r\n  /**\r\n   * update visible files of selected folder\r\n   * @param {String} path filepath\r\n   * @param {func} callback callback\r\n   */\r\n  updateCurrentFiles = (path, callback) => {\r\n    const { fileFormats } = this.props;\r\n    Backend.walkDir(path, true, (result) => {\r\n      if (fileFormats) {\r\n        result = result.filter((entry) => {\r\n          if (entry.type === \"directory\") return true;\r\n          let pathParts = entry.path.split(\".\");\r\n          let extension = pathParts[pathParts.length - 1].toLowerCase();\r\n          if (fileFormats.indexOf(extension) < 0) {\r\n            return false;\r\n          } else {\r\n            return true;\r\n          }\r\n        });\r\n      }\r\n      this.setState({ currentFiles: result, currentPath: path }, callback);\r\n    });\r\n  };\r\n\r\n  /**\r\n   * if in directory, update folder, else update textfield when clicking on file\r\n   * @param {Object} item\r\n   */\r\n  onListItemClick = (item) => {\r\n    if (item.type === \"directory\") {\r\n      this.updateCurrentFiles(item.path);\r\n    } else {\r\n      this.setState(\r\n        {\r\n          fileName: item.path\r\n            .replace(/^.*[\\\\/]/, \"\")\r\n            .split(\".\")\r\n            .slice(0, -1)\r\n            .join(\".\"),\r\n        },\r\n        () => {\r\n          this.validateFilePath();\r\n        }\r\n      );\r\n    }\r\n  };\r\n\r\n  /**\r\n   * set filename state and validate filepath\r\n   * @param {ActionEvent} e User input in textfield\r\n   */\r\n  onChangeFileName = (e) => {\r\n    this.setState({ fileName: e.target.value }, () => {\r\n      this.validateFilePath();\r\n    });\r\n  };\r\n\r\n  /**\r\n   * assemble [currentpath]/[filename].[extension] if currentpath is available.\r\n   * Else: [filename].[extension]\r\n   */\r\n  validateFilePath = () => {\r\n    let fullFilePath = \"\";\r\n    if (this.state.currentPath === \"\") {\r\n      fullFilePath = this.state.fileName + \".\" + this.state.selectedExtension;\r\n    } else {\r\n      fullFilePath =\r\n        this.state.currentPath +\r\n        \"/\" +\r\n        this.state.fileName +\r\n        \".\" +\r\n        this.state.selectedExtension;\r\n    }\r\n    this.changeFilePath(fullFilePath);\r\n  };\r\n\r\n  /**\r\n   * validate file path and check if file already exists. If so, get timepoints\r\n   * @param {String} fullFilePath Filepath inkl currentPath\r\n   */\r\n  changeFilePath = (fullFilePath) => {\r\n    this.props.scanViewerContext.setState({ fullFilePath });\r\n    const pathParts = fullFilePath.split(\".\");\r\n    const extension = pathParts[pathParts.length - 1].toLowerCase();\r\n    const fileName = fullFilePath\r\n      .replace(/^.*[\\\\/]/, \"\")\r\n      .split(\".\")\r\n      .slice(0, -1)\r\n      .join(\".\");\r\n    const inputIsValid = fileName !== \"\";\r\n    this.setState({ inputIsValid });\r\n\r\n    if (inputIsValid) {\r\n      this.props.scanViewerContext.sendFilePath(fullFilePath);\r\n    }\r\n\r\n    if (extension === \"hsasld\") {\r\n      Backend.getFileMetadata(fullFilePath, (result) => {\r\n        if (result.sizeT) {\r\n          this.setState({ numTimePoints: result.sizeT });\r\n        } else {\r\n          this.setState({ numTimePoints: 0 });\r\n        }\r\n      });\r\n    }\r\n  };\r\n\r\n  handleCancel = () => {\r\n    this.props.onClose();\r\n    this.setState({ whiteBalanceState: false });\r\n    this.props.scanViewerContext.setWhiteBalanceState(false);\r\n  };\r\n\r\n  handleConfirm = () => {\r\n    console.log(\"lenseParams:\", this.lenseParams);\r\n    console.log(\"adapterParams:\", this.adapterParams);\r\n\r\n    this.props.scanViewerContext.setLenseType(this.lenseParams.selectedValue);\r\n    this.props.scanViewerContext.setAdapterType(\r\n      this.adapterParams.selectedValue\r\n    );\r\n    this.props.onConfirm();\r\n    this.setState({ whiteBalanceState: false });\r\n  };\r\n  render() {\r\n    const { classes, fileFormats, open } = this.props;\r\n    const {\r\n      currentFiles,\r\n      currentPath,\r\n      selectedExtension,\r\n      fileName,\r\n      numTimePoints,\r\n      inputIsValid,\r\n      whiteBalanceState,\r\n    } = this.state;\r\n    const { filePath } = this.props.scanViewerContext;\r\n    return (\r\n      <React.Fragment>\r\n        <Dialog maxWidth=\"lg\" open={open} onClose={() => this.props.onClose()}>\r\n          <DialogTitle className={classes.dialogTitle}>\r\n            Select Result WSI File\r\n          </DialogTitle>\r\n          <DialogContent className={classes.dialogContent}>\r\n            <div className={classes.resultFileRow}>\r\n              <div className={classes.folderPathText}>\r\n                {\"/\"}\r\n                {currentPath}\r\n              </div>\r\n              <TextField\r\n                name=\"Textfield\"\r\n                error={!inputIsValid}\r\n                className={classes.resultFileName}\r\n                id=\"standard-basic\"\r\n                label=\"File Name\"\r\n                variant=\"standard\"\r\n                value={fileName}\r\n                onChange={this.onChangeFileName}\r\n              />\r\n              <FormControl className={classes.extensionDropDown} size=\"small\">\r\n                <InputLabel>Extension</InputLabel>\r\n                <Select\r\n                  name=\"SelectExtension\"\r\n                  value={selectedExtension}\r\n                  label=\"Extension\"\r\n                  onChange={(e) =>\r\n                    this.setState({ fileFormat: e.target.value })\r\n                  }\r\n                >\r\n                  {fileFormats.map((fileFormat, idx) => {\r\n                    return (\r\n                      <MenuItem key={idx} value={fileFormat}>\r\n                        .{fileFormat}\r\n                      </MenuItem>\r\n                    );\r\n                  })}\r\n                </Select>\r\n              </FormControl>\r\n            </div>\r\n            <Grid container>\r\n              <Grid item xs={6}>\r\n                <List className={classes.contentBox} dense={true}>\r\n                  {currentPath !== \"\" && (\r\n                    <ListItem>\r\n                      <ListItemIcon>\r\n                        <Tooltip\r\n                          disableInteractive\r\n                          title={`Up to \"${\r\n                            currentPath.substring(\r\n                              0,\r\n                              currentPath.lastIndexOf(\"/\")\r\n                            ) || \"root\"\r\n                          }\"`}\r\n                        >\r\n                          <IconButton\r\n                            className={classes.upButton}\r\n                            onClick={() => {\r\n                              this.updateCurrentFiles(\r\n                                currentPath.substring(\r\n                                  0,\r\n                                  currentPath.lastIndexOf(\"/\")\r\n                                )\r\n                              );\r\n                            }}\r\n                            size=\"large\"\r\n                          >\r\n                            <ArrowUpward />\r\n                          </IconButton>\r\n                        </Tooltip>\r\n                      </ListItemIcon>\r\n                      <ListItemText primary={currentPath} />\r\n                    </ListItem>\r\n                  )}\r\n                  {currentFiles.map((item, idx) => {\r\n                    return (\r\n                      <ListItem\r\n                        key={idx}\r\n                        button\r\n                        className={classes.listItem}\r\n                        onClick={() => this.onListItemClick(item)}\r\n                      >\r\n                        <ListItemIcon>\r\n                          {item.type === \"directory\" ? (\r\n                            <Folder style={{ color: \"#FFE896\" }} />\r\n                          ) : (\r\n                            <Tooltip\r\n                              disableInteractive\r\n                              title={\r\n                                <div\r\n                                  style={{ display: \"inline-block\" }}\r\n                                  key={item.path}\r\n                                >\r\n                                  <div style={{ display: \"inline-block\" }}>\r\n                                    {\r\n                                      <img\r\n                                        style={{\r\n                                          display: \"block\",\r\n                                          background: \"black\",\r\n                                          margin: \"5px\",\r\n                                          objectFit: \"contain\",\r\n                                        }}\r\n                                        width=\"200\"\r\n                                        height=\"200\"\r\n                                        src={\r\n                                          \"/api/project/image_thumbnail?path=\" +\r\n                                          encodeURIComponent(item.path)\r\n                                        }\r\n                                        alt=\"\"\r\n                                      />\r\n                                    }\r\n                                    <div\r\n                                      style={{\r\n                                        width: \"100%\",\r\n                                        textAlign: \"center\",\r\n                                      }}\r\n                                    >\r\n                                      {item.path}\r\n                                    </div>\r\n                                  </div>\r\n                                </div>\r\n                              }\r\n                            >\r\n                              <Image className={classes.fileIcon} />\r\n                            </Tooltip>\r\n                          )}\r\n                        </ListItemIcon>\r\n                        <Tooltip\r\n                          disableInteractive\r\n                          key={idx}\r\n                          title={\r\n                            <div>\r\n                              {item.type === \"directory\" ? (\r\n                                <div>\r\n                                  <div\r\n                                    style={{\r\n                                      width: 80,\r\n                                      display: \"inline-block\",\r\n                                    }}\r\n                                  >\r\n                                    Full Path:{\" \"}\r\n                                  </div>\r\n                                  {item.path}\r\n                                </div>\r\n                              ) : (\r\n                                <div>\r\n                                  <div\r\n                                    style={{\r\n                                      width: 80,\r\n                                      display: \"inline-block\",\r\n                                    }}\r\n                                  >\r\n                                    File Size:{\" \"}\r\n                                  </div>\r\n                                  {item.fileSize}\r\n                                  <br />\r\n                                  <div\r\n                                    style={{\r\n                                      width: 80,\r\n                                      display: \"inline-block\",\r\n                                    }}\r\n                                  >\r\n                                    Creation Date:{\" \"}\r\n                                  </div>\r\n                                  {item.creationTime}\r\n                                </div>\r\n                              )}\r\n                            </div>\r\n                          }\r\n                        >\r\n                          <ListItemText>\r\n                            {item.path.replace(/^.*[\\\\/]/, \"\")}\r\n                          </ListItemText>\r\n                        </Tooltip>\r\n                      </ListItem>\r\n                    );\r\n                  })}\r\n                </List>\r\n              </Grid>\r\n              <Grid item xs={6}>\r\n                <div className={classes.contentBox}>\r\n                  <div className={classes.vignetteRow}>\r\n                    <FormGroup className={classes.whiteBalanceCheckbox}>\r\n                      <FormControlLabel\r\n                        className={classes.checkboxLabel}\r\n                        control={\r\n                          <Checkbox\r\n                            name=\"CheckboxWhiteBalance\"\r\n                            checked={whiteBalanceState === true}\r\n                            onChange={() => {\r\n                              const value =\r\n                                whiteBalanceState === false ? true : false;\r\n                              this.props.scanViewerContext.setWhiteBalanceState(\r\n                                value\r\n                              );\r\n                              this.setState({ whiteBalanceState: value });\r\n                            }}\r\n                          />\r\n                        }\r\n                        label=\"White Balance\"\r\n                      />\r\n                    </FormGroup>\r\n                    <div className={classes.OpticsRow}>\r\n                      <div className={classes.OpticsSelector}>\r\n                        <CustomSelector params={this.lenseParams} />\r\n                        <CustomSelector params={this.adapterParams} />\r\n                      </div>\r\n                      <IconButton\r\n                        className={classes.infoButton}\r\n                        onClick={() =>\r\n                          window.openWarningDialog([\r\n                            \"Set the used lense and adapter magnification.\",\r\n                            \"These values are important for the scale bar.\",\r\n                          ])\r\n                        }\r\n                      >\r\n                        <Info />\r\n                      </IconButton>\r\n                    </div>\r\n                    <div className={classes.scanPreview}>\r\n                      <ScanStream streamKey=\"scan_stream_minimap\" />\r\n                    </div>\r\n                  </div>\r\n                  <Table>\r\n                    <TableBody>\r\n                      <TableRow>\r\n                        <TableCell>File Name:</TableCell>\r\n                        <TableCell>{this.state.fileName}</TableCell>\r\n                      </TableRow>\r\n                      <TableRow>\r\n                        <TableCell>Full Path:</TableCell>\r\n                        <TableCell>\r\n                          {this.state.currentPath +\r\n                            \"/\" +\r\n                            this.state.fileName +\r\n                            \".\" +\r\n                            this.state.selectedExtension}\r\n                        </TableCell>\r\n                      </TableRow>\r\n                      <TableRow>\r\n                        <TableCell>File Status:</TableCell>\r\n                        <TableCell>\r\n                          {numTimePoints > 0\r\n                            ? \"WSI File already exists\"\r\n                            : \"WSI File does not exist\"}\r\n                        </TableCell>\r\n                      </TableRow>\r\n                      {numTimePoints > 0 && (\r\n                        <TableRow>\r\n                          <TableCell>Time Points:</TableCell>\r\n                          <TableCell>{numTimePoints}</TableCell>\r\n                        </TableRow>\r\n                      )}\r\n                      <TableRow>\r\n                        <TableCell>Action on Save:</TableCell>\r\n                        <TableCell>\r\n                          {numTimePoints > 0\r\n                            ? \"Time Point \" +\r\n                              (numTimePoints + 1) +\r\n                              \" will be added\"\r\n                            : \"WSI File will be created\"}\r\n                        </TableCell>\r\n                      </TableRow>\r\n                    </TableBody>\r\n                  </Table>\r\n                  {numTimePoints > 0 && (\r\n                    <img\r\n                      style={{\r\n                        display: \"block\",\r\n                        background: \"black\",\r\n                        margin: \"5px\",\r\n                        objectFit: \"contain\",\r\n                        width: \"100%\",\r\n                      }}\r\n                      src={\r\n                        \"/api/project/image_thumbnail?path=\" +\r\n                        encodeURIComponent(filePath)\r\n                      }\r\n                      alt=\"\"\r\n                    />\r\n                  )}\r\n                </div>\r\n              </Grid>\r\n            </Grid>\r\n          </DialogContent>\r\n          <DialogActions>\r\n            <Button onClick={this.handleCancel} color=\"primary\">\r\n              Cancel\r\n            </Button>\r\n            <Button\r\n              disabled={\r\n                !inputIsValid ||\r\n                this.lenseParams.selectedValue ===\r\n                  this.lenseParams.errorValue ||\r\n                this.adapterParams.selectedValue ===\r\n                  this.adapterParams.errorValue\r\n              }\r\n              onClick={this.handleConfirm}\r\n              variant=\"contained\"\r\n            >\r\n              Confirm\r\n            </Button>\r\n          </DialogActions>\r\n        </Dialog>\r\n      </React.Fragment>\r\n    );\r\n  }\r\n}\r\n\r\nSelectFileDialog.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  scanViewerContext: PropTypes.object.isRequired,\r\n  fileFormats: PropTypes.array.isRequired,\r\n  open: PropTypes.bool.isRequired,\r\n  onClose: PropTypes.func.isRequired,\r\n  onConfirm: PropTypes.func.isRequired,\r\n};\r\n\r\nexport default withScanViewerContext(withStyles(styles)(SelectFileDialog));\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\nimport { Tooltip, IconButton, Divider } from \"@mui/material\";\r\nimport {\r\n  Save,\r\n  Videocam,\r\n  Map,\r\n  GridOn,\r\n  Pause,\r\n  PlayArrow,\r\n  RestartAlt,\r\n  ZoomIn,\r\n  ZoomOut,\r\n  Comment,\r\n  Flare,\r\n  VideogameAsset,\r\n  BlurOn,\r\n  GetApp,\r\n  Publish,\r\n} from \"@mui/icons-material\";\r\nimport CustomSvgIcon from \"../../globalComponents/CustomSvgIcon\";\r\nimport { faExchangeAlt } from \"@fortawesome/free-solid-svg-icons\";\r\nimport { FontAwesomeIcon } from \"@fortawesome/react-fontawesome\";\r\nimport BugReportIcon from \"@mui/icons-material/BugReport\";\r\nimport { withScanViewerContext } from \"../contexts/ScanViewerContext\";\r\nimport SelectFileDialog from \"./SelectFileDialog\";\r\n\r\nconst styles = (theme) => ({\r\n  root: {\r\n    height: \"100%\",\r\n    display: \"grid\",\r\n    overflow: \"hidden\",\r\n    gridTemplateRows: \"1fr auto\",\r\n  },\r\n  toolbarButton: {\r\n    width: 40,\r\n    color: theme.palette.primary.inactive,\r\n  },\r\n  toolbarButtonActive: {\r\n    width: 40,\r\n    color: theme.palette.primary.main,\r\n  },\r\n});\r\n\r\nclass ScanToolBar extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n\r\n    this.state = {\r\n      fileDialogOpen: false,\r\n      mapVisible: true,\r\n      cameraVisible: true,\r\n      gridVisible: false,\r\n      debugDataVisible: false,\r\n      commentsVisible: false,\r\n      automationVisible: false,\r\n    };\r\n    this.showWIPIcons = false;\r\n    window.addEventListener(\"keydown\", this.keyDown);\r\n  }\r\n\r\n  onSave = () => {\r\n    this.setState({ fileDialogOpen: false });\r\n    this.props.scanViewerContext.createWSI();\r\n  };\r\n\r\n  onPlayPause = () => {\r\n    if (this.props.scanViewerContext.slideScanning) {\r\n      if (!this.props.sidebarVisible) {\r\n        this.props.onToggleSidebar();\r\n      }\r\n      this.props.scanViewerContext.changeScanState(\"scan_pause\");\r\n    } else {\r\n      if (this.props.sidebarVisible) {\r\n        this.props.onToggleSidebar();\r\n      }\r\n      this.props.scanViewerContext.changeScanState(\"scan_start\");\r\n    }\r\n  };\r\n\r\n  /**\r\n   * Handle keyboard shortcuts\r\n   * @param {ActionEvent} e Keyboard keys\r\n   */\r\n  keyDown = (e) => {\r\n    let elem = null;\r\n    if (e.ctrlKey) {\r\n      switch (e.key) {\r\n        case \"s\":\r\n          elem = document.getElementById(\"saveButtonScanToolBar\");\r\n          break;\r\n        case \"+\": //ctrl +\r\n          elem = document.getElementById(\"zoomInScanToolBar\");\r\n          break;\r\n        case \"-\": // ctrl -\r\n          elem = document.getElementById(\"zoomOutScanToolBar\");\r\n          break;\r\n        case \"=\": //ctrl digit[0]\r\n          elem = document.getElementById(\"zoomResetScanToolBar\");\r\n          break;\r\n        case \"0\": //ctrl numpad[0]\r\n          elem = document.getElementById(\"zoomResetScanToolBar\");\r\n          break;\r\n      }\r\n    } else {\r\n      return;\r\n    }\r\n    if (elem !== null) {\r\n      elem.click();\r\n      e.preventDefault();\r\n    }\r\n  };\r\n\r\n  render() {\r\n    const { classes, onToggleSidebar } = this.props;\r\n    const {\r\n      mapVisible,\r\n      cameraVisible,\r\n      gridVisible,\r\n      debugDataVisible,\r\n      commentsVisible,\r\n      automationVisible,\r\n      focusPeakingOn,\r\n      changeScanState,\r\n      slideScanning,\r\n      sideBarContent,\r\n    } = this.props.scanViewerContext;\r\n    const context = this.props.scanViewerContext;\r\n    return (\r\n      <div className={classes.root}>\r\n        <div>\r\n          {slideScanning ? (\r\n            <Tooltip disableInteractive placement=\"left\" title=\"Pause scan\">\r\n              <IconButton\r\n                className={classes.toolbarButtonActive}\r\n                onClick={this.onPlayPause}\r\n                size=\"large\"\r\n              >\r\n                <Pause />\r\n              </IconButton>\r\n            </Tooltip>\r\n          ) : (\r\n            <Tooltip disableInteractive placement=\"left\" title=\"Start scan\">\r\n              <IconButton\r\n                className={classes.toolbarButtonActive}\r\n                onClick={this.onPlayPause}\r\n                size=\"large\"\r\n              >\r\n                <PlayArrow />\r\n              </IconButton>\r\n            </Tooltip>\r\n          )}\r\n          <Divider />\r\n          <Tooltip\r\n            disableInteractive\r\n            placement=\"left\"\r\n            title={cameraVisible ? \"Hide Camera Stream\" : \"Show Camera Stream\"}\r\n          >\r\n            <IconButton\r\n              className={\r\n                cameraVisible\r\n                  ? classes.toolbarButtonActive\r\n                  : classes.toolbarButton\r\n              }\r\n              onClick={context.toggleCamera}\r\n              size=\"large\"\r\n            >\r\n              <Videocam />\r\n            </IconButton>\r\n          </Tooltip>\r\n          <Tooltip\r\n            disableInteractive\r\n            placement=\"left\"\r\n            title={mapVisible ? \"Hide Minimap\" : \"Show Minimap\"}\r\n          >\r\n            <IconButton\r\n              className={\r\n                mapVisible ? classes.toolbarButtonActive : classes.toolbarButton\r\n              }\r\n              onClick={context.toggleMinimap}\r\n              size=\"large\"\r\n            >\r\n              <Map />\r\n            </IconButton>\r\n          </Tooltip>\r\n          <Tooltip\r\n            disableInteractive\r\n            placement=\"left\"\r\n            title={gridVisible ? \"Hide Grid\" : \"Show Grid\"}\r\n          >\r\n            <IconButton\r\n              className={\r\n                gridVisible\r\n                  ? classes.toolbarButtonActive\r\n                  : classes.toolbarButton\r\n              }\r\n              onClick={context.toggleGrid}\r\n              size=\"large\"\r\n            >\r\n              <GridOn />\r\n            </IconButton>\r\n          </Tooltip>\r\n          <Tooltip\r\n            disableInteractive\r\n            placement=\"left\"\r\n            title={debugDataVisible ? \"Hide Debug Data\" : \"Show Debug Data\"}\r\n          >\r\n            <IconButton\r\n              className={\r\n                debugDataVisible\r\n                  ? classes.toolbarButtonActive\r\n                  : classes.toolbarButton\r\n              }\r\n              onClick={context.toggleDebugData}\r\n              size=\"large\"\r\n            >\r\n              <BugReportIcon />\r\n            </IconButton>\r\n          </Tooltip>\r\n          <Tooltip\r\n            disableInteractive\r\n            placement=\"left\"\r\n            title={commentsVisible ? \"Hide Comments\" : \"Show Comments\"}\r\n          >\r\n            <IconButton\r\n              className={\r\n                commentsVisible\r\n                  ? classes.toolbarButtonActive\r\n                  : classes.toolbarButton\r\n              }\r\n              onClick={context.toggleComments}\r\n              size=\"large\"\r\n            >\r\n              <Comment />\r\n            </IconButton>\r\n          </Tooltip>\r\n          {this.showWIPIcons &&\r\n            ((\r\n              <Tooltip\r\n                disableInteractive\r\n                placement=\"left\"\r\n                title={\r\n                  sideBarContent === \"fluorescence\"\r\n                    ? \"Brightfield\"\r\n                    : \"Fluorescence\"\r\n                }\r\n              >\r\n                <IconButton\r\n                  className={\r\n                    sideBarContent === \"fluorescence\"\r\n                      ? classes.toolbarButtonActive\r\n                      : classes.toolbarButton\r\n                  }\r\n                  onClick={context.toggleFluorescence}\r\n                  size=\"large\"\r\n                >\r\n                  <Flare />\r\n                </IconButton>\r\n              </Tooltip>\r\n            ),\r\n            (\r\n              <Tooltip\r\n                disableInteractive\r\n                placement=\"left\"\r\n                title={\"automated Microscope\"}\r\n              >\r\n                <IconButton\r\n                  className={\r\n                    automationVisible\r\n                      ? classes.toolbarButtonActive\r\n                      : classes.toolbarButton\r\n                  }\r\n                  onClick={context.toggleAutomation}\r\n                  size=\"large\"\r\n                >\r\n                  <VideogameAsset />\r\n                </IconButton>\r\n              </Tooltip>\r\n            ),\r\n            (\r\n              <Tooltip\r\n                disableInteractive\r\n                placement=\"left\"\r\n                title={\"Focus Peaking\"}\r\n              >\r\n                <IconButton\r\n                  className={\r\n                    focusPeakingOn\r\n                      ? classes.toolbarButtonActive\r\n                      : classes.toolbarButton\r\n                  }\r\n                  onClick={context.toggleFocusPeaking}\r\n                  size=\"large\"\r\n                >\r\n                  <BlurOn />\r\n                </IconButton>\r\n              </Tooltip>\r\n            ))}\r\n        </div>\r\n        <div>\r\n          <Divider />\r\n          <Tooltip\r\n            disableInteractive\r\n            placement=\"left\"\r\n            title=\"Zoom In [ctrl]+[+]\"\r\n          >\r\n            <span>\r\n              <IconButton\r\n                id=\"zoomInScanToolBar\"\r\n                className={classes.toolbarButton}\r\n                onClick={context.zoomIn}\r\n                size=\"large\"\r\n              >\r\n                <ZoomIn className={classes.toolbarButtonIcon} />\r\n              </IconButton>\r\n            </span>\r\n          </Tooltip>\r\n          <Tooltip\r\n            disableInteractive\r\n            placement=\"left\"\r\n            title=\"Zoom Out [ctrl]+[-]\"\r\n          >\r\n            <span>\r\n              <IconButton\r\n                id=\"zoomOutScanToolBar\"\r\n                className={classes.toolbarButton}\r\n                onClick={context.zoomOut}\r\n                size=\"large\"\r\n              >\r\n                <ZoomOut className={classes.toolbarButtonIcon} />\r\n              </IconButton>\r\n            </span>\r\n          </Tooltip>\r\n          <Tooltip\r\n            disableInteractive\r\n            placement=\"left\"\r\n            title=\"Zoom Reset [ctrl]+[0]\"\r\n          >\r\n            <span>\r\n              <IconButton\r\n                id=\"zoomResetScanToolBar\"\r\n                className={classes.toolbarButton}\r\n                onClick={context.zoomReset}\r\n                size=\"large\"\r\n              >\r\n                <CustomSvgIcon\r\n                  name=\"ResetZoomIcon\"\r\n                  width=\"22.86\"\r\n                  height=\"23.8\"\r\n                  stroke=\"currentColor\"\r\n                  vertAlign=\"-4px\"\r\n                />\r\n              </IconButton>\r\n            </span>\r\n          </Tooltip>\r\n          <Divider />\r\n          <Tooltip disableInteractive placement=\"left\" title=\"Reset scan\">\r\n            <IconButton\r\n              className={classes.toolbarButton}\r\n              onClick={() => changeScanState(\"scan_reset\")}\r\n              size=\"large\"\r\n            >\r\n              <RestartAlt />\r\n            </IconButton>\r\n          </Tooltip>\r\n          <Divider />\r\n          <Tooltip disableInteractive placement=\"left\" title=\"Toggle sidebar\">\r\n            <IconButton\r\n              className={classes.toolbarButton}\r\n              onClick={onToggleSidebar}\r\n              size=\"medium\"\r\n            >\r\n              <FontAwesomeIcon icon={faExchangeAlt} />\r\n            </IconButton>\r\n          </Tooltip>\r\n          {this.showWIPIcons &&\r\n            ((<Divider />),\r\n            (\r\n              <Tooltip disableInteractive placement=\"left\" title=\"Import WIP\">\r\n                <IconButton\r\n                  className={classes.toolbarButtonActive}\r\n                  onClick={() =>\r\n                    window.openResponseDialog(\r\n                      \"Do you really want to import a project? The current project will be deleted.\",\r\n                      (response) => {\r\n                        if (response) {\r\n                          this.props.scanViewerContext.importWIP();\r\n                        }\r\n                      }\r\n                    )\r\n                  }\r\n                  size=\"large\"\r\n                >\r\n                  <GetApp />\r\n                </IconButton>\r\n              </Tooltip>\r\n            ),\r\n            (\r\n              <Tooltip disableInteractive placement=\"left\" title=\"Export WIP\">\r\n                <IconButton\r\n                  className={classes.toolbarButtonActive}\r\n                  onClick={() => this.props.scanViewerContext.exportWIP()}\r\n                  size=\"large\"\r\n                >\r\n                  <Publish />\r\n                </IconButton>\r\n              </Tooltip>\r\n            ))}\r\n          <Divider />\r\n          <Tooltip\r\n            disableInteractive\r\n            placement=\"left\"\r\n            title=\"Save scan into file\"\r\n          >\r\n            <IconButton\r\n              className={classes.toolbarButtonActive}\r\n              id=\"saveButtonScanToolBar\"\r\n              onClick={() => this.setState({ fileDialogOpen: true })}\r\n              size=\"large\"\r\n            >\r\n              <Save />\r\n            </IconButton>\r\n          </Tooltip>\r\n          <SelectFileDialog\r\n            open={this.state.fileDialogOpen}\r\n            onConfirm={this.onSave}\r\n            onClose={() => this.setState({ fileDialogOpen: false })}\r\n            fileFormats={[\"hsasld\"]}\r\n          />\r\n        </div>\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nScanToolBar.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  scanViewerContext: PropTypes.object.isRequired,\r\n  onToggleSidebar: PropTypes.func.isRequired,\r\n  sidebarVisible: PropTypes.bool,\r\n};\r\n\r\nexport default withScanViewerContext(withStyles(styles)(ScanToolBar));\r\n","import React from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\nimport {\r\n  Grid,\r\n  FormControl,\r\n  TextField,\r\n  Typography,\r\n  Slider,\r\n  IconButton,\r\n} from \"@mui/material\";\r\n\r\nimport InfoIcon from \"@mui/icons-material/Info\";\r\n\r\nconst styles = {\r\n  root: {\r\n    display: \"grid\",\r\n    gridTemplateColumns: \"1fr auto\",\r\n  },\r\n  sliderContainer: {\r\n    margin: 0,\r\n    width: \"100%\",\r\n    marginTop: -16,\r\n  },\r\n  input: {\r\n    width: 55,\r\n  },\r\n  iconButton: {\r\n    height: 40,\r\n    marginTop: 16,\r\n  },\r\n};\r\n\r\nclass CustomSlider extends React.Component {\r\n  render() {\r\n    const { params, classes } = this.props;\r\n    return (\r\n      <div className={classes.root}>\r\n        <div>\r\n          <FormControl key={params.key} component=\"fieldset\" fullWidth>\r\n            <Typography gutterBottom>{params.label} </Typography>\r\n            <Grid\r\n              className={classes.sliderContainer}\r\n              container\r\n              spacing={2}\r\n              alignItems=\"center\"\r\n            >\r\n              <Grid item xs>\r\n                <Slider\r\n                  min={this.props.min}\r\n                  max={this.props.max}\r\n                  step={params.step}\r\n                  value={params.value}\r\n                  onChange={(e) => {\r\n                    params.onSliderChange(e.target.value);\r\n                  }}\r\n                  onDoubleClick={params.onDoubleClick}\r\n                  onChangeCommitted={params.onSliderchangeComitted}\r\n                />\r\n              </Grid>\r\n              <Grid item>\r\n                <TextField\r\n                  className={classes.input}\r\n                  name=\"Textfield\"\r\n                  variant=\"standard\"\r\n                  size=\"small\"\r\n                  value={params.value}\r\n                  margin=\"dense\"\r\n                  error={params.error}\r\n                  onChange={(e) => {\r\n                    params.onChange(parseFloat(e.target.value));\r\n                  }}\r\n                  type=\"number\"\r\n                  inputProps={{\r\n                    step: params.step,\r\n                    min: this.props.min,\r\n                    max: this.props.max,\r\n                    role: \"numberInput\",\r\n                  }}\r\n                />\r\n              </Grid>\r\n            </Grid>\r\n          </FormControl>\r\n        </div>\r\n        <IconButton\r\n          className={classes.iconButton}\r\n          onClick={() => window.openWarningDialog(params.info)}\r\n        >\r\n          <InfoIcon />\r\n        </IconButton>\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nCustomSlider.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  params: PropTypes.object.isRequired,\r\n  min: PropTypes.number,\r\n  max: PropTypes.number,\r\n};\r\n\r\nexport default withStyles(styles)(CustomSlider);\r\n","import React, { Component } from \"react\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport { withScanViewerContext } from \"../contexts/ScanViewerContext\";\r\nimport CustomSlider from \"../../globalComponents/CustomSlider\";\r\nimport {\r\n  Button,\r\n  Checkbox,\r\n  FormControlLabel,\r\n  FormGroup,\r\n  IconButton,\r\n  Tooltip,\r\n  TextField,\r\n} from \"@mui/material\";\r\n\r\nimport {\r\n  PlayArrow,\r\n  Stop,\r\n  Info,\r\n  Home,\r\n  ArrowLeft,\r\n  ArrowRight,\r\n  ArrowDropUp,\r\n  ArrowDropDown,\r\n  ArrowUpward,\r\n  LockOpen,\r\n  Link,\r\n  ArrowDownward,\r\n  CenterFocusStrong,\r\n  HdrAuto,\r\n  LinkOff,\r\n} from \"@mui/icons-material\";\r\n\r\nconst styles = {\r\n  root: {\r\n    padding: 20,\r\n    height: \"100%\",\r\n    overflowY: \"auto\",\r\n  },\r\n  OpticsRow: {\r\n    display: \"grid\",\r\n    gridTemplateColumns: \"1fr auto auto\",\r\n    width: \"100%\",\r\n    marginTop: 10,\r\n  },\r\n  OpticsSelector: {\r\n    display: \"grid\",\r\n    gridTemplateColumns: \"1fr 1fr\",\r\n    width: \"100%\",\r\n  },\r\n  vignetteRow: {\r\n    display: \"grid\",\r\n    gridTemplateColumns: \"1fr auto auto\",\r\n    width: \"100%\",\r\n    marginTop: 10,\r\n    marginBottom: 10,\r\n  },\r\n  textButton: {\r\n    lineHeight: \"30px\",\r\n  },\r\n  checkboxLabel: {\r\n    margin: \"0px !important\",\r\n  },\r\n  textfieldNumber: {\r\n    width: \"90px\",\r\n  },\r\n  featurePointRow: {\r\n    display: \"grid\",\r\n    gridTemplateColumns: \"1fr auto auto\",\r\n    width: \"100%\",\r\n    marginTop: 15,\r\n  },\r\n  infoButton: {\r\n    height: 40,\r\n    marginTop: 16,\r\n  },\r\n  automationButton: {\r\n    height: 40,\r\n    width: 40,\r\n    margin: 10,\r\n  },\r\n  automationButtonContainer: {\r\n    width: 60,\r\n    display: \"inline-block\",\r\n  },\r\n  automationTextfieldContainer: {\r\n    width: 155,\r\n    display: \"inline-block\",\r\n  },\r\n  automationLongTextfieldContainer: {\r\n    width: 360,\r\n    display: \"inline-block\",\r\n  },\r\n  automationTextfield: {\r\n    height: 40,\r\n    margin: 15,\r\n  },\r\n};\r\n\r\n/**\r\n * Class to render Camera Settings, read them and send them to backend\r\n */\r\nclass ScanMicroscopeSettings extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n\r\n    this.state = {\r\n      activeTab: 0,\r\n      vignetteState: \"\",\r\n      // checkedFeaturePoint: false, // for DEBUG\r\n      // numFeaturePoints: 3, // for DEBUG\r\n    };\r\n\r\n    // sets the colors (RGB) to the chosen white balance\r\n    this.lightSourceParams = {\r\n      label: \"Light Source\",\r\n      selectedValue: \"Daylight6500K\",\r\n      info: [\r\n        \"Sets the light source preset.\",\r\n        \"The colors in the image will be corrected so that they are appropriate for the selected light source.\",\r\n      ],\r\n      options: [\r\n        {\r\n          name: \"Off\",\r\n          label: \"Off\",\r\n        },\r\n        {\r\n          name: \"Daylight5000K\",\r\n          label: \"Daylight (5000 Kelvin)\",\r\n        },\r\n        {\r\n          name: \"Daylight6500K\",\r\n          label: \"Daylight (6500 Kelvin)\",\r\n        },\r\n        {\r\n          name: \"Tungsten2800K\",\r\n          label: \"Tungsten (2800 Kelvin)\",\r\n        },\r\n      ],\r\n      onChange: (value) => {\r\n        this.lightSourceParams.selectedValue = value;\r\n        if (value === \"Off\") {\r\n          this.sliderParams.red.value = 1.0;\r\n          this.sliderParams.green.value = 1.0;\r\n          this.sliderParams.blue.value = 1.0;\r\n        } else if (value === \"Daylight5000K\") {\r\n          this.sliderParams.red.value = 1.57349;\r\n          this.sliderParams.green.value = 1.0;\r\n          this.sliderParams.blue.value = 2.2749;\r\n        } else if (value === \"Daylight6500K\") {\r\n          this.sliderParams.red.value = 1.82056;\r\n          this.sliderParams.green.value = 1.0;\r\n          this.sliderParams.blue.value = 1.94189;\r\n        } else if (value === \"Tungsten2800K\") {\r\n          this.sliderParams.red.value = 1.06372;\r\n          this.sliderParams.green.value = 1.0;\r\n          this.sliderParams.blue.value = 4.17261;\r\n        }\r\n        this.forceUpdate();\r\n        this.sendParams();\r\n      },\r\n    };\r\n\r\n    this.sliderParams = {\r\n      frameRate: {\r\n        type: \"Slider\",\r\n        label: \"Frame Rate\",\r\n        info: [\r\n          \"Acquisition frame rate of the camera in frames per second.\",\r\n          \"Double click to reset value to default.\",\r\n        ],\r\n        value: 30,\r\n        minKey: \"cameraMinFramerate\",\r\n        maxKey: \"cameraMaxFramerate\",\r\n        step: 1,\r\n        standardValue: 30,\r\n      },\r\n      exposureTime: {\r\n        type: \"Slider\",\r\n        label: \"Exposure Time\",\r\n        info: [\r\n          \"Value of the shutter speed the camera uses.\",\r\n          \"The higher the shutter speed, the darker the image \",\r\n        ],\r\n        value: 250,\r\n        minKey: \"cameraMinExposureTime\",\r\n        maxKey: \"cameraMaxExposureTime\",\r\n        standardValue: 250,\r\n      },\r\n      gain: {\r\n        type: \"Slider\",\r\n        label: \"Gain\",\r\n        info: [\r\n          \"Value of the currently selected gain in dB.\",\r\n          \"Double click to reset value to default.\",\r\n        ],\r\n        value: 0.1,\r\n        minKey: \"cameraMinGain\",\r\n        maxKey: \"cameraMaxGain\",\r\n        step: 0.1,\r\n        standardValue: 0.1,\r\n      },\r\n      gamma: {\r\n        type: \"Slider\",\r\n        label: \"Gamma\",\r\n        info: [\r\n          \"Gamma correction to be applied.\",\r\n          \"Gamma correction allows you to optimize the brightness of acquired images for display on a monitor.\",\r\n          \"Double click to reset value to default.\",\r\n        ],\r\n        value: 1.0,\r\n        minKey: \"cameraMinGamma\",\r\n        maxKey: \"cameraMaxGamma\",\r\n        step: 0.01,\r\n        standardValue: 1.0,\r\n      },\r\n      blackValue: {\r\n        type: \"Slider\",\r\n        label: \"Black Value\",\r\n        info: [\r\n          \"Black level value to be applied to the currently selected sensor tap.\",\r\n          \"Double click to reset value to default.\",\r\n        ],\r\n        value: 0,\r\n        minKey: \"cameraMinBlackValue\",\r\n        maxKey: \"cameraMaxBlackValue\",\r\n        step: 0.1,\r\n        standardValue: 0,\r\n      },\r\n      red: {\r\n        type: \"Slider\",\r\n        label: \"Red\",\r\n        info: [\r\n          \"Sets the light source preset.\",\r\n          \"The colors in the image will be corrected so that they are appropriate for the red light source.\",\r\n          \"Double click to reset value to default.\",\r\n        ],\r\n        value: 1.82,\r\n        minKey: \"cameraColorMin\",\r\n        maxKey: \"cameraColorMax\",\r\n        step: 0.01,\r\n      },\r\n      green: {\r\n        type: \"Slider\",\r\n        label: \"Green\",\r\n        info: [\r\n          \"Sets the light source preset.\",\r\n          \"The colors in the image will be corrected so that they are appropriate for the green light source.\",\r\n          \"Double click to reset value to default.\",\r\n        ],\r\n        value: 1.0,\r\n        minKey: \"cameraColorMin\",\r\n        maxKey: \"cameraColorMax\",\r\n        step: 0.01,\r\n      },\r\n      blue: {\r\n        type: \"Slider\",\r\n        label: \"Blue\",\r\n        info: [\r\n          \"Sets the light source preset.\",\r\n          \"The colors in the image will be corrected so that they are appropriate for the blue light source.\",\r\n          \"Double click to reset value to default.\",\r\n        ],\r\n        value: 1.94,\r\n        minKey: \"cameraColorMin\",\r\n        maxKey: \"cameraColorMax\",\r\n        step: 0.01,\r\n      },\r\n    };\r\n\r\n    this.sendParams();\r\n    window.addEventListener(\"keydown\", this.keyDown);\r\n  }\r\n  /**\r\n   * create json with important values and send to backend\r\n   */\r\n  sendParams() {\r\n    let paramJson = {\r\n      lightSource: this.lightSourceParams.selectedValue,\r\n      pixelSizeCamera: this.props.scanViewerContext.pixelSizeCamera,\r\n    };\r\n    for (const [key, value] of Object.entries(this.sliderParams)) {\r\n      paramJson[key] = value.value;\r\n    }\r\n    // Backend.configureMicroscopeCamera(paramJson);\r\n    this.props.scanViewerContext.changeMicroscopeParams(paramJson);\r\n  }\r\n\r\n  /**\r\n   * Handle keyboard shortcuts\r\n   * @param {ActionEvent} e Keyboard keys\r\n   */\r\n  keyDown = (e) => {\r\n    let elem = null;\r\n    if (e.ctrlKey) {\r\n      switch (e.key) {\r\n        case \"ArrowLeft\": // ctrl + left\r\n          elem = document.getElementById(\"xMinusButton\");\r\n          break;\r\n        case \"ArrowRight\": // ctrl + right\r\n          elem = document.getElementById(\"xPlusButton\");\r\n          break;\r\n        case \"ArrowUp\": // ctrl + up\r\n          elem = document.getElementById(\"yPlusButton\");\r\n          break;\r\n        case \"ArrowDown\": // ctrl + down\r\n          elem = document.getElementById(\"yMinusButton\");\r\n          break;\r\n        case \"PageUp\": // ctrl + page up\r\n          elem = document.getElementById(\"zPlusButton\");\r\n          break;\r\n        case \"PageDown\": // ctrl + page down\r\n          elem = document.getElementById(\"zMinusButton\");\r\n          break;\r\n        case \"a\": // ctrl + a\r\n          elem = document.getElementById(\"autoFocusButton\");\r\n          break;\r\n        default:\r\n          break;\r\n      }\r\n    } else {\r\n      return;\r\n    }\r\n\r\n    if (elem !== null) {\r\n      elem.click();\r\n      e.preventDefault();\r\n    }\r\n  };\r\n\r\n  render() {\r\n    const { classes, scanViewerContext } = this.props;\r\n    const {\r\n      vignetteState,\r\n      // checkedFeaturePoint, numFeaturePoints // for DEBUG\r\n    } = this.state;\r\n    const { automationVisible, automatedMicroscopeStatus } =\r\n      this.props.scanViewerContext;\r\n    return (\r\n      <div className={classes.root}>\r\n        <h2>Settings</h2>\r\n        {/* not in use at the moment */}\r\n        {/* <CustomSelector params={this.lightSourceParams} /> */}\r\n        {Object.entries(this.sliderParams).map(([key, value], idx) => {\r\n          let params = value;\r\n          params.onChange = (value) => {\r\n            this.sliderParams[key].value = value;\r\n            this.forceUpdate();\r\n            if (\r\n              value >= scanViewerContext[params.minKey] &&\r\n              value <= scanViewerContext[params.maxKey]\r\n            ) {\r\n              params.error = false;\r\n              this.sendParams();\r\n            } else {\r\n              params.error = true;\r\n            }\r\n          };\r\n          params.onSliderChange = (value) => {\r\n            this.sliderParams[key].value = value;\r\n            this.forceUpdate();\r\n            this.sendParams();\r\n          };\r\n          params.onDoubleClick = () => {\r\n            if (this.sliderParams[key].label === \"Red\") {\r\n              switch (this.lightSourceParams.selectedValue) {\r\n                case \"Off\":\r\n                  this.sliderParams[key].value = 1.0;\r\n                  break;\r\n                case \"Daylight5000K\":\r\n                  this.sliderParams[key].value = 1.57349;\r\n                  break;\r\n                case \"Daylight6500K\":\r\n                  this.sliderParams[key].value = 1.82056;\r\n                  break;\r\n                case \"Tungsten2800K\":\r\n                  this.sliderParams[key].value = 1.06372;\r\n                  break;\r\n              }\r\n            } else if (this.sliderParams[key].label === \"Green\") {\r\n              this.sliderParams[key].value = 1.0;\r\n            } else if (this.sliderParams[key].label === \"Blue\") {\r\n              switch (this.lightSourceParams.selectedValue) {\r\n                case \"Off\":\r\n                  this.sliderParams[key].value = 1.0;\r\n                  break;\r\n                case \"Daylight5000K\":\r\n                  this.sliderParams[key].value = 2.2749;\r\n                  break;\r\n                case \"Daylight6500K\":\r\n                  this.sliderParams[key].value = 1.94189;\r\n                  break;\r\n                case \"Tungsten2800K\":\r\n                  this.sliderParams[key].value = 4.17261;\r\n                  break;\r\n              }\r\n            } else {\r\n              this.sliderParams[key].value =\r\n                this.sliderParams[key].standardValue;\r\n            }\r\n            this.forceUpdate();\r\n            this.sendParams();\r\n          };\r\n          return (\r\n            <CustomSlider\r\n              key={idx}\r\n              params={params}\r\n              min={this.props.scanViewerContext[params.minKey]}\r\n              max={this.props.scanViewerContext[params.maxKey]}\r\n            />\r\n          );\r\n        })}\r\n\r\n        <div className={classes.vignetteRow}>\r\n          <FormGroup>\r\n            <FormControlLabel\r\n              className={classes.checkboxLabel}\r\n              control={\r\n                <Checkbox\r\n                  name=\"CheckboxVignette\"\r\n                  disabled={\r\n                    !(\r\n                      vignetteState === \"ready\" || vignetteState === \"filtering\"\r\n                    )\r\n                  }\r\n                  checked={vignetteState === \"filtering\"}\r\n                  onChange={() => {\r\n                    const value =\r\n                      vignetteState === \"ready\" ? \"filtering\" : \"ready\";\r\n                    scanViewerContext.setVignetteState(value);\r\n                    this.setState({ vignetteState: value });\r\n                  }}\r\n                />\r\n              }\r\n              label=\"Filter Vignette\"\r\n            />\r\n          </FormGroup>\r\n          <Button\r\n            className={classes.textButton}\r\n            disabled={vignetteState === \"filtering\"}\r\n            onClick={() => {\r\n              const value =\r\n                vignetteState === \"\" || vignetteState === \"ready\"\r\n                  ? \"recording\"\r\n                  : \"ready\";\r\n              scanViewerContext.setVignetteState(value);\r\n              this.setState({ vignetteState: value });\r\n            }}\r\n          >\r\n            {vignetteState === \"recording\" ? <Stop /> : <PlayArrow />}{\" \"}\r\n            {vignetteState === \"recording\"\r\n              ? \"Stop Recording\"\r\n              : \"Record Vignette\"}\r\n          </Button>\r\n          <IconButton\r\n            className={classes.iconButton}\r\n            onClick={() =>\r\n              window.openWarningDialog([\r\n                \"To filter the vignette, a vignette must be recorded first:\",\r\n                \"1. Navigate to a mostly white position.\",\r\n                \"2. Record Vignette.\",\r\n                \"3. Navigate around until shown vignette is not changing anymore.\",\r\n                \"4. Stop Recording.\",\r\n                \"5. Filter Vignette is now possible.\",\r\n              ])\r\n            }\r\n          >\r\n            <Info />\r\n          </IconButton>\r\n        </div>\r\n        <div>\r\n          <TextField\r\n            name=\"Textfield\"\r\n            className={classes.automationTextfield}\r\n            style={{ width: \"100%\" }}\r\n            onKeyPress={(e) => {\r\n              if (e.key === \"Enter\") {\r\n                this.props.scanViewerContext.changeImportParams({\r\n                  action: \"filepath\",\r\n                  data: e.target.value,\r\n                });\r\n              }\r\n            }}\r\n            label=\"import Filepath\"\r\n            defaultValue=\"C:\\Users\\philgrun\\Documents\\HSA-Web\\Source\\HSA-KIT\\modules\\hsa\\2022-11-30T17-27-40_wip-project.npy\"\r\n            InputLabelProps={{\r\n              shrink: true,\r\n            }}\r\n          />\r\n        </div>\r\n        <div hidden={!automationVisible}>\r\n          <div className={classes.automationButtonContainer}>\r\n            <Tooltip\r\n              placement=\"left\"\r\n              title={\r\n                automatedMicroscopeStatus === \"notConnected\"\r\n                  ? \"Connect\"\r\n                  : \"Exit\"\r\n              }\r\n            >\r\n              <IconButton\r\n                className={classes.automationButton}\r\n                onClick={() => {\r\n                  automatedMicroscopeStatus === \"notConnected\"\r\n                    ? scanViewerContext.useAutomatedMicroscope(\"connect\")\r\n                    : scanViewerContext.useAutomatedMicroscope(\"exit\");\r\n                }}\r\n              >\r\n                {automatedMicroscopeStatus === \"notConnected\" ? (\r\n                  <Link />\r\n                ) : (\r\n                  <LinkOff />\r\n                )}\r\n              </IconButton>\r\n            </Tooltip>\r\n          </div>\r\n          <div className={classes.automationButtonContainer}></div>\r\n          <div\r\n            className={classes.automationButtonContainer}\r\n            style={{ background: \"lightgray\" }}\r\n          >\r\n            <Tooltip placement=\"left\" title=\"Y+\">\r\n              <IconButton\r\n                id=\"yPlusButton\"\r\n                className={classes.automationButton}\r\n                onClick={() => {\r\n                  scanViewerContext.useAutomatedMicroscope(\"y_up\");\r\n                }}\r\n              >\r\n                <ArrowDropUp />\r\n              </IconButton>\r\n            </Tooltip>\r\n          </div>\r\n          <div className={classes.automationButtonContainer}></div>\r\n          <div className={classes.automationButtonContainer}>\r\n            <Tooltip placement=\"left\" title=\"Z+\">\r\n              <IconButton\r\n                id=\"zPlusButton\"\r\n                className={classes.automationButton}\r\n                onClick={() => {\r\n                  scanViewerContext.useAutomatedMicroscope(\"z_up\");\r\n                }}\r\n              >\r\n                <ArrowUpward />\r\n              </IconButton>\r\n            </Tooltip>\r\n          </div>\r\n          <div className={classes.automationButtonContainer}>\r\n            <Tooltip placement=\"left\" title=\"Auto Scan\">\r\n              <IconButton\r\n                className={classes.automationButton}\r\n                onClick={() => {\r\n                  scanViewerContext.useAutomatedMicroscope(\"autoscan\");\r\n                }}\r\n              >\r\n                <HdrAuto />\r\n              </IconButton>\r\n            </Tooltip>\r\n          </div>\r\n          <br />\r\n          <div className={classes.automationButtonContainer}>\r\n            <Tooltip placement=\"left\" title=\"Unlock\">\r\n              <IconButton\r\n                className={classes.automationButton}\r\n                onClick={() => {\r\n                  scanViewerContext.useAutomatedMicroscope(\"unlock\");\r\n                }}\r\n              >\r\n                <LockOpen />\r\n              </IconButton>\r\n            </Tooltip>\r\n          </div>\r\n          <div\r\n            className={classes.automationButtonContainer}\r\n            style={{ background: \"lightgray\" }}\r\n          >\r\n            <Tooltip placement=\"left\" title=\"X-\">\r\n              <IconButton\r\n                id=\"xMinusButton\"\r\n                className={classes.automationButton}\r\n                onClick={() => {\r\n                  scanViewerContext.useAutomatedMicroscope(\"x_left\");\r\n                }}\r\n              >\r\n                <ArrowLeft />\r\n              </IconButton>\r\n            </Tooltip>\r\n          </div>\r\n          <div\r\n            className={classes.automationButtonContainer}\r\n            style={{ background: \"lightgray\" }}\r\n          >\r\n            <Tooltip placement=\"left\" title=\"Y-\">\r\n              <IconButton\r\n                id=\"yMinusButton\"\r\n                className={classes.automationButton}\r\n                onClick={() => {\r\n                  scanViewerContext.useAutomatedMicroscope(\"y_down\");\r\n                }}\r\n              >\r\n                <ArrowDropDown />\r\n              </IconButton>\r\n            </Tooltip>\r\n          </div>\r\n          <div\r\n            className={classes.automationButtonContainer}\r\n            style={{ background: \"lightgray\" }}\r\n          >\r\n            <Tooltip placement=\"left\" title=\"X+\">\r\n              <IconButton\r\n                id=\"xPlusButton\"\r\n                className={classes.automationButton}\r\n                onClick={() => {\r\n                  scanViewerContext.useAutomatedMicroscope(\"x_right\");\r\n                }}\r\n              >\r\n                <ArrowRight />\r\n              </IconButton>\r\n            </Tooltip>\r\n          </div>\r\n          <div className={classes.automationButtonContainer}>\r\n            <Tooltip placement=\"left\" title=\"Z-\">\r\n              <IconButton\r\n                id=\"zMinusButton\"\r\n                className={classes.automationButton}\r\n                onClick={() => {\r\n                  scanViewerContext.useAutomatedMicroscope(\"z_down\");\r\n                }}\r\n              >\r\n                <ArrowDownward />\r\n              </IconButton>\r\n            </Tooltip>\r\n          </div>\r\n          <div className={classes.automationButtonContainer}>\r\n            <Tooltip placement=\"left\" title=\"Auto Focus\">\r\n              <IconButton\r\n                id=\"autoFocusButton\"\r\n                className={classes.automationButton}\r\n                onClick={() => {\r\n                  scanViewerContext.useAutomatedMicroscope(\"autofocus\");\r\n                }}\r\n              >\r\n                <CenterFocusStrong />\r\n              </IconButton>\r\n            </Tooltip>\r\n          </div>\r\n          <br />\r\n          <div className={classes.automationButtonContainer}>\r\n            <Tooltip placement=\"left\" title=\"Home\">\r\n              <IconButton\r\n                id=\"homeButton\"\r\n                className={classes.automationButton}\r\n                onClick={() => {\r\n                  scanViewerContext.useAutomatedMicroscope(\"home\");\r\n                }}\r\n              >\r\n                <Home />\r\n              </IconButton>\r\n            </Tooltip>\r\n          </div>\r\n          <div className={classes.automationButtonContainer}>\r\n            <Tooltip placement=\"left\" title=\"Calibration\">\r\n              <Button\r\n                id=\"calibrationButton\"\r\n                className={classes.automationButton}\r\n                onClick={() => {\r\n                  scanViewerContext.useAutomatedMicroscope(\"calibration\");\r\n                }}\r\n              >\r\n                Calibration\r\n              </Button>\r\n            </Tooltip>\r\n          </div>\r\n          <br />\r\n          <div className={classes.automationTextfieldContainer}>\r\n            <TextField\r\n              name=\"Textfield\"\r\n              onKeyPress={(e) => {\r\n                if (e.key === \"Enter\") {\r\n                  scanViewerContext.useAutomatedMicroscope(\r\n                    \"change_x_stepsize\",\r\n                    {\r\n                      stepsize: e.target.value,\r\n                    }\r\n                  );\r\n                }\r\n              }}\r\n              className={classes.automationTextfield}\r\n              label=\"X Stepsize [mm]\"\r\n              type=\"number\"\r\n              inputProps={{\r\n                step: \"0.1\",\r\n              }}\r\n              InputLabelProps={{\r\n                shrink: true,\r\n              }}\r\n              defaultValue=\"0.4\"\r\n            />\r\n          </div>\r\n          <div className={classes.automationTextfieldContainer}>\r\n            <TextField\r\n              name=\"Textfield\"\r\n              onKeyPress={(e) => {\r\n                if (e.key === \"Enter\") {\r\n                  scanViewerContext.useAutomatedMicroscope(\r\n                    \"change_x_velocity\",\r\n                    {\r\n                      velocity: e.target.value,\r\n                    }\r\n                  );\r\n                }\r\n              }}\r\n              className={classes.automationTextfield}\r\n              label=\"X Velocity [mm/min]\"\r\n              type=\"number\"\r\n              InputLabelProps={{\r\n                shrink: true,\r\n              }}\r\n              defaultValue=\"10\"\r\n            />\r\n          </div>\r\n          <br />\r\n          <div className={classes.automationTextfieldContainer}>\r\n            <TextField\r\n              name=\"Textfield\"\r\n              onKeyPress={(e) => {\r\n                if (e.key === \"Enter\") {\r\n                  scanViewerContext.useAutomatedMicroscope(\r\n                    \"change_y_stepsize\",\r\n                    {\r\n                      stepsize: e.target.value,\r\n                    }\r\n                  );\r\n                }\r\n              }}\r\n              className={classes.automationTextfield}\r\n              label=\"Y Stepsize [mm]\"\r\n              type=\"number\"\r\n              inputProps={{\r\n                step: \"0.1\",\r\n              }}\r\n              InputLabelProps={{\r\n                shrink: true,\r\n              }}\r\n              defaultValue=\"0.5\"\r\n            />\r\n          </div>\r\n          <div className={classes.automationTextfieldContainer}>\r\n            <TextField\r\n              name=\"Textfield\"\r\n              onKeyPress={(e) => {\r\n                if (e.key === \"Enter\") {\r\n                  scanViewerContext.useAutomatedMicroscope(\r\n                    \"change_y_velocity\",\r\n                    {\r\n                      velocity: e.target.value,\r\n                    }\r\n                  );\r\n                }\r\n              }}\r\n              className={classes.automationTextfield}\r\n              label=\"Y Velocity [mm/min]\"\r\n              type=\"number\"\r\n              InputLabelProps={{\r\n                shrink: true,\r\n              }}\r\n              defaultValue=\"10\"\r\n            />\r\n          </div>\r\n          <div className={classes.automationTextfieldContainer}>\r\n            <TextField\r\n              name=\"Textfield\"\r\n              onKeyPress={(e) => {\r\n                if (e.key === \"Enter\") {\r\n                  scanViewerContext.useAutomatedMicroscope(\r\n                    \"change_z_stepsize\",\r\n                    {\r\n                      stepsize: e.target.value,\r\n                    }\r\n                  );\r\n                }\r\n              }}\r\n              className={classes.automationTextfield}\r\n              label=\"Z Stepsize [mm]\"\r\n              type=\"number\"\r\n              inputProps={{\r\n                step: \"0.05\",\r\n              }}\r\n              InputLabelProps={{\r\n                shrink: true,\r\n              }}\r\n              defaultValue=\"0.1\"\r\n            />\r\n          </div>\r\n          <div className={classes.automationTextfieldContainer}>\r\n            <TextField\r\n              name=\"Textfield\"\r\n              onKeyPress={(e) => {\r\n                if (e.key === \"Enter\") {\r\n                  scanViewerContext.useAutomatedMicroscope(\r\n                    \"change_z_velocity\",\r\n                    {\r\n                      velocity: e.target.value,\r\n                    }\r\n                  );\r\n                }\r\n              }}\r\n              className={classes.automationTextfield}\r\n              label=\"Z Velocity [mm/min]\"\r\n              type=\"number\"\r\n              InputLabelProps={{\r\n                shrink: true,\r\n              }}\r\n              defaultValue=\"20\"\r\n            />\r\n          </div>\r\n          <br />\r\n          <div className={classes.automationLongTextfieldContainer}>\r\n            <TextField\r\n              name=\"Textfield\"\r\n              className={classes.automationTextfield}\r\n              style={{ width: \"100%\" }}\r\n              onKeyPress={(e) => {\r\n                if (e.key === \"Enter\") {\r\n                  scanViewerContext.useAutomatedMicroscope(\"execute_gcode\", {\r\n                    gcode: e.target.value,\r\n                  });\r\n                }\r\n              }}\r\n              label=\"G-code\"\r\n              InputLabelProps={{\r\n                shrink: true,\r\n              }}\r\n            />\r\n          </div>\r\n          <br />\r\n          <div className={classes.automationLongTextfieldContainer}>\r\n            <TextField\r\n              name=\"Textfield\"\r\n              style={{ margin: 15, width: \"100%\" }}\r\n              multiline\r\n              rows={18}\r\n              disabled\r\n              value=\"Hier könnte Ihre Werbung stehen. \r\n              aca1920-40uc: 1,2mm y entspricht der Bildhöhe\r\n              1,8 mm x enspricht der Bildbreite\"\r\n              label=\"Executed code\"\r\n              InputLabelProps={{\r\n                shrink: true,\r\n              }}\r\n            />\r\n          </div>\r\n          <br />\r\n          <div>\r\n            <Button\r\n              style={{ left: 10 }}\r\n              onClick={() => {\r\n                scanViewerContext.useAutomatedMicroscope(\"show_config\");\r\n              }}\r\n            >\r\n              show Configuration\r\n            </Button>\r\n          </div>\r\n        </div>\r\n        {/* for DEBUG use: */}\r\n        {/* <div className={classes.featurePointRow}>\r\n          <FormGroup row={true}>\r\n            <FormControlLabel\r\n              className={classes.checkboxLabel}\r\n              control={\r\n                <Checkbox\r\n                  name=\"CheckboxFeaturePoint\"\r\n                  value={checkedFeaturePoint}\r\n                  onChange={(e) => {\r\n                    const checked = e.target.checked;\r\n                    this.setState({ checkedFeaturePoint: checked });\r\n                    scanViewerContext.setFeaturePointsState(\r\n                      checked,\r\n                      numFeaturePoints\r\n                    );\r\n                  }}\r\n                />\r\n              }\r\n              label=\"Show Feature Points\"\r\n            />\r\n          </FormGroup>\r\n\r\n          <TextField\r\n            name=\"Textfield\"\r\n            className={classes.textfieldNumber}\r\n            label=\"Point Count\"\r\n            type=\"number\"\r\n            size=\"small\"\r\n            value={numFeaturePoints}\r\n            InputProps={{ inputProps: { max: 5, min: 1 } }}\r\n            InputLabelProps={{\r\n              shrink: true,\r\n            }}\r\n            onChange={(e) => {\r\n              const numberFeaturePoints = e.target.value;\r\n              this.setState({ numFeaturePoints: numberFeaturePoints });\r\n              scanViewerContext.setFeaturePointsState(\r\n                checkedFeaturePoint,\r\n                numberFeaturePoints\r\n              );\r\n            }}\r\n          />\r\n\r\n          <IconButton\r\n            className={classes.iconButton}\r\n            onClick={() =>\r\n              window.openWarningDialog([\r\n                \"Activates feature points and sets the number of feature points to be displayed.\",\r\n                \"Feature points are points, that the computer uses for orientation. The Scanner needs them to compare the position of different images.\",\r\n                \"This function is mainly for development use.\",\r\n              ])\r\n            }\r\n          >\r\n            <Info />\r\n          </IconButton>\r\n        </div> */}\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nScanMicroscopeSettings.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  scanViewerContext: PropTypes.object.isRequired,\r\n};\r\n\r\nexport default withScanViewerContext(\r\n  withStyles(styles)(ScanMicroscopeSettings)\r\n);\r\n","import React, { Component } from \"react\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\nimport PropTypes from \"prop-types\";\r\nimport {\r\n  Typography,\r\n  TextField,\r\n  Tooltip,\r\n  IconButton,\r\n  List,\r\n  ListItem,\r\n  ListItemButton,\r\n  Button,\r\n} from \"@mui/material\";\r\nimport { withScanViewerContext } from \"../contexts/ScanViewerContext\";\r\nimport SketchColorPicker from \"../../common/components/SketchColorPicker\";\r\nimport { Add, Delete } from \"@mui/icons-material\";\r\nimport { getRandomColor } from \"../../common/utils/RandomColorGenerator\";\r\n\r\nconst styles = (theme) => ({\r\n  root: {\r\n    padding: 20,\r\n    height: \"100%\",\r\n    overflowY: \"auto\",\r\n  },\r\n  ChannelTextField: {\r\n    paddingBottom: 0,\r\n    paddingTop: 0,\r\n    paddingLeft: 0,\r\n    width: 345,\r\n  },\r\n  buttonSelected: {\r\n    width: \"100%\",\r\n    color: \"black\",\r\n    background: theme.palette.selected.main,\r\n    borderRadius: 0,\r\n  },\r\n  buttonUnselected: {\r\n    width: \"100%\",\r\n    color: \"black\",\r\n    borderRadius: 0,\r\n    background: \"white\",\r\n  },\r\n  listItemSelected: {\r\n    background: theme.palette.selected.main,\r\n  },\r\n  listItemUnselected: {\r\n    background: \"white\",\r\n  },\r\n});\r\n\r\n/**\r\n * class to render fluorescence card and handle interaction\r\n */\r\nclass ScanFluorescence extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n\r\n    this.state = {\r\n      channelName: \"\",\r\n      selectedIndex: -1,\r\n    };\r\n  }\r\n  addChannel = () => {\r\n    const newItem = {\r\n      label: this.state.channelName,\r\n      color: getRandomColor(),\r\n    };\r\n    this.props.scanViewerContext.channels.push(newItem);\r\n    this.emitParams(\"add_fl_channel\");\r\n    this.setState({ channelName: \"\" });\r\n    this.setState({\r\n      selectedIndex: this.props.scanViewerContext.channels.length - 1,\r\n    });\r\n  };\r\n\r\n  selectChannel = (index) => {\r\n    this.setState({ selectedIndex: index }, () => {\r\n      this.emitParams(\"change_fl_channel\");\r\n    });\r\n  };\r\n\r\n  deleteChannel = (channel, index) => {\r\n    window.openResponseDialog(\r\n      \"Do you really want to delete \" + channel.label + \"?\",\r\n      (response) => {\r\n        if (response) {\r\n          this.props.scanViewerContext.channels.splice(index, 1);\r\n          this.emitParams(\"delete_fl_channel\");\r\n          this.setState({\r\n            selectedIndex: this.props.scanViewerContext.channels.length - 1,\r\n          });\r\n        }\r\n      }\r\n    );\r\n  };\r\n\r\n  emitParams = (state) => {\r\n    let paramJson = {\r\n      state: state,\r\n      selectedChannel: this.state.selectedIndex,\r\n      channels: this.props.scanViewerContext.channels,\r\n    };\r\n    this.props.scanViewerContext.updateFluorescenceParams(\r\n      \"scan_message\",\r\n      paramJson\r\n    );\r\n  };\r\n\r\n  render() {\r\n    const { selectedIndex, channelName } = this.state;\r\n    const { classes } = this.props;\r\n\r\n    return (\r\n      <div className={classes.root}>\r\n        <h2>Scans</h2>\r\n        <Button\r\n          className={\r\n            selectedIndex < 0\r\n              ? classes.buttonSelected\r\n              : classes.buttonUnselected\r\n          }\r\n          size=\"large\"\r\n          onClick={() => this.selectChannel(-1)}\r\n        >\r\n          Brightfield\r\n        </Button>\r\n        <Typography variant=\"h6\">\r\n          {\"Channels (\" + this.props.scanViewerContext.channels.length + \"):\"}\r\n        </Typography>\r\n        <List style={{ overflowX: \"hidden\" }}>\r\n          {this.props.scanViewerContext.channels.map((channel, index) => (\r\n            <ListItemButton\r\n              className={\r\n                selectedIndex === index\r\n                  ? classes.listItemSelected\r\n                  : classes.listItemUnselected\r\n              }\r\n              key={index}\r\n              onClick={() => this.selectChannel(index)}\r\n            >\r\n              <TextField\r\n                name=\"Textfield\"\r\n                className={classes.ChannelTextField}\r\n                label=\"channel name\"\r\n                variant=\"standard\"\r\n                value={channel.label}\r\n                error={channel.label === \"\"}\r\n                onChange={(e) => {\r\n                  channel.label = e.target.value;\r\n                  this.forceUpdate();\r\n                }}\r\n                onKeyDown={(e) => {\r\n                  if (e.key === \"Enter\" && e.target.value !== \"\") {\r\n                    channel.label = e.target.value;\r\n                    this.forceUpdate();\r\n                  }\r\n                }}\r\n              />\r\n              <SketchColorPicker\r\n                color={channel.color}\r\n                handleChange={(color) => {\r\n                  channel.color = color;\r\n                  this.forceUpdate();\r\n                }}\r\n              />\r\n              <Tooltip disableInteractive title=\"Delete channel\">\r\n                <IconButton\r\n                  onClick={() => {\r\n                    this.deleteChannel(channel, index);\r\n                  }}\r\n                  size=\"large\"\r\n                >\r\n                  <Delete />\r\n                </IconButton>\r\n              </Tooltip>\r\n            </ListItemButton>\r\n          ))}\r\n          <ListItem>\r\n            <TextField\r\n              name=\"Textfield\"\r\n              className={classes.ChannelTextField}\r\n              label=\"Channel Name\"\r\n              variant=\"standard\"\r\n              value={channelName}\r\n              onChange={(e) => {\r\n                this.setState({ channelName: e.target.value });\r\n              }}\r\n              onKeyDown={(e) => {\r\n                if (e.key === \"Enter\" && channelName !== \"\") {\r\n                  this.addChannel();\r\n                }\r\n              }}\r\n            />\r\n            <Tooltip disableInteractive title=\"Add new channel\">\r\n              <span>\r\n                <IconButton\r\n                  disabled={channelName === \"\"}\r\n                  onClick={() => {\r\n                    this.addChannel();\r\n                  }}\r\n                  size=\"large\"\r\n                >\r\n                  <Add />\r\n                </IconButton>\r\n              </span>\r\n            </Tooltip>\r\n          </ListItem>\r\n        </List>\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nScanFluorescence.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  scanViewerContext: PropTypes.object.isRequired,\r\n};\r\n\r\nexport default withScanViewerContext(withStyles(styles)(ScanFluorescence));\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n\r\nimport ScanRenderer from \"./components/ScanRenderer\";\r\nimport ScanToolBar from \"./components/ScanToolBar\";\r\nimport ScanMicroscopeSettings from \"./components/ScanMicroscopeSettings\";\r\nimport { withScanViewerContext } from \"./contexts/ScanViewerContext\";\r\nimport ScanFluorescence from \"./components/ScanFluorescence\";\r\n\r\nconst styles = {\r\n  root: {\r\n    overflow: \"hidden\",\r\n    position: \"relative\",\r\n    width: \"100%\",\r\n    height: \"100%\",\r\n    display: \"grid\",\r\n  },\r\n  rendererContainer: {\r\n    overflow: \"hidden\",\r\n    background: \"d3d3d3\",\r\n  },\r\n  toolBarContainer: {\r\n    background: \"white\",\r\n    borderLeft: \"5px solid #ebebeb\",\r\n    borderRight: \"5px solid #ebebeb\",\r\n  },\r\n  sideBarContainer: {\r\n    background: \"#fffff\",\r\n    overflow: \"hidden\",\r\n  },\r\n};\r\n\r\nclass ScanViewer extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n\r\n    this.state = {\r\n      sidebarVisible: true,\r\n    };\r\n  }\r\n\r\n  onToggleSidebar = () => {\r\n    if (this.state.sidebarVisible) {\r\n      const w = this.props.scanViewerContext.w + 436;\r\n      const h = this.props.scanViewerContext.h;\r\n      this.props.scanViewerContext.setScanRendererSize(w, h);\r\n    } else {\r\n      const w = this.props.scanViewerContext.w - 436;\r\n      const h = this.props.scanViewerContext.h;\r\n      this.props.scanViewerContext.setScanRendererSize(w, h);\r\n    }\r\n    this.setState({ sidebarVisible: !this.state.sidebarVisible });\r\n  };\r\n\r\n  render() {\r\n    const { classes } = this.props;\r\n    const { streamReady, sideBarContent } = this.props.scanViewerContext;\r\n    return (\r\n      <div\r\n        className={classes.root}\r\n        style={{\r\n          gridTemplateColumns: this.state.sidebarVisible\r\n            ? \"1fr 50px 436px\"\r\n            : \"1fr 50px 0px\",\r\n        }}\r\n      >\r\n        <div className={classes.rendererContainer}>\r\n          {streamReady && <ScanRenderer />}\r\n        </div>\r\n        <div className={classes.toolBarContainer}>\r\n          <ScanToolBar\r\n            onToggleSidebar={this.onToggleSidebar}\r\n            sidebarVisible={this.state.sidebarVisible}\r\n          />\r\n        </div>\r\n        <div className={classes.sideBarContainer}>\r\n          {sideBarContent === \"fluorescence\" ? (\r\n            <ScanFluorescence />\r\n          ) : (\r\n            <ScanMicroscopeSettings />\r\n          )}\r\n        </div>\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nScanViewer.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  scanViewerContext: PropTypes.object.isRequired,\r\n};\r\n\r\nexport default withScanViewerContext(withStyles(styles)(ScanViewer));\r\n","import React, { Component } from \"react\";\r\n\r\nimport withStyles from '@mui/styles/withStyles';\r\n\r\nimport {\r\n  Grid,\r\n  Card,\r\n  CardContent,\r\n  Checkbox,\r\n  FormControl,\r\n  FormControlLabel\r\n} from \"@mui/material\";\r\n\r\n//import { Role } from \"../common/utils\";\r\n//import { authenticationService } from \"../common/services\";\r\n\r\n//const tabUrls = [\"/settings/\", \"/settings/admin\"];\r\n\r\nconst styles = {\r\n  root: {\r\n    background: \"#EEEEEE\"\r\n  },\r\n  paper: {\r\n    padding: 20,\r\n    display: \"flex\",\r\n    justifyContent: \"center\",\r\n    alignItems: \"center\"\r\n  }\r\n};\r\n\r\nclass SettingsPage extends Component {\r\n  state = {};\r\n\r\n  render() {\r\n    //const { classes } = this.props;\r\n    //const currentUser = authenticationService.currentUserValue;\r\n    return (\r\n      <Grid style={styles.paper} item xs={12}>\r\n        <Card>\r\n          <CardContent>\r\n            <h1>Preferences</h1>\r\n            <FormControl component=\"fieldset\" fullWidth>\r\n              {\r\n                <FormControlLabel\r\n                  control={\r\n                    <Checkbox\r\n                      color=\"primary\"\r\n                      checked={false}\r\n                      onChange={e => {\r\n                        console.log(\"e\", e)\r\n                        //onChange(!includeBaseROI);\r\n                        //this.setState({ includeBaseROI: !includeBaseROI });\r\n                      }}\r\n                    />\r\n                  }\r\n                  label=\"Update on slider move\"\r\n                />\r\n              }\r\n            </FormControl>\r\n          </CardContent>\r\n        </Card>\r\n      </Grid>\r\n    );\r\n  }\r\n}\r\n\r\nexport default withStyles(styles)(SettingsPage);\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport * as echarts from \"echarts\";\r\n\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n\r\nconst styles = () => ({\r\n  root: {\r\n    position: \"relative\",\r\n    height: \"100%\",\r\n  },\r\n  topContainer: {\r\n    height: \"100%\",\r\n    width: \"100%\",\r\n    overflow: \"hidden\",\r\n  },\r\n  toolBarBorder: {\r\n    position: \"absolute\",\r\n    top: 0,\r\n    right: 40,\r\n    height: \"100%\",\r\n    width: 3,\r\n    background: \"#EBEBEB\",\r\n  },\r\n});\r\n\r\nclass ELineChart extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n    this.state = {\r\n      chartRef: React.createRef(),\r\n    };\r\n  }\r\n\r\n  updateDimensions = () => {\r\n    if (this.props.chart) this.props.chart.resize();\r\n  };\r\n\r\n  componentDidMount = async () => {\r\n    await this.initChart();\r\n    switch (this.props.mainChartDataShown) {\r\n      case \"raw_spectra\":\r\n        this.props.showRawSpectra();\r\n        break;\r\n\r\n      case \"analysis_results\":\r\n        this.props.showAnalysisResults();\r\n        break;\r\n\r\n      default:\r\n        this.props.requestData(\"init\");\r\n    }\r\n  };\r\n\r\n  initChart = async () => {\r\n    let chartDom = this.state.chartRef.current;\r\n    //prevent context menu (right click) => so delete can be used\r\n    chartDom.addEventListener(\"contextmenu\", (event) => {\r\n      event.preventDefault();\r\n    });\r\n\r\n    let myChart = echarts.init(chartDom, { renderer: \"svg\" });\r\n    this.props.setChart(myChart);\r\n  };\r\n\r\n  render() {\r\n    const { classes } = this.props;\r\n    return (\r\n      <div className={classes.root}>\r\n        <div className={classes.topContainer} ref={this.state.chartRef} />\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nELineChart.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  project: PropTypes.object.isRequired,\r\n  chart: PropTypes.object,\r\n  setChart: PropTypes.func,\r\n  onSave: PropTypes.func,\r\n  requestData: PropTypes.func,\r\n  showRawSpectra: PropTypes.func,\r\n  showAnalysisResults: PropTypes.func,\r\n  mainChartDataShown: PropTypes.string,\r\n};\r\n\r\nexport default withStyles(styles)(ELineChart);\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nconst SpectraViewerContext = React.createContext();\r\n\r\n/**\r\n * Allow other classes to use the SpectraViewer context with withSpectraViewer().\r\n * @param {*} Component The class using the context.\r\n * @returns The Component wrapped inside the SpectraViewer.\r\n */\r\nexport const withSpectraViewer = (Component) => {\r\n  const WrappedComponent = (props) => (\r\n    <SpectraViewerContext.Consumer>\r\n      {(context) => <Component {...props} spectraViewer={context} />}\r\n    </SpectraViewerContext.Consumer>\r\n  );\r\n\r\n  WrappedComponent.displayName = `withSpectraViewer(${\r\n    Component.displayName || Component.name || \"Component\"\r\n  })`;\r\n\r\n  return WrappedComponent;\r\n};\r\n\r\nclass SpectraViewerProvider extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n\r\n    this.state = {\r\n      selectedSpectrum: 0,\r\n      areas: [],\r\n      operationSets: [[[\"scores\", 1]]],\r\n      maxScores: 0,\r\n      useSavedCalcs: true,\r\n      rawSpectra: [], // Permanently save spectra in frontend once loaded\r\n      rawSpectraLoaded: false,\r\n      pcas: [], // Permanently save pcas in frontend once loaded, only cahnge on update\r\n      pcaOrder: \"asc\", // The order in which the PCAs are sorted\r\n      selectedPca: null,\r\n      selectedPcaId: null,\r\n      focusedPca: {\r\n        info: null,\r\n        scores: null,\r\n        approximations: null,\r\n      }, // The pca which is currently being focused in analysis. Includes spectra both before and after trimming and preprocessing.\r\n      analysisResults: [], // Permanently save results of analysis with focussed pca, only change on update\r\n      analysisResultsLoaded: false,\r\n      selectedPcaScore: 0,\r\n      selectedProcessedSpectrum: 0,\r\n      currentlyShownData: null,\r\n      ratedSpectra: [],\r\n      models: [], // AI Models provided\r\n      selectedModelIdx: null,\r\n      selectedModelName: null,\r\n      passingCriteria: [],\r\n      passingCriteria_idx: null,\r\n      passingCriteria_min: 0.99,\r\n      passingCriteria_max: 1.0,\r\n      spectraPredictionSettings: [], // Format: {substance: \"\", concentration: 0.0}\r\n    };\r\n  }\r\n\r\n  /**\r\n   * Allows to set state of context from outside the class\r\n   * @param {*} object Stateobject to be set.\r\n   * @param {function} callback Function to be called after state has been updated.\r\n   */\r\n  setContextState = (object, callback) => {\r\n    this.setState(object, callback);\r\n  };\r\n\r\n  /**\r\n   * Saves all areas to state. Also assigns each sub-area a reference.\r\n   * @param {array} areas\r\n   */\r\n  updateAreas = (areas) => {\r\n    this.setState({\r\n      areas: areas.map((area) => {\r\n        area.refs = [React.createRef(), React.createRef()];\r\n        return area;\r\n      }),\r\n    });\r\n  };\r\n\r\n  /**\r\n   * Toggles the status of useSavedCalcs on or off.\r\n   */\r\n  toggleSavedCalcs = () => {\r\n    this.setState({\r\n      useSavedCalcs: !this.state.useSavedCalcs,\r\n    });\r\n  };\r\n\r\n  /**\r\n   * Ensure that not too many scores can be chosen.\r\n   * Should no spectra be visible, all are used for pca.\r\n   */\r\n  setMaxScores = () => {\r\n    let availableSamples = 0;\r\n    availableSamples = this.state.rawSpectra.filter((el) => el.checked).length;\r\n    this.setState({\r\n      maxScores:\r\n        availableSamples === 0\r\n          ? this.state.rawSpectra.length - 1\r\n          : availableSamples - 1,\r\n    });\r\n  };\r\n\r\n  /**\r\n   * Sort the pcas by a value from the result in ascending or descending order\r\n   * @param {string} valueToSortBy The key used to sort the pcas\r\n   * @param {string} order  \"asc\" or \"desc\" for ascending or descending order respectively\r\n   */\r\n  sortPCAs = (valueToSortBy, order = \"desc\") => {\r\n    // Sort PCAs in descending order by R² value\r\n    let temp_pcas = this.state.pcas.sort((a, b) => {\r\n      return b.result[valueToSortBy] - a.result[valueToSortBy];\r\n    });\r\n    // Invert array if decending order is wanted\r\n    if (order === \"asc\") {\r\n      temp_pcas.reverse();\r\n    }\r\n    // replace with sorted PCAs\r\n    this.setState({ pcas: temp_pcas, pcaOrder: order });\r\n  };\r\n\r\n  render() {\r\n    return (\r\n      <SpectraViewerContext.Provider\r\n        value={{\r\n          ...this.state,\r\n          setState: this.setContextState,\r\n          updateAreas: this.updateAreas,\r\n          setMaxScores: this.setMaxScores,\r\n          toggleSavedCalcs: this.toggleSavedCalcs,\r\n          sortPCAs: this.sortPCAs,\r\n        }}\r\n      >\r\n        {this.props.children}\r\n      </SpectraViewerContext.Provider>\r\n    );\r\n  }\r\n}\r\n\r\nSpectraViewerProvider.propTypes = {\r\n  children: PropTypes.element,\r\n};\r\n\r\nexport default SpectraViewerProvider;\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport withStyles from \"@mui/styles/withStyles\";\r\nimport {\r\n  Table,\r\n  TableBody,\r\n  TableCell,\r\n  TableContainer,\r\n  TableHead,\r\n  TableRow,\r\n  Paper,\r\n  Input,\r\n  Button,\r\n} from \"@mui/material\";\r\n\r\nimport { withSpectraViewer } from \"../contexts/SpectraViewerContext\";\r\n\r\nconst styles = () => ({\r\n  root: {\r\n    position: \"relative\",\r\n    height: \"100%\",\r\n    overflow: \"auto\",\r\n  },\r\n  paperContainer: {\r\n    margin: 10,\r\n  },\r\n  table: {},\r\n  applyButton: {\r\n    margin: 10,\r\n    width: \"calc(100% - 20px)\",\r\n  },\r\n});\r\n\r\nclass FileParamForm extends Component {\r\n  /**\r\n   * Updates the input fields of the file parameters.\r\n   * @param {int} index Position of spectrum in array of spectra.\r\n   * @param {string} paramName Key of value to edit.\r\n   * @param {string} value New value.\r\n   */\r\n  onFileParamChange = (index, paramName, value) => {\r\n    let fileParams = this.props.fileParams.map((fileParam, idx) => {\r\n      if (idx === index) {\r\n        fileParam = JSON.parse(JSON.stringify(fileParam));\r\n        fileParam[paramName] = value\r\n          .trim()\r\n          .split(\";\")\r\n          .map((e) => e.trim());\r\n        return fileParam;\r\n      } else {\r\n        return fileParam;\r\n      }\r\n    });\r\n\r\n    this.props.spectraViewer.setState({ useSavedCalcs: false });\r\n    this.props.onUpdateFileParams(fileParams);\r\n  };\r\n\r\n  /**\r\n   * Validate input data, save project and continue to main window.\r\n   * @returns {} Stay in screen on unvalidated input data\r\n   */\r\n  onApply = () => {\r\n    let error = false;\r\n    let fileParams = this.props.fileParams.map((fp) => {\r\n      // Clean up input\r\n      if (typeof fp.subName === \"string\") {\r\n        fp.subName = fp.subName\r\n          .trim()\r\n          .split(\";\")\r\n          .map((e) => e.trim());\r\n      }\r\n      if (typeof fp.subName === \"string\") {\r\n        fp.concentration = fp.concentration\r\n          .trim()\r\n          .split(\";\")\r\n          .map((e) => e.trim());\r\n      }\r\n\r\n      // Remove empty entries\r\n      fp.subName = fp.subName.filter((e) => e === 0 || e);\r\n      fp.concentration = fp.concentration.filter((e) => e === 0 || e);\r\n\r\n      // Each substance must have exactly one concentration\r\n      if (fp.subName.length !== fp.concentration.length) {\r\n        error = true;\r\n        window.showErrorSnackbar(\r\n          fp.fileName + \": Mismatch of substance and concentration count.\"\r\n        );\r\n        // Highlight errorneous entries\r\n        fp.error = error;\r\n        return fp;\r\n      }\r\n\r\n      // All spectra must have an assigend name\r\n      if (!fp.subName || fp.subName.length === 0) {\r\n        error = true;\r\n        // Highlight errorneous entries\r\n        fp.error = error;\r\n        window.showErrorSnackbar(fp.fileName + \": missing substance name.\");\r\n        return fp;\r\n      }\r\n\r\n      // All spectra must have an assigend concentration for each substance\r\n      let concentrationsOk = true;\r\n      fp.concentration = fp.concentration.map((concentr) => {\r\n        // Allow for 0.0 and 0,0 input values\r\n        let tmp = isNaN(concentr)\r\n          ? parseFloat(concentr.replace(\",\", \".\").replace(\" \", \"\"))\r\n          : concentr;\r\n\r\n        if (isNaN(tmp)) {\r\n          concentrationsOk = false;\r\n          window.showErrorSnackbar(\r\n            `${fp.fileName}: Invalid input value, concentration \"${concentr}\" must be a number between 0 and 100.`\r\n          );\r\n          return concentr;\r\n        }\r\n        concentr = tmp;\r\n\r\n        if (concentr < 0 || concentr > 100) {\r\n          concentrationsOk = false;\r\n          window.showErrorSnackbar(\r\n            `${fp.fileName}: Concentration must be between 0 and 100 %, was ${concentr}.`\r\n          );\r\n          return concentr;\r\n        }\r\n\r\n        return concentr;\r\n      });\r\n      if (!concentrationsOk) {\r\n        error = true;\r\n        fp.error = error;\r\n        return fp;\r\n      }\r\n      // Passed all tests\r\n      fp.error = false;\r\n      return fp;\r\n    });\r\n\r\n    this.props.onUpdateFileParams(fileParams);\r\n    if (error) {\r\n      return;\r\n    }\r\n\r\n    this.props.save();\r\n    this.props.setInitialized(true);\r\n  };\r\n\r\n  render() {\r\n    const { classes, fileParams } = this.props;\r\n    return (\r\n      <div className={classes.root}>\r\n        <Paper className={classes.paperContainer}>\r\n          <TableContainer component={Paper}>\r\n            <Table className={classes.table} aria-label=\"simple table\">\r\n              <TableHead>\r\n                <TableRow>\r\n                  <TableCell>File</TableCell>\r\n                  <TableCell>\r\n                    Substance Name <br /> Multiple semicolon-separated entries\r\n                    possible\r\n                  </TableCell>\r\n                  <TableCell>\r\n                    Concentration (%)\r\n                    <br /> Multiple semicolon-separated entries possible\r\n                  </TableCell>\r\n                </TableRow>\r\n              </TableHead>\r\n              <TableBody>\r\n                {fileParams.map((fileParam, idx) => (\r\n                  <TableRow key={idx}>\r\n                    <TableCell component=\"th\" scope=\"row\">\r\n                      {fileParam.fileName}\r\n                    </TableCell>\r\n                    <TableCell>\r\n                      <Input\r\n                        placeholder=\"Substance Name(s)\"\r\n                        style={{ width: \"100%\" }}\r\n                        value={fileParam.subName.join(\"; \")}\r\n                        onChange={(e) => {\r\n                          this.onFileParamChange(\r\n                            idx,\r\n                            \"subName\",\r\n                            e.target.value\r\n                          );\r\n                        }}\r\n                        error={fileParam.error}\r\n                      />\r\n                    </TableCell>\r\n                    <TableCell>\r\n                      <Input\r\n                        placeholder=\"Concentration(s) (%)\"\r\n                        style={{ width: \"100%\" }}\r\n                        value={fileParam.concentration.join(\"; \")}\r\n                        onChange={(e) => {\r\n                          this.onFileParamChange(\r\n                            idx,\r\n                            \"concentration\",\r\n                            e.target.value\r\n                          );\r\n                        }}\r\n                        error={fileParam.error}\r\n                      />\r\n                    </TableCell>\r\n                  </TableRow>\r\n                ))}\r\n              </TableBody>\r\n            </Table>\r\n            <Button\r\n              variant=\"contained\"\r\n              color=\"primary\"\r\n              className={classes.applyButton}\r\n              onClick={() => this.onApply()}\r\n            >\r\n              Apply\r\n            </Button>\r\n          </TableContainer>\r\n        </Paper>\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nFileParamForm.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  project: PropTypes.object.isRequired,\r\n  spectraViewer: PropTypes.object.isRequired,\r\n  fileParams: PropTypes.array,\r\n  onUpdateFileParams: PropTypes.func,\r\n  setInitialized: PropTypes.func,\r\n  save: PropTypes.func,\r\n};\r\n\r\nexport default withSpectraViewer(withStyles(styles)(FileParamForm));\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n// define the component's styling\r\nconst styles = () => ({\r\n  resizesBorder: {\r\n    height: \"100%\",\r\n    width: \"100%\",\r\n    cursor: \"row-resize\",\r\n  },\r\n  //invisible over whole screen, so mouse is always tracked\r\n  overlayBorder: {\r\n    position: \"fixed\",\r\n    top: 0,\r\n    left: 0,\r\n    width: \"100%\",\r\n    height: \"100%\",\r\n    zIndex: 9999999,\r\n    cursor: \"row-resize\",\r\n  },\r\n});\r\n\r\nclass LocalHorizontalResizeBorder extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n    this.state = {\r\n      resizeMode: false,\r\n      borderHeight: 8,\r\n      newHeight: props.targetHeight,\r\n    };\r\n  }\r\n\r\n  handleMouseDown = (e) => {\r\n    this.setState({ resizeMode: true, lastPageY: e.pageY, initPageY: e.pageY });\r\n  };\r\n  handleMouseMove = (e) => {\r\n    e.preventDefault();\r\n    if (this.state.resizeMode) {\r\n      let deltaY = this.state.lastPageY - e.pageY;\r\n      deltaY = !this.props.bottomBorder ? deltaY : -deltaY;\r\n      let newHeight = this.state.newHeight + deltaY;\r\n      if (newHeight > this.props.min) {\r\n        this.props.resizeHeight(newHeight);\r\n      } else if (this.props.targetHeight > this.props.min) {\r\n        this.props.resizeHeight(this.props.min);\r\n      }\r\n      this.setState({ lastPageY: e.pageY, newHeight });\r\n    }\r\n  };\r\n  handleMouseEnd = () => {\r\n    if (this.state.resizeMode) {\r\n      this.setState({ resizeMode: false });\r\n      this.props.resizeHeight(this.props.targetHeight);\r\n    }\r\n  };\r\n\r\n  render() {\r\n    const { classes } = this.props;\r\n    return (\r\n      <div\r\n        className={\r\n          this.state.resizeMode ? classes.overlayBorder : classes.resizesBorder\r\n        }\r\n        onMouseDown={(e) => this.handleMouseDown(e)}\r\n        onMouseMove={(e) => this.handleMouseMove(e)}\r\n        onMouseLeave={(e) => this.handleMouseEnd(e)}\r\n        onMouseUp={(e) => this.handleMouseEnd(e)}\r\n      ></div>\r\n    );\r\n  }\r\n}\r\n\r\n// define the component's interface\r\nLocalHorizontalResizeBorder.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  min: PropTypes.number,\r\n  targetHeight: PropTypes.number,\r\n  bottomBorder: PropTypes.bool,\r\n  resizeHeight: PropTypes.func,\r\n};\r\n\r\nexport default withStyles(styles)(LocalHorizontalResizeBorder);\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport withStyles from '@mui/styles/withStyles';\r\nimport Table from \"@mui/material/Table\";\r\nimport TableBody from \"@mui/material/TableBody\";\r\nimport TableCell from \"@mui/material/TableCell\";\r\nimport TableContainer from \"@mui/material/TableContainer\";\r\nimport TableHead from \"@mui/material/TableHead\";\r\nimport TableRow from \"@mui/material/TableRow\";\r\nimport TableSortLabel from \"@mui/material/TableSortLabel\";\r\n\r\nfunction descendingComparator(a, b, orderBy) {\r\n  if (b[orderBy] < a[orderBy]) {\r\n    return -1;\r\n  }\r\n  if (b[orderBy] > a[orderBy]) {\r\n    return 1;\r\n  }\r\n  return 0;\r\n}\r\n\r\nfunction getComparator(order, orderBy) {\r\n  return order === \"desc\"\r\n    ? (a, b) => descendingComparator(a, b, orderBy)\r\n    : (a, b) => -descendingComparator(a, b, orderBy);\r\n}\r\n\r\nfunction stableSort(array, comparator) {\r\n  const stabilizedThis = array.map((el, index) => [el, index]);\r\n  stabilizedThis.sort((a, b) => {\r\n    const order = comparator(a[0], b[0]);\r\n    if (order !== 0) return order;\r\n    return a[1] - b[1];\r\n  });\r\n  return stabilizedThis.map((el) => el[0]);\r\n}\r\n\r\nfunction EnhancedTableHead(props) {\r\n  const { classes, order, orderBy, onRequestSort, headCells } = props;\r\n  const createSortHandler = (property) => (event) => {\r\n    onRequestSort(event, property);\r\n  };\r\n\r\n  return (\r\n    <TableHead>\r\n      <TableRow>\r\n        {headCells.map((headCell) => (\r\n          <TableCell\r\n            key={headCell.id}\r\n            align=\"left\"\r\n            padding=\"normal\"\r\n            sortDirection={orderBy === headCell.id ? order : false}\r\n          >\r\n            <TableSortLabel\r\n              active={orderBy === headCell.id}\r\n              direction={orderBy === headCell.id ? order : \"asc\"}\r\n              onClick={createSortHandler(headCell.id)}\r\n            >\r\n              {headCell.label}\r\n              {orderBy === headCell.id ? (\r\n                <span className={classes.visuallyHidden}>\r\n                  {order === \"desc\" ? \"sorted descending\" : \"sorted ascending\"}\r\n                </span>\r\n              ) : null}\r\n            </TableSortLabel>\r\n          </TableCell>\r\n        ))}\r\n      </TableRow>\r\n    </TableHead>\r\n  );\r\n}\r\n\r\nEnhancedTableHead.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  onRequestSort: PropTypes.func.isRequired,\r\n  order: PropTypes.oneOf([\"asc\", \"desc\"]).isRequired,\r\n  orderBy: PropTypes.string.isRequired,\r\n  rowCount: PropTypes.number.isRequired,\r\n  headCells: PropTypes.array.isRequired,\r\n};\r\n\r\nconst styles = {\r\n  root: {\r\n    width: \"100%\",\r\n  },\r\n  table: {\r\n    minWidth: 750,\r\n    \"& *\": {\r\n      color: \"white !important\",\r\n      background: \"#333333\",\r\n    },\r\n  },\r\n  visuallyHidden: {\r\n    border: 0,\r\n    clip: \"rect(0 0 0 0)\",\r\n    height: 1,\r\n    margin: -1,\r\n    overflow: \"hidden\",\r\n    padding: 0,\r\n    position: \"absolute\",\r\n    top: 20,\r\n    width: 1,\r\n  },\r\n};\r\n\r\nclass CustomResultTable extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n    this.state = {\r\n      order: \"asc\",\r\n      orderBy: \"calories\",\r\n    };\r\n  }\r\n  render() {\r\n    const { classes, rows, headCells } = this.props;\r\n    const { order, orderBy } = this.state;\r\n\r\n    const handleRequestSort = (event, property) => {\r\n      const isAsc = orderBy === property && order === \"asc\";\r\n      this.setState({\r\n        order: isAsc ? \"desc\" : \"asc\",\r\n        orderBy: property,\r\n      });\r\n    };\r\n\r\n    const dense = false;\r\n\r\n    return (\r\n      <div className={classes.root}>\r\n        <TableContainer style={{ maxHeight: this.props.tableHeight }}>\r\n          <Table\r\n            className={classes.table}\r\n            aria-labelledby=\"tableTitle\"\r\n            size={dense ? \"small\" : \"medium\"}\r\n            aria-label=\"enhanced table\"\r\n            stickyHeader\r\n          >\r\n            <EnhancedTableHead\r\n              classes={classes}\r\n              order={order}\r\n              orderBy={orderBy}\r\n              onRequestSort={handleRequestSort}\r\n              rowCount={rows.length}\r\n              headCells={headCells}\r\n            />\r\n            <TableBody style={{ color: \"white !important\" }}>\r\n              {stableSort(rows, getComparator(order, orderBy)).map(\r\n                (row, index) => {\r\n                  return (\r\n                    <TableRow hover role=\"checkbox\" tabIndex={-1} key={index}>\r\n                      {headCells.map((headCell, i) => {\r\n                        return (\r\n                          <TableCell key={i}>{row[headCell.id]}</TableCell>\r\n                        );\r\n                      })}\r\n                    </TableRow>\r\n                  );\r\n                }\r\n              )}\r\n            </TableBody>\r\n          </Table>\r\n        </TableContainer>\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nCustomResultTable.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  headCells: PropTypes.array,\r\n  rows: PropTypes.array,\r\n  tableHeight: PropTypes.number,\r\n};\r\n\r\nexport default withStyles(styles)(CustomResultTable);\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport withStyles from \"@mui/styles/withStyles\";\r\nimport CustomResultTable from \"./CustomResultTable\";\r\n\r\nimport { withSpectraViewer } from \"../contexts/SpectraViewerContext\";\r\n\r\nconst styles = {\r\n  root: {\r\n    height: \"100%\",\r\n    width: \"100%\",\r\n    overflow: \"hidden\",\r\n    backgroundColor: \"#333333\",\r\n    color: \"#ffffff\",\r\n  },\r\n  mainContent: {\r\n    overflow: \"hidden\",\r\n    height: \"100%\",\r\n  },\r\n};\r\n\r\nconst headCells = [\r\n  { id: \"rmse\", numeric: true, disablePadding: true, label: \"RMSECV\" },\r\n  { id: \"r2\", numeric: true, disablePadding: false, label: \"R²\" },\r\n  { id: \"scores\", numeric: true, disablePadding: false, label: \"Scores\" },\r\n  { id: \"areas\", numeric: false, disablePadding: false, label: \"Areas\" },\r\n  { id: \"settings\", numeric: false, disablePadding: false, label: \"Settings\" },\r\n];\r\n\r\nclass SpectraBottomTableResults extends Component {\r\n  render() {\r\n    const { classes } = this.props;\r\n    const rows = this.props.spectraViewer.pcas.map((result) => {\r\n      return {\r\n        r2: result.result.r2,\r\n        rmse: result.result.rmse,\r\n        scores: result.used_scores,\r\n        areas: result.areas.toString(),\r\n        settings: result.preprocessing.toString(),\r\n      };\r\n    });\r\n    return (\r\n      <div className={classes.root}>\r\n        <div className={classes.mainContent}>\r\n          <CustomResultTable\r\n            headCells={headCells}\r\n            rows={rows}\r\n            tableHeight={this.props.tableHeight}\r\n          />\r\n        </div>\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nSpectraBottomTableResults.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  spectraViewer: PropTypes.object.isRequired,\r\n  tableHeight: PropTypes.number,\r\n  setParentState: PropTypes.func,\r\n};\r\n\r\nexport default withSpectraViewer(withStyles(styles)(SpectraBottomTableResults));\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport withStyles from \"@mui/styles/withStyles\";\r\nimport { List, ListItem, ListItemText, Typography } from \"@mui/material\";\r\n\r\nimport { withSpectraViewer } from \"../contexts/SpectraViewerContext\";\r\n\r\nconst styles = {\r\n  root: {\r\n    height: \"100%\",\r\n    overflow: \"auto\",\r\n    opacity: 0.8,\r\n    backgroundColor: \"#000000\",\r\n    color: \"#ffffff\",\r\n  },\r\n  mainContent: {\r\n    overflow: \"auto\",\r\n  },\r\n};\r\n\r\nclass SpectraLeftTableResults extends Component {\r\n  render() {\r\n    const { classes } = this.props;\r\n    const { rawSpectra } = this.props.spectraViewer;\r\n    return (\r\n      <div className={classes.root}>\r\n        <div className={classes.mainContent}>\r\n          {rawSpectra && rawSpectra.length > 0 && (\r\n            <List>\r\n              <ListItem>\r\n                <ListItemText primary={\"Type\"} />\r\n                <Typography style={{ marginRight: \"10px\" }}>Value</Typography>\r\n              </ListItem>\r\n              {Object.keys(\r\n                rawSpectra[this.props.spectraViewer.selectedSpectrum].meta\r\n                  .measurement\r\n              ).map((key, idx) => {\r\n                const value =\r\n                  rawSpectra[this.props.spectraViewer.selectedSpectrum].meta\r\n                    .measurement[key];\r\n                return (\r\n                  <ListItem key={idx}>\r\n                    <ListItemText primary={key + \":\"} />\r\n                    <Typography\r\n                      style={{\r\n                        marginRight: \"10px\",\r\n                        textOverflow: \"ellipsis\",\r\n                        overflow: \"hidden\",\r\n                        whiteSpace: \"nowrap\",\r\n                      }}\r\n                    >\r\n                      {value.toString()}\r\n                    </Typography>\r\n                  </ListItem>\r\n                );\r\n              })}\r\n            </List>\r\n          )}\r\n        </div>\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nSpectraLeftTableResults.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  spectraViewer: PropTypes.object.isRequired,\r\n  leftTableWidth: PropTypes.number,\r\n  setParentState: PropTypes.func,\r\n};\r\n\r\nexport default withSpectraViewer(withStyles(styles)(SpectraLeftTableResults));\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport * as echarts from \"echarts\";\r\nimport ecStat from \"echarts-stat\";\r\nimport { Select, MenuItem, InputLabel, FormControl } from \"@mui/material\";\r\n\r\nimport withStyles from \"@mui/styles/withStyles\";\r\nimport { withSpectraViewer } from \"../contexts/SpectraViewerContext\";\r\n\r\nconst styles = () => ({\r\n  root: {\r\n    position: \"relative\",\r\n    height: \"100%\",\r\n    width: \"100%\",\r\n    display: \"grid\",\r\n    gridTemplateRows: \"auto 1fr\",\r\n  },\r\n  chartObject: {\r\n    width: \"100%\",\r\n    height: \"100%\",\r\n  },\r\n  margin: {\r\n    textAlign: \"center\",\r\n    margin: \"10px 30px 0\",\r\n  },\r\n});\r\n\r\nclass ResultChart extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n    this.chartRef = React.createRef();\r\n    this.state = {\r\n      chartType: props.initChartType,\r\n    };\r\n  }\r\n\r\n  updateDimensions = () => {\r\n    if (this.resultChart) this.resultChart.resize();\r\n  };\r\n\r\n  componentDidUpdate = () => {\r\n    this.updateDimensions();\r\n  };\r\n\r\n  componentDidMount = () => {\r\n    this.initChart();\r\n  };\r\n\r\n  initChart = () => {\r\n    let chartDom = this.chartRef.current;\r\n    echarts.registerTransform(ecStat.transform.regression);\r\n\r\n    this.resultChart = echarts.init(chartDom);\r\n\r\n    this.setOption(this.state.chartType);\r\n  };\r\n\r\n  setOption = (chartType) => {\r\n    if (this.resultChart) {\r\n      this.resultChart.clear();\r\n    }\r\n    // ToDo\r\n    // // Group PCAs with same areas and preprocessing\r\n    // let pcas = this.props.spectrumViewer.pcas;\r\n    // let pcaGroups = [];\r\n\r\n    // pcas.forEach((pca) => {\r\n    //   // Find all similar pcas\r\n    //   let pcaGroup = pcas.filter((element) => {\r\n    //     if (\r\n    //       element.areas === pca.areas &&\r\n    //       element.preprocessing === pca.preprocessing\r\n    //     ) {\r\n    //       return element;\r\n    //     }\r\n    //   });\r\n    //   pcaGroups.push(pcaGroup);\r\n    //   // Remove from overall array\r\n    //   pcaGroup.forEach((pcaGroupElement) =>\r\n    //     pcas.splice(\r\n    //       pcas.findIndex((pcaElement) => pcaElement.id === pcaGroupElement.id),\r\n    //       1\r\n    //     )\r\n    //   );\r\n    // });\r\n\r\n    // console.log(\"PcaGroups\", pcaGroups);\r\n\r\n    let data = [];\r\n    let xAxisLabel = \"Actual\";\r\n    let yAxisLabel = \"Prediction\";\r\n\r\n    switch (chartType) {\r\n      case \"rmsecvScore\":\r\n        xAxisLabel = \"Score\";\r\n        yAxisLabel = \"RMSECV\";\r\n        data = this.props.spectraViewer.pcas.map((item) => {\r\n          return {\r\n            value: [item.used_scores, item.result.rmse],\r\n          };\r\n        });\r\n        break;\r\n\r\n      case \"r2Score\":\r\n        xAxisLabel = \"Score\";\r\n        yAxisLabel = \"R²\";\r\n        data = this.props.spectraViewer.pcas.map((item) => {\r\n          return {\r\n            value: [item.used_scores, item.result.r2],\r\n          };\r\n        });\r\n        break;\r\n\r\n      case \"predTrue\":\r\n        data = this.props.spectraViewer.rawSpectra.map((serie, idx) => {\r\n          return {\r\n            itemStyle: {\r\n              color: this.props.datasets[idx].color,\r\n            },\r\n            value: [\r\n              serie.meta.substances[0].concentration,\r\n              serie.meta.substances[0].predictedConcentration,\r\n            ],\r\n          };\r\n        });\r\n        break;\r\n\r\n      case \"diffTrue\":\r\n        data = this.props.spectraViewer.rawSpectra.map((series, idx) => {\r\n          return {\r\n            name: this.props.datasets[idx].name,\r\n            itemStyle: {\r\n              color: this.props.datasets[idx].color,\r\n            },\r\n            value: [\r\n              series.meta.substances[0].concentration,\r\n              series.meta.substances[0].concentration -\r\n                series.meta.substances[0].predictedConcentration,\r\n            ],\r\n          };\r\n        });\r\n        break;\r\n\r\n      default:\r\n        // Empty Chart\r\n        xAxisLabel = \"\";\r\n        yAxisLabel = \"\";\r\n        data = [];\r\n    }\r\n\r\n    let series = [\r\n      {\r\n        name: \"Markers\",\r\n        type: \"line\",\r\n        data: data,\r\n      },\r\n    ];\r\n    let labels = [\"Markers\"];\r\n\r\n    // Reference lines in certain charts\r\n    if (chartType === \"predTrue\" || chartType === \"diffTrue\") {\r\n      labels.push(\"Line\");\r\n      let lineData = this.props.spectraViewer.rawSpectra.map((serie) => {\r\n        if (chartType === \"diffTrue\") {\r\n          return [serie.meta.substances[0].concentration, 0];\r\n        } else {\r\n          return [\r\n            serie.meta.substances[0].concentration,\r\n            serie.meta.substances[0].concentration,\r\n          ];\r\n        }\r\n      });\r\n      lineData.unshift([0, 0]);\r\n      series.push({\r\n        name: \"Line\",\r\n        type: \"line\",\r\n        data: lineData,\r\n      });\r\n    }\r\n\r\n    let option = {\r\n      legend: {\r\n        data: labels,\r\n        left: \"center\",\r\n        bottom: 10,\r\n      },\r\n      grid: {\r\n        top: 40,\r\n        left: 60,\r\n        right: 80,\r\n      },\r\n      tooltip: {\r\n        trigger: \"axis\",\r\n        axisPointer: {\r\n          type: \"cross\",\r\n        },\r\n      },\r\n      xAxis: {\r\n        name: xAxisLabel,\r\n      },\r\n      yAxis: {\r\n        type: \"value\",\r\n        name: yAxisLabel,\r\n        min: \"dataMin\",\r\n        max: \"dataMax\",\r\n        axisLabel: {\r\n          show: true,\r\n          interval: 1e-3,\r\n          showMinLabel: false,\r\n          showMaxLabel: false,\r\n        },\r\n      },\r\n      series: series,\r\n    };\r\n\r\n    option && this.resultChart.setOption(option);\r\n  };\r\n\r\n  handleChange = (e) => {\r\n    this.setState({ chartType: e.target.value }, () => {\r\n      this.setOption(this.state.chartType);\r\n    });\r\n  };\r\n\r\n  render() {\r\n    const { classes } = this.props;\r\n    return (\r\n      <div className={classes.root}>\r\n        <FormControl className={classes.margin}>\r\n          <InputLabel>Chart Type</InputLabel>\r\n          <Select\r\n            name=\"SelectChartType\"\r\n            label=\"Chart Type\"\r\n            // id=\"demo-customized-select\"\r\n            value={this.state.chartType}\r\n            onChange={(e) => this.handleChange(e)}\r\n            //input={<BootstrapInput />}\r\n          >\r\n            {this.props.chartTypes.map((chartType, idx) => {\r\n              return (\r\n                <MenuItem key={idx} value={chartType.value}>\r\n                  {chartType.name}\r\n                </MenuItem>\r\n              );\r\n            })}\r\n          </Select>\r\n        </FormControl>\r\n        <div className={classes.chartObject} ref={this.chartRef} />\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nResultChart.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  spectraViewer: PropTypes.object.isRequired,\r\n  initChartType: PropTypes.string,\r\n  chartTypes: PropTypes.array,\r\n  datasets: PropTypes.array,\r\n};\r\n\r\nexport default withSpectraViewer(withStyles(styles)(ResultChart));\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport { Fab, Grid, IconButton } from \"@mui/material\";\r\nimport AddIcon from \"@mui/icons-material/Add\";\r\nimport RemoveCircleIcon from \"@mui/icons-material/RemoveCircle\";\r\n\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n\r\nimport ResultChart from \"./ResultChart\";\r\nimport { withSpectraViewer } from \"../contexts/SpectraViewerContext\";\r\n\r\nconst styles = (theme) => ({\r\n  root: {\r\n    position: \"relative\",\r\n    height: \"100%\",\r\n    overflow: \"hidden\",\r\n  },\r\n  fab: {\r\n    position: \"absolute\",\r\n    bottom: theme.spacing(2),\r\n    right: theme.spacing(2),\r\n  },\r\n  excludeButton: {\r\n    position: \"absolute\",\r\n    top: 0,\r\n    right: 0,\r\n    color: \"#666\",\r\n  },\r\n});\r\n\r\nconst CHARTTYPES = [\r\n  { value: \"rmsecvScore\", name: \"RMSECV vs Score\" },\r\n  { value: \"r2Score\", name: \"R² vs Score\" },\r\n  { value: \"predTrue\", name: \"Prediction vs. True value\" },\r\n  { value: \"diffTrue\", name: \"Difference vs. True value\" },\r\n];\r\n\r\nclass SpectraResultCharts extends Component {\r\n  componentDidMount = () => {\r\n    this.props.setCurrentlyShownData(\"result_chart\");\r\n    // Should none be present so far, preselect the first graph\r\n    if (this.props.resultChartTypes.length === 0) {\r\n      this.handleClickOpen();\r\n    }\r\n  };\r\n\r\n  handleClickOpen = () => {\r\n    let value = CHARTTYPES[this.props.resultChartTypes.length % 4].value;\r\n    this.props.onUpdateResultChartTypes([\r\n      ...this.props.resultChartTypes,\r\n      value,\r\n    ]);\r\n  };\r\n\r\n  onRemoveChart = (index) => {\r\n    this.props.onUpdateResultChartTypes(\r\n      this.props.resultChartTypes.filter((elem, idx) => idx !== index)\r\n    );\r\n  };\r\n\r\n  render() {\r\n    const { classes, resultChartTypes } = this.props;\r\n    return (\r\n      <div className={classes.root}>\r\n        <Grid\r\n          container\r\n          style={{\r\n            position: \"relative\",\r\n            height: \"100%\",\r\n            flexBasis: \"100%\",\r\n            overflowY: \"inherit\",\r\n            overflowX: \"inherit\",\r\n          }}\r\n        >\r\n          {resultChartTypes.map((initChartType, index) => (\r\n            <Grid\r\n              item\r\n              key={initChartType + index}\r\n              xs={\r\n                resultChartTypes.length === 4\r\n                  ? 6\r\n                  : resultChartTypes.length > 2\r\n                  ? 4\r\n                  : resultChartTypes.length > 1\r\n                  ? 6\r\n                  : 12\r\n              }\r\n              style={{\r\n                border: resultChartTypes.length > 1 && \"1px solid\",\r\n                position: \"relative\",\r\n                background: \"#EBEBEB\",\r\n                height:\r\n                  resultChartTypes.length === 4\r\n                    ? \"50%\"\r\n                    : resultChartTypes.length > 6\r\n                    ? \"33.333333333%\"\r\n                    : resultChartTypes.length > 3\r\n                    ? \"50%\"\r\n                    : \"100%\",\r\n              }}\r\n            >\r\n              <ResultChart\r\n                initChartType={initChartType}\r\n                chartTypes={CHARTTYPES}\r\n                datasets={this.props.datasets}\r\n              />\r\n              <IconButton\r\n                className={classes.excludeButton}\r\n                size=\"small\"\r\n                onClick={() => this.onRemoveChart(index)}\r\n              >\r\n                <RemoveCircleIcon />\r\n              </IconButton>\r\n            </Grid>\r\n          ))}\r\n        </Grid>\r\n\r\n        {resultChartTypes.length < 9 && (\r\n          <Fab\r\n            className={classes.fab}\r\n            color=\"primary\"\r\n            aria-label=\"add\"\r\n            onClick={this.handleClickOpen}\r\n          >\r\n            <AddIcon />\r\n          </Fab>\r\n        )}\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nSpectraResultCharts.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  spectraViewer: PropTypes.object.isRequired,\r\n  resultChartTypes: PropTypes.array,\r\n  datasets: PropTypes.array,\r\n  onUpdateResultChartTypes: PropTypes.func,\r\n  setCurrentlyShownData: PropTypes.func,\r\n};\r\n\r\nexport default withSpectraViewer(withStyles(styles)(SpectraResultCharts));\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport {\r\n  Button,\r\n  IconButton,\r\n  ListItem,\r\n  ListItemText,\r\n  Table,\r\n  TableBody,\r\n  TableCell,\r\n  TableContainer,\r\n  TableRow,\r\n  Tooltip,\r\n} from \"@mui/material\";\r\n\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n\r\nimport {\r\n  Cancel,\r\n  CheckCircle,\r\n  ErrorOutline,\r\n  HourglassEmpty,\r\n  Timeline,\r\n  Visibility,\r\n  VisibilityOff,\r\n} from \"@mui/icons-material\";\r\n\r\nimport SketchColorPicker from \"../../../common/components/SketchColorPicker\";\r\nimport { withSpectraViewer } from \"../../contexts/SpectraViewerContext\";\r\n\r\nconst TooltipTable = withStyles({\r\n  tooltip: {\r\n    background: \"#FFFFFF\",\r\n    border: \"#EBEBEB solid 2px\",\r\n  },\r\n})(Tooltip);\r\n\r\nclass SpectraTab extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n    this.state = {};\r\n  }\r\n\r\n  componentDidMount() {\r\n    this.props.showRawSpectra();\r\n  }\r\n\r\n  /**\r\n   * Determines which icon to diplay as a status of analysis results.\r\n   * @param {Object} spectrum A spectrum for which analysis results can be displayed.\r\n   * @returns {Tooltip} Renderable mui icon with mouseover information.\r\n   */\r\n  statusIcon = (spectrum) => {\r\n    // In case of temporary spectra, that will not be analyzed\r\n    if (spectrum.isTemporary) {\r\n      return (\r\n        <Tooltip\r\n          disableInteractive\r\n          arrow\r\n          title=\"Generated spectrum, will not be analyzed\"\r\n        >\r\n          <Timeline />\r\n        </Tooltip>\r\n      );\r\n    }\r\n\r\n    // In case of not defined or empty rated spectra\r\n    if (\r\n      !this.props.spectraViewer.ratedSpectra ||\r\n      this.props.spectraViewer.ratedSpectra.length === 0\r\n    ) {\r\n      return (\r\n        <Tooltip disableInteractive arrow title=\"Awaiting PCA choice\">\r\n          <HourglassEmpty />\r\n        </Tooltip>\r\n      );\r\n    }\r\n    // Attempt to find spectrum in array of rated spectra\r\n    let spectrumRating = undefined;\r\n    let spectrumWithinTolerances = undefined;\r\n    let error = false;\r\n    this.props.spectraViewer.ratedSpectra.some((ratedSpectrum) => {\r\n      if (ratedSpectrum.id === spectrum.id) {\r\n        spectrumWithinTolerances = ratedSpectrum.pass;\r\n        spectrumRating = ratedSpectrum.rating;\r\n        error = \"Error\" in ratedSpectrum.rating;\r\n        return true;\r\n      }\r\n      return false;\r\n    });\r\n    // Define when a Spectrum is allowed to pass\r\n    if (spectrumRating) {\r\n      return (\r\n        <TooltipTable\r\n          arrow\r\n          interactive\r\n          placement=\"left\"\r\n          title={\r\n            <TableContainer>\r\n              <Table>\r\n                <TableBody>\r\n                  {Object.entries(spectrumRating).map(([key, value]) => {\r\n                    return (\r\n                      <TableRow key={key} label={key}>\r\n                        <TableCell>{key}</TableCell>\r\n                        <TableCell>\r\n                          {typeof value === \"number\"\r\n                            ? value < 0.01 && value !== 0\r\n                              ? value.toExponential(3)\r\n                              : Number(value).toFixed(6)\r\n                            : value}\r\n                        </TableCell>\r\n                      </TableRow>\r\n                    );\r\n                  })}\r\n                </TableBody>\r\n              </Table>\r\n            </TableContainer>\r\n          }\r\n        >\r\n          {error ? (\r\n            <ErrorOutline interactive=\"true\" style={{ color: \"#EB144C\" }} />\r\n          ) : spectrumWithinTolerances ? (\r\n            <CheckCircle interactive=\"true\" style={{ color: \"#00D084\" }} />\r\n          ) : (\r\n            <Cancel interactive=\"true\" style={{ color: \"#EB144C\" }} />\r\n          )}\r\n        </TooltipTable>\r\n      );\r\n    } else {\r\n      return (\r\n        <Tooltip disableInteractive arrow title=\"Awaiting analysis\">\r\n          <HourglassEmpty />\r\n        </Tooltip>\r\n      );\r\n    }\r\n  };\r\n\r\n  render() {\r\n    const { spectraViewer } = this.props;\r\n    return (\r\n      <div\r\n        style={{\r\n          overflow: \"auto\",\r\n          gridTemplateRows: this.props.project.type === \"auto 1fr auto\",\r\n        }}\r\n      >\r\n        {this.props.initialized && (\r\n          <Button\r\n            style={{ width: \"100%\" }}\r\n            onClick={() => this.props.toggleAll()}\r\n          >\r\n            Toggle visibility of all spectra\r\n          </Button>\r\n        )}\r\n        {this.props.initialized &&\r\n          // List all spectra\r\n          this.props.datasets.map((item, idx) => {\r\n            return (\r\n              <React.Fragment key={idx}>\r\n                {/* Spectra */}\r\n                <ListItem\r\n                  button\r\n                  key={555}\r\n                  selected={spectraViewer.selectedSpectrum === idx}\r\n                  style={{\r\n                    paddingBottom: 0,\r\n                    paddingTop: 0,\r\n                  }}\r\n                  onClick={() =>\r\n                    this.props.spectraViewer.setState({ selectedSpectrum: idx })\r\n                  }\r\n                >\r\n                  <span style={{ width: \"100%\", minWidth: 0 }}>\r\n                    <ListItemText\r\n                      style={{\r\n                        padding: \"0px\",\r\n                      }}\r\n                      primary={\r\n                        <div\r\n                          style={{\r\n                            textOverflow: \"ellipsis\",\r\n                            overflow: \"hidden\",\r\n                            whiteSpace: \"nowrap\",\r\n                          }}\r\n                        >\r\n                          {item.name}\r\n                        </div>\r\n                      }\r\n                    />\r\n                  </span>\r\n                  {this.props.project.type === \"ESREvaluation\" &&\r\n                    // Statusicon used for pca compliance\r\n                    this.statusIcon(item)}\r\n                  {\r\n                    // Visibility Button\r\n                    <Tooltip\r\n                      disableInteractive\r\n                      title={item.checked ? \"Hide\" : \"Show\"}\r\n                    >\r\n                      <IconButton\r\n                        onClick={(e) => {\r\n                          this.props.toggleLegend(item.name);\r\n                          e.stopPropagation();\r\n                        }}\r\n                        size=\"large\"\r\n                      >\r\n                        {item.checked ? <Visibility /> : <VisibilityOff />}\r\n                      </IconButton>\r\n                    </Tooltip>\r\n                  }\r\n                  <SketchColorPicker\r\n                    color={item.color}\r\n                    handleChange={(newColor) => {\r\n                      item.color = newColor;\r\n                      this.props.updateChartData(this.props.datasets, () => {});\r\n                    }}\r\n                  />\r\n                </ListItem>\r\n              </React.Fragment>\r\n            );\r\n          })}\r\n        {this.props.initialized && this.props.project.type !== \"ESREvaluation\" && (\r\n          // Option to change spectra settings\r\n          <Button\r\n            style={{ width: \"100%\" }}\r\n            onClick={() => this.props.setInitialized(false)}\r\n          >\r\n            Change Spectra Parameters\r\n          </Button>\r\n        )}\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nSpectraTab.propTypes = {\r\n  spectraViewer: PropTypes.object.isRequired,\r\n  project: PropTypes.object,\r\n  datasets: PropTypes.array,\r\n  toggleLegend: PropTypes.func,\r\n  toggleAll: PropTypes.func,\r\n  initialized: PropTypes.bool,\r\n  updateChartData: PropTypes.func,\r\n  setInitialized: PropTypes.func,\r\n  showRawSpectra: PropTypes.func,\r\n  onSave: PropTypes.func,\r\n  returnHome: PropTypes.func,\r\n};\r\n\r\nexport default withSpectraViewer(SpectraTab);\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport { v4 as uuidv4 } from \"uuid\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\nimport {\r\n  FormControlLabel,\r\n  Checkbox,\r\n  Table,\r\n  TableBody,\r\n  TableCell,\r\n  TableContainer,\r\n  TableHead,\r\n  TableRow,\r\n  Paper,\r\n  Input,\r\n  Button,\r\n  IconButton,\r\n  Chip,\r\n} from \"@mui/material\";\r\nimport { Remove, Add, Delete } from \"@mui/icons-material\";\r\n\r\nimport { withSpectraViewer } from \"../../contexts/SpectraViewerContext\";\r\n\r\nconst styles = {\r\n  applyButton: {\r\n    width: \"100%\",\r\n  },\r\n  operationSetRow: {\r\n    marginBottom: 10,\r\n  },\r\n  applyContainer: {\r\n    display: \"grid\",\r\n    gridTemplateRows: \"1fr auto\",\r\n    overflow: \"hidden\",\r\n  },\r\n  applyMainContent: {\r\n    height: \"100%\",\r\n    overflow: \"auto\",\r\n    borderBottom: \"2px solid #EBEBEB\",\r\n  },\r\n  operationButton: {\r\n    width: \"100%\",\r\n    justifyContent: \"left\",\r\n    textAligne: \"left\",\r\n    textTransform: \"none\",\r\n  },\r\n  chipIndikation: {\r\n    width: 100,\r\n    cursor: \"pointer\",\r\n  },\r\n  chipContainer: {\r\n    display: \"flex\",\r\n    justifyContent: \"center\",\r\n    flexWrap: \"wrap\",\r\n    listStyle: \"none\",\r\n    padding: 5,\r\n    margin: 0,\r\n  },\r\n  chip: {\r\n    margin: 5,\r\n  },\r\n  applyBottomContent: {\r\n    borderTop: \"3px solid #EBEBEB\",\r\n    padding: 10,\r\n  },\r\n};\r\n\r\nconst operations = {\r\n  diff: {\r\n    name: \"differentiate\",\r\n    type: \"int\",\r\n  },\r\n  int: {\r\n    name: \"integrate\",\r\n    type: \"int\",\r\n  },\r\n  // pwr: {\r\n  //   name: \"powerTransform\",\r\n  //   type: \"bool\",\r\n  // },\r\n  minMax: {\r\n    name: \"scaleMinMax\",\r\n    type: \"bool\",\r\n  },\r\n  quant: {\r\n    name: \"scaleToQuantiles\",\r\n    type: \"bool\",\r\n  },\r\n  std: {\r\n    name: \"standardize\",\r\n    type: \"bool\",\r\n  },\r\n  vec: {\r\n    name: \"vectorNorm\",\r\n    type: \"bool\",\r\n  },\r\n  scores: {\r\n    name: \"maxPCAScores\",\r\n    type: \"int\",\r\n  },\r\n};\r\n\r\nclass OperationsTab extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n    this.state = {};\r\n  }\r\n\r\n  /**\r\n   * Updates the areas as they need to be updated when moving the boundaries inside the graph.\r\n   * Cannot use <input value={}> since the direct update breaks it.\r\n   */\r\n  componentDidUpdate = () => {\r\n    this.props.spectraViewer.areas.forEach((area) => {\r\n      area.refs[0].current.value = area.coordRange[0].toFixed(3);\r\n      area.refs[1].current.value = area.coordRange[1].toFixed(3);\r\n    });\r\n  };\r\n\r\n  onAddOperationsSet = () => {\r\n    let operationSetsCopy = JSON.parse(\r\n      JSON.stringify(this.props.spectraViewer.operationSets)\r\n    );\r\n    operationSetsCopy.push([[\"scores\", 1]]);\r\n    this.props.spectraViewer.setState({ operationSets: operationSetsCopy });\r\n  };\r\n\r\n  onRemoveOperationSet = (idx) => {\r\n    let operationSetsCopy = JSON.parse(\r\n      JSON.stringify(this.props.spectraViewer.operationSets)\r\n    );\r\n    operationSetsCopy.splice(idx, 1);\r\n    this.props.spectraViewer.setState({ operationSets: operationSetsCopy });\r\n  };\r\n\r\n  onAddOperation = (operation) => {\r\n    let operationSetsCopy = JSON.parse(\r\n      JSON.stringify(this.props.spectraViewer.operationSets)\r\n    );\r\n    let lastSet = operationSetsCopy[operationSetsCopy.length - 1];\r\n    let toAdd = true;\r\n    if (lastSet.length > 1) {\r\n      // Increment if there already is an incrementable value\r\n      if (lastSet[lastSet.length - 2][0] === operation) {\r\n        // Only non-bool types are incremented\r\n        if (operations[operation].type !== \"bool\") {\r\n          lastSet[lastSet.length - 2][1] += 1;\r\n        }\r\n        toAdd = false;\r\n      }\r\n    }\r\n    // Create new entry\r\n    if (toAdd) {\r\n      lastSet.splice(lastSet.length - 1, 0, [\r\n        operation,\r\n        operations[operation].type === \"bool\" ? true : 1,\r\n      ]);\r\n    }\r\n    this.props.spectraViewer.setState({ operationSets: operationSetsCopy });\r\n  };\r\n\r\n  onChangeChip = (setIdx, idx, value) => {\r\n    let operationSetsCopy = JSON.parse(\r\n      JSON.stringify(this.props.spectraViewer.operationSets)\r\n    );\r\n    const key = operationSetsCopy[setIdx][idx][0];\r\n    if (value === -1 || operations[key].type === \"int\") {\r\n      operationSetsCopy[setIdx][idx][1] += value;\r\n    }\r\n    if (operationSetsCopy[setIdx][idx][1] <= 0) {\r\n      operationSetsCopy[setIdx].splice(idx, 1);\r\n    }\r\n    if (operationSetsCopy[setIdx].length === 0) {\r\n      operationSetsCopy.splice(setIdx, 1);\r\n    }\r\n    // Update operationsets if still present\r\n    if (operationSetsCopy.length > 0) {\r\n      this.props.spectraViewer.setState({ operationSets: operationSetsCopy });\r\n    }\r\n  };\r\n\r\n  onApplySettings = () => {\r\n    // Check for plausible pca settings\r\n    for (\r\n      let idx = 0;\r\n      idx < this.props.spectraViewer.operationSets.length;\r\n      idx++\r\n    ) {\r\n      // Get scores of opset\r\n      let scores = this.props.spectraViewer.operationSets.slice(-1)[0][0][1];\r\n      if (scores <= 0) {\r\n        this.props.throwError(\r\n          \"Please select a minimum of 1 score. Possibly increase selected spectra.\"\r\n        );\r\n        return;\r\n      } else if (scores > this.props.spectraViewer.maxScores) {\r\n        this.props.throwError(\r\n          `Too many scores. Increase selected spectra or reduce scores to ${this.props.spectraViewer.maxScores}`\r\n        );\r\n        return;\r\n      }\r\n    }\r\n\r\n    // Calculate the pcas as required\r\n    this.props.requestData(\"calculate_pcas\");\r\n    // Continue to pca selection tab\r\n    if (this.props.project.type === \"ESRTraining\") {\r\n      this.props.setActiveTab(2);\r\n    }\r\n  };\r\n\r\n  /**\r\n   * Updates the areas in the graph after entering them into the table.\r\n   * @param {int} idx The index of the area you're referring to.\r\n   * @param {JSON} area The area you're referring to.\r\n   */\r\n  onEnterArea = (idx, area) => {\r\n    let tempAreas = this.props.spectraViewer.areas;\r\n    tempAreas[idx].coordRange[0] = parseFloat(area.refs[0].current.value);\r\n    tempAreas[idx].coordRange[1] = parseFloat(area.refs[1].current.value);\r\n    this.props.spectraViewer.updateAreas(tempAreas);\r\n    this.props.chart.dispatchAction({\r\n      type: \"brush\",\r\n      areas: tempAreas,\r\n    });\r\n  };\r\n\r\n  render() {\r\n    const { classes } = this.props;\r\n\r\n    return (\r\n      <div className={classes.applyContainer}>\r\n        <div className={classes.applyMainContent}>\r\n          <div className={classes.paddingContainer}>\r\n            {Object.keys(operations).map((short) => {\r\n              return (\r\n                <React.Fragment key={uuidv4()}>\r\n                  <Button\r\n                    className={classes.operationButton}\r\n                    onClick={() => {\r\n                      if (short !== \"scores\") this.onAddOperation(short);\r\n                      else this.onAddOperationsSet();\r\n                    }}\r\n                  >\r\n                    <span className={classes.chipIndikation}>\r\n                      <Chip\r\n                        label={short}\r\n                        color={short === \"scores\" ? \"secondary\" : \"primary\"}\r\n                      />\r\n                    </span>\r\n                    {operations[short].name}\r\n                    {short === \"scores\" ? \" (add new operations set)\" : \"\"}\r\n                  </Button>\r\n                  <br />\r\n                </React.Fragment>\r\n              );\r\n            })}\r\n            <ol>\r\n              {this.props.spectraViewer.operationSets.map(\r\n                (operationSet, setIdx) => {\r\n                  return (\r\n                    <li className={classes.operationSetRow} key={uuidv4()}>\r\n                      <Paper className={classes.chipContainer} component=\"ul\">\r\n                        {operationSet.map((data, idx) => {\r\n                          // Make sure that not too many scores are selected, but no fewer than 0\r\n                          data[1] = Math.max(\r\n                            0,\r\n                            Math.min(\r\n                              data[1],\r\n                              this.props.spectraViewer.maxScores\r\n                            )\r\n                          );\r\n\r\n                          const removeIcon = <Remove />;\r\n                          let icon;\r\n\r\n                          let hideRemove =\r\n                            data[0] === \"scores\" && data[1] === 1;\r\n                          let hideAdd =\r\n                            data[0] === \"scores\" &&\r\n                            data[1] >= this.props.spectraViewer.maxScores;\r\n\r\n                          let labelValue = data[0];\r\n                          if (operations[data[0]].type === \"int\") {\r\n                            labelValue += \" \" + data[1];\r\n                          } else {\r\n                            hideAdd = true;\r\n                          }\r\n\r\n                          if (!hideAdd) {\r\n                            icon = <Add />;\r\n                          }\r\n\r\n                          return (\r\n                            <li key={uuidv4()}>\r\n                              <Chip\r\n                                className={classes.chip}\r\n                                icon={icon}\r\n                                label={labelValue}\r\n                                onClick={() => {\r\n                                  if (!hideAdd)\r\n                                    this.onChangeChip(setIdx, idx, 1);\r\n                                }}\r\n                                onDelete={\r\n                                  hideRemove\r\n                                    ? undefined\r\n                                    : () => this.onChangeChip(setIdx, idx, -1)\r\n                                }\r\n                                deleteIcon={removeIcon}\r\n                                color={\r\n                                  data[0] === \"scores\" ? \"secondary\" : \"primary\"\r\n                                }\r\n                              />\r\n                            </li>\r\n                          );\r\n                        })}\r\n                        {this.props.spectraViewer.operationSets.length > 1 && (\r\n                          <li>\r\n                            <IconButton\r\n                              edge=\"end\"\r\n                              aria-label=\"delete\"\r\n                              onClick={() => {\r\n                                this.onRemoveOperationSet(setIdx);\r\n                              }}\r\n                              size=\"large\"\r\n                            >\r\n                              <Delete\r\n                                fontSize=\"small\"\r\n                                style={{ color: \"red\" }}\r\n                              />\r\n                            </IconButton>\r\n                          </li>\r\n                        )}\r\n                      </Paper>\r\n                    </li>\r\n                  );\r\n                }\r\n              )}\r\n            </ol>\r\n            {this.props.spectraViewer.areas.length > 0 && (\r\n              <TableContainer component={Paper}>\r\n                <Table className={classes.table} aria-label=\"simple table\">\r\n                  <TableHead>\r\n                    <TableRow>\r\n                      <TableCell></TableCell>\r\n                      <TableCell>from</TableCell>\r\n                      <TableCell>to</TableCell>\r\n                      <TableCell></TableCell>\r\n                    </TableRow>\r\n                  </TableHead>\r\n                  <TableBody>\r\n                    {this.props.spectraViewer.areas.map((area, idx) => (\r\n                      <TableRow key={idx}>\r\n                        <TableCell component=\"th\" scope=\"row\">\r\n                          {idx}\r\n                        </TableCell>\r\n                        <TableCell>\r\n                          <Input\r\n                            placeholder=\"from\"\r\n                            type=\"number\"\r\n                            defaultValue={area.coordRange[0].toFixed(3)}\r\n                            onBlur={() => {\r\n                              this.onEnterArea(idx, area);\r\n                            }}\r\n                            onKeyUp={(e) => {\r\n                              if (e.key === \"Enter\") {\r\n                                this.onEnterArea(idx, area);\r\n                              }\r\n                            }}\r\n                            inputRef={area.refs[0]}\r\n                            inputProps={{\r\n                              \"aria-label\": \"description\",\r\n                              step: this.props.xAxisData.stepX,\r\n                            }}\r\n                          />\r\n                        </TableCell>\r\n                        <TableCell>\r\n                          <Input\r\n                            placeholder=\"from\"\r\n                            type=\"number\"\r\n                            defaultValue={area.coordRange[1].toFixed(3)}\r\n                            onBlur={() => {\r\n                              this.onEnterArea(idx, area);\r\n                            }}\r\n                            onKeyUp={(e) => {\r\n                              if (e.key === \"Enter\") {\r\n                                this.onEnterArea(idx, area);\r\n                              }\r\n                            }}\r\n                            inputRef={area.refs[1]}\r\n                            inputProps={{\r\n                              \"aria-label\": \"description\",\r\n                              step: this.props.xAxisData.stepX,\r\n                            }}\r\n                          />\r\n                        </TableCell>\r\n                        <TableCell>\r\n                          <IconButton\r\n                            edge=\"end\"\r\n                            aria-label=\"delete\"\r\n                            onClick={() => {\r\n                              let tempAreas = this.props.spectraViewer.areas;\r\n                              this.props.spectraViewer.areas.splice(idx, 1);\r\n                              this.props.spectraViewer.updateAreas(tempAreas);\r\n                              this.props.chart.dispatchAction({\r\n                                type: \"brush\",\r\n                                areas: tempAreas,\r\n                              });\r\n                            }}\r\n                            size=\"large\"\r\n                          >\r\n                            <Delete fontSize=\"small\" style={{ color: \"red\" }} />\r\n                          </IconButton>\r\n                        </TableCell>\r\n                      </TableRow>\r\n                    ))}\r\n                  </TableBody>\r\n                </Table>\r\n              </TableContainer>\r\n            )}\r\n          </div>\r\n        </div>\r\n        {this.props.initialized && (\r\n          <div className={classes.applyBottomContent}>\r\n            <div className={classes.paddingContainer}>\r\n              <FormControlLabel\r\n                control={\r\n                  <Checkbox\r\n                    name=\"CheckboxUseSavedCalcs\"\r\n                    onChange={() => {\r\n                      this.props.spectraViewer.toggleSavedCalcs();\r\n                    }}\r\n                    checked={this.props.spectraViewer.useSavedCalcs}\r\n                  />\r\n                }\r\n                label=\"Use saved calculations\"\r\n              />\r\n              <Button\r\n                variant=\"contained\"\r\n                color=\"primary\"\r\n                className={classes.applyButton}\r\n                onClick={() => {\r\n                  this.onApplySettings();\r\n                }}\r\n              >\r\n                Apply\r\n              </Button>\r\n            </div>\r\n          </div>\r\n        )}\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nOperationsTab.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  spectraViewer: PropTypes.object.isRequired,\r\n  project: PropTypes.object,\r\n  requestData: PropTypes.func,\r\n  chart: PropTypes.object,\r\n  xAxisData: PropTypes.object,\r\n  initialized: PropTypes.bool,\r\n  setActiveTab: PropTypes.func,\r\n  throwError: PropTypes.func,\r\n};\r\n\r\nexport default withSpectraViewer(withStyles(styles)(OperationsTab));\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\nimport SwapVertIcon from \"@mui/icons-material/SwapVert\";\r\n\r\nimport { v4 as uuidv4 } from \"uuid\";\r\n\r\nimport {\r\n  Button,\r\n  FormControlLabel,\r\n  Grid,\r\n  MenuItem,\r\n  Radio,\r\n  Table,\r\n  TableBody,\r\n  TableCell,\r\n  TableContainer,\r\n  TableHead,\r\n  TableRow,\r\n  TextField,\r\n  Tooltip,\r\n  Typography,\r\n  Slider,\r\n  Checkbox,\r\n} from \"@mui/material\";\r\n\r\nimport { withSpectraViewer } from \"../../contexts/SpectraViewerContext\";\r\n\r\nconst criteriaLowerBound = 0.0;\r\nconst criteriaUpperBound = 100.0;\r\n\r\nconst xValueRangeMin = 300.0;\r\nconst xValueRangeMax = 400.0;\r\n\r\nconst styles = {\r\n  paddingContainer: {\r\n    padding: 10,\r\n  },\r\n  applyButton: {\r\n    width: \"100%\",\r\n  },\r\n  applyContainer: {\r\n    display: \"grid\",\r\n    overflow: \"hidden\",\r\n  },\r\n  applyBottomContent: {\r\n    borderTop: \"3px solid #EBEBEB\",\r\n    padding: 10,\r\n    \"& button:first-child\": {\r\n      marginBottom: 10,\r\n    },\r\n  },\r\n  selectionContainer: {\r\n    overflow: \"auto\",\r\n    borderTop: \"2px solid #EBEBEB\",\r\n  },\r\n  minMaxInput: {\r\n    marginTop: 10,\r\n  },\r\n};\r\n\r\nconst TooltipTable = withStyles({\r\n  tooltip: {\r\n    background: \"#FFFFFF\",\r\n    border: \"#EBEBEB solid 2px\",\r\n  },\r\n})(Tooltip);\r\n\r\nclass ModelTab extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n    this.state = {\r\n      tabScrollPosition: 0,\r\n      scrollContainerHeight: 1000,\r\n    };\r\n    this.selectionContainerRef = React.createRef();\r\n  }\r\n\r\n  handleScroll = (e) => {\r\n    const element = this.selectionContainerRef.current;\r\n    this.setState({\r\n      tabScrollPosition: e.target.scrollTop,\r\n      scrollContainerHeight: element.clientHeight,\r\n    });\r\n  };\r\n\r\n  /**\r\n   * Rendering only visible models/pcas\r\n   * @param {int} idx Index of option to check\r\n   * @returns {bool} Whether or not the given index is in view\r\n   */\r\n  isInView = (idx) => {\r\n    const pos = 91 + idx * 74; // Pixel offset\r\n    return (\r\n      pos + 75 >= this.state.tabScrollPosition &&\r\n      pos <= this.state.tabScrollPosition + this.state.scrollContainerHeight\r\n    );\r\n  };\r\n\r\n  componentDidMount = () => {\r\n    if (this.selectionContainerRef.current) {\r\n      this.selectionContainerRef.current.addEventListener(\r\n        \"scroll\",\r\n        this.handleScroll\r\n      );\r\n    }\r\n  };\r\n\r\n  componentWillUnmount = () => {\r\n    if (this.selectionContainerRef.current) {\r\n      this.selectionContainerRef.current.removeEventListener(\r\n        \"scroll\",\r\n        this.handleScroll\r\n      );\r\n    }\r\n  };\r\n\r\n  /**\r\n   * Select a pca. Deselect previously selected pca and/or models.\r\n   * @param {Clickenvent} event Clickevent when selecting pca.\r\n   * @param {int} idx Index of selected pca in list of pcas.\r\n   */\r\n  onPCASelection = (event, idx) => {\r\n    // Must be adjusted together with backend\r\n    const passingCriteria = [\r\n      \"r2\",\r\n      \"mse\",\r\n      \"rmse\",\r\n      \"expl_var\",\r\n      \"max_err\",\r\n      \"mean_abs_err\",\r\n      \"mape\",\r\n      \"med_abs_err\",\r\n    ];\r\n\r\n    if (event.target.value) {\r\n      this.props.spectraViewer.setState({\r\n        selectedPca: idx,\r\n        selectedPcaId: this.props.spectraViewer.pcas[idx].id,\r\n        selectedModelIdx: null,\r\n        selectedModelName: null,\r\n        passingCriteria,\r\n        passingCriteria_idx: 0,\r\n      });\r\n    }\r\n  };\r\n\r\n  /**\r\n   * Select a model. Deselect previously selected model and/or pcas.\r\n   * @param {Clickenvent} event Clickevent when selecting model.\r\n   * @param {int} idx Index of selected model in list of models.\r\n   */\r\n  onModelSelection = (event, idx) => {\r\n    const model = this.props.spectraViewer.models[idx];\r\n\r\n    // Analysis: Set passing criteria in accordance with selected model\r\n    if (\r\n      model.versions[model.selectedVersionIdx].modeltype === \"spectra-analysis\"\r\n    ) {\r\n      let passingCriteria = [];\r\n      model.versions[model.selectedVersionIdx].substances?.forEach(\r\n        (substance) => {\r\n          passingCriteria.push(\r\n            substance.name + \" Probability\", // Must be adjusted together with backend\r\n            substance.name + \" Pred. Concentration\" // Must be adjusted together with backend\r\n          );\r\n        }\r\n      );\r\n      if (event.target.value) {\r\n        this.props.spectraViewer.setState({\r\n          selectedPca: null,\r\n          selectedPcaId: null,\r\n          selectedModelIdx: idx,\r\n          selectedModelName: model.name,\r\n          passingCriteria,\r\n          passingCriteria_idx: 0,\r\n        });\r\n      }\r\n    }\r\n    // Prediction: Set prediction susbtances options\r\n    else if (\r\n      model.versions[model.selectedVersionIdx].modeltype === \"spectra-predict\"\r\n    ) {\r\n      const oldSettings = this.props.spectraViewer.spectraPredictionSettings;\r\n      let spectraPredictionSettings = model.versions[\r\n        model.selectedVersionIdx\r\n      ].substances.map((substance) => {\r\n        const foundIdx = oldSettings.findIndex(\r\n          (setting) => setting.substance === substance.name\r\n        );\r\n        return foundIdx >= 0\r\n          ? {\r\n              substance: substance.name,\r\n              concentration: oldSettings[foundIdx].concentration,\r\n            }\r\n          : { substance: substance.name, concentration: 0.0 };\r\n      });\r\n      if (event.target.value) {\r\n        this.props.spectraViewer.setState({\r\n          selectedPca: null,\r\n          selectedPcaId: null,\r\n          selectedModelIdx: idx,\r\n          selectedModelName: model.name,\r\n          passingCriteria: [],\r\n          passingCriteria_idx: null,\r\n          spectraPredictionSettings,\r\n        });\r\n      }\r\n    }\r\n  };\r\n\r\n  /**\r\n   * Begin PCA analysis for the selected spectrum adn PCA model\r\n   */\r\n  onPcaAnalysis = () => {\r\n    if (\r\n      this.props.spectraViewer.rawSpectra[\r\n        this.props.spectraViewer.selectedSpectrum\r\n      ].isTemporary\r\n    ) {\r\n      window.showWarningSnackbar(\r\n        `Action not possible with temporary spectrum \"${\r\n          this.props.spectraViewer.rawSpectra[\r\n            this.props.spectraViewer.selectedSpectrum\r\n          ].name\r\n        }\"`\r\n      );\r\n      return;\r\n    }\r\n    this.props.requestData(\"true_approx_scores\");\r\n    this.props.project.type === \"ESRTraining\" && this.props.setActiveTab(3);\r\n    this.props.project.type === \"ESREvaluation\" && this.props.setActiveTab(2);\r\n  };\r\n\r\n  /**\r\n   * Predict spectrum for the given settings\r\n   */\r\n  onPredictSpectrum = () => {\r\n    this.props.requestData(\"predict_spectrum\");\r\n    this.props.setActiveTab(0);\r\n  };\r\n\r\n  /**\r\n   * Generate table with pca\r\n   * @param {JSON} pca PCA object\r\n   * @param {int} idx Index of the pca in the pca list\r\n   * @returns interactive table with pcas\r\n   */\r\n  pcaStats = (pca, idx) => {\r\n    return (\r\n      <TooltipTable\r\n        arrow\r\n        interactive=\"true\"\r\n        placement=\"left\"\r\n        key={idx}\r\n        title={\r\n          <TableContainer>\r\n            <Table>\r\n              {this.isInView(idx) && (\r\n                <TableBody>\r\n                  {/* Substances used for PCA */}\r\n                  <TableRow key=\"substances\">\r\n                    <TableCell>Substances</TableCell>\r\n                    <TableCell>\r\n                      {pca.substances\r\n                        .reduce((result, substance) => {\r\n                          return `${result}${substance.name}, `;\r\n                        }, \"\")\r\n                        .slice(0, -2)}\r\n                    </TableCell>\r\n                  </TableRow>\r\n                  {/* Operations used for PCA */}\r\n                  <TableRow key=\"ops\">\r\n                    <TableCell>Preprocessing</TableCell>\r\n                    <TableCell>\r\n                      {/* More than the simple scores */}\r\n                      {pca.preprocessing.length === 1\r\n                        ? \"none\"\r\n                        : pca.preprocessing\r\n                            .slice(0, pca.preprocessing.length - 1)\r\n                            .reduce((result, operation) => {\r\n                              return `${result}${operation[0]}: ${operation[1]}, `;\r\n                            }, \"\")\r\n                            .slice(0, -2)}\r\n                    </TableCell>\r\n                  </TableRow>\r\n                  <TableRow key=\"scores\">\r\n                    <TableCell>Scores</TableCell>\r\n                    <TableCell>{pca.used_scores}</TableCell>\r\n                  </TableRow>\r\n                  {/* Areas */}\r\n                  <TableRow key=\"areas\">\r\n                    <TableCell>Areas</TableCell>\r\n                    <TableCell>\r\n                      {pca.areas.length !== 0\r\n                        ? pca.areas\r\n                            .reduce((result, area) => {\r\n                              return `${result}[${Number(area[0]).toFixed(\r\n                                2\r\n                              )}, ${Number(area[1]).toFixed(2)}], `;\r\n                            }, \"\")\r\n                            .slice(0, -2)\r\n                        : \"full\"}\r\n                    </TableCell>\r\n                  </TableRow>\r\n                  {/* No. of Features used for PCA */}\r\n                  <TableRow key=\"features\">\r\n                    <TableCell>No. of Features</TableCell>\r\n                    <TableCell>{pca.features}</TableCell>\r\n                  </TableRow>\r\n                  {/* Results of PCA */}\r\n                  {Object.entries(pca.result).map(([key, value]) => {\r\n                    return (\r\n                      <TableRow key={key} label={key}>\r\n                        <TableCell>{key}</TableCell>\r\n                        <TableCell>{Number(value).toFixed(6)}</TableCell>\r\n                      </TableRow>\r\n                    );\r\n                  })}\r\n                </TableBody>\r\n              )}\r\n            </Table>\r\n          </TableContainer>\r\n        }\r\n      >\r\n        <TableRow key={pca.id} onClick={(e) => this.onPCASelection(e, idx)}>\r\n          {this.isInView(idx) ? (\r\n            <React.Fragment>\r\n              <TableCell component=\"th\" scope=\"row\">\r\n                {/* Radio Button */}\r\n                <FormControlLabel\r\n                  value={idx}\r\n                  control={\r\n                    <Radio\r\n                      checked={\r\n                        pca.id === this.props.spectraViewer.selectedPcaId\r\n                      }\r\n                    />\r\n                  }\r\n                  label=\"\"\r\n                ></FormControlLabel>\r\n              </TableCell>\r\n              <TableCell component=\"th\" scope=\"row\">\r\n                {/* Substances */}\r\n                {pca.substances\r\n                  .reduce((result, substance) => {\r\n                    return `${result} ${substance.name},`;\r\n                  }, \"\")\r\n                  .slice(0, -1)}\r\n              </TableCell>\r\n              <TableCell component=\"th\" scope=\"row\">\r\n                {/* R^2 Value */}\r\n                {Number(pca.result.r2).toFixed(6)}\r\n              </TableCell>\r\n            </React.Fragment>\r\n          ) : (\r\n            <TableCell\r\n              style={{ height: 74 }}\r\n              component=\"th\"\r\n              scope=\"row\"\r\n            ></TableCell>\r\n          )}\r\n        </TableRow>\r\n      </TooltipTable>\r\n    );\r\n  };\r\n\r\n  /**\r\n   * Generate table with models\r\n   * @param {JSON} mode Model object\r\n   * @param {int} idx Index of the model in the model list\r\n   * @returns interactive table with model\r\n   */\r\n  modelStats = (model, idx) => {\r\n    return (\r\n      <TooltipTable\r\n        arrow\r\n        interactive=\"true\"\r\n        placement=\"left\"\r\n        key={uuidv4()}\r\n        title={\r\n          <TableContainer>\r\n            <Table>\r\n              <TableBody>\r\n                {/* Substances used for PCA */}\r\n                <TableRow key=\"substances\">\r\n                  <TableCell>Substances</TableCell>\r\n                  <TableCell>\r\n                    {model.versions[model.selectedVersionIdx].substances\r\n                      ?.map((subst) => subst.name)\r\n                      .join(\", \")}\r\n                  </TableCell>\r\n                </TableRow>\r\n                {/* Time created */}\r\n                <TableRow key=\"time\">\r\n                  <TableCell>Creation time</TableCell>\r\n                  <TableCell>\r\n                    {model.versions[model.selectedVersionIdx].datetime}\r\n                  </TableCell>\r\n                </TableRow>\r\n              </TableBody>\r\n            </Table>\r\n          </TableContainer>\r\n        }\r\n      >\r\n        <TableRow key={model.id} onClick={(e) => this.onModelSelection(e, idx)}>\r\n          <TableCell component=\"th\" scope=\"row\">\r\n            {/* Radio Button */}\r\n            <FormControlLabel\r\n              value={idx}\r\n              control={\r\n                <Radio\r\n                  checked={\r\n                    model.name === this.props.spectraViewer.selectedModelName\r\n                  }\r\n                />\r\n              }\r\n              label=\"\"\r\n            ></FormControlLabel>\r\n          </TableCell>\r\n          <TableCell component=\"th\" scope=\"row\">\r\n            {/* Substances */}\r\n            {model.versions[model.selectedVersionIdx].substances\r\n              ?.map((subst) => subst.name)\r\n              .join(\", \")}\r\n          </TableCell>\r\n          <TableCell component=\"th\" scope=\"row\">\r\n            {/* Version */}\r\n            {model.versions.length > 1 ? (\r\n              // Version-selection dropdown\r\n              <TextField\r\n                select\r\n                label=\"Version\"\r\n                value={model.versions[model.selectedVersionIdx].label}\r\n                onChange={(event) => {\r\n                  // Update selected version in models\r\n                  let models = this.props.spectraViewer.models;\r\n                  models[idx].selectedVersionIdx = models[\r\n                    idx\r\n                  ].versions.findIndex(\r\n                    (version) => version.label === event.target.value\r\n                  );\r\n                  this.props.spectraViewer.setState({\r\n                    models,\r\n                  });\r\n                  this.onModelSelection(event, idx);\r\n                }}\r\n              >\r\n                {model.versions.map((version, idx) => (\r\n                  <MenuItem key={idx} value={version.label}>\r\n                    {version.label}\r\n                  </MenuItem>\r\n                ))}\r\n              </TextField>\r\n            ) : (\r\n              model.versions[model.selectedVersionIdx].label\r\n            )}\r\n          </TableCell>\r\n        </TableRow>\r\n      </TooltipTable>\r\n    );\r\n  };\r\n\r\n  /**\r\n   * Save the new upper and lower limits for selection criteria.\r\n   * Will not go under the lower and over the upper bound set above (Usually 0 and 1).\r\n   * @param {Array} newValue The new upper and lower limits to set for the criteria as array [min, max].\r\n   */\r\n  handleChangeCriteriaLimits = (newValue) => {\r\n    this.props.spectraViewer.setState({\r\n      passingCriteria_min: Math.max(Math.min(...newValue), criteriaLowerBound),\r\n      passingCriteria_max: Math.min(Math.max(...newValue), criteriaUpperBound),\r\n    });\r\n  };\r\n\r\n  /**\r\n   * Set substances to predict and their respective concentrations.\r\n   * @param {String} substance Name of the substance\r\n   * @param {Number} concentration Concentration as a value between 0 and 100%\r\n   */\r\n  handleChangePredictionSettings = (substance, concentration) => {\r\n    let { spectraPredictionSettings } = this.props.spectraViewer;\r\n\r\n    // Limit concentration to allowed values\r\n    concentration = Math.max(\r\n      Math.min(concentration, criteriaUpperBound),\r\n      criteriaLowerBound\r\n    );\r\n\r\n    // Check if value already exists, if found, update it, otherwise add it\r\n    const foundIdx = spectraPredictionSettings.findIndex(\r\n      (setting) => setting.substance === substance\r\n    );\r\n    if (foundIdx >= 0) {\r\n      spectraPredictionSettings[foundIdx].concentration = concentration;\r\n    } else {\r\n      spectraPredictionSettings.push({\r\n        substance: substance,\r\n        concentration: concentration,\r\n      });\r\n    }\r\n\r\n    // Update settings\r\n    this.props.spectraViewer.setState({ spectraPredictionSettings });\r\n  };\r\n\r\n  /**\r\n   * Set min and max values for the x-values range if user wants to set this manually\r\n   * @param {Array} xValueMinMax Array with the minimum and maximum x-value\r\n   */\r\n  handleChangeManualXRange = (xValueMinMax) => {\r\n    // Update settings\r\n    this.props.spectraViewer.setState({ xValueMinMax });\r\n  };\r\n\r\n  /**\r\n   * Component of passing criteria settings, moved out fo render for visibility\r\n   * @returns Passing criteria settings element, wrapped in <div/>\r\n   */\r\n  passingCriteriaSettings = () => {\r\n    const { classes, spectraViewer } = this.props;\r\n    return (\r\n      // Set pass/fail parameters for spectra\r\n      <div style={{ maxHeight: 300 }} className={classes.applyBottomContent}>\r\n        <Typography variant=\"h6\">Passing Criteria</Typography>\r\n        {/* Criteria selection | Limit Entry */}\r\n        <Grid className={classes.minMaxInput} container spacing={1}>\r\n          <Grid item xs={6}>\r\n            <TextField\r\n              name=\"Textfield\"\r\n              select\r\n              label=\"Criteria\"\r\n              value={\r\n                spectraViewer.passingCriteria[\r\n                  spectraViewer.passingCriteria_idx\r\n                ] ?? \"\"\r\n              }\r\n              onChange={(event) => {\r\n                let targetIndex = spectraViewer.passingCriteria.findIndex(\r\n                  (criterium) => criterium === event.target.value\r\n                );\r\n                this.props.spectraViewer.setState({\r\n                  passingCriteria_idx: targetIndex,\r\n                });\r\n              }}\r\n              fullWidth={true}\r\n              style={{ minWidth: 150 }}\r\n            >\r\n              {spectraViewer.passingCriteria.map((criterium) => (\r\n                <MenuItem key={criterium} value={criterium}>\r\n                  {criterium}\r\n                </MenuItem>\r\n              ))}\r\n            </TextField>\r\n          </Grid>\r\n          <Grid item xs={3}>\r\n            {/* Minimum selection */}\r\n            <TextField\r\n              name=\"Textfield\"\r\n              label=\"Min\"\r\n              value={spectraViewer.passingCriteria_min}\r\n              onChange={(event) =>\r\n                this.handleChangeCriteriaLimits([\r\n                  Number(event.target.value),\r\n                  spectraViewer.passingCriteria_max,\r\n                ])\r\n              }\r\n              fullWidth={true}\r\n              inputProps={{\r\n                min: criteriaLowerBound,\r\n                max: criteriaUpperBound,\r\n                type: \"number\",\r\n                step: 1e-1,\r\n              }}\r\n            />\r\n          </Grid>\r\n\r\n          <Grid item xs={3}>\r\n            <TextField\r\n              name=\"Textfield\"\r\n              label=\"Max\"\r\n              value={spectraViewer.passingCriteria_max}\r\n              onChange={(event) =>\r\n                this.handleChangeCriteriaLimits([\r\n                  spectraViewer.passingCriteria_min,\r\n                  Number(event.target.value),\r\n                ])\r\n              }\r\n              fullWidth={true}\r\n              inputProps={{\r\n                min: criteriaLowerBound,\r\n                max: criteriaUpperBound,\r\n                type: \"number\",\r\n                step: 1e-1,\r\n              }}\r\n            />\r\n          </Grid>\r\n        </Grid>\r\n      </div>\r\n    );\r\n  };\r\n\r\n  /**\r\n   * Component containing predition entry settings\r\n   * @returns spectra prediction element, wrapped in <div/>\r\n   */\r\n  spectraPreditionSettings = () => {\r\n    const { classes, spectraViewer } = this.props;\r\n    // const model = spectraViewer.models[spectraViewer.selectedModelIdx];\r\n    const model = spectraViewer.models[0]; // TODO: Change to line above\r\n    const modelVersion = model?.versions[model.selectedVersionIdx];\r\n    return (\r\n      <div\r\n        style={{ maxHeight: 300, overflowY: \"auto\" }}\r\n        className={classes.applyBottomContent}\r\n      >\r\n        <Typography variant=\"h6\">Prediction Settings</Typography>\r\n        <Grid className={classes.minMaxInput} container spacing={1}>\r\n          {modelVersion?.substances.map((substance) => {\r\n            return (\r\n              <Grid item xs={3} key={substance.name}>\r\n                <TextField\r\n                  name=\"Textfield\"\r\n                  label={substance.name}\r\n                  fullWidth={true}\r\n                  inputProps={{\r\n                    min: criteriaLowerBound,\r\n                    max: criteriaUpperBound,\r\n                    type: \"number\",\r\n                    step: 1e-1,\r\n                  }}\r\n                  onChange={(e) => {\r\n                    this.handleChangePredictionSettings(\r\n                      substance.name,\r\n                      Number(e.target.value)\r\n                    );\r\n                  }}\r\n                  value={\r\n                    spectraViewer.spectraPredictionSettings.find(\r\n                      (setting) => setting.substance === substance.name\r\n                    )?.concentration ?? 0.0\r\n                  }\r\n                ></TextField>\r\n              </Grid>\r\n            );\r\n          })}\r\n        </Grid>\r\n        {spectraViewer.selectedPca == null &&\r\n          spectraViewer.passingCriteria_idx === null &&\r\n          spectraViewer.selectedModelIdx !== null && (\r\n            <FormControlLabel\r\n              control={\r\n                <Checkbox\r\n                  name=\"CheckboxXRange\"\r\n                  color=\"primary\"\r\n                  checked={spectraViewer.setXRangeManually}\r\n                  onChange={(e) => {\r\n                    spectraViewer.setState({\r\n                      setXRangeManually: e.target.checked,\r\n                    });\r\n                  }}\r\n                />\r\n              }\r\n              label={\"set x-value range manually\"}\r\n            />\r\n          )}\r\n\r\n        {spectraViewer.setXRangeManually && (\r\n          <Grid container spacing={2} alignItems=\"center\">\r\n            <Grid item xs={2}>\r\n              <TextField\r\n                name=\"Textfield\"\r\n                variant=\"standard\"\r\n                size=\"small\"\r\n                style={styles.input}\r\n                value={spectraViewer.xValueMinMax[0]}\r\n                margin=\"dense\"\r\n              />\r\n            </Grid>\r\n            <Grid item xs={6}>\r\n              <Slider\r\n                min={xValueRangeMin}\r\n                max={xValueRangeMax}\r\n                value={[\r\n                  spectraViewer.xValueMinMax[0],\r\n                  spectraViewer.xValueMinMax[1],\r\n                ]}\r\n                onChange={(e) => {\r\n                  this.handleChangeManualXRange(e.target.value);\r\n                }}\r\n              />\r\n            </Grid>\r\n            <Grid item xs={2}>\r\n              <TextField\r\n                name=\"Textfield\"\r\n                variant=\"standard\"\r\n                size=\"small\"\r\n                style={styles.input}\r\n                value={spectraViewer.xValueMinMax[1]}\r\n                margin=\"dense\"\r\n              />\r\n            </Grid>\r\n          </Grid>\r\n        )}\r\n      </div>\r\n    );\r\n  };\r\n\r\n  render() {\r\n    const { classes, spectraViewer } = this.props;\r\n    return (\r\n      <div\r\n        style={{\r\n          gridTemplateRows:\r\n            this.props.project.type === \"ESREvaluation\"\r\n              ? \"1fr 1fr auto\"\r\n              : \"1fr auto\",\r\n        }}\r\n        className={classes.applyContainer}\r\n      >\r\n        <div\r\n          className={classes.selectionContainer}\r\n          ref={this.selectionContainerRef}\r\n        >\r\n          <Typography variant=\"h5\">PCA Selection</Typography>\r\n          {spectraViewer.pcas?.length !== 0 ? (\r\n            <TableContainer>\r\n              <Table className={classes.table} aria-label=\"simple table\">\r\n                <TableHead>\r\n                  <TableRow>\r\n                    <TableCell>#</TableCell>\r\n                    <TableCell>Substances</TableCell>\r\n                    <TableCell>\r\n                      <SwapVertIcon\r\n                        style={{ cursor: \"pointer\" }}\r\n                        onClick={() =>\r\n                          this.props.spectraViewer.sortPCAs(\r\n                            \"r2\",\r\n                            spectraViewer.pcaOrder === \"asc\" ? \"desc\" : \"asc\"\r\n                          )\r\n                        }\r\n                      ></SwapVertIcon>\r\n                      R²\r\n                    </TableCell>\r\n                  </TableRow>\r\n                </TableHead>\r\n                <TableBody>\r\n                  {spectraViewer.pcas.map((pca, idx) => {\r\n                    return this.pcaStats(pca, idx);\r\n                  })}\r\n                </TableBody>\r\n              </Table>\r\n            </TableContainer>\r\n          ) : (\r\n            <>\r\n              <Typography variant=\"h6\">No PCAs found!</Typography>\r\n              <Typography variant=\"body1\">\r\n                Please use the &quot;ESR Training&quot; module to train PCAs\r\n                with known spectra before validating further unknown ones.\r\n              </Typography>\r\n            </>\r\n          )}\r\n        </div>\r\n        {this.props.project.type === \"ESREvaluation\" && (\r\n          <div\r\n            className={classes.selectionContainer}\r\n            style={{ borderTop: \"3px solid #EBEBEB\" }}\r\n          >\r\n            <Typography variant=\"h5\">Model Selection</Typography>\r\n            {spectraViewer.models?.length !== 0 ? (\r\n              <TableContainer>\r\n                <Table className={classes.table} aria-label=\"simple table\">\r\n                  <TableHead>\r\n                    <TableRow>\r\n                      <TableCell>#</TableCell>\r\n                      <TableCell>Substances</TableCell>\r\n                      <TableCell>Version</TableCell>\r\n                    </TableRow>\r\n                  </TableHead>\r\n                  <TableBody>\r\n                    {spectraViewer.models.map((model, idx) => {\r\n                      return this.modelStats(model, idx);\r\n                    })}\r\n                  </TableBody>\r\n                </Table>\r\n              </TableContainer>\r\n            ) : (\r\n              <>\r\n                <Typography variant=\"h6\">No AI models found!</Typography>\r\n                <Typography variant=\"body1\">\r\n                  Please import AI models before validating further unknown\r\n                  ones.\r\n                </Typography>\r\n              </>\r\n            )}\r\n          </div>\r\n        )}\r\n        {this.props.initialized &&\r\n          this.props.project.type === \"ESREvaluation\" &&\r\n          // PCA or analysis model selected\r\n          (spectraViewer.selectedPca !== null ? (\r\n            this.passingCriteriaSettings()\r\n          ) : // AI model selected\r\n          spectraViewer.selectedModelIdx !== null ? (\r\n            spectraViewer.passingCriteria_idx === null ? (\r\n              // Prediction Model\r\n              this.spectraPreditionSettings()\r\n            ) : (\r\n              // Analysis model\r\n              this.passingCriteriaSettings()\r\n            )\r\n          ) : (\r\n            // Nothing or something else selected\r\n            <div />\r\n          ))}\r\n        {(this.props.initialized ||\r\n          this.props.project.type === \"ESREvaluation\") && (\r\n          <div className={classes.applyBottomContent}>\r\n            <Button\r\n              variant=\"contained\"\r\n              color=\"secondary\"\r\n              style={{ marginBottom: \"10px\" }}\r\n              className={classes.applyButton}\r\n              disabled={\r\n                // No PCAs selected\r\n                spectraViewer.selectedPca === null &&\r\n                // No Prediction AI Models selected\r\n                (spectraViewer.passingCriteria_idx !== null ||\r\n                  spectraViewer.selectedModelIdx === null)\r\n              }\r\n              onClick={() => {\r\n                // PCA selected\r\n                if (spectraViewer.selectedPca !== null) {\r\n                  this.onPcaAnalysis();\r\n                }\r\n                // Predcition model selected\r\n                else if (\r\n                  spectraViewer.passingCriteria_idx === null &&\r\n                  spectraViewer.selectedModelIdx !== null\r\n                ) {\r\n                  this.onPredictSpectrum();\r\n                }\r\n              }}\r\n            >\r\n              {\r\n                // PCA selected\r\n                spectraViewer.selectedPca !== null\r\n                  ? \"Analyse Selected Spectrum with Selected PCA\"\r\n                  : // Predcition model selected\r\n                  spectraViewer.passingCriteria_idx === null &&\r\n                    spectraViewer.selectedModelIdx !== null\r\n                  ? \"Predict Spectrum\"\r\n                  : // Nothing or something else selected\r\n                    \"Please select a PCA or prediction model\"\r\n              }\r\n            </Button>\r\n            <Button\r\n              variant=\"contained\"\r\n              color=\"primary\"\r\n              className={classes.applyButton}\r\n              disabled={\r\n                // No PCA selected\r\n                spectraViewer.selectedPca === null &&\r\n                // No Analysis model selected\r\n                spectraViewer.passingCriteria_idx === null\r\n              }\r\n              onClick={() => {\r\n                this.props.onSave();\r\n                if (this.props.project.type === \"ESREvaluation\") {\r\n                  // Check whether to use PCAs or AI models\r\n                  if (spectraViewer.selectedPca !== null) {\r\n                    this.props.requestData(\"pca_evaluation\");\r\n                  } else if (\r\n                    spectraViewer.selectedModelIdx !== null &&\r\n                    spectraViewer.passingCriteria_idx !== null\r\n                  ) {\r\n                    // Analysis ai model\r\n                    this.props.requestData(\"ai_evaluation\");\r\n                  }\r\n                  this.props.setActiveTab(0);\r\n                } else if (this.props.project.type === \"ESRTraining\") {\r\n                  this.props.requestData(\"pca_chosen\");\r\n                  // Return to home screen\r\n                  this.props.returnHome();\r\n                }\r\n              }}\r\n            >\r\n              Select\r\n            </Button>\r\n          </div>\r\n        )}\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nModelTab.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  spectraViewer: PropTypes.object.isRequired,\r\n  project: PropTypes.object,\r\n  initialized: PropTypes.bool,\r\n  onSave: PropTypes.func,\r\n  requestData: PropTypes.func,\r\n  setActiveTab: PropTypes.func,\r\n  returnHome: PropTypes.func,\r\n};\r\n\r\nexport default withSpectraViewer(withStyles(styles)(ModelTab));\r\n","import React, { Component } from \"react\";\r\nimport { PropTypes } from \"prop-types\";\r\n\r\nimport {\r\n  ListItem,\r\n  IconButton,\r\n  ListItemText,\r\n  Tooltip,\r\n  Typography,\r\n} from \"@mui/material\";\r\nimport { VisibilityOff, Visibility } from \"@mui/icons-material\";\r\n\r\nimport { withSpectraViewer } from \"../../contexts/SpectraViewerContext\";\r\n\r\nclass AnalysisTab extends Component {\r\n  graph_names = [`Original`, `Preprocessed`, `Approximated`, `Residual`];\r\n\r\n  constructor(props) {\r\n    super(props);\r\n    this.state = {};\r\n  }\r\n\r\n  componentDidMount() {\r\n    this.props.showAnalysisResults();\r\n  }\r\n\r\n  /**\r\n   * The button to display for each item, indicating its visibility.\r\n   * @param {boolean} checked Whether the item is checked.\r\n   * @param {Function} func The function to execute with func(name, checked) upon button press.\r\n   * @param {string} name The name of the dataseries the visibility refers to.\r\n   * @param {Object} iconOn The icon to diplay when series is visible.\r\n   * @param {Object} iconOff The icon to diplay when series is hidden.\r\n   * @returns\r\n   */\r\n  visbilityButton = (checked, func, name, iconOn, iconOff) => {\r\n    return (\r\n      <Tooltip\r\n        disableInteractive\r\n        title={checked ? `Hide ${name}` : `Show ${name}`}\r\n      >\r\n        <IconButton\r\n          onClick={(e) => {\r\n            func(name, checked);\r\n            e.stopPropagation();\r\n          }}\r\n          size=\"large\"\r\n        >\r\n          {checked ? iconOn : iconOff}\r\n        </IconButton>\r\n      </Tooltip>\r\n    );\r\n  };\r\n\r\n  onApproxToggleVisibility = (name, checked) => {\r\n    // Enables/Disables all series belonging to a single approximation\r\n    this.props.datasets\r\n      .filter((element) => this.graph_names.includes(element.name))\r\n      .forEach((element) => {\r\n        // On initial load, the spectra are set to undefined\r\n        if (element.checked === checked || element.checked === undefined) {\r\n          this.props.toggleLegend(element.name);\r\n        }\r\n      });\r\n  };\r\n\r\n  /**\r\n   * Checks if a series calles by name is currently visible.\r\n   * @param {string} name The name of the dataseries in the spectrum.\r\n   * @returns {boolean} Is the series checked, i.e. currently visible?\r\n   */\r\n  checkForChecked = (name) => {\r\n    let element = this.props.datasets.filter((element) =>\r\n      element.name.startsWith(name)\r\n    )[0];\r\n    return element ? element.checked : false;\r\n  };\r\n\r\n  /**\r\n   * Checks if any item of a group is checked.\r\n   * @param {object} item Group of series referring to a single starting spectrum. Include original, preprocessed, approximation, residual.\r\n   * @returns {boolean} Are any of the above checked?\r\n   */\r\n  checkForAnyChecked = (item) => {\r\n    let checked = false;\r\n    this.props.datasets\r\n      .filter((element) => this.graph_names.includes(element.name))\r\n      .forEach((element) => {\r\n        if (element.checked) {\r\n          checked = true;\r\n        }\r\n      });\r\n\r\n    item.checked = checked;\r\n    return checked;\r\n  };\r\n\r\n  render() {\r\n    return this.props.spectraViewer.selectedPca !== null &&\r\n      this.props.spectraViewer.focusedPca.info !== null ? (\r\n      <div style={{ overflow: \"auto\" }}>\r\n        {/* Spectrum Analysis Information */}\r\n        {this.props.spectraViewer.selectedPca !== null &&\r\n          this.props.spectraViewer.focusedPca.approximations.map(\r\n            (approximation, idx) => {\r\n              let orig = `Original`;\r\n              let pre = `Preprocessed`;\r\n              let approx = `Approximated`;\r\n              let resid = `Residual`;\r\n              return (\r\n                <React.Fragment key={idx}>\r\n                  <ListItem\r\n                    button\r\n                    key={555}\r\n                    selected={\r\n                      this.props.spectraViewer.selectedProcessedSpectrum === idx\r\n                    }\r\n                    style={{\r\n                      paddingBottom: 0,\r\n                      paddingTop: 0,\r\n                    }}\r\n                    onClick={() =>\r\n                      this.props.spectraViewer.setState({\r\n                        selectedProcessedSpectrum: idx,\r\n                      })\r\n                    }\r\n                  >\r\n                    <span style={{ width: \"100%\", minWidth: 0 }}>\r\n                      <ListItemText\r\n                        style={{\r\n                          padding: \"0px\",\r\n                        }}\r\n                        primary={\r\n                          <div\r\n                            style={{\r\n                              textOverflow: \"ellipsis\",\r\n                              overflow: \"hidden\",\r\n                              whiteSpace: \"nowrap\",\r\n                            }}\r\n                          >\r\n                            {approximation.name}\r\n                          </div>\r\n                        }\r\n                      />\r\n                    </span>\r\n                    {/* Full visibility toggle */}\r\n                    {this.visbilityButton(\r\n                      this.checkForAnyChecked(approximation),\r\n                      this.onApproxToggleVisibility,\r\n                      approximation.name,\r\n                      <Visibility />,\r\n                      <VisibilityOff />\r\n                    )}\r\n                    {/* Original Spectrum Visibility */}\r\n                    {this.visbilityButton(\r\n                      this.checkForChecked(orig),\r\n                      this.props.toggleLegend,\r\n                      orig,\r\n                      <Visibility />,\r\n                      <VisibilityOff />\r\n                    )}\r\n                    {/* Preprocessed Spectra Visibility */}\r\n                    {this.visbilityButton(\r\n                      this.checkForChecked(pre),\r\n                      this.props.toggleLegend,\r\n                      pre,\r\n                      <Visibility />,\r\n                      <VisibilityOff />\r\n                    )}\r\n                    {/* Approximated Spectra visibility */}\r\n                    {this.visbilityButton(\r\n                      this.checkForChecked(approx),\r\n                      this.props.toggleLegend,\r\n                      approx,\r\n                      <Visibility />,\r\n                      <VisibilityOff />\r\n                    )}\r\n                    {/* Residual Spectra visibilty */}\r\n                    {this.visbilityButton(\r\n                      this.checkForChecked(resid),\r\n                      this.props.toggleLegend,\r\n                      resid,\r\n                      <Visibility />,\r\n                      <VisibilityOff />\r\n                    )}\r\n                  </ListItem>\r\n                </React.Fragment>\r\n              );\r\n            }\r\n          )}\r\n        {/* PCA Analysis Information */}\r\n        {this.props.spectraViewer.focusedPca.scores.map((score, idx) => {\r\n          return (\r\n            <React.Fragment key={idx}>\r\n              <ListItem\r\n                button\r\n                key={555}\r\n                selected={this.props.spectraViewer.selectedPcaScore === idx}\r\n                style={{\r\n                  paddingBottom: 0,\r\n                  paddingTop: 0,\r\n                }}\r\n                onClick={() =>\r\n                  this.props.spectraViewer.setState({ selectedPcaScore: idx })\r\n                }\r\n              >\r\n                <span style={{ width: \"100%\", minWidth: 0 }}>\r\n                  <ListItemText\r\n                    style={{\r\n                      padding: \"0px\",\r\n                    }}\r\n                    primary={\r\n                      <div\r\n                        style={{\r\n                          textOverflow: \"ellipsis\",\r\n                          overflow: \"hidden\",\r\n                          whiteSpace: \"nowrap\",\r\n                        }}\r\n                      >\r\n                        {score.name}\r\n                      </div>\r\n                    }\r\n                  />\r\n                </span>\r\n                {this.visbilityButton(\r\n                  this.checkForChecked(score.name),\r\n                  this.props.toggleLegend,\r\n                  score.name,\r\n                  <Visibility />,\r\n                  <VisibilityOff />\r\n                )}\r\n              </ListItem>\r\n            </React.Fragment>\r\n          );\r\n        })}\r\n      </div>\r\n    ) : (\r\n      <div>\r\n        <Typography variant=\"h5\">Please select a PCA</Typography>\r\n        <Typography variant=\"body1\">\r\n          Please select a PCA.Choose a PCA from the PCA-Tab and press the\r\n          analyse button at the bottom of the tab. The spectrum selected in the\r\n          spectra tab will then be analysed using the respective pca.\r\n        </Typography>\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nAnalysisTab.propTypes = {\r\n  spectraViewer: PropTypes.object.isRequired,\r\n  datasets: PropTypes.array,\r\n  toggleLegend: PropTypes.func,\r\n  showRawSpectra: PropTypes.func,\r\n  showAnalysisResults: PropTypes.func,\r\n};\r\n\r\nexport default withSpectraViewer(AnalysisTab);\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport withStyles from \"@mui/styles/withStyles\";\r\nimport { withSpectraViewer } from \"../contexts/SpectraViewerContext\";\r\n\r\nimport { Redirect } from \"react-router-dom\";\r\nimport { Tabs, Tab } from \"@mui/material\";\r\nimport { FontAwesomeIcon } from \"@fortawesome/react-fontawesome\";\r\nimport {\r\n  faCog,\r\n  faChartArea,\r\n  faChartLine,\r\n  faCheckCircle,\r\n} from \"@fortawesome/free-solid-svg-icons\";\r\n\r\nimport SpectraTab from \"./SpectraSidebarTabs/SpectraTab\";\r\nimport OperationsTab from \"./SpectraSidebarTabs/OperationsTab\";\r\nimport ModelTab from \"./SpectraSidebarTabs/ModelTab\";\r\nimport AnalysisTab from \"./SpectraSidebarTabs/AnalysisTab\";\r\n\r\nconst styles = {\r\n  root: {\r\n    height: \"100%\",\r\n    display: \"grid\",\r\n    gridTemplateRows: \"auto 1fr\",\r\n    overflow: \"hidden\",\r\n  },\r\n  tab: {\r\n    minWidth: 395 / 3,\r\n    minHeight: 44,\r\n    height: 44,\r\n    paddingBottom: 0,\r\n    paddingTop: 0,\r\n    \"& *\": {\r\n      display: \"inline-block\",\r\n      fontSize: \"16px\",\r\n      lineHeight: \"16px\",\r\n    },\r\n    \"& svg\": {\r\n      marginRight: \"5px\",\r\n      position: \"relative\",\r\n      top: \"4px\",\r\n    },\r\n  },\r\n};\r\n\r\nclass SpectraSideBar extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n    this.state = {\r\n      activeTab: 0,\r\n      returnHome: false,\r\n    };\r\n  }\r\n  handleTabChange = (event, value) => {\r\n    this.setState({ activeTab: value });\r\n  };\r\n\r\n  render() {\r\n    const { classes } = this.props;\r\n    const { activeTab } = this.state;\r\n\r\n    return this.props.project.type === \"ESRTraining\" ? (\r\n      // ESR Training Module\r\n      <div className={classes.root}>\r\n        {/* Return to homescreen by rendering the following line */}\r\n        {this.state.returnHome && <Redirect push to=\"/\" />}\r\n        <Tabs\r\n          //className={`${classes.tabsContainer} ${classes.flexRowContentHeight}`}\r\n          value={activeTab}\r\n          onChange={this.handleTabChange}\r\n          variant=\"fullWidth\"\r\n          indicatorColor=\"primary\"\r\n          textColor=\"primary\"\r\n        >\r\n          <Tab\r\n            className={classes.tab}\r\n            icon={<FontAwesomeIcon icon={faChartArea} size=\"lg\" />}\r\n            label={\r\n              \"Spectra (\" + this.props.spectraViewer.rawSpectra.length + \")\"\r\n            }\r\n          />\r\n          <Tab\r\n            className={classes.tab}\r\n            icon={<FontAwesomeIcon icon={faCog} size=\"lg\" />}\r\n            label=\"Settings\"\r\n          />\r\n          <Tab\r\n            className={classes.tab}\r\n            icon={<FontAwesomeIcon icon={faCheckCircle} size=\"lg\" />}\r\n            label=\"Models\"\r\n          />\r\n          <Tab\r\n            className={classes.tab}\r\n            icon={<FontAwesomeIcon icon={faChartLine} size=\"lg\" />}\r\n            label=\"Analysis\"\r\n          />\r\n        </Tabs>\r\n        {this.state.activeTab === 0 && (\r\n          <SpectraTab\r\n            project={this.props.project}\r\n            datasets={this.props.datasets}\r\n            toggleLegend={this.props.toggleLegend}\r\n            toggleAll={this.props.toggleAll}\r\n            initialized={this.props.initialized}\r\n            updateChartData={this.props.updateChartData}\r\n            setInitialized={this.props.setInitialized}\r\n            showRawSpectra={this.props.showRawSpectra}\r\n            onSave={this.props.onSave}\r\n            returnHome={() => this.setState({ returnHome: true })}\r\n          />\r\n        )}\r\n        {this.state.activeTab === 1 && (\r\n          <OperationsTab\r\n            project={this.props.project}\r\n            requestData={this.props.requestData}\r\n            chart={this.props.chart}\r\n            xAxisData={this.props.xAxisData}\r\n            initialized={this.props.initialized}\r\n            setActiveTab={(tab_no) => this.setState({ activeTab: tab_no })}\r\n            throwError={this.props.throwError}\r\n          />\r\n        )}\r\n        {this.state.activeTab === 2 && (\r\n          <ModelTab\r\n            project={this.props.project}\r\n            initialized={this.props.initialized}\r\n            onSave={this.props.onSave}\r\n            requestData={this.props.requestData}\r\n            setActiveTab={(value) => this.setState({ activeTab: value })}\r\n            returnHome={() => this.setState({ returnHome: true })}\r\n          />\r\n        )}\r\n        {this.state.activeTab === 3 && (\r\n          <AnalysisTab\r\n            datasets={this.props.datasets}\r\n            toggleLegend={this.props.toggleLegend}\r\n            showRawSpectra={this.props.showRawSpectra}\r\n            showAnalysisResults={this.props.showAnalysisResults}\r\n          />\r\n        )}\r\n      </div>\r\n    ) : (\r\n      // ESR Evaluation Module\r\n      <div className={classes.root}>\r\n        {/* Return to homescreen by rendering the following line */}\r\n        {this.state.returnHome && <Redirect push to=\"/\" />}\r\n        <Tabs\r\n          //className={`${classes.tabsContainer} ${classes.flexRowContentHeight}`}\r\n          value={activeTab}\r\n          onChange={this.handleTabChange}\r\n          variant=\"fullWidth\"\r\n          indicatorColor=\"primary\"\r\n          textColor=\"primary\"\r\n        >\r\n          <Tab\r\n            className={classes.tab}\r\n            icon={<FontAwesomeIcon icon={faChartArea} size=\"lg\" />}\r\n            label={\r\n              \"Spectra (\" + this.props.spectraViewer.rawSpectra.length + \")\"\r\n            }\r\n          />\r\n          <Tab\r\n            className={classes.tab}\r\n            icon={<FontAwesomeIcon icon={faCog} size=\"lg\" />}\r\n            label=\"Models\"\r\n          />\r\n          <Tab\r\n            className={classes.tab}\r\n            icon={<FontAwesomeIcon icon={faChartLine} size=\"lg\" />}\r\n            label=\"Analysis\"\r\n          />\r\n        </Tabs>\r\n        {this.state.activeTab === 0 && (\r\n          <SpectraTab\r\n            project={this.props.project}\r\n            datasets={this.props.datasets}\r\n            toggleLegend={this.props.toggleLegend}\r\n            toggleAll={this.props.toggleAll}\r\n            initialized={this.props.initialized}\r\n            updateChartData={this.props.updateChartData}\r\n            setInitialized={this.props.setInitialized}\r\n            showRawSpectra={this.props.showRawSpectra}\r\n            onSave={this.props.onSave}\r\n            returnHome={() => this.setState({ returnHome: true })}\r\n          />\r\n        )}\r\n        {this.state.activeTab === 1 && (\r\n          <ModelTab\r\n            project={this.props.project}\r\n            initialized={this.props.initialized}\r\n            onSave={this.props.onSave}\r\n            requestData={this.props.requestData}\r\n            setActiveTab={(value) => this.setState({ activeTab: value })}\r\n            returnHome={() => this.setState({ returnHome: true })}\r\n          />\r\n        )}\r\n        {this.state.activeTab === 2 && (\r\n          <AnalysisTab\r\n            datasets={this.props.datasets}\r\n            toggleLegend={this.props.toggleLegend}\r\n            showRawSpectra={this.props.showRawSpectra}\r\n            showAnalysisResults={this.props.showAnalysisResults}\r\n          />\r\n        )}\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nSpectraSideBar.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  spectraViewer: PropTypes.object.isRequired,\r\n  project: PropTypes.object,\r\n  xAxisData: PropTypes.object,\r\n  chart: PropTypes.object,\r\n  datasets: PropTypes.array,\r\n  initialized: PropTypes.bool,\r\n  setInitialized: PropTypes.func,\r\n  maxScores: PropTypes.number,\r\n  toggleLegend: PropTypes.func,\r\n  toggleAll: PropTypes.func,\r\n  onChangeMetaData: PropTypes.func,\r\n  requestData: PropTypes.func,\r\n  onSave: PropTypes.func,\r\n  showRawSpectra: PropTypes.func,\r\n  showAnalysisResults: PropTypes.func,\r\n  throwError: PropTypes.func,\r\n  updateChartData: PropTypes.func,\r\n};\r\n\r\nexport default withSpectraViewer(withStyles(styles)(SpectraSideBar));\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport { IconButton, Tooltip, SvgIcon } from \"@mui/material\";\r\nimport { Save } from \"@mui/icons-material\";\r\n\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n\r\nconst styles = (theme) => ({\r\n  root: {\r\n    background: \"white\",\r\n    borderRight: \"5px solid  #EBEBEB\",\r\n    height: \"100%\",\r\n    display: \"grid\",\r\n    gridTemplateRows: \"1fr auto\",\r\n  },\r\n  toolbarButton: {\r\n    width: 40,\r\n  },\r\n  toolbarButtonChecked: {\r\n    width: 40,\r\n    color: theme.palette.primary.main,\r\n  },\r\n});\r\n\r\n// Only the bottom tools, top tools are part of the chart\r\nclass SpectraToolBar extends Component {\r\n  render() {\r\n    const { classes, showResultTable } = this.props;\r\n\r\n    return (\r\n      <div className={classes.root}>\r\n        <div className={classes.topContent}>\r\n          <Tooltip disableInteractive title=\"Open Result\">\r\n            <IconButton\r\n              className={\r\n                showResultTable\r\n                  ? classes.toolbarButtonChecked\r\n                  : classes.toolbarButton\r\n              }\r\n              onClick={this.props.toggleLeftTableContainer}\r\n              size=\"large\"\r\n            >\r\n              <SvgIcon>\r\n                <svg\r\n                  aria-hidden=\"true\"\r\n                  focusable=\"false\"\r\n                  data-prefix=\"fas\"\r\n                  data-icon=\"table\"\r\n                  className=\"svg-inline--fa fa-table fa-w-16\"\r\n                  role=\"img\"\r\n                  xmlns=\"http://www.w3.org/2000/svg\"\r\n                  viewBox=\"0 0 512 512\"\r\n                >\r\n                  <path\r\n                    fill=\"currentColor\"\r\n                    d=\"M464 32H48C21.49 32 0 53.49 0 80v352c0 26.51 21.49 48 48 48h416c26.51 0 48-21.49 48-48V80c0-26.51-21.49-48-48-48zM224 416H64v-96h160v96zm0-160H64v-96h160v96zm224 160H288v-96h160v96zm0-160H288v-96h160v96z\"\r\n                  ></path>\r\n                </svg>\r\n              </SvgIcon>\r\n            </IconButton>\r\n          </Tooltip>\r\n        </div>\r\n        <div className={classes.bottomContent}>\r\n          <Tooltip disableInteractive title=\"Save [Ctrl]+[S]\">\r\n            <IconButton\r\n              className={classes.toolbarButtonChecked}\r\n              onClick={this.props.onSave}\r\n              size=\"large\"\r\n            >\r\n              <Save />\r\n            </IconButton>\r\n          </Tooltip>\r\n        </div>\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nSpectraToolBar.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  showResultTable: PropTypes.bool,\r\n  onSave: PropTypes.func,\r\n  toggleLeftTableContainer: PropTypes.func,\r\n};\r\n\r\nexport default withStyles(styles)(SpectraToolBar);\r\n","// Framework imports\r\nimport { withRouter } from \"react-router-dom\";\r\nimport PropTypes from \"prop-types\";\r\nimport React, { Component } from \"react\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n\r\n// External paackges\r\nimport { Tabs, Tab } from \"@mui/material\";\r\nimport ELineChart from \"./components/ELineChart\";\r\n\r\n// HSA Imports\r\nimport { withSpectraViewer } from \"./contexts/SpectraViewerContext\";\r\nimport { withSpinloader } from \"../common/components/Spinloader\";\r\nimport Backend from \"../common/utils/Backend\";\r\nimport FileParamForm from \"./components/FileParamForm\";\r\nimport LocalHorizontalResizeBorder from \"../common/components/LocalHorizontalResizeBorder\";\r\nimport LocalVerticalResizeBorder from \"../common/components/LocalVerticalResizeBorder\";\r\nimport SpectraBottomTableResults from \"./components/SpectraBottomTableResults\";\r\nimport SpectraLeftTableResults from \"./components/SpectraLeftTableResults\";\r\nimport SpectraResultCharts from \"./components/SpectraResultCharts\";\r\nimport SpectraSideBar from \"./components/SpectraSideBar\";\r\nimport SpectraToolBar from \"./components/SpectraToolBar\";\r\n\r\nconst styles = {\r\n  outerContainer: {\r\n    overflow: \"hidden\",\r\n    position: \"relative\",\r\n    width: \"100%\",\r\n    height: \"100%\",\r\n    background: \"#EBEBEB\",\r\n    display: \"grid\",\r\n  },\r\n  borderBackground: {\r\n    background: \"#EBEBEB\",\r\n  },\r\n  TableContainer: {\r\n    background: \"white\",\r\n    marginRight: 5,\r\n    overflow: \"hidden\",\r\n    width: \"100%\",\r\n    display: \"grid\",\r\n    gridTemplateRows: \"auto 1fr\",\r\n  },\r\n  PreviewContainer: {\r\n    background: \"white\",\r\n  },\r\n  leftTableContainer: {\r\n    overflow: \"hidden\",\r\n    display: \"grid\",\r\n    gridTemplateColumns: \"1fr 5px\",\r\n  },\r\n  bottomTableContainer: {\r\n    overflow: \"hidden\",\r\n    display: \"grid\",\r\n    gridTemplateRows: \"5px 1fr\",\r\n  },\r\n  ToolBarContainer: {\r\n    background: \"white\",\r\n    margin: \"0 5px\",\r\n  },\r\n  SideBarContainer: {\r\n    background: \"white\",\r\n    overflow: \"hidden\",\r\n    display: \"grid\",\r\n    gridTemplateRows: \"1fr auto\",\r\n  },\r\n};\r\n\r\nclass SpectraViewer extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n    this._isMounted = false;\r\n    this.state = {\r\n      initialized: false,\r\n      activeMainTab: 0,\r\n      resultChartTypes: [],\r\n      project: null,\r\n      chart: null,\r\n      datasets: [],\r\n      fileParams: [],\r\n      windowSize: [0, 0],\r\n      maxScores: 0,\r\n      xAxisData: {\r\n        minX: 0,\r\n        maxX: 0,\r\n        stepX: 0.1,\r\n        min: 0,\r\n        max: 0,\r\n      },\r\n      showResultTable: false,\r\n      leftTableWidth: 400,\r\n      bottomTableHeight: 300,\r\n      sideBarWidth: 550,\r\n      mainChartDataShown: null,\r\n      setXRangeManually: true,\r\n      xValueMinMax: [330, 344], // default values\r\n    };\r\n  }\r\n\r\n  /**\r\n   * Initializes top level container containing all elements of the viewer.\r\n   * Loads saved project from backend.\r\n   */\r\n  componentDidMount = () => {\r\n    this._isMounted = true;\r\n    window.addEventListener(\"keydown\", this.keyDown);\r\n    window.addEventListener(\"resize\", () => this.updateDimensions());\r\n    Backend.loadProject(\r\n      {\r\n        id: this.props.id,\r\n      },\r\n      (project) => {\r\n        if (project.projectData) {\r\n          project.metaData = project.projectData.metaData;\r\n          project.name = project.projectData.name;\r\n        } else {\r\n          project.metaData = JSON.parse(project.metaData);\r\n        }\r\n        window.setNavigationbarTitle(\r\n          `${project.name} (${project.viewerConfig.project.label})`\r\n        );\r\n        Backend.getCurrentUser((user) => {\r\n          let areas = this.props.spectraViewer.areas;\r\n          let operationSets = this.props.spectraViewer.operationSets;\r\n          let useSavedCalcs = this.props.spectraViewer.useSavedCalcs;\r\n          let passingCriteria = this.props.spectraViewer.passingCriteria;\r\n          let passingCriteria_idx =\r\n            this.props.spectraViewer.passingCriteria_idx;\r\n          let passingCriteria_min =\r\n            this.props.spectraViewer.passingCriteria_min;\r\n          let passingCriteria_max =\r\n            this.props.spectraViewer.passingCriteria_max;\r\n          let datasets = [];\r\n          let fileParams = [];\r\n          let xAxisData = this.state.xAxisData;\r\n          let setXRangeManually = true;\r\n          let xValueMinMax = [330, 344]; // default values\r\n          if (project.projectData) {\r\n            let simpleParams = JSON.parse(project.projectData.simpleParams);\r\n            useSavedCalcs = simpleParams.useSavedCalcs\r\n              ? simpleParams.useSavedCalcs\r\n              : true;\r\n            areas = simpleParams.areas;\r\n            xAxisData = simpleParams.xAxisData\r\n              ? simpleParams.xAxisData\r\n              : xAxisData;\r\n            fileParams = simpleParams.fileParams ? simpleParams.fileParams : [];\r\n            // Backwards compatibility\r\n            datasets = simpleParams.datasets\r\n              ? simpleParams.datasets\r\n              : simpleParams.legendData;\r\n            operationSets = simpleParams.operationSets\r\n              ? simpleParams.operationSets\r\n              : this.props.spectraViewer.operationSets;\r\n\r\n            passingCriteria = simpleParams.passingCriteria\r\n              ? simpleParams.passingCriteria\r\n              : this.props.spectraViewer.passingCriteria;\r\n\r\n            passingCriteria_idx = simpleParams.passingCriteria_idx\r\n              ? simpleParams.passingCriteria_idx\r\n              : this.props.spectraViewer.passingCriteria_idx;\r\n\r\n            passingCriteria_min = simpleParams.passingCriteria_min\r\n              ? simpleParams.passingCriteria_min\r\n              : this.props.spectraViewer.passingCriteria_max;\r\n\r\n            passingCriteria_max = simpleParams.passingCriteria_max\r\n              ? simpleParams.passingCriteria_max\r\n              : this.props.spectraViewer.passingCriteria_max;\r\n          }\r\n          if (fileParams.length === 0) {\r\n            fileParams = project.files.map((file) => {\r\n              return {\r\n                fileName: file.fileName,\r\n                id: file.id,\r\n                subName: [],\r\n                concentration: [],\r\n              };\r\n            });\r\n          } else if (\r\n            // Check for old format\r\n            typeof fileParams[0].subName === \"string\" ||\r\n            typeof fileParams[0].concentration === \"number\"\r\n          ) {\r\n            // Ensure backwards compatibility with single substance spectra\r\n            fileParams = fileParams.map((file) => {\r\n              // Convert to new, array-based format\r\n              return {\r\n                fileName: file.fileName,\r\n                id: file.id,\r\n                subName: file.subName\r\n                  ? typeof file.subName === \"string\"\r\n                    ? [file.subName]\r\n                    : file.subName\r\n                  : [],\r\n                concentration:\r\n                  file.concentration || file.concentration === 0\r\n                    ? typeof file.concentration === \"number\"\r\n                      ? [file.concentration]\r\n                      : file.concentration\r\n                    : [],\r\n              };\r\n            });\r\n          }\r\n          this.setState({\r\n            xAxisData,\r\n            fileParams,\r\n            initialized: project.projectData !== null,\r\n            areas,\r\n            datasets,\r\n            user: user.fullName,\r\n            project: this.createProjectModel(project, user.fullName),\r\n          });\r\n          this.props.spectraViewer.setState({\r\n            operationSets,\r\n            useSavedCalcs,\r\n            passingCriteria,\r\n            passingCriteria_idx,\r\n            passingCriteria_min,\r\n            passingCriteria_max,\r\n            xValueMinMax,\r\n            setXRangeManually,\r\n          });\r\n        });\r\n      }\r\n    );\r\n  };\r\n\r\n  componentWillUnmount() {\r\n    this._isMounted = false;\r\n    window.removeEventListener(\"keydown\", this.keyDown);\r\n    window.removeEventListener(\"resize\", () => this.updateDimensions());\r\n    this.props.spinloader.hide();\r\n  }\r\n\r\n  updateDimensions = () => {\r\n    this.setState({ windowSize: [window.innerWidth, window.innerHeight] });\r\n    if (this.state.chart) this.state.chart.resize();\r\n  };\r\n  /**\r\n   * handle shortcut\r\n   * @param {ActionEvent} e Event when keyboard button is pressed\r\n   */\r\n  keyDown = (e) => {\r\n    if (e.ctrlKey && e.key === \"s\") {\r\n      this.saveFunction();\r\n      e.preventDefault();\r\n    }\r\n  };\r\n\r\n  /**\r\n   * Gets all numbertype rating criteria from an list of ratedSpectra without duplicates.\r\n   * @param {JSON} ratedSpectra A list of ratings, each containing criteria as keys.\r\n   * @returns {List} All keys (= criteria) as strings without duplicates.\r\n   */\r\n  gatherAllCriteria = (ratedSpectra) => {\r\n    let criteria = [];\r\n    ratedSpectra.forEach(\r\n      (spectrum) =>\r\n        (criteria = criteria.concat(\r\n          Object.keys(spectrum.rating).filter(\r\n            // Only get criterium of type number not yet included in criteria\r\n            (key) =>\r\n              typeof spectrum.rating[key] === \"number\" &&\r\n              criteria.indexOf(key) < 0\r\n          )\r\n        ))\r\n    );\r\n    return criteria;\r\n  };\r\n\r\n  /**\r\n   * Gets data from the backend, depending on the requesttype.\r\n   * @param {string} requestType Can be \"init\", \"update\", \"pca_chosen\",\r\n   *  \"calculate_pcas\", \"pca_evaluation\", \"ai_evaluation\", \"true_approx_scores\",\r\n   *  \"predict_spectrum\"\r\n   */\r\n  requestData = (requestType) => {\r\n    const { project } = this.state;\r\n\r\n    let areas = this.state.xAxisData.length\r\n      ? this.props.spectraViewer.areas.map((area) => [\r\n          area.coordRange[0],\r\n          area.coordRange[1],\r\n        ])\r\n      : [];\r\n\r\n    // Add substances and concetrations of spectra files\r\n    let files = project.files;\r\n    files = files.map((file) => {\r\n      // Add checked status an graph color to file data\r\n      const useAll =\r\n        this.props.spectraViewer.rawSpectra.filter((el) => el.checked)\r\n          .length === 0;\r\n      for (let i = 0; i < this.props.spectraViewer.rawSpectra.length; i++) {\r\n        if (\r\n          this.props.spectraViewer.rawSpectra[i].id &&\r\n          this.props.spectraViewer.rawSpectra[i].id === file.id\r\n        ) {\r\n          file.color = this.props.spectraViewer.rawSpectra[i].color;\r\n          // Should no spectra be selected, all are used.\r\n          file.checked = useAll\r\n            ? true\r\n            : this.props.spectraViewer.rawSpectra[i].checked;\r\n        }\r\n      }\r\n      // Look for values in state and add theem to file properties\r\n      for (let i = 0; i < this.state.fileParams.length; i++) {\r\n        if (\r\n          this.state.fileParams[i].id &&\r\n          this.state.fileParams[i].id === file.id\r\n        ) {\r\n          file.id = this.state.fileParams[i].id;\r\n          file.substances = this.state.fileParams[i].subName.map(\r\n            (name, idx) => {\r\n              return {\r\n                name: name,\r\n                concentration: this.state.fileParams[i].concentration[idx],\r\n              };\r\n            }\r\n          );\r\n          // Successful reading of files\r\n          return file;\r\n        }\r\n      }\r\n\r\n      return file;\r\n    });\r\n    let input = {\r\n      id: project.id,\r\n      projectType: project.type,\r\n      files: files,\r\n      requestType: requestType, // Definitions: see method description\r\n      areaSet: areas,\r\n      operations: this.props.spectraViewer.operationSets,\r\n      useSavedCalcs: this.props.spectraViewer.useSavedCalcs,\r\n      selectedPcaId: this.props.spectraViewer.selectedPcaId,\r\n      selectedModel:\r\n        this.props.spectraViewer.models[\r\n          this.props.spectraViewer.selectedModelIdx\r\n        ],\r\n      selectedSpectrumId:\r\n        this.props.spectraViewer.rawSpectra[\r\n          this.props.spectraViewer.selectedSpectrum\r\n        ]?.id,\r\n      passingCriteria: {\r\n        criterium:\r\n          this.props.spectraViewer.passingCriteria[\r\n            this.props.spectraViewer.passingCriteria_idx\r\n          ],\r\n        limits: [\r\n          this.props.spectraViewer.passingCriteria_min,\r\n          this.props.spectraViewer.passingCriteria_max,\r\n        ],\r\n      },\r\n      spectraPredictionSettings:\r\n        this.props.spectraViewer.spectraPredictionSettings,\r\n      setXRangeManually: this.props.spectraViewer.setXRangeManually,\r\n      xValueMinMax: this.props.spectraViewer.xValueMinMax,\r\n    };\r\n    // pca chosen simply returns to home screen\r\n    if (input.requestType !== \"pca_chosen\") {\r\n      this.props.spinloader.show();\r\n    }\r\n\r\n    Backend.requestSpectraData(\r\n      input,\r\n      (data) => {\r\n        switch (input.requestType) {\r\n          case \"pca_chosen\":\r\n            // Only clean up pcas in backend, we're done in the frontend\r\n            break;\r\n\r\n          case \"calculate_pcas\":\r\n            // Only extract the calculated pcas\r\n            this.props.spectraViewer.setState({ pcas: data.pcas });\r\n            this.props.spinloader.hide();\r\n            break;\r\n\r\n          case \"pca_evaluation\":\r\n            // Analyse all selected spectra using the selected pca\r\n            this.props.spectraViewer.setState({\r\n              ratedSpectra: data.rated_spectra,\r\n              passingCriteria: this.gatherAllCriteria(data.rated_spectra),\r\n            });\r\n            this.props.spinloader.hide();\r\n            break;\r\n\r\n          case \"ai_evaluation\":\r\n            // Analyse all selected spectra using the selected ai model\r\n            this.props.spectraViewer.setState({\r\n              ratedSpectra: data.rated_spectra,\r\n              passingCriteria: this.gatherAllCriteria(data.rated_spectra),\r\n            });\r\n            this.props.spinloader.hide();\r\n            break;\r\n\r\n          case \"true_approx_scores\":\r\n            // Calculate pca approximation of a given spectrum for comparison purposes\r\n            this.props.spectraViewer.setState(\r\n              {\r\n                focusedPca: {\r\n                  info: data.focusedPca.info,\r\n                  approximations: data.focusedPca.approximations,\r\n                  scores: data.focusedPca.scores,\r\n                },\r\n              },\r\n\r\n              () =>\r\n                this.props.spectraViewer.setState(\r\n                  {\r\n                    currentlyShownData: null,\r\n                    analysisResults: this.structurePcaAnalysisResults(),\r\n                    analysisResultsLoaded: true,\r\n                  },\r\n\r\n                  () => this.showAnalysisResults()\r\n                )\r\n            );\r\n            break;\r\n\r\n          case \"predict_spectrum\":\r\n            // Predict a new spectrum from concentration input values.\r\n            this.showPredictionResults(data.predictedSpectra);\r\n            this.props.spinloader.hide();\r\n            break;\r\n\r\n          case \"init\":\r\n            // Get exisiting models\r\n            Backend.getModelMetadata(\"verified_models\", false, (model_data) => {\r\n              model_data = model_data.filter((model) => {\r\n                // Filter models to where any version is a spectra-analysis or a spectra-predict model\r\n                if (\r\n                  !model.versions.some(\r\n                    (version) =>\r\n                      version.modeltype === \"spectra-analysis\" ||\r\n                      version.modeltype === \"spectra-predict\"\r\n                  )\r\n                ) {\r\n                  return false;\r\n                }\r\n\r\n                // Remove any faulty versions\r\n                model.versions = model.versions.filter(\r\n                  (version) =>\r\n                    version.modeltype === \"spectra-analysis\" ||\r\n                    version.modeltype === \"spectra-predict\"\r\n                );\r\n\r\n                // Select the first version as default\r\n                model.selectedVersionIdx = 0;\r\n\r\n                // Keep only models where versions are still present\r\n                return model.versions.length > 0;\r\n              });\r\n\r\n              this.props.spectraViewer.setState({ models: model_data });\r\n            });\r\n\r\n            this.props.spectraViewer.setState(\r\n              {\r\n                pcas: data.pcas,\r\n                rawSpectra: data.series,\r\n                rawSpectraLoaded: true,\r\n                currentlyShownData: null,\r\n              },\r\n              () => {\r\n                this.showRawSpectra();\r\n              }\r\n            );\r\n            break;\r\n\r\n          case \"update\":\r\n          default:\r\n            this.setSeries(data.series, () => {\r\n              this.props.spinloader.hide();\r\n            });\r\n        }\r\n        return true;\r\n      },\r\n      (error) => {\r\n        // Concatenate array of errors to single string\r\n        window.openErrorDialog(\r\n          error.reduce((currentValue, newValue) => {\r\n            return `${currentValue}${newValue}\\n`;\r\n          }, \"\")\r\n        );\r\n        this.props.spinloader.hide();\r\n        return false;\r\n      },\r\n      (backendStatus) => {\r\n        if (this._isMounted) {\r\n          this.props.spinloader.showWithProgress(backendStatus);\r\n        }\r\n      }\r\n    );\r\n  };\r\n\r\n  structurePcaAnalysisResults = () => {\r\n    // Build a series of objects, that may be used to accurately display individual components of the analysis.\r\n    let series = [];\r\n    let total =\r\n      this.props.spectraViewer.focusedPca.scores.length +\r\n      this.props.spectraViewer.focusedPca.approximations.length;\r\n    let current = 1;\r\n    // all the pca scores\r\n    this.props.spectraViewer.focusedPca.scores.forEach((score) => {\r\n      this.props.spinloader.showWithProgress({\r\n        message: \"Calculating series\",\r\n        progress: (current++ / total) * 100,\r\n      });\r\n      series.push({\r\n        name: score.name,\r\n        checked: score.checked ? score.checked : false,\r\n        type: score.type ? score.type : \"line\",\r\n        symbol: score.symbol ?? \"none\",\r\n        data: score.data,\r\n        character: \"score\",\r\n      });\r\n    });\r\n\r\n    // all the pca original data, processed data, approximations, and residuals\r\n    this.props.spectraViewer.focusedPca.approximations.forEach(\r\n      (approximation) => {\r\n        this.props.spinloader.showWithProgress({\r\n          message: \"Calculating series\",\r\n          progress: (current++ / total) * 100,\r\n        });\r\n        // Match with original data\r\n        this.props.spectraViewer.rawSpectra.some((rawSpectrum) => {\r\n          if (rawSpectrum.id === approximation.id) {\r\n            series.push({\r\n              name: `Original`,\r\n              checked: approximation.checked ? approximation.checked : false,\r\n              type: approximation.type ? approximation.type : \"line\",\r\n              symbol: approximation.symbol ?? \"none\",\r\n              data: rawSpectrum.data,\r\n              character: \"original spectrum\",\r\n            });\r\n            return true;\r\n          }\r\n          return false;\r\n        });\r\n\r\n        // Preprocessed data\r\n        series.push({\r\n          name: `Preprocessed`,\r\n          checked: approximation.checked ? approximation.checked : false,\r\n          type: approximation.type ? approximation.type : \"line\",\r\n          symbol: approximation.symbol ?? \"none\",\r\n          data: approximation.original_data,\r\n          character: \"preprocessed spectrum\",\r\n        });\r\n\r\n        // Approximated Data\r\n        series.push({\r\n          name: `Approximated`,\r\n          checked: approximation.checked ? approximation.checked : false,\r\n          type: approximation.type ? approximation.type : \"line\",\r\n          symbol: approximation.symbol ?? \"none\",\r\n          data: approximation.approximated_data,\r\n          character: \"approximated spectrum\",\r\n        });\r\n\r\n        // Residual data\r\n        series.push({\r\n          name: `Residual`,\r\n          checked: approximation.checked ? approximation.checked : false,\r\n          type: approximation.type ? approximation.type : \"line\",\r\n          symbol: approximation.symbol ?? \"none\",\r\n          data: approximation.original_data.map((orig_data, idx) => {\r\n            let datapoint = [\r\n              orig_data[0],\r\n              approximation.approximated_data[idx][1] - orig_data[1],\r\n            ];\r\n            return datapoint;\r\n          }),\r\n          character: \"residual spectrum\",\r\n        });\r\n      }\r\n    );\r\n    return series;\r\n  };\r\n\r\n  /**\r\n   * Displays the raw spectra as loaded from backend in graph.\r\n   * @returns {bool} Successful display of raw spectra.\r\n   */\r\n  showRawSpectra = () => {\r\n    if (\r\n      this.props.spectraViewer.rawSpectraLoaded &&\r\n      this.props.spectraViewer.currentlyShownData !== \"raw_spectra\"\r\n    ) {\r\n      this.props.spinloader.showWithMessage(\"Loading datapoints...\");\r\n      setTimeout(() => {\r\n        this.state.chart.clear();\r\n        this.props.spectraViewer.setState({\r\n          currentlyShownData: \"raw_spectra\",\r\n        });\r\n        this.setState({\r\n          mainChartDataShown: \"raw_spectra\",\r\n        });\r\n        this.setSeries(this.props.spectraViewer.rawSpectra, () => {\r\n          this.props.spinloader.hide();\r\n        });\r\n      }, 0);\r\n\r\n      return true;\r\n    } else if (this.props.spectraViewer.currentlyShownData === \"raw_spectra\") {\r\n      return true;\r\n    } else {\r\n      return false;\r\n    }\r\n  };\r\n\r\n  /**\r\n   * Displays the analysis results as calculated in backend in graph.\r\n   * @returns {bool} Successful display of analysis results.\r\n   */\r\n  showAnalysisResults = () => {\r\n    if (\r\n      this.props.spectraViewer.analysisResultsLoaded &&\r\n      this.props.spectraViewer.currentlyShownData !== \"analysis_results\"\r\n    ) {\r\n      this.props.spinloader.showWithMessage(\"Loading datapoints...\");\r\n      setTimeout(() => {\r\n        this.state.chart.clear();\r\n        this.props.spectraViewer.setState({\r\n          currentlyShownData: \"analysis_results\",\r\n        });\r\n        this.setState({\r\n          mainChartDataShown: \"analysis_results\",\r\n        });\r\n        this.setSeries(this.props.spectraViewer.analysisResults, () => {\r\n          this.props.spinloader.hide();\r\n        });\r\n      }, 0);\r\n      return true;\r\n    } else if (\r\n      this.props.spectraViewer.currentlyShownData === \"analysis_results\"\r\n    ) {\r\n      return true;\r\n    } else {\r\n      return false;\r\n    }\r\n  };\r\n\r\n  /**\r\n   * Integrate predicted spectra alongside rawSpectra.\r\n   * @param {Array} spectra All predicted spectra to be shown alongside the normal, rawSpectra\r\n   */\r\n  showPredictionResults = (spectra) => {\r\n    // Show spectra alongside normal spectra\r\n    let tmpSpectra = this.props.spectraViewer.rawSpectra;\r\n    // Filter out double names\r\n    let existingNames = [];\r\n    spectra.forEach((spectrum) => existingNames.push(spectrum.name));\r\n    tmpSpectra = tmpSpectra.filter(\r\n      (spectrum) => !existingNames.some((name) => name === spectrum.name)\r\n    );\r\n\r\n    tmpSpectra.push(...spectra);\r\n    this.props.spectraViewer.setState(\r\n      {\r\n        rawSpectraLoaded: true,\r\n        currentlyShownData: null,\r\n        rawSpectra: tmpSpectra,\r\n      },\r\n      () => this.showRawSpectra()\r\n    );\r\n  };\r\n\r\n  /**\r\n   * Sets the top-level Apache ELineChart\r\n   * @param {ELineChart} chart\r\n   * @returns nothing when no chart is given.\r\n   */\r\n  setChart = (chart) => {\r\n    this.setState({ chart });\r\n    if (chart === null) {\r\n      return;\r\n    }\r\n    // update areas while drawing for settings content in side bar\r\n    chart.on(\"brush\", (params) => {\r\n      this.props.spectraViewer.updateAreas(params.areas);\r\n    });\r\n\r\n    // Toggling a single spectrum\r\n    // update checked spectras for spectra tab content in side bar\r\n    chart.on(\"legendselectchanged\", (params) => {\r\n      this.validateDatasets(params);\r\n    });\r\n\r\n    // Selecting all spectra\r\n    // Update checked spectras for spectra tab content in side bar\r\n    chart.on(\"legendselectall\", (params) => {\r\n      this.validateDatasets(params);\r\n    });\r\n\r\n    // Inversing all spectra\r\n    // Update checked spectras for spectra tab content in side bar\r\n    chart.on(\"legendinverseselect\", (params) => {\r\n      this.validateDatasets(params);\r\n    });\r\n\r\n    //reset to show all spectra\r\n    chart.on(\"restore\", () => {\r\n      this.setState({\r\n        datasets: this.state.datasets.map((item) => {\r\n          item.checked = true;\r\n          return item;\r\n        }),\r\n      });\r\n    });\r\n  };\r\n\r\n  validateDatasets = (params) => {\r\n    let datasets = JSON.parse(JSON.stringify(this.state.datasets));\r\n    let rawSpectra = this.props.spectraViewer.rawSpectra;\r\n    let analysisResults = this.props.spectraViewer.analysisResults;\r\n\r\n    for (let i = 0; i < datasets.length; i++) {\r\n      let key = datasets[i].name;\r\n      let checked = params.selected[key];\r\n      // undefined inputs are defaulted to true by the echart.\r\n      // only once specifically set, they have a boolean value.\r\n      if (typeof checked !== \"undefined\") {\r\n        datasets[i].checked = checked;\r\n      } else {\r\n        checked = true; // checked is used further down\r\n        datasets[i].checked = checked;\r\n      }\r\n\r\n      if (this.props.spectraViewer.currentlyShownData === \"raw_spectra\") {\r\n        // Update raw spectra\r\n        rawSpectra.filter((spectrum) => spectrum.name === key)[0].checked =\r\n          checked;\r\n      } else if (\r\n        this.props.spectraViewer.currentlyShownData === \"analysis_results\"\r\n      ) {\r\n        // Update analysis results\r\n        analysisResults.filter((spectrum) => spectrum.name === key)[0].checked =\r\n          checked;\r\n      }\r\n    }\r\n    this.setState({ datasets });\r\n    this.props.spectraViewer.setState({ rawSpectra, analysisResults });\r\n    this.forceUpdate();\r\n  };\r\n\r\n  /**\r\n   * Sets options for graph, including series as data\r\n   * @param {array} series Datavalues for series\r\n   * @param {function} callback Checks on success of this function. Is fed true or false.\r\n   */\r\n  setSeries = async (series, callback) => {\r\n    // Graph settings\r\n    let option = {\r\n      animation: false,\r\n      tooltip: {\r\n        trigger: \"axis\",\r\n        axisPointer: {\r\n          type: \"cross\",\r\n        },\r\n      },\r\n      legend: {\r\n        show: false,\r\n        data: series.map((item) => item.name),\r\n      },\r\n      grid: {\r\n        left: 20,\r\n        right: 20,\r\n        top: 60,\r\n        containLabel: true,\r\n        tooltip: {\r\n          show: true,\r\n        },\r\n      },\r\n      toolbox: {\r\n        dataZoom: {\r\n          show: true,\r\n        },\r\n        feature: {\r\n          dataZoom: {\r\n            yAxisIndex: \"none\",\r\n          },\r\n          brush: {\r\n            type: [\"lineX\", \"keep\", \"clear\"],\r\n          },\r\n          restore: {},\r\n          saveAsImage: {},\r\n        },\r\n        //orient: \"vertical\",\r\n        itemSize: 26,\r\n        iconStyle: {\r\n          borderWidth: 3,\r\n          borderColor: \"rgba(0, 0, 0, 0.54)\",\r\n        },\r\n        right: 20,\r\n      },\r\n      brush: {\r\n        xAxisIndex: \"all\",\r\n        brushLink: \"all\",\r\n        outOfBrush: {\r\n          colorAlpha: 0.1,\r\n        },\r\n      },\r\n      xAxis: {\r\n        type: \"value\",\r\n        scale: true,\r\n        // minInterval: 0.01,\r\n        axisLabel: {\r\n          show: true,\r\n          interval: 1,\r\n        },\r\n      },\r\n      yAxis: {\r\n        type: \"value\",\r\n        // minInterval: 0.01,\r\n      },\r\n      dataZoom: [\r\n        {\r\n          type: \"inside\",\r\n          disabled: false,\r\n        },\r\n        {},\r\n      ],\r\n      series: series,\r\n    };\r\n    this.state.chart.setOption(option);\r\n\r\n    // Update graph contents\r\n    let success = await this.updateChartData(series);\r\n    callback(success);\r\n  };\r\n\r\n  /**\r\n   * Updates graph contents.\r\n   * @param {Array} series Datavalues for graphs.\r\n   * @returns {bool} Success status of data update.\r\n   */\r\n  updateChartData = async (series) => {\r\n    let minX = 10000000;\r\n    let maxX = -10000000;\r\n    let length = 0;\r\n    series.forEach((item) => {\r\n      minX = Math.min(minX, item.data[0][0]);\r\n      maxX = Math.max(maxX, item.data[item.data.length - 1][0]);\r\n      length = Math.max(length, item.data.length);\r\n    });\r\n\r\n    const xAxisData = {\r\n      minX: minX,\r\n      maxX: maxX,\r\n      stepX: 0.1,\r\n      length: length,\r\n    };\r\n\r\n    this.setState({ datasets: series, xAxisData });\r\n    if (series.length > 0) {\r\n      series.forEach((dataset) => {\r\n        if (!dataset.checked) {\r\n          this.state.chart.dispatchAction({\r\n            type: \"legendUnSelect\",\r\n            name: dataset.name,\r\n          });\r\n        }\r\n      });\r\n    }\r\n\r\n    if (this.props.spectraViewer.areas.length > 0) {\r\n      this.state.chart.dispatchAction({\r\n        type: \"brush\",\r\n        areas: this.props.spectraViewer.areas,\r\n      });\r\n    }\r\n    this.props.spectraViewer.setMaxScores();\r\n    return true;\r\n  };\r\n\r\n  /**\r\n   * Toggles a selected dataseries on or off,\r\n   * influencing the maximum amount of settable scores,\r\n   * and limiting those to be included in analysis/PCA training.\r\n   * @param {string} name Name of the datasereies to toggle\r\n   */\r\n  toggleLegend = (name) => {\r\n    this.state.chart.dispatchAction({\r\n      type: \"legendToggleSelect\",\r\n      name: name,\r\n    });\r\n    this.props.spectraViewer.setMaxScores();\r\n  };\r\n\r\n  /**\r\n   * Toggles all dataseries on or off,\r\n   * including them all in the analysis/PCA training.\r\n   * @param {string} name Name of the dataseries to toggle\r\n   */\r\n  toggleAll = () => {\r\n    let spectra = this.state.datasets;\r\n    this.state.chart.dispatchAction({\r\n      type: \"legendAllSelect\",\r\n    });\r\n\r\n    // Deactivate all spectra should all be activated\r\n    if (spectra.every((spectrum) => spectrum.checked)) {\r\n      this.state.chart.dispatchAction({\r\n        type: \"legendInverseSelect\",\r\n      });\r\n    }\r\n    this.props.spectraViewer.setMaxScores();\r\n  };\r\n\r\n  setSelectedRow = (row) => {\r\n    this.setState({ selectedRow: row });\r\n  };\r\n\r\n  onUpdateResultChartTypes = (resultChartTypes) => {\r\n    this.setState({ resultChartTypes });\r\n  };\r\n\r\n  onUpdateFileParams = (fileParams) => {\r\n    this.setState({ fileParams });\r\n  };\r\n\r\n  createProjectModel = (project, user) => {\r\n    const projectModel = {\r\n      name: project.name,\r\n      user: user,\r\n      id: project.id,\r\n      readableId: project.readableId,\r\n      metaData: project.metaData,\r\n      type: project.type,\r\n      tools: project.viewerConfig.project.tools,\r\n      job: project.viewerConfig.project.job,\r\n      files: project.files,\r\n    };\r\n    return projectModel;\r\n  };\r\n\r\n  /**\r\n   * Prepares the data from state for saving.\r\n   * Saves project accordingly.\r\n   */\r\n  saveFunction = () => {\r\n    if (this.state) {\r\n      let project = this.state.project;\r\n      project.simpleParams = JSON.stringify({\r\n        xAxisData: this.state.xAxisData,\r\n        useSavedCalcs: this.props.spectraViewer.useSavedCalcs,\r\n        areas: this.props.spectraViewer.areas.map((area) => {\r\n          // Remove refs before saving\r\n          area.refs = [];\r\n          return area;\r\n        }),\r\n        datasets: this.state.datasets,\r\n        operationSets: this.props.spectraViewer.operationSets,\r\n        fileParams: this.state.fileParams,\r\n        passingCriteria: this.props.spectraViewer.passingCriteria,\r\n        passingCriteria_idx: this.props.spectraViewer.passingCriteria_idx,\r\n        passingCriteria_min: this.props.spectraViewer.passingCriteria_min,\r\n        passingCriteria_max: this.props.spectraViewer.passingCriteria_max,\r\n      });\r\n      Backend.saveProject(project, (data) => {\r\n        if (data.success) {\r\n          window.showSuccessSnackbar(\"Project saved succesfully!\");\r\n        } else {\r\n          window.showErrorSnackbar(\"Project could not be saved!\");\r\n        }\r\n      });\r\n    }\r\n  };\r\n\r\n  onChangeMetaData = (field, e) => {\r\n    this.setState((prevState) => {\r\n      let project = Object.assign({}, prevState.project);\r\n      project.metaData[field] = e;\r\n      return { project };\r\n    });\r\n  };\r\n\r\n  handleMainTabChange = (event, value) => {\r\n    this.setState({ activeMainTab: value });\r\n  };\r\n\r\n  toggleLeftTableContainer = () => {\r\n    this.setState({ showResultTable: !this.state.showResultTable });\r\n    setTimeout(() => this.updateDimensions(), 10);\r\n  };\r\n\r\n  render() {\r\n    const { classes } = this.props;\r\n    const {\r\n      initialized,\r\n      project,\r\n      activeMainTab,\r\n      showResultTable,\r\n      leftTableWidth,\r\n      sideBarWidth,\r\n    } = this.state;\r\n\r\n    return (\r\n      <div\r\n        className={classes.outerContainer}\r\n        style={{\r\n          gridTemplateColumns: \"1fr 5px 45px \" + sideBarWidth + \"px\",\r\n        }}\r\n      >\r\n        <div className={classes.TableContainer}>\r\n          {project && (\r\n            <React.Fragment>\r\n              {initialized || this.state.project.type === \"ESREvaluation\" ? (\r\n                <React.Fragment>\r\n                  <Tabs\r\n                    //className={`${classes.tabsContainer} ${classes.flexRowContentHeight}`}\r\n                    value={activeMainTab}\r\n                    onChange={this.handleMainTabChange}\r\n                    variant=\"fullWidth\"\r\n                    indicatorColor=\"primary\"\r\n                    textColor=\"primary\"\r\n                  >\r\n                    <Tab className={classes.tab} label=\"Spectra Chart\" />\r\n\r\n                    {this.state.project.type !== \"ESREvaluation\" && (\r\n                      <Tab className={classes.tab} label=\"Result Charts\" />\r\n                    )}\r\n                  </Tabs>\r\n\r\n                  <div\r\n                    style={{\r\n                      width: \"100%\",\r\n                      height: \"100%\",\r\n                      overflow: \"hidden\",\r\n                      display: activeMainTab === 0 ? \"grid\" : \"none\",\r\n                      gridTemplateColumns: \"auto 1fr\",\r\n                    }}\r\n                  >\r\n                    <div\r\n                      className={classes.leftTableContainer}\r\n                      style={{ width: showResultTable ? leftTableWidth : 0 }}\r\n                    >\r\n                      <SpectraLeftTableResults\r\n                        activeMainTab={activeMainTab}\r\n                        leftTableWidth={this.state.leftTableWidth}\r\n                        setParentState={(value) => this.setState(value)}\r\n                      />\r\n                      <div className={classes.borderBackground}>\r\n                        <LocalVerticalResizeBorder\r\n                          leftBorder={false}\r\n                          targetWidth={this.state.leftTableWidth}\r\n                          min={400}\r\n                          resizeWidth={(width) => {\r\n                            this.setState({\r\n                              leftTableWidth: width,\r\n                            });\r\n                            this.updateDimensions();\r\n                          }}\r\n                        />\r\n                      </div>\r\n                    </div>\r\n                    <ELineChart\r\n                      project={project}\r\n                      chart={this.state.chart}\r\n                      setChart={this.setChart}\r\n                      onSave={this.saveFunction}\r\n                      requestData={this.requestData}\r\n                      showRawSpectra={this.showRawSpectra}\r\n                      showAnalysisResults={this.showAnalysisResults}\r\n                      mainChartDataShown={this.state.mainChartDataShown}\r\n                    />\r\n                  </div>\r\n\r\n                  <div\r\n                    style={{\r\n                      width: \"100%\",\r\n                      height: \"100%\",\r\n                      overflow: \"hidden\",\r\n                      display:\r\n                        activeMainTab === 1 &&\r\n                        this.state.project.type !== \"ESREvaluation\"\r\n                          ? \"grid\"\r\n                          : \"none\",\r\n                      gridTemplateRows: \"1fr auto\",\r\n                    }}\r\n                  >\r\n                    <SpectraResultCharts\r\n                      windowSize={this.state.windowSize}\r\n                      resultChartTypes={this.state.resultChartTypes}\r\n                      datasets={this.state.datasets}\r\n                      onUpdateResultChartTypes={this.onUpdateResultChartTypes}\r\n                      setCurrentlyShownData={(value) =>\r\n                        this.props.spectraViewer.setState({\r\n                          currentlyShownData: value,\r\n                        })\r\n                      }\r\n                    />\r\n                    <div\r\n                      className={classes.bottomTableContainer}\r\n                      style={{\r\n                        height: showResultTable\r\n                          ? this.state.bottomTableHeight\r\n                          : 0,\r\n                      }}\r\n                    >\r\n                      <div className={classes.borderBackground}>\r\n                        <LocalHorizontalResizeBorder\r\n                          leftBorder={false}\r\n                          targetHeight={this.state.bottomTableHeight}\r\n                          min={200}\r\n                          resizeHeight={(height) => {\r\n                            this.setState({\r\n                              bottomTableHeight: height,\r\n                            });\r\n                            this.updateDimensions();\r\n                          }}\r\n                        />\r\n                      </div>\r\n                      <SpectraBottomTableResults\r\n                        tableHeight={this.state.bottomTableHeight}\r\n                        setParentState={(value) => this.setState(value)}\r\n                      />\r\n                    </div>\r\n                  </div>\r\n                </React.Fragment>\r\n              ) : (\r\n                <FileParamForm\r\n                  project={project}\r\n                  fileParams={this.state.fileParams}\r\n                  onUpdateFileParams={this.onUpdateFileParams}\r\n                  setInitialized={(value) =>\r\n                    this.setState({ initialized: value })\r\n                  }\r\n                  save={this.saveFunction}\r\n                />\r\n              )}\r\n            </React.Fragment>\r\n          )}\r\n        </div>\r\n        <div className={classes.borderBackground}>\r\n          <LocalVerticalResizeBorder\r\n            leftBorder={true}\r\n            targetWidth={this.state.sideBarWidth}\r\n            min={400}\r\n            resizeWidth={(width) => {\r\n              this.setState({\r\n                sideBarWidth: width,\r\n              });\r\n              this.updateDimensions();\r\n            }}\r\n          />\r\n        </div>\r\n        <div style={{ position: \"relative\" }}>\r\n          <SpectraToolBar\r\n            onSave={() => this.saveFunction()}\r\n            showResultTable={this.state.showResultTable}\r\n            toggleLeftTableContainer={() => this.toggleLeftTableContainer()}\r\n          />\r\n        </div>\r\n        <div className={classes.SideBarContainer}>\r\n          {project && (\r\n            <SpectraSideBar\r\n              project={project}\r\n              xAxisData={this.state.xAxisData}\r\n              chart={this.state.chart}\r\n              datasets={this.state.datasets}\r\n              initialized={\r\n                this.state.project.type === \"ESREvaluation\" ||\r\n                this.state.initialized\r\n              }\r\n              setInitialized={(value) => this.setState({ initialized: value })}\r\n              maxScores={this.state.maxScores}\r\n              toggleLegend={this.toggleLegend}\r\n              toggleAll={this.toggleAll}\r\n              onChangeMetaData={this.onChangeMetaData}\r\n              requestData={this.requestData}\r\n              onSave={() => this.saveFunction()}\r\n              showRawSpectra={this.showRawSpectra}\r\n              showAnalysisResults={this.showAnalysisResults}\r\n              throwError={(error) => window.showErrorSnackbar(error)}\r\n              updateChartData={this.setSeries}\r\n            />\r\n          )}\r\n        </div>\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nSpectraViewer.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  spectraViewer: PropTypes.object.isRequired,\r\n  id: PropTypes.string,\r\n  spinloader: PropTypes.object,\r\n};\r\n\r\nexport default withRouter(\r\n  withSpinloader(withSpectraViewer(withStyles(styles)(SpectraViewer)))\r\n);\r\n","import * as React from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n\r\nimport Stack from \"@mui/material/Stack\";\r\nimport TextField from \"@mui/material/TextField\";\r\nimport { AdapterDateFns } from \"@mui/x-date-pickers/AdapterDateFns\";\r\nimport { LocalizationProvider } from \"@mui/x-date-pickers/LocalizationProvider\";\r\nimport { DesktopDatePicker } from \"@mui/x-date-pickers/DesktopDatePicker\";\r\n\r\nconst styles = () => ({\r\n  root: {\r\n    width: 150,\r\n    margin: \"0 5px\",\r\n    display: \"inline-block\",\r\n  },\r\n});\r\n\r\nfunction DayPicker(props) {\r\n  const { classes } = props;\r\n  const handleChange = (newValue) => {\r\n    props.updateTable(newValue);\r\n  };\r\n\r\n  return (\r\n    <LocalizationProvider dateAdapter={AdapterDateFns}>\r\n      <Stack spacing={3} className={classes.root}>\r\n        <DesktopDatePicker\r\n          label=\"Date\"\r\n          inputFormat=\"MM/dd/yyyy\"\r\n          value={props.date}\r\n          maxDate={new Date()}\r\n          minDate={props.firstDate}\r\n          onChange={handleChange}\r\n          renderInput={(params) => {\r\n            return <TextField name=\"Textfield\" {...params} />;\r\n          }}\r\n        />\r\n      </Stack>\r\n    </LocalizationProvider>\r\n  );\r\n}\r\n\r\nDayPicker.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  date: PropTypes.object.isRequired,\r\n  firstDate: PropTypes.object.isRequired,\r\n  updateTable: PropTypes.func.isRequired,\r\n};\r\n\r\nexport default withStyles(styles)(DayPicker);\r\n","import React from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport withStyles from \"@mui/styles/withStyles\";\r\nimport { IconButton } from \"@mui/material\";\r\nimport { NavigateBefore, NavigateNext } from \"@mui/icons-material\";\r\nimport DayPicker from \"./DayPicker\";\r\n\r\nconst styles = () => ({\r\n  root: {\r\n    userSelect: \"none\",\r\n    display: \"inline-block\",\r\n  },\r\n  navButton: {\r\n    position: \"relative\",\r\n    top: 12,\r\n  },\r\n});\r\n\r\nconst isSameDay = (someDate, compareDate) => {\r\n  return (\r\n    someDate.getDate() == compareDate.getDate() &&\r\n    someDate.getMonth() == compareDate.getMonth() &&\r\n    someDate.getFullYear() == compareDate.getFullYear()\r\n  );\r\n};\r\n\r\nfunction DayPagination(props) {\r\n  const handleBefore = () => {\r\n    let date = new Date(props.date.getTime());\r\n    date.setDate(date.getDate() - 1);\r\n    props.updateTable(date);\r\n  };\r\n\r\n  const handleNext = () => {\r\n    let date = new Date(props.date.getTime());\r\n    date.setDate(date.getDate() + 1);\r\n    props.updateTable(date);\r\n  };\r\n  const { classes } = props;\r\n  return (\r\n    <div className={classes.root}>\r\n      <IconButton\r\n        className={classes.navButton}\r\n        onClick={handleBefore}\r\n        disabled={isSameDay(props.date, props.firstDate)}\r\n      >\r\n        <NavigateBefore />\r\n      </IconButton>\r\n      <DayPicker\r\n        date={props.date}\r\n        firstDate={props.firstDate}\r\n        updateTable={props.updateTable}\r\n      />\r\n      <IconButton\r\n        className={classes.navButton}\r\n        onClick={handleNext}\r\n        disabled={isSameDay(props.date, new Date())}\r\n      >\r\n        <NavigateNext />\r\n      </IconButton>\r\n    </div>\r\n  );\r\n}\r\n\r\nDayPagination.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  date: PropTypes.object.isRequired,\r\n  firstDate: PropTypes.object.isRequired,\r\n  updateTable: PropTypes.func.isRequired,\r\n};\r\n\r\nexport default withStyles(styles)(DayPagination);\r\n","import React from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n\r\nimport clsx from \"clsx\";\r\nimport { styled } from \"@mui/material/styles\";\r\nimport { TableCell, Button } from \"@mui/material\";\r\nimport { AutoSizer, Column, Table } from \"react-virtualized\";\r\nimport { convertDate } from \"../../common/utils/Localization\";\r\nimport DayPagination from \"./DayPagination\";\r\nimport Backend from \"../../common/utils/Backend\";\r\n\r\nconst classes = {\r\n  flexContainer: \"ReactVirtualizedDemo-flexContainer\",\r\n  tableRow: \"ReactVirtualizedDemo-tableRow\",\r\n  tableRowHover: \"ReactVirtualizedDemo-tableRowHover\",\r\n  tableCell: \"ReactVirtualizedDemo-tableCell\",\r\n  noClick: \"ReactVirtualizedDemo-noClick\",\r\n};\r\n\r\nconst styles = () => ({\r\n  root: {\r\n    margin: 10,\r\n    height: \"100%\",\r\n    display: \"grid\",\r\n    gridTemplateRows: \"auto 1fr\",\r\n  },\r\n  inlineBtn: {\r\n    position: \"relative\",\r\n    top: \"12px\",\r\n  },\r\n\r\n  // temporary right-to-left patch, waiting for\r\n  // https://github.com/bvaughn/react-virtualized/issues/454\r\n  \"& .ReactVirtualized__Table__headerRow\": {\r\n    paddingRight: undefined,\r\n  },\r\n  [`& .${classes.flexContainer}`]: {\r\n    display: \"flex\",\r\n    alignItems: \"center\",\r\n    boxSizing: \"border-box\",\r\n  },\r\n  [`& .${classes.tableRow}`]: {\r\n    cursor: \"pointer\",\r\n  },\r\n  [`& .${classes.tableCell}`]: {\r\n    flex: 1,\r\n  },\r\n  [`& .${classes.noClick}`]: {\r\n    cursor: \"initial\",\r\n  },\r\n});\r\n\r\nclass MuiVirtualizedTable extends React.PureComponent {\r\n  static defaultProps = {\r\n    headerHeight: 48,\r\n    rowHeight: 48,\r\n  };\r\n\r\n  getRowClassName = ({ index }) => {\r\n    const { onRowClick } = this.props;\r\n\r\n    return clsx(classes.tableRow, classes.flexContainer, {\r\n      [classes.tableRowHover]: index !== -1 && onRowClick != null,\r\n    });\r\n  };\r\n\r\n  cellRenderer = ({ cellData, columnIndex }) => {\r\n    const { columns, rowHeight, onRowClick } = this.props;\r\n    return (\r\n      <TableCell\r\n        component=\"div\"\r\n        className={clsx(classes.tableCell, classes.flexContainer, {\r\n          [classes.noClick]: onRowClick == null,\r\n        })}\r\n        variant=\"body\"\r\n        style={{ height: rowHeight }}\r\n        align={\r\n          (columnIndex != null && columns[columnIndex].numeric) || false\r\n            ? \"right\"\r\n            : \"left\"\r\n        }\r\n      >\r\n        {cellData}\r\n      </TableCell>\r\n    );\r\n  };\r\n\r\n  headerRenderer = ({ label, columnIndex }) => {\r\n    const { headerHeight, columns } = this.props;\r\n\r\n    return (\r\n      <TableCell\r\n        component=\"div\"\r\n        className={clsx(\r\n          classes.tableCell,\r\n          classes.flexContainer,\r\n          classes.noClick\r\n        )}\r\n        variant=\"head\"\r\n        style={{ height: headerHeight }}\r\n        align={columns[columnIndex].numeric || false ? \"right\" : \"left\"}\r\n      >\r\n        <span>{label}</span>\r\n      </TableCell>\r\n    );\r\n  };\r\n\r\n  render() {\r\n    const { columns, rowHeight, headerHeight, ...tableProps } = this.props;\r\n    return (\r\n      <AutoSizer>\r\n        {({ height, width }) => (\r\n          <Table\r\n            height={height}\r\n            width={width}\r\n            rowHeight={rowHeight}\r\n            gridStyle={{\r\n              direction: \"inherit\",\r\n            }}\r\n            headerHeight={headerHeight}\r\n            {...tableProps}\r\n            rowClassName={this.getRowClassName}\r\n          >\r\n            {columns.map(({ dataKey, ...other }, index) => {\r\n              return (\r\n                <Column\r\n                  key={dataKey}\r\n                  headerRenderer={(headerProps) =>\r\n                    this.headerRenderer({\r\n                      ...headerProps,\r\n                      columnIndex: index,\r\n                    })\r\n                  }\r\n                  className={classes.flexContainer}\r\n                  cellRenderer={this.cellRenderer}\r\n                  dataKey={dataKey}\r\n                  {...other}\r\n                />\r\n              );\r\n            })}\r\n          </Table>\r\n        )}\r\n      </AutoSizer>\r\n    );\r\n  }\r\n}\r\n\r\nMuiVirtualizedTable.propTypes = {\r\n  columns: PropTypes.arrayOf(\r\n    PropTypes.shape({\r\n      dataKey: PropTypes.string.isRequired,\r\n      label: PropTypes.string.isRequired,\r\n      numeric: PropTypes.bool,\r\n      width: PropTypes.number.isRequired,\r\n    })\r\n  ).isRequired,\r\n  headerHeight: PropTypes.number,\r\n  onRowClick: PropTypes.func,\r\n  rowHeight: PropTypes.number,\r\n};\r\n\r\nconst VirtualizedTable = styled(MuiVirtualizedTable)(styles);\r\n\r\nconst columns = [\r\n  { dataKey: \"time\", label: \"Time\", width: 200 },\r\n  { dataKey: \"name\", label: \"Name\", width: 120 },\r\n  { dataKey: \"actionType\", label: \"Action Type\", width: 120 },\r\n  { dataKey: \"action\", label: \"Action\", width: 500 },\r\n];\r\n\r\nfunction UserHistoryTable(props) {\r\n  const { classes, userActions } = props;\r\n\r\n  let rows = [];\r\n  if (userActions) {\r\n    rows = userActions.map((userAction, idx) => {\r\n      userAction.id = idx;\r\n      userAction.time = convertDate(userAction.time).toLocaleString();\r\n      return userAction;\r\n    });\r\n  }\r\n\r\n  const onDownload = (date) => {\r\n    Backend.downloadUserActions(date);\r\n  };\r\n\r\n  return (\r\n    <div className={classes.root}>\r\n      <div>\r\n        <DayPagination\r\n          date={props.date}\r\n          updateTable={props.updateTable}\r\n          firstDate={props.firstDate}\r\n        />\r\n        <Button\r\n          className={classes.inlineBtn}\r\n          onClick={() => onDownload(props.date)}\r\n        >\r\n          Download as CSV File\r\n        </Button>\r\n      </div>\r\n      <div>\r\n        <VirtualizedTable\r\n          rowCount={rows.length}\r\n          rowGetter={({ index }) => rows[index]}\r\n          columns={columns}\r\n        />\r\n      </div>\r\n    </div>\r\n  );\r\n}\r\n\r\nUserHistoryTable.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  date: PropTypes.object.isRequired,\r\n  firstDate: PropTypes.object.isRequired,\r\n  userActions: PropTypes.array.isRequired,\r\n  updateTable: PropTypes.func.isRequired,\r\n};\r\n\r\nexport default withStyles(styles)(UserHistoryTable);\r\n","import React, { useState, useEffect } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport { withRouter } from \"react-router-dom\";\r\n\r\nimport withStyles from \"@mui/styles/withStyles\";\r\nimport Backend from \"../common/utils/Backend\";\r\nimport { Paper } from \"@mui/material\";\r\n\r\nimport UserHistoryTable from \"./components/UserHistoryTable\";\r\nimport { convertDate } from \"../common/utils/Localization\";\r\n\r\nconst styles = () => ({\r\n  root: {\r\n    padding: 10,\r\n    height: \"100%\",\r\n  },\r\n  paper: {\r\n    height: \"100%\",\r\n    width: 1000,\r\n    padding: \"10px 10px 25px\",\r\n    margin: \"0 auto\",\r\n  },\r\n});\r\n\r\nfunction UserHistoryPage(props) {\r\n  const [userActions, setUserActions] = useState([]);\r\n  const [date, setDate] = useState(new Date());\r\n  const [firstDate, setFirstDate] = useState(new Date());\r\n\r\n  const updateTable = (date) => {\r\n    Backend.getUserActions(date, (res) => {\r\n      if (res.status === 403) {\r\n        window.showErrorSnackbar(\"No permission to access user history\");\r\n      } else {\r\n        setFirstDate(convertDate(res.firstDate));\r\n        setDate(convertDate(res.date));\r\n        setUserActions(res.userActions);\r\n      }\r\n    });\r\n  };\r\n\r\n  useEffect(() => {\r\n    updateTable(new Date());\r\n  }, []);\r\n  const { classes } = props;\r\n  return (\r\n    <div className={classes.root}>\r\n      <Paper className={classes.paper}>\r\n        <UserHistoryTable\r\n          userActions={userActions}\r\n          date={date}\r\n          firstDate={firstDate}\r\n          updateTable={updateTable}\r\n        />\r\n      </Paper>\r\n    </div>\r\n  );\r\n}\r\n\r\nUserHistoryPage.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n};\r\n\r\nexport default withRouter(withStyles(styles)(UserHistoryPage));\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport withStyles from \"@mui/styles/withStyles\";\r\nimport { IconButton, Tooltip, Checkbox, FormControlLabel } from \"@mui/material\";\r\nimport Backend from \"../../common/utils/Backend\";\r\nimport SketchColorPicker from \"../../common/components/SketchColorPicker\";\r\n\r\nimport { FontAwesomeIcon } from \"@fortawesome/react-fontawesome\";\r\nimport {\r\n  faChartArea,\r\n  faUndo,\r\n  faArrowsAltH,\r\n  faChartLine,\r\n} from \"@fortawesome/free-solid-svg-icons\";\r\nimport { GetApp, Publish } from \"@mui/icons-material\";\r\n\r\nimport ToggleButton from \"@mui/material/ToggleButton\";\r\nimport ToggleButtonGroup from \"@mui/material/ToggleButtonGroup\";\r\nimport \"./../../css/histogram.css\";\r\n\r\nconst styles = {\r\n  root: {\r\n    overflow: \"visible\",\r\n  },\r\n  chartContainer: {\r\n    height: 120,\r\n    position: \"relative\",\r\n    marginBottom: 0,\r\n  },\r\n  rangeSlider: {\r\n    bottom: 12,\r\n  },\r\n  actionButton: {\r\n    display: \"inline-block\",\r\n    border: \"none\",\r\n    background: \"rgba(0, 0, 0, 0.2)\",\r\n    marginRight: \"2px\",\r\n    height: \"35px\",\r\n  },\r\n  toggleContainer: {\r\n    boxShadow: \"none\",\r\n    display: \"inline-block\",\r\n    verticalAlign: \"top\",\r\n  },\r\n  title: {\r\n    padding: 5,\r\n    fontSize: 14,\r\n  },\r\n  toolbar: {\r\n    width: \"100%\",\r\n  },\r\n  toolButton: {\r\n    fontSize: 18,\r\n  },\r\n  toolButtonRight: {\r\n    fontSize: 18,\r\n    float: \"right\",\r\n  },\r\n  grow: {\r\n    flexGrow: 1,\r\n  },\r\n  gradientBar: {\r\n    height: 5,\r\n    width: \"100%\",\r\n    background: \"linear-gradient(90deg, black, white)\",\r\n  },\r\n  dragIndicator: {\r\n    color: \"#757575\",\r\n    position: \"absolute\",\r\n    top: 5,\r\n    right: 5,\r\n    cursor: \"grab\",\r\n  },\r\n  grabbing: {\r\n    cursor: \"grabbing\",\r\n  },\r\n  color: {\r\n    borderRadius: \"2px\",\r\n  },\r\n  channelLabel: {\r\n    minWidth: \"42px\",\r\n    lineHeight: \"18px\",\r\n  },\r\n  popover: {\r\n    position: \"absolute\",\r\n    zIndex: \"2\",\r\n  },\r\n  cover: {\r\n    position: \"fixed\",\r\n    top: \"0px\",\r\n    right: \"0px\",\r\n    bottom: \"0px\",\r\n    left: \"0px\",\r\n  },\r\n  toggleBtnContent: {\r\n    position: \"relative\",\r\n  },\r\n};\r\n\r\n// Histogram Scale Enum\r\nconst HistogramScale = {\r\n  LINEAR: \"linear\",\r\n  LOGARITHMIC: \"logarithmic\",\r\n};\r\n\r\n/**\r\n * convert hex colors to rgb values with alpha\r\n * @param {String} hex Hax Color Code\r\n * @param {Number} alpha Alpha value\r\n */\r\nfunction hexToRGB(hex, alpha) {\r\n  var r = parseInt(hex.slice(1, 3), 16),\r\n    g = parseInt(hex.slice(3, 5), 16),\r\n    b = parseInt(hex.slice(5, 7), 16);\r\n\r\n  if (alpha) {\r\n    return \"rgba(\" + r + \", \" + g + \", \" + b + \", \" + alpha + \")\";\r\n  } else {\r\n    return \"rgb(\" + r + \", \" + g + \", \" + b + \")\";\r\n  }\r\n}\r\n\r\nfunction validateGamma(gamma) {\r\n  return gamma > 2 ? Math.pow(gamma, 1 / 4) : gamma;\r\n}\r\n\r\n/**\r\n * Configuration of a Fluorescence Channel\r\n */\r\nexport class ChannelsConfig {\r\n  constructor(omeChannels) {\r\n    let nChannels = omeChannels.length;\r\n    this.nChannels = nChannels;\r\n\r\n    this.channels = [];\r\n    for (let i = 0; i < nChannels; i++) {\r\n      let color = omeChannels[i].color;\r\n      if (color !== -1) {\r\n        if (!isNaN(color)) {\r\n          color = parseInt(color, 10);\r\n          // handle negative color integers\r\n          if (color < 0) color = 16777216 - color;\r\n          // conver decimal to hex\r\n          color = color.toString(16);\r\n          // add leading zeros\r\n          while (color.length < 6 || color.length % 2 !== 0) {\r\n            color = \"0\" + color;\r\n          }\r\n          // add leading #\r\n          color = \"#\" + color;\r\n        }\r\n      }\r\n      let channelName =\r\n        omeChannels[i].name === \"TL Brightfield\" ? \"RGB\" : omeChannels[i].name;\r\n\r\n      channelName =\r\n        channelName === \"\"\r\n          ? i === 0\r\n            ? \"R\"\r\n            : i === 1\r\n            ? \"G\"\r\n            : \"B\"\r\n          : channelName;\r\n      this.channels[i] = {\r\n        color: color,\r\n        enabled: true,\r\n        min: 250 * omeChannels[i].low,\r\n        max: 250 * Math.min(omeChannels[i].high, 1),\r\n        gamma: validateGamma(omeChannels[i].gamma),\r\n        name: omeChannels[i].name,\r\n        type: omeChannels[i].type,\r\n      };\r\n    }\r\n\r\n    // default scaling is linear\r\n    this.scale = HistogramScale.LOGARITHMIC;\r\n  }\r\n}\r\n\r\nclass Histogram extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n\r\n    let stateGamma = this.props.histogramConfig.channels[0].gamma;\r\n    if (stateGamma > 2) {\r\n      stateGamma = Math.pow(stateGamma, 1 / 4);\r\n    }\r\n    this._isMounted = false;\r\n    this.state = {\r\n      originalHistogramConfig: JSON.parse(\r\n        JSON.stringify(props.histogramConfig)\r\n      ),\r\n      selectedSingleChannel: -1,\r\n      selectedChannels: this.getEnabledChannels(),\r\n      histograms: [],\r\n      datasets: [],\r\n      displayColorPicker: false,\r\n      singleChannelMode: false,\r\n      channelSelectMode: this.props.channelSelectMode,\r\n      lastClickedChannel: -1,\r\n      sliderMode: false,\r\n      leftGammaValue: this.gammaFunction(0.25, stateGamma),\r\n      rightGammaValue: this.gammaFunction(0.75, stateGamma),\r\n      min:\r\n        props.histogramConfig.channels[0].min > 250\r\n          ? 0\r\n          : props.histogramConfig.channels[0].min,\r\n      max:\r\n        props.histogramConfig.channels[0].max > 255\r\n          ? 250\r\n          : props.histogramConfig.channels[0].max,\r\n      gamma: stateGamma,\r\n      isBrightfield: this.isBrightfield(),\r\n    };\r\n    // load small images from backend and calculate histogram\r\n    for (let c = 0; c < props.histogramConfig.nChannels; c++) {\r\n      let img = new Image();\r\n      img.src = Backend.renderRegion({\r\n        id: props.id,\r\n        page: c, // TODO calc page for complex images (timeframes and z stack)\r\n        lv: 0,\r\n        x: 0,\r\n        y: 0,\r\n        debug: false,\r\n      });\r\n      // wait until image is loaded succesfully\r\n      img.onload = () => {\r\n        // calcualte histogram\r\n        let histograms = this.state.histograms;\r\n        if (this.state.isBrightfield) {\r\n          histograms[0] = this.calcHist(img, 0);\r\n          histograms[1] = this.calcHist(img, 1);\r\n          histograms[2] = this.calcHist(img, 2);\r\n        } else {\r\n          histograms[c] = this.calcHist(img, 0);\r\n        }\r\n\r\n        this.setMountedState({ histograms: histograms });\r\n        if (this._isMounted) this.forceUpdate();\r\n      };\r\n    }\r\n  }\r\n\r\n  isBrightfield() {\r\n    let channels = this.props.histogramConfig.channels;\r\n    if (channels.length > 1) return false;\r\n    return (\r\n      channels[0].type === \"brightfield\" ||\r\n      channels[0].name === \"TL Brightfield\" ||\r\n      channels[0].name === \"RGB\"\r\n    );\r\n  }\r\n\r\n  setMountedState = (stateObject, callback) => {\r\n    if (this._isMounted) {\r\n      this.setState(stateObject, callback);\r\n    }\r\n  };\r\n\r\n  componentWillUnmount() {\r\n    this._isMounted = false;\r\n  }\r\n\r\n  componentDidMount() {\r\n    this._isMounted = true;\r\n    const histogramConfig = this.props.histogramConfig;\r\n    this.drawGammaLine();\r\n\r\n    // find all selected channels and put in channels array\r\n    let channels = this.props.histogramConfig.channels\r\n      .map((val, index) => (val.enabled ? index : null))\r\n      .filter((val) => val !== null);\r\n    if (this.state.isBrightfield) {\r\n      channels = [-1];\r\n    }\r\n    let stateObject = {\r\n      selectedChannels: channels,\r\n      dimensions: {\r\n        width: this.container.offsetWidth,\r\n        height: 120,\r\n      },\r\n    };\r\n\r\n    // if one channel selected, set min max state of this channel\r\n    if (channels.length === 1 && channels[0] !== -1) {\r\n      stateObject.min = histogramConfig.channels[channels[0]].min;\r\n      stateObject.max = histogramConfig.channels[channels[0]].max;\r\n      stateObject.gamma = validateGamma(\r\n        histogramConfig.channels[channels[0]].gamma\r\n      );\r\n    }\r\n    this.setMountedState(stateObject);\r\n  }\r\n\r\n  calcHist(img, channel) {\r\n    // create a temporary canvas to convert our image into imagedata array\r\n    let offScrCan = document.createElement(\"canvas\");\r\n    offScrCan.width = img.width;\r\n    offScrCan.height = img.height;\r\n    let ctx1 = offScrCan.getContext(\"2d\");\r\n\r\n    // draw image all over the canvas\r\n    ctx1.drawImage(img, 0, 0, img.width, img.height);\r\n\r\n    // read out image data array\r\n    let imgData = ctx1.getImageData(0, 0, img.width, img.height).data;\r\n\r\n    // step is 4 beacouse our data array is structured like this:\r\n    // [r0,g0,b0,a0, r1,g1,b1,a1, r2,g2,b2,a2, ...]\r\n    //let step = parseInt((img.width * img.height) / imgData.length, 10);\r\n    //let step = 4;\r\n    let step = parseInt(imgData.length / (img.width * img.height), 10);\r\n\r\n    // create zeros array\r\n    let histo = Array.from(Array(256), () => 1);\r\n    let histo2 = Array.from(Array(256), () => 1);\r\n\r\n    // count occuracys for each brightness value\r\n    for (let i = 0, n = imgData.length; i < n - 1; i += step) {\r\n      histo[imgData[i + channel]] += 1;\r\n    }\r\n\r\n    //interpolate histo values\r\n    for (let i = 2; i < histo.length - 2; i++) {\r\n      let sum = 0;\r\n      let count = 0;\r\n      for (let j = i - 2; j < i + 3; j++) {\r\n        if (histo[j] > 1) {\r\n          sum += histo[j];\r\n          count += 1;\r\n        }\r\n      }\r\n      if (count > 0) {\r\n        histo2[i] = sum / count;\r\n      } else {\r\n        histo2[i] = histo[i];\r\n      }\r\n    }\r\n\r\n    return histo2;\r\n  }\r\n\r\n  handleColorPickerClick = (e, index) => {\r\n    this.setMountedState({\r\n      selectedSingleChannel: index,\r\n      displayColorPicker: !this.state.displayColorPicker,\r\n    });\r\n    let selectedChannels = this.state.selectedChannels;\r\n    if (!selectedChannels.includes(index)) {\r\n      selectedChannels.push(index);\r\n      this.setMountedState({\r\n        selectedChannels: selectedChannels,\r\n      });\r\n    }\r\n  };\r\n\r\n  handleColorPickerClose = () => {\r\n    this.setMountedState({ displayColorPicker: false });\r\n  };\r\n\r\n  handleColorPickerChange = (color, channelIndex) => {\r\n    if (this.state.selectedSingleChannel >= 0) {\r\n      let newHistogramConfig = this.props.histogramConfig;\r\n      newHistogramConfig.channels[channelIndex].color = color;\r\n      this.props.onChange(newHistogramConfig);\r\n      this.forceUpdateWithTimeout(10);\r\n    }\r\n  };\r\n\r\n  handleLogLin() {\r\n    let newHistogramConfig = this.props.histogramConfig;\r\n    // toggle histogram scale\r\n    Object.assign(newHistogramConfig, {\r\n      scale:\r\n        newHistogramConfig.scale === HistogramScale.LINEAR\r\n          ? HistogramScale.LOGARITHMIC\r\n          : HistogramScale.LINEAR,\r\n    });\r\n\r\n    this.props.onChange(newHistogramConfig);\r\n    this.forceUpdateWithTimeout(10);\r\n  }\r\n\r\n  gammaFunction(x, gamma) {\r\n    gamma = 2 - gamma;\r\n    let y = gamma > 1 ? gamma ** 4 : gamma;\r\n    return x ** y;\r\n  }\r\n\r\n  drawHistogramBackground() {\r\n    const data = this.data;\r\n    if (this.backgroundCanvas) {\r\n      const max = 2 ** this.props.bitDepth - 1;\r\n      let visibleStep = 50;\r\n      switch (this.props.bitDepth) {\r\n        case 10:\r\n          visibleStep = 250;\r\n          break;\r\n        case 12:\r\n          visibleStep = 1000;\r\n          break;\r\n        case 14:\r\n          visibleStep = 2500;\r\n          break;\r\n        case 16:\r\n          visibleStep = 15000;\r\n          break;\r\n        default:\r\n      }\r\n      let ctx = this.backgroundCanvas.getContext(\"2d\");\r\n      let w = this.backgroundCanvas.width;\r\n      let h = this.backgroundCanvas.height;\r\n      ctx.clearRect(0, 0, w, h);\r\n      ctx.beginPath();\r\n      let step = (visibleStep * w) / max;\r\n      ctx.font = \"12px Arial\";\r\n      ctx.fillStyle = \"#ddd\";\r\n      for (let s = step, i = 1; s < w; s += step, i++) {\r\n        ctx.moveTo(s, 0);\r\n        ctx.lineTo(s, h);\r\n        ctx.fillText(i * visibleStep, s + 2, 12);\r\n      }\r\n      step = h / 5;\r\n      for (let s = step; s < h; s += step) {\r\n        ctx.moveTo(0, s);\r\n        ctx.lineTo(w, s);\r\n      }\r\n      ctx.strokeStyle = \"#ddd\";\r\n      ctx.closePath();\r\n      ctx.stroke();\r\n\r\n      let maxValues = 0;\r\n\r\n      for (let i = 0; i < data.datasets.length; i++) {\r\n        ctx.beginPath();\r\n        for (let j = 0; j < data.datasets[i].data.length; j++) {\r\n          maxValues = Math.max(maxValues, data.datasets[i].data[j]);\r\n        }\r\n      }\r\n\r\n      for (let i = 0; i < data.datasets.length; i++) {\r\n        ctx.beginPath();\r\n        ctx.lineWidth = 2;\r\n        ctx.strokeStyle = data.datasets[i].borderColor;\r\n        ctx.fillStyle = data.datasets[i].backgroundColor;\r\n        ctx.moveTo(0, h + 2);\r\n        ctx.globalAlpha = 1.0;\r\n        for (let j = 0; j < data.datasets[i].data.length; j++) {\r\n          let count = data.datasets[i].data[j];\r\n          let transformedCount = (h * count) / maxValues;\r\n          ctx.lineTo(\r\n            (j * w) / data.datasets[i].data.length,\r\n            h - transformedCount\r\n          );\r\n        }\r\n        ctx.lineTo(w, h + 2);\r\n        ctx.fill(\"nonzero\");\r\n        ctx.closePath();\r\n        ctx.stroke();\r\n      }\r\n    }\r\n  }\r\n\r\n  drawGammaLine() {\r\n    if (this.gammaCanvas) {\r\n      const width = this.gammaCanvas.width;\r\n      const height = this.gammaCanvas.height;\r\n      let ctx = this.gammaCanvas.getContext(\"2d\");\r\n      ctx.clearRect(0, 0, width, height);\r\n      ctx.beginPath();\r\n      ctx.moveTo(0, height);\r\n      for (let i = 0; i < this.gammaCanvas.width; i++) {\r\n        let x = i / this.gammaCanvas.width;\r\n        let res = this.gammaFunction(x, this.state.gamma);\r\n        ctx.lineTo(i, height - res * height);\r\n        ctx.moveTo(i, height - res * height);\r\n      }\r\n      ctx.lineTo(this.gammaCanvas.width, 0);\r\n      ctx.lineWidth = 3;\r\n      ctx.strokeStyle = \"#FFFFFF\";\r\n      ctx.closePath();\r\n      ctx.stroke();\r\n    }\r\n  }\r\n\r\n  // slider callback\r\n  handleMinMaxRange(values, gamma) {\r\n    let newHistogramConfig = this.props.histogramConfig;\r\n    for (let selectedChannel of this.state.selectedChannels) {\r\n      if (this.state.channelSelectMode === \"all\") {\r\n        // change for all channels\r\n        for (let channel of newHistogramConfig.channels) {\r\n          channel.min = values[0];\r\n          channel.max = values[1];\r\n          channel.gamma = gamma;\r\n        }\r\n      } else {\r\n        // change selected channel only\r\n        newHistogramConfig.channels[selectedChannel].min = values[0];\r\n        newHistogramConfig.channels[selectedChannel].max = values[1];\r\n        newHistogramConfig.channels[selectedChannel].gamma = gamma;\r\n      }\r\n    }\r\n\r\n    this.drawGammaLine();\r\n    this.props.onChange(newHistogramConfig);\r\n    this.forceUpdateWithTimeout(10);\r\n  }\r\n\r\n  forceUpdateWithTimeout = (delay) => {\r\n    setTimeout(() => {\r\n      if (this._isMounted) this.forceUpdate();\r\n    }, delay);\r\n  };\r\n\r\n  handleGammaChange() {\r\n    let newHistogramConfig = this.props.histogramConfig;\r\n    for (let selectedChannel of this.state.selectedChannels) {\r\n      // change selected channel only\r\n      newHistogramConfig.channels[\r\n        selectedChannel < 0 ? 0 : selectedChannel\r\n      ].gamma = this.state.gamma;\r\n    }\r\n    this.props.onChange(newHistogramConfig);\r\n    this.forceUpdateWithTimeout(10);\r\n  }\r\n\r\n  handleReset() {\r\n    let isBrightfield = this.state.isBrightfield;\r\n    let selectedChannels = this.state.selectedChannels;\r\n    if (!isBrightfield) {\r\n      let newHistogramConfig = this.props.histogramConfig;\r\n\r\n      for (let i = 0; i < newHistogramConfig.channels.length; i++) {\r\n        newHistogramConfig.channels[i].color =\r\n          this.state.originalHistogramConfig.channels[i].color;\r\n      }\r\n      Object.assign(newHistogramConfig, {\r\n        scale: HistogramScale.LOGARITHMIC,\r\n      });\r\n      this.scale = HistogramScale.LOGARITHMIC;\r\n      selectedChannels = Array.from(\r\n        Array(newHistogramConfig.channels.length),\r\n        (x, index) => index\r\n      );\r\n      selectedChannels =\r\n        selectedChannels.length > 0 && selectedChannels[0] === 0\r\n          ? [-1]\r\n          : selectedChannels;\r\n    } else {\r\n      selectedChannels = [0, 1, 2];\r\n    }\r\n\r\n    this.setMountedState({\r\n      singleChannelMode: false,\r\n      channelSelectMode: \"all\",\r\n      selectedChannels: selectedChannels,\r\n      min: 0,\r\n      max: 2 ** this.props.bitDepth - 1,\r\n      gamma: 1.0,\r\n      leftGammaValue: 0.25,\r\n      rightGammaValue: 0.75,\r\n    });\r\n    //this.props.onChange(newHistogramConfig);\r\n    this.handleMinMaxRange([0, 250], 1.0);\r\n    if (!isBrightfield) {\r\n      this.updateChannels(selectedChannels);\r\n      this.activateAllChannels();\r\n    }\r\n  }\r\n\r\n  handleMinMaxFit() {\r\n    const { histograms, selectedSingleChannel } = this.state;\r\n    let min = 0;\r\n    let max = 255;\r\n\r\n    let histo = Array.from(Array(256), () => 0); //to do real 16 bit\r\n    if (this.state.channelSelectMode === \"all\") {\r\n      // merge all channel histograms\r\n      for (let c = 0; c < histograms.length; c++) {\r\n        for (let i = 0; i < histograms[c].length; i++) {\r\n          histo[i] += histograms[c][i];\r\n        }\r\n      }\r\n    } else {\r\n      // use histogram of selected channel\r\n      histo = histograms[selectedSingleChannel];\r\n    }\r\n\r\n    if (histo) {\r\n      // accumulate all values\r\n      let sum = histo.reduce((total, val) => total + val);\r\n\r\n      // find left statistical border\r\n      let leftSide = 0;\r\n      for (min = 0; min < histo.length; min++) {\r\n        leftSide += histo[min] / sum;\r\n        if (leftSide > 0.0001) {\r\n          break;\r\n        }\r\n      }\r\n\r\n      // find right statistical border\r\n      let rightSide = 0;\r\n      for (max = 255; max >= 0; max--) {\r\n        rightSide += histo[max] / sum;\r\n        if (rightSide > 0.0001) {\r\n          break;\r\n        }\r\n      }\r\n\r\n      // apply calculated range\r\n      this.handleMinMaxRange([min, max], this.state.gamma);\r\n      this.setMountedState({\r\n        min: min,\r\n        max: max,\r\n      });\r\n    }\r\n  }\r\n\r\n  handleBestFit() {\r\n    const { histograms, selectedSingleChannel } = this.state;\r\n    let min = 0;\r\n    let max = 255;\r\n\r\n    let histo = Array.from(Array(256), () => 0);\r\n    if (this.state.channelSelectMode === \"all\") {\r\n      // merge all channel histograms\r\n      for (let c = 0; c < histograms.length; c++) {\r\n        for (let i = 0; i < histograms[c].length; i++) {\r\n          histo[i] += histograms[c][i];\r\n        }\r\n      }\r\n    } else {\r\n      // use histogram of selected channel\r\n      histo = histograms[selectedSingleChannel];\r\n    }\r\n\r\n    // accumulate all values\r\n    let sum = histo.reduce((total, val) => total + val);\r\n\r\n    // find left statistical border\r\n    let leftSide = 0;\r\n    for (min = 0; min < histo.length; min++) {\r\n      leftSide += histo[min] / sum;\r\n      if (leftSide > 0.0005) {\r\n        break;\r\n      }\r\n    }\r\n\r\n    // find right statistical border\r\n    let rightSide = 0;\r\n    for (max = 255; max >= 0; max--) {\r\n      rightSide += histo[max] / sum;\r\n      if (rightSide > 0.0005) {\r\n        break;\r\n      }\r\n    }\r\n\r\n    // apply calculated range\r\n    this.handleMinMaxRange([min, max], this.state.gamma);\r\n    this.setMountedState({\r\n      min: min,\r\n      max: max,\r\n    });\r\n  }\r\n\r\n  activateAllChannels = () => {\r\n    let selectedChannels = Array.from(\r\n      Array(this.props.histogramConfig.nChannels),\r\n      (x, index) => index\r\n    );\r\n    let validGamma = validateGamma(\r\n      this.props.histogramConfig.channels[selectedChannels[0]].gamma\r\n    );\r\n    this.setMountedState({\r\n      singleChannelMode: false,\r\n      selectedSingleChannel: selectedChannels[0],\r\n      selectedChannels: selectedChannels,\r\n      channelSelectMode: \"all\",\r\n      min:\r\n        this.props.histogramConfig.channels[selectedChannels[0]].min > 250\r\n          ? 0\r\n          : this.props.histogramConfig.channels[selectedChannels[0]].min,\r\n      max:\r\n        this.props.histogramConfig.channels[selectedChannels[0]].max > 255\r\n          ? 250\r\n          : this.props.histogramConfig.channels[selectedChannels[0]].max,\r\n      gamma: validGamma,\r\n      leftGammaValue: this.gammaFunction(0.25, validGamma),\r\n      rightGammaValue: this.gammaFunction(0.75, validGamma),\r\n    });\r\n    this.forceUpdateWithTimeout(10);\r\n    this.props.changeChannelSelectMode(\"all\");\r\n    this.updateChannels(selectedChannels);\r\n  };\r\n\r\n  changeChannelSelectMode = (e, value) => {\r\n    value = value ? \"single\" : \"all\";\r\n    let selectedChannels = this.state.selectedChannels;\r\n    if (value !== \"all\") {\r\n      selectedChannels = [Math.min.apply(Math, this.state.selectedChannels)];\r\n    }\r\n    let validGamma = validateGamma(\r\n      this.props.histogramConfig.channels[selectedChannels[0]].gamma\r\n    );\r\n    this.setMountedState({\r\n      singleChannelMode: value === \"single\",\r\n      selectedSingleChannel: selectedChannels[0],\r\n      selectedChannels: selectedChannels,\r\n      channelSelectMode: value,\r\n      min:\r\n        this.props.histogramConfig.channels[selectedChannels[0]].min > 250\r\n          ? 0\r\n          : this.props.histogramConfig.channels[selectedChannels[0]].min,\r\n      max:\r\n        this.props.histogramConfig.channels[selectedChannels[0]].max > 255\r\n          ? 250\r\n          : this.props.histogramConfig.channels[selectedChannels[0]].max,\r\n      gamma: validGamma,\r\n      leftGammaValue: this.gammaFunction(0.25, validGamma),\r\n      rightGammaValue: this.gammaFunction(0.75, validGamma),\r\n    });\r\n    this.props.changeChannelSelectMode(value);\r\n    this.updateChannels(selectedChannels);\r\n  };\r\n\r\n  changeChannel = (value) => {\r\n    //prevent deselecting all\r\n    if (value.length === 0) return;\r\n\r\n    if (this.state.channelSelectMode === \"single\") {\r\n      value = value.filter((v) => v !== this.state.selectedChannels[0]);\r\n    }\r\n    let validGamma = validateGamma(\r\n      this.props.histogramConfig.channels[value[0]].gamma\r\n    );\r\n    this.setMountedState({\r\n      selectedSingleChannel: value[0],\r\n      selectedChannels: value,\r\n      min:\r\n        this.props.histogramConfig.channels[value[0]].min > 250\r\n          ? 0\r\n          : this.props.histogramConfig.channels[value[0]].min,\r\n      max:\r\n        this.props.histogramConfig.channels[value[0]].max > 255\r\n          ? 250\r\n          : this.props.histogramConfig.channels[value[0]].max,\r\n      gamma: validGamma,\r\n      leftGammaValue: this.gammaFunction(0.25, validGamma),\r\n      rightGammaValue: this.gammaFunction(0.75, validGamma),\r\n    });\r\n\r\n    this.updateChannels(value);\r\n  };\r\n\r\n  /**\r\n   * Updates Channel Comfiguration in histogram like colors, etc.\r\n   * @param {Number[]} selectedChannels Selected Channel Indices\r\n   */\r\n  updateChannels(selectedChannels) {\r\n    if (selectedChannels.length > 0 && selectedChannels[0] === -1) {\r\n      selectedChannels = [0];\r\n    }\r\n    // hide or show channel layer\r\n    let newHistogramConfig = this.props.histogramConfig;\r\n    for (let i = 0; i < newHistogramConfig.channels.length; i++) {\r\n      newHistogramConfig.channels[i].enabled = selectedChannels.includes(i)\r\n        ? true\r\n        : false;\r\n    }\r\n    this.props.onChange(newHistogramConfig);\r\n    this.forceUpdateWithTimeout(10);\r\n  }\r\n\r\n  getEnabledChannels() {\r\n    let selectedChannels = [];\r\n    for (let i = 0; i < this.props.histogramConfig.length; i++) {\r\n      if (this.props.histogramConfig.channels[i].enabled) {\r\n        selectedChannels.push(i);\r\n      }\r\n    }\r\n    return selectedChannels.length > 0 ? selectedChannels : [-1];\r\n  }\r\n\r\n  updateRange(e) {\r\n    if (!this.state.lastX) {\r\n      this.setMountedState({ lastX: e.clientX });\r\n      return;\r\n    }\r\n    if (this.state.middleBarActive) {\r\n      let deltaX =\r\n        (255 * (e.clientX - this.state.lastX)) / this.state.dimensions.width;\r\n      let min = this.state.min;\r\n      let max = this.state.max;\r\n      if (deltaX < 0) {\r\n        let new_min = Math.max(0, min + deltaX);\r\n        deltaX = min > 0 ? new_min - min : 0;\r\n      } else {\r\n        let new_max = Math.min(this.state.dimensions.width, max + deltaX);\r\n        deltaX = new_max < 255 ? new_max - max : 255 - max;\r\n      }\r\n      min = Math.max(0, min + deltaX);\r\n      max = Math.min(255, max + deltaX);\r\n      this.setMountedState({\r\n        min: min,\r\n        max: max,\r\n        lastX: e.clientX,\r\n      });\r\n    }\r\n  }\r\n\r\n  renderHistogram() {\r\n    const { histogramConfig } = this.props;\r\n    const { histograms, dimensions } = this.state;\r\n    const data = this.data;\r\n\r\n    if (data.datasets.length === 0) {\r\n      data.datasets = this.state.datasets;\r\n    }\r\n    if (data.datasets.length === 0) {\r\n      return null;\r\n    }\r\n    if (histogramConfig.scale === HistogramScale.LOGARITHMIC) {\r\n      data.datasets = data.datasets.map((dataset) => {\r\n        dataset.data = dataset.data.map((p) => 10 * Math.log(p));\r\n        return dataset;\r\n      });\r\n    }\r\n\r\n    if (histograms.length === 0) {\r\n      return (\r\n        <div\r\n          height={this.state.dimensions.height}\r\n          width={this.state.dimensions.width}\r\n        ></div>\r\n      );\r\n    }\r\n    return (\r\n      <div\r\n        onDragStart={(e) => {\r\n          e.preventDefault();\r\n        }}\r\n        onMouseMove={(e) => {\r\n          if (e.buttons === 1) {\r\n            this.updateRange(e);\r\n          } else {\r\n            if (\r\n              this.state.leftBarActive ||\r\n              this.state.middleBarActive ||\r\n              this.state.rightBarActive\r\n            ) {\r\n              this.setMountedState({\r\n                middleBarActive: false,\r\n              });\r\n            }\r\n          }\r\n        }}\r\n        onMouseUp={() => {\r\n          this.handleMinMaxRange(\r\n            [this.state.min, this.state.max],\r\n            this.state.gamma\r\n          );\r\n        }}\r\n      >\r\n        {dimensions && (\r\n          <React.Fragment>\r\n            <canvas\r\n              width={dimensions.width}\r\n              style={{\r\n                width: \"100%\",\r\n                height: \"100%\",\r\n                position: \"absolute\",\r\n                background: \"#aaa\",\r\n              }}\r\n              ref={(c) => {\r\n                this.backgroundCanvas = c;\r\n                this.drawHistogramBackground();\r\n              }}\r\n            />\r\n            <div\r\n              style={{\r\n                position: \"absolute\",\r\n                top: 0,\r\n                left: (dimensions.width / 255) * this.state.min + \"px\",\r\n                right: (dimensions.width / 255) * (255 - this.state.max) + \"px\",\r\n                bottom: 0,\r\n                cursor: \"all-scroll\",\r\n              }}\r\n              onMouseDown={(e) => {\r\n                this.setMountedState({\r\n                  middleBarActive: true,\r\n                  lastX: e.clientX,\r\n                });\r\n              }}\r\n            >\r\n              {/* Line */}\r\n              <canvas\r\n                style={{ width: \"100%\", height: \"100%\" }}\r\n                ref={(c) => {\r\n                  this.gammaCanvas = c;\r\n                  this.drawGammaLine();\r\n                }}\r\n              />\r\n              <div className=\"slider-vertical-outer\" style={{ left: \"25%\" }}>\r\n                <input\r\n                  ref={(c) => (this.leftGamma = c)}\r\n                  value={this.state.leftGammaValue}\r\n                  onMouseDown={(e) => {\r\n                    e.stopPropagation();\r\n                  }}\r\n                  onChange={() => {\r\n                    let x = 0.25;\r\n                    let res = this.leftGamma.value;\r\n                    let gamma = Math.log(res) / Math.log(x);\r\n                    if (gamma > 1) {\r\n                      gamma = gamma ** 0.25;\r\n                    }\r\n                    gamma = 2 - gamma;\r\n                    this.setMountedState({\r\n                      gamma: gamma,\r\n                      leftGammaValue: res,\r\n                      rightGammaValue: this.gammaFunction(0.75, gamma),\r\n                    });\r\n                  }}\r\n                  onMouseUp={() => {\r\n                    this.handleGammaChange();\r\n                    this.leftGamma.blur();\r\n                  }}\r\n                  type=\"range\"\r\n                  min=\"0.01\"\r\n                  max=\"0.99\"\r\n                  step=\"0.01\"\r\n                  className=\"slider-vertical\"\r\n                />\r\n              </div>\r\n              <div className=\"slider-vertical-outer\" style={{ left: \"75%\" }}>\r\n                <input\r\n                  ref={(c) => (this.rightGamma = c)}\r\n                  value={this.state.rightGammaValue}\r\n                  onMouseDown={(e) => {\r\n                    e.stopPropagation();\r\n                  }}\r\n                  onChange={() => {\r\n                    let x = 0.75;\r\n                    let res = this.rightGamma.value;\r\n                    let gamma = Math.log(res) / Math.log(x);\r\n                    if (gamma > 1) {\r\n                      gamma = gamma ** 0.25;\r\n                    }\r\n                    gamma = 2 - gamma;\r\n                    if (gamma > 0) {\r\n                      this.setMountedState({\r\n                        gamma: gamma,\r\n                        leftGammaValue: this.gammaFunction(0.25, gamma),\r\n                        rightGammaValue: res,\r\n                      });\r\n                    }\r\n                  }}\r\n                  onMouseUp={() => {\r\n                    this.handleGammaChange();\r\n                    this.rightGamma.blur();\r\n                  }}\r\n                  type=\"range\"\r\n                  min=\"0.01\"\r\n                  max=\"0.99\"\r\n                  step=\"0.01\"\r\n                  className=\"slider-vertical\"\r\n                />\r\n              </div>\r\n\r\n              <div\r\n                className=\"hover-label\"\r\n                style={{\r\n                  position: \"absolute\",\r\n                  left: \"0\",\r\n                  top: \"0\",\r\n                  padding: \"0 5px\",\r\n                  fontSize: \"10px\",\r\n                  background: \"#555\",\r\n                  color: \"white\",\r\n                }}\r\n              >\r\n                Min:{\" \"}\r\n                {Math.round(\r\n                  (this.state.min * (2 ** this.props.bitDepth - 1)) / 255\r\n                )}\r\n              </div>\r\n\r\n              <div\r\n                className=\"hover-label\"\r\n                style={{\r\n                  position: \"absolute\",\r\n                  right: \"0\",\r\n                  top: \"0\",\r\n                  padding: \"0 5px\",\r\n                  fontSize: \"10px\",\r\n                  background: \"#555\",\r\n                  color: \"white\",\r\n                }}\r\n              >\r\n                Max:{\" \"}\r\n                {Math.round(\r\n                  (this.state.max * (2 ** this.props.bitDepth - 1)) / 255\r\n                )}\r\n              </div>\r\n            </div>\r\n\r\n            <div\r\n              style={{\r\n                position: \"absolute\",\r\n                left: \"0\",\r\n                top: \"0\",\r\n                borderRight: \"2px solid black\",\r\n                height: \"100%\",\r\n                width:\r\n                  (this.state.dimensions.width / 255) * this.state.min + \"px\",\r\n                background: \"rgba(0,0,0,0.5)\",\r\n              }}\r\n            ></div>\r\n\r\n            <div\r\n              style={{\r\n                position: \"absolute\",\r\n                right: \"0\",\r\n                top: \"0\",\r\n                borderLeft: \"2px solid black\",\r\n                height: \"100%\",\r\n                width:\r\n                  (this.state.dimensions.width / 255) * (255 - this.state.max) +\r\n                  \"px\",\r\n                background: \"rgba(0,0,0,0.5)\",\r\n              }}\r\n            ></div>\r\n\r\n            <div\r\n              className=\"hover-label\"\r\n              style={{\r\n                position: \"absolute\",\r\n                right: \"0\",\r\n                bottom: \"0\",\r\n                padding: \"0 5px\",\r\n                fontSize: \"10px\",\r\n                background: \"#555\",\r\n                color: \"white\",\r\n              }}\r\n            >\r\n              Gamma:{\" \"}\r\n              {(this.state.gamma < 1\r\n                ? (2 - this.state.gamma) ** 4\r\n                : 2 - this.state.gamma\r\n              ).toFixed(2, 10)}\r\n            </div>\r\n          </React.Fragment>\r\n        )}\r\n      </div>\r\n    );\r\n  }\r\n\r\n  onExportHistogramParameters = () => {\r\n    const strData = this.props.projectContext.getProjectStringInfos();\r\n    const downloadName =\r\n      strData.name +\r\n      \"_\" +\r\n      strData.date +\r\n      \"_\" +\r\n      this.props.projectContext.user +\r\n      \".hishsa\";\r\n\r\n    let dataStr =\r\n      \"data:text/json;charset=utf-8,\" +\r\n      encodeURIComponent(JSON.stringify(this.props.histogramConfig));\r\n    let dlAnchorElem = document.createElement(\"a\");\r\n    dlAnchorElem.setAttribute(\"href\", dataStr);\r\n    dlAnchorElem.setAttribute(\"download\", downloadName);\r\n    dlAnchorElem.click();\r\n    dlAnchorElem.remove();\r\n  };\r\n\r\n  onImportHistogramParameters = (e) => {\r\n    let files = e.target.files;\r\n    if (files.length <= 0) return false;\r\n\r\n    let fr = new FileReader();\r\n    fr.onload = (e) => {\r\n      try {\r\n        let selectedCs = [];\r\n        let loadedConfig = JSON.parse(e.target.result);\r\n        if (\r\n          this.props.histogramConfig.channels.length !==\r\n          loadedConfig.channels.length\r\n        ) {\r\n          window.showErrorSnackbar(\"Not compatible with this histogram!\");\r\n          return;\r\n        }\r\n        let newHistogramConfig = this.props.histogramConfig;\r\n        let stateToSet = true;\r\n        let newStateObject = {};\r\n        for (let i = 0; i < loadedConfig.channels.length; i++) {\r\n          let c = loadedConfig.channels[i];\r\n          if (c.enabled) {\r\n            selectedCs.push(i);\r\n            if (stateToSet) {\r\n              let validGamma = validateGamma(c.gamma);\r\n              newStateObject = {\r\n                min: c.min,\r\n                max: c.max,\r\n                gamma: validGamma,\r\n                leftGammaValue: this.gammaFunction(0.25, validGamma),\r\n                rightGammaValue: this.gammaFunction(0.75, validGamma),\r\n              };\r\n              stateToSet = false;\r\n            }\r\n          }\r\n        }\r\n        if (this.state.isBrightfield) selectedCs = [-1];\r\n\r\n        newStateObject.selectedChannels = selectedCs;\r\n        Object.assign(newHistogramConfig, {\r\n          scale: loadedConfig.scale,\r\n        });\r\n\r\n        this.setMountedState(newStateObject);\r\n        newHistogramConfig.channels = loadedConfig.channels;\r\n\r\n        this.props.onChange(newHistogramConfig);\r\n        this.forceUpdateWithTimeout(10);\r\n      } catch (e) {\r\n        console.log(\"import errror:\", e);\r\n        window.showErrorSnackbar(\"File not supported!\");\r\n      }\r\n    };\r\n    fr.readAsText(files.item(0));\r\n  };\r\n\r\n  initData() {\r\n    const { histogramConfig } = this.props;\r\n    const { histograms, selectedChannels } = this.state;\r\n\r\n    let datasets = [];\r\n    let channelsArray = histogramConfig.channels;\r\n    let isBrightfield =\r\n      (histograms.length === 0 || histograms.length === 3) &&\r\n      histogramConfig.channels.length === 1;\r\n    if (isBrightfield) {\r\n      channelsArray = [\r\n        {\r\n          enabled: true,\r\n          name: \"R\",\r\n          color: \"#ff0000\",\r\n        },\r\n        {\r\n          enabled: true,\r\n          name: \"G\",\r\n          color: \"#00ff00\",\r\n        },\r\n        {\r\n          enabled: true,\r\n          name: \"B\",\r\n          color: \"#0000ff\",\r\n        },\r\n      ];\r\n    }\r\n    if (selectedChannels.includes(-1)) {\r\n      // display all channels\r\n      for (let c = 0; c < channelsArray.length; c++) {\r\n        // skip disabled channels\r\n        if (!channelsArray[c].enabled || !histograms[c]) continue;\r\n\r\n        // push channel to dataset\r\n        datasets.push({\r\n          label: channelsArray[c].name,\r\n          backgroundColor:\r\n            channelsArray[c].color !== -1\r\n              ? hexToRGB(channelsArray[c].color, 0.2)\r\n              : hexToRGB(\"#000000\", 0.2),\r\n          borderColor:\r\n            channelsArray[c].color !== -1 ? channelsArray[c].color : \"#000000\",\r\n          borderWidth: 1,\r\n          data: histograms[c],\r\n        });\r\n      }\r\n    } else {\r\n      for (let selectedChannel of selectedChannels) {\r\n        if (typeof histograms[selectedChannel] === \"undefined\") continue;\r\n        // dispaly single selected channel\r\n        datasets.push({\r\n          label: channelsArray[selectedChannel].name,\r\n          backgroundColor:\r\n            channelsArray[selectedChannel].color !== -1\r\n              ? hexToRGB(channelsArray[selectedChannel].color, 0.2)\r\n              : hexToRGB(\"#000000\", 0.2),\r\n          borderColor:\r\n            channelsArray[selectedChannel].color !== -1\r\n              ? channelsArray[selectedChannel].color\r\n              : \"#000000\",\r\n          borderWidth: 1,\r\n          data: histograms[selectedChannel],\r\n        });\r\n      }\r\n    }\r\n    this.data = {\r\n      labels: Array.from(Array(256), (x, index) => index),\r\n      datasets: datasets,\r\n    };\r\n  }\r\n\r\n  render() {\r\n    const { histogramConfig, classes, projectType } = this.props;\r\n    const { dimensions, isBrightfield } = this.state;\r\n\r\n    this.initData();\r\n\r\n    return (\r\n      <div className={classes.root} ref={(el) => (this.container = el)}>\r\n        <div className={classes.toolbar}>\r\n          <Tooltip disableInteractive title=\"Reset\">\r\n            <IconButton\r\n              style={{\r\n                float: \"right\",\r\n                marginTop:\r\n                  projectType.includes(\"HistoPointCounting\") ||\r\n                  projectType.includes(\"HistoClassification\")\r\n                    ? \"-34px\"\r\n                    : \"0px\",\r\n              }}\r\n              className={classes.toolButtonRight}\r\n              onClick={() => this.handleReset()}\r\n              size=\"large\"\r\n            >\r\n              <FontAwesomeIcon icon={faUndo} />\r\n            </IconButton>\r\n          </Tooltip>\r\n          {!(\r\n            projectType.includes(\"HistoPointCounting\") ||\r\n            projectType.includes(\"HistoClassification\")\r\n          ) && (\r\n            <div>\r\n              <Tooltip disableInteractive title=\"Linear / logarithmic\">\r\n                <IconButton\r\n                  className={classes.toolButton}\r\n                  style={{\r\n                    color:\r\n                      histogramConfig.scale === HistogramScale.LOGARITHMIC &&\r\n                      \"#3F51B5\",\r\n                  }}\r\n                  onClick={() => this.handleLogLin()}\r\n                  size=\"large\"\r\n                >\r\n                  <FontAwesomeIcon icon={faChartArea} />\r\n                </IconButton>\r\n              </Tooltip>\r\n\r\n              {!isBrightfield && (\r\n                <React.Fragment>\r\n                  <Tooltip disableInteractive title=\"Min-max-fit\">\r\n                    <IconButton\r\n                      className={classes.toolButton}\r\n                      onClick={() => this.handleMinMaxFit()}\r\n                      size=\"large\"\r\n                    >\r\n                      <FontAwesomeIcon icon={faArrowsAltH} />\r\n                    </IconButton>\r\n                  </Tooltip>\r\n                  <Tooltip disableInteractive title=\"Best-fit\">\r\n                    <IconButton\r\n                      className={classes.toolButton}\r\n                      onClick={() => this.handleBestFit()}\r\n                      size=\"large\"\r\n                    >\r\n                      <FontAwesomeIcon icon={faChartLine} />\r\n                    </IconButton>\r\n                  </Tooltip>\r\n                </React.Fragment>\r\n              )}\r\n              <Tooltip disableInteractive title=\"Export histogram settings\">\r\n                <IconButton\r\n                  className={classes.toolButton}\r\n                  onClick={this.onExportHistogramParameters}\r\n                  size=\"large\"\r\n                >\r\n                  <GetApp />\r\n                </IconButton>\r\n              </Tooltip>\r\n              <Tooltip disableInteractive title=\"Import histogram settings\">\r\n                <IconButton\r\n                  className={classes.toolButton}\r\n                  onClick={() =>\r\n                    document.getElementById(\"selectHistogramFile\").click()\r\n                  }\r\n                  size=\"large\"\r\n                >\r\n                  <Publish />\r\n                </IconButton>\r\n              </Tooltip>\r\n              <input\r\n                type=\"file\"\r\n                id=\"selectHistogramFile\"\r\n                accept=\".json, .hishsa\"\r\n                style={{ position: \"absolute\", top: \"-150px\" }}\r\n                onChange={this.onImportHistogramParameters}\r\n              />\r\n            </div>\r\n          )}\r\n        </div>\r\n        <div className=\"histogram-outer\">\r\n          <div className={classes.chartContainer} height={null} width={null}>\r\n            {dimensions && this.renderHistogram()}\r\n          </div>\r\n          <div className={classes.gradientBar} />\r\n          <div className=\"slidecontainer\">\r\n            <input\r\n              ref={(c) => (this.slider1 = c)}\r\n              onChange={() => {\r\n                this.setMountedState({\r\n                  min: Math.min(\r\n                    parseFloat(this.slider1.value),\r\n                    this.state.max - 5\r\n                  ),\r\n                });\r\n              }}\r\n              onMouseUp={() => {\r\n                let min = Math.min(\r\n                  parseFloat(this.slider1.value),\r\n                  this.state.max - 5\r\n                );\r\n                let max = this.state.max;\r\n                this.handleMinMaxRange([min, max], this.state.gamma);\r\n                this.slider1.blur();\r\n              }}\r\n              value={this.state.min}\r\n              type=\"range\"\r\n              min=\"0\"\r\n              max=\"255\"\r\n              className=\"slider-bar\"\r\n            />\r\n            {dimensions && (\r\n              <input\r\n                ref={(c) => (this.sliderGamma = c)}\r\n                style={{\r\n                  marginLeft: (dimensions.width / 255) * this.state.min + \"px\",\r\n                  width:\r\n                    (dimensions.width * (this.state.max - this.state.min)) /\r\n                      255 +\r\n                    \"px\",\r\n                }}\r\n                onChange={() => {\r\n                  let gamma = parseFloat(this.sliderGamma.value);\r\n                  this.setMountedState({\r\n                    gamma: gamma,\r\n                    leftGammaValue: this.gammaFunction(0.25, gamma),\r\n                    rightGammaValue: this.gammaFunction(0.75, gamma),\r\n                  });\r\n                  this.drawGammaLine();\r\n                }}\r\n                onMouseUp={() => {\r\n                  this.handleGammaChange();\r\n                  this.sliderGamma.blur();\r\n                }}\r\n                value={this.state.gamma}\r\n                type=\"range\"\r\n                min=\"0.00\"\r\n                max=\"1.99\"\r\n                step=\"0.01\"\r\n                className=\"slider\"\r\n              />\r\n            )}\r\n\r\n            <input\r\n              ref={(c) => (this.slider2 = c)}\r\n              onChange={() => {\r\n                this.setMountedState({\r\n                  max: Math.max(\r\n                    parseFloat(this.slider2.value),\r\n                    this.state.min + 5\r\n                  ),\r\n                });\r\n              }}\r\n              onMouseUp={() => {\r\n                let min = this.state.min;\r\n                let max = Math.max(this.slider2.value, min + 5);\r\n                this.handleMinMaxRange([min, max], this.state.gamma);\r\n                this.slider2.blur();\r\n              }}\r\n              value={this.state.max}\r\n              type=\"range\"\r\n              min=\"0\"\r\n              max=\"255\"\r\n              className=\"slider-bar\"\r\n            />\r\n          </div>\r\n        </div>\r\n        {!isBrightfield &&\r\n          !(\r\n            projectType.includes(\"HistoPointCounting\") ||\r\n            projectType.includes(\"HistoClassification\")\r\n          ) && (\r\n            <React.Fragment>\r\n              <button\r\n                className={classes.actionButton}\r\n                onClick={() => this.activateAllChannels()}\r\n              >\r\n                ALL\r\n              </button>\r\n              <ToggleButtonGroup\r\n                className={classes.toggleContainer}\r\n                value={this.state.selectedChannels}\r\n                onChange={(e, value) => this.changeChannel(value)}\r\n              >\r\n                {histogramConfig.channels.map((channel, index) => (\r\n                  <Tooltip\r\n                    key={index}\r\n                    disableInteractive\r\n                    title={\"Toggle with [ALT] + [\" + (index + 1) + \"]\"}\r\n                  >\r\n                    <ToggleButton\r\n                      id={\"channel_\" + index}\r\n                      value={index}\r\n                      onClick={() => {\r\n                        this.setMountedState({\r\n                          lastClickedChannel: index,\r\n                        });\r\n                      }}\r\n                      // onDoubleClick={(e) =>\r\n                      //   this.handleColorPickerClick(e, index)\r\n                      // }\r\n                    >\r\n                      <span\r\n                        className={classes.toggleBtnContent}\r\n                        style={{\r\n                          pointerEvents:\r\n                            index === this.state.lastClickedChannel\r\n                              ? \"all\"\r\n                              : \"none\",\r\n                        }}\r\n                      >\r\n                        <div className={classes.channelLabel}>\r\n                          {channel.name}{\" \"}\r\n                          {this.state.selectedChannels.includes(index)}\r\n                        </div>\r\n                        <SketchColorPicker\r\n                          color={channel.color}\r\n                          handleChange={(color) => {\r\n                            this.handleColorPickerChange(color, index);\r\n                          }}\r\n                        />\r\n                      </span>\r\n                    </ToggleButton>\r\n                  </Tooltip>\r\n                ))}\r\n              </ToggleButtonGroup>\r\n              <FormControlLabel\r\n                control={\r\n                  <Checkbox\r\n                    name=\"CheckboxSingleChannel\"\r\n                    onChange={(e, value) =>\r\n                      this.changeChannelSelectMode(e, value)\r\n                    }\r\n                    color=\"primary\"\r\n                    checked={this.state.channelSelectMode === \"single\"}\r\n                    value=\"singleChannelMode\"\r\n                  />\r\n                }\r\n                label=\"Single Channel\"\r\n              />\r\n            </React.Fragment>\r\n          )}\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\n// define the component's interface\r\nHistogram.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  histogramConfig: PropTypes.object,\r\n  bitDepth: PropTypes.number,\r\n  channelSelectMode: PropTypes.string.isRequired,\r\n  changeChannelSelectMode: PropTypes.func,\r\n  id: PropTypes.string.isRequired,\r\n  onChange: PropTypes.func,\r\n  projectType: PropTypes.string,\r\n  projectContext: PropTypes.object,\r\n};\r\n\r\nexport default withStyles(styles)(Histogram);\r\n","import { withPersistentStorage } from \"./PersistentStorageContext\";\r\nimport { withProjectHistory } from \"./ProjectHistoryContext\";\r\nimport { withProject } from \"./ProjectContext\";\r\nimport { withSpinloader } from \"../../common/components/Spinloader\";\r\n\r\n/**\r\n * Wraps often used react contexts arrour a component and saves some lines ^^\r\n *\r\n * @param {React.Component} component - React Component that will be wrapped\r\n */\r\nexport const withAllViewerContexts = (component) =>\r\n  withPersistentStorage(\r\n    withProjectHistory(withProject(withSpinloader(component)))\r\n  );\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport withStyles from \"@mui/styles/withStyles\";\r\nimport List from \"@mui/material/List\";\r\nimport ListItem from \"@mui/material/ListItem\";\r\nimport Divider from \"@mui/material/Divider\";\r\nimport ListItemText from \"@mui/material/ListItemText\";\r\nimport ListItemAvatar from \"@mui/material/ListItemAvatar\";\r\nimport Avatar from \"@mui/material/Avatar\";\r\nimport Typography from \"@mui/material/Typography\";\r\n\r\n// define the component's styling\r\nconst styles = () => ({\r\n  root: {\r\n    background: \"white\",\r\n    height: \"100%\",\r\n    marginLeft: 5,\r\n  },\r\n  headline: {\r\n    padding: 16,\r\n    paddingBottom: 8,\r\n  },\r\n  inline: {\r\n    display: \"inline\",\r\n  },\r\n});\r\n\r\nconst students = [\r\n  {\r\n    primary: \"\",\r\n    name: \"Ali Conners\",\r\n    avatar: \"/static/images/avatar/1.jpg\",\r\n    comment: \" — UKE\",\r\n  },\r\n  {\r\n    primary: \"\",\r\n    name: \"Scott\",\r\n    avatar: \"/static/images/avatar/1.jpg\",\r\n    comment: \" — KIT\",\r\n  },\r\n  {\r\n    primary: \"\",\r\n    name: \"Jennifer\",\r\n    avatar: \"/static/images/avatar/1.jpg\",\r\n    comment: \" — KIT\",\r\n  },\r\n  {\r\n    primary: \"\",\r\n    name: \"Alex\",\r\n    avatar: \"/static/images/avatar/1.jpg\",\r\n    comment: \" — KIT\",\r\n  },\r\n  {\r\n    primary: \"\",\r\n    name: \"Sandra Adams\",\r\n    avatar: \"/static/images/avatar/1.jpg\",\r\n    comment: \" — Tübingen\",\r\n  },\r\n];\r\n\r\nclass ClassroomChat extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n    this.state = {};\r\n  }\r\n\r\n  render() {\r\n    const { classes, classRoomChatWidth } = this.props;\r\n    return (\r\n      <div\r\n        style={{\r\n          width: classRoomChatWidth - 5,\r\n          display: classRoomChatWidth > 0 ? \"block\" : \"none\",\r\n        }}\r\n        className={classes.root}\r\n      >\r\n        <Typography className={classes.headline} variant=\"h6\" id=\"tableTitle\">\r\n          Classroom\r\n        </Typography>\r\n        <List className={classes.root}>\r\n          {students.map((student, idx) => {\r\n            return (\r\n              <span key={idx}>\r\n                <ListItem alignItems=\"flex-start\">\r\n                  <ListItemAvatar>\r\n                    <Avatar alt={student.name} src={student.avatar} />\r\n                  </ListItemAvatar>\r\n                  <ListItemText\r\n                    primary=\"\"\r\n                    secondary={\r\n                      <React.Fragment>\r\n                        <Typography\r\n                          component=\"span\"\r\n                          variant=\"body2\"\r\n                          className={classes.inline}\r\n                          color=\"textPrimary\"\r\n                        >\r\n                          {student.name}\r\n                        </Typography>\r\n                        {student.comment}\r\n                      </React.Fragment>\r\n                    }\r\n                  />\r\n                </ListItem>\r\n                <Divider variant=\"inset\" component=\"li\" />\r\n              </span>\r\n            );\r\n          })}\r\n        </List>\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\n// define the component's interface\r\nClassroomChat.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  classRoomChatWidth: PropTypes.number,\r\n};\r\n\r\nexport default withStyles(styles)(ClassroomChat);\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport Backend from \"../../common/utils/Backend\";\r\nimport { configureImage, colorInImage } from \"../utils/RendererUtils\";\r\nimport { getParentIndexLayer } from \"../utils/StructuresUtils\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\nimport withTheme from \"@mui/styles/withTheme\";\r\nimport { Tooltip, IconButton } from \"@mui/material\";\r\nimport CircularProgress from \"@mui/material/CircularProgress\";\r\nimport { withTiles } from \"../contexts/TilesContext\";\r\nimport { faLayerGroup } from \"@fortawesome/free-solid-svg-icons\";\r\nimport { ArrowDropUp, ArrowDropDown } from \"@mui/icons-material\";\r\nimport { FontAwesomeIcon } from \"@fortawesome/react-fontawesome\";\r\n\r\nconst styles = {\r\n  root: {\r\n    position: \"absolute\",\r\n    bottom: 5,\r\n    left: 5,\r\n    border: \"2px solid rgb(85, 85, 85)\",\r\n    opacity: 0.8,\r\n  },\r\n  canvas: {\r\n    position: \"relative\",\r\n  },\r\n  zBar: {\r\n    position: \"absolute\",\r\n    top: 10,\r\n    bottom: 16,\r\n    left: 10,\r\n    width: 30,\r\n    transition: \"opacity 0.15s ease-in-out\",\r\n  },\r\n  zStepUp: {\r\n    color: \"#ffffff\",\r\n    position: \"absolute\",\r\n    top: 28,\r\n    left: 0,\r\n    width: 30,\r\n    height: 30,\r\n    padding: 0,\r\n  },\r\n  zStepDown: {\r\n    color: \"#ffffff\",\r\n    position: \"absolute\",\r\n    top: 76,\r\n    left: 0,\r\n    width: 30,\r\n    height: 30,\r\n    padding: 0,\r\n  },\r\n  zStackIcon: {\r\n    color: \"#ffffff\",\r\n    position: \"absolute\",\r\n    left: 6,\r\n    top: 6,\r\n  },\r\n  zIndex: {\r\n    color: \"#ffffff\",\r\n    position: \"absolute\",\r\n    top: 54,\r\n    left: 0,\r\n    width: 30,\r\n    height: 30,\r\n    textAlign: \"center\",\r\n  },\r\n};\r\n\r\nclass CroppedImage extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n\r\n    this.state = {\r\n      pd: 10,\r\n      zoomSpeed: 10,\r\n    };\r\n\r\n    this.drawingEnabled = false;\r\n    this.canvasFactor1 = 1;\r\n    this.left = 1;\r\n    this.top = 1;\r\n    this.mousepos = {\r\n      x: 0,\r\n      y: 0,\r\n    };\r\n    this.mouseOnCanvas = false;\r\n    this.positionInLayer = -1;\r\n    this.previousPageIndex = 0;\r\n    this.loadedCount = 0;\r\n    this.fullyLoadedCount = 0;\r\n    this.imgs = [];\r\n    this.imgs1 = [];\r\n    this.visibleRegions = [];\r\n    this.r = null;\r\n  }\r\n\r\n  componentDidMount = () => {\r\n    // set index for roi\r\n    this.props.roI.galleryIndex = this.props.index;\r\n\r\n    // load focus Z-Stack\r\n    if (this.props.roI.z) {\r\n      this.props.roI.firstTimeGallery = true;\r\n      this.validateZ();\r\n    }\r\n\r\n    // bind mouse wheel events\r\n    this.canvas.addEventListener(\r\n      \"DOMMouseScroll\",\r\n      (e) => this.mousewheel(e),\r\n      true\r\n    );\r\n    this.canvas.addEventListener(\"mousewheel\", (e) => this.mousewheel(e), {\r\n      passive: false,\r\n    });\r\n\r\n    // get drawing context from canvas\r\n    this.ctx = this.canvas.getContext(\"2d\");\r\n\r\n    // converts the relative size css information into an absolute size which we can access\r\n    this.width = this.canvas.width = this.canvas.offsetWidth;\r\n    this.height = this.canvas.height = this.canvas.offsetHeight;\r\n  };\r\n\r\n  componentWillUnmount() {\r\n    this.canvas.removeEventListener(\r\n      \"DOMMouseScroll\",\r\n      (e) => this.mousewheel(e),\r\n      true\r\n    );\r\n    this.canvas.removeEventListener(\"mousewheel\", (e) => this.mousewheel(e), {\r\n      passive: false,\r\n    });\r\n  }\r\n\r\n  componentDidUpdate() {\r\n    const { roI, selectedWithKey } = this.props;\r\n    // if roi was selected with key --> scroll that roi is on top of screen\r\n    if (roI.selected && roI.selectedWithKey && selectedWithKey) {\r\n      this.props.scroll(this.canvas.getBoundingClientRect().top);\r\n    }\r\n    // redraw image when the component updates\r\n    this.draw();\r\n  }\r\n\r\n  UNSAFE_componentWillUpdate() {\r\n    const { roI } = this.props;\r\n    // check if new page\r\n    if (this.previousPageIndex !== this.props.tiles.getPageIndex()) {\r\n      this.previousPageIndex = this.props.tiles.getPageIndex();\r\n      // calculate zoomspeed depending on width or height of roi\r\n      let imgBoundWidth = roI.bounds.right - roI.bounds.left;\r\n      let imgBoundHeight = roI.bounds.bottom - roI.bounds.top;\r\n      let zoomSp;\r\n      if (imgBoundWidth >= imgBoundHeight) {\r\n        zoomSp = imgBoundWidth * 0.1;\r\n        this.setState({ zoomSpeed: zoomSp }); // 10%\r\n      } else {\r\n        zoomSp = imgBoundHeight * 0.1;\r\n        this.setState({ zoomSpeed: zoomSp }); // 10%\r\n      }\r\n      // reset variables\r\n      this.loadedCount = 0;\r\n      this.imgs = [];\r\n      this.imgs1 = [];\r\n      this.setState({ pd: 10 });\r\n    }\r\n    this.validateZ();\r\n    // reset\r\n    this.loadedCount = 0;\r\n  }\r\n\r\n  UNSAFE_componentWillMount() {\r\n    const { roI } = this.props;\r\n    // calculate zoomspeed depending on width or height of roi\r\n    let imgBoundWidth = roI.bounds.right - roI.bounds.left;\r\n    let imgBoundHeight = roI.bounds.bottom - roI.bounds.top;\r\n    let zoomSp;\r\n    if (imgBoundWidth >= imgBoundHeight) {\r\n      zoomSp = imgBoundWidth * 0.1; // 10%\r\n      this.setState({ zoomSpeed: zoomSp });\r\n    } else {\r\n      zoomSp = imgBoundHeight * 0.1; // 10%\r\n      this.setState({ zoomSpeed: zoomSp });\r\n    }\r\n    this.validateZ();\r\n  }\r\n\r\n  // if no z level is set --> use middle z level\r\n  validateZ = () => {\r\n    if (this.props.roI.z === -1) {\r\n      this.props.roI.z = this.props.globalZ;\r\n    }\r\n  };\r\n\r\n  findVisibleRois = (pd) => {\r\n    const { roI, structures, selectedLayer } = this.props;\r\n    // only return rois that are visible with given padding / zoom --> use tree\r\n    let parentLayerIndex = getParentIndexLayer(\r\n      structures[selectedLayer],\r\n      structures\r\n    );\r\n    return this.props.tools[this.props.activeTool].roiLayers[\r\n      parentLayerIndex\r\n    ].tree.search({\r\n      minX: roI.bounds.left - pd,\r\n      minY: roI.bounds.top - pd,\r\n      maxX: roI.bounds.right + pd,\r\n      maxY: roI.bounds.bottom + pd,\r\n    });\r\n  };\r\n\r\n  getPageForChannel(c) {\r\n    // calculate page index for tile\r\n    return (\r\n      Math.round(this.props.t) *\r\n        this.props.ome.channels.length *\r\n        this.props.ome.sizeZ +\r\n      Math.round(this.props.roI.z) * this.props.ome.channels.length +\r\n      c\r\n    );\r\n  }\r\n\r\n  areAllImagesComplete = (imgs) => {\r\n    // check if given images are completely loaded\r\n    let allComplete = true;\r\n    imgs.forEach((element) => {\r\n      if (!element.complete) {\r\n        allComplete = false;\r\n      }\r\n    });\r\n    return allComplete;\r\n  };\r\n\r\n  drawRoi = (ctx, roi, imgLeft, imgTop, canvasFactor) => {\r\n    const opacity = roi.isObject ? 0 : this.props.opacity;\r\n    ctx.globalAlpha = opacity / 2;\r\n    ctx.fillStyle = roi.color;\r\n    ctx.beginPath();\r\n    for (let regions of roi.regions) {\r\n      ctx.moveTo(\r\n        (regions[0][0] - imgLeft) * canvasFactor,\r\n        (regions[0][1] - imgTop) * canvasFactor\r\n      );\r\n      let left = imgLeft;\r\n      let top = imgTop;\r\n      regions.forEach(function (point) {\r\n        ctx.lineTo(\r\n          (point[0] - left) * canvasFactor,\r\n          (point[1] - top) * canvasFactor\r\n        );\r\n      });\r\n    }\r\n    this.ctx.closePath();\r\n    this.ctx.fill(\"evenodd\");\r\n    if (opacity === 0) {\r\n      ctx.strokeStyle = roi.color;\r\n    }\r\n    ctx.globalAlpha = 1;\r\n    ctx.stroke();\r\n  };\r\n\r\n  draw() {\r\n    const { roI, ome, tools, activeTool, drawLayer } = this.props;\r\n    // draw image, contour, crosshair, ... in image\r\n\r\n    this.canvas.height = this.props.canvasWidth;\r\n    this.canvas.width = this.props.canvasWidth;\r\n\r\n    // set padding (depends on zooming)\r\n    let pd = 0;\r\n    // check if new padding is still in whole image\r\n    let boInsideImage =\r\n      roI.bounds.left - this.state.pd > 0 &&\r\n      roI.bounds.right + this.state.pd < ome.sizeX &&\r\n      roI.bounds.top - this.state.pd > 0 &&\r\n      roI.bounds.bottom + this.state.pd < ome.sizeY;\r\n    if (boInsideImage) {\r\n      pd = this.state.pd;\r\n    } else {\r\n      pd = this.state.pd - this.state.zoomSpeed; // if max. zoomed out --> do not change padding\r\n    }\r\n\r\n    // set image properties (dimensions) with padding\r\n    let imgBottom = roI.bounds.bottom + pd;\r\n    let imgTop = roI.bounds.top - pd;\r\n    let imgLeft = roI.bounds.left - pd;\r\n    let imgRight = roI.bounds.right + pd;\r\n    let imgBoundWidth = roI.bounds.right - roI.bounds.left;\r\n    let imgBoundHeight = roI.bounds.bottom - roI.bounds.top;\r\n\r\n    // make bounding box to square and edge protection (that image is in whole image)\r\n    if (imgBoundWidth > imgBoundHeight) {\r\n      let d = (imgBoundWidth - imgBoundHeight) / 2;\r\n      if (imgTop - d < 0) {\r\n        // if too high\r\n        imgBottom = imgBottom + d + (d - imgTop);\r\n        imgTop = 0;\r\n      } else if (imgBottom + d > ome.sizeY - 1) {\r\n        // if too low\r\n        imgTop = imgTop - d - (d - (ome.sizeY - imgBottom));\r\n        imgBottom = ome.sizeY - 1;\r\n      } else {\r\n        imgTop = imgTop - d;\r\n        imgBottom = imgBottom + d;\r\n      }\r\n    } else if (imgBoundWidth < imgBoundHeight) {\r\n      let d = (imgBoundHeight - imgBoundWidth) / 2;\r\n      if (imgLeft - d < 0) {\r\n        // too far left\r\n        imgRight = imgRight + d + (d - imgLeft);\r\n        imgLeft = 0;\r\n      } else if (imgRight + d > ome.sizeX - 1) {\r\n        // too far right\r\n        imgLeft = imgLeft - d - (d - (ome.sizeX - imgRight));\r\n        imgRight = ome.sizeX - 1;\r\n      } else {\r\n        imgLeft = imgLeft - d;\r\n        imgRight = imgRight + d;\r\n      }\r\n    }\r\n\r\n    // calculate pyramid level to display roi\r\n    let factorPyramidLevel =\r\n      (this.props.canvasWidth * ome.sizeY) /\r\n      ((imgBottom - imgTop) * this.props.tiles.getImgHeight());\r\n    let level = Math.floor(this.getBaseLog(2, factorPyramidLevel));\r\n    if (level < 0) {\r\n      level = 0;\r\n    } else if (level > ome.maxLevel) {\r\n      level = ome.maxLevel;\r\n    }\r\n\r\n    let ctx = this.canvas.getContext(\"2d\");\r\n    this.imgs = [];\r\n    this.imgs1 = [];\r\n    // get number of tiles in calculated level\r\n    let rows = Math.pow(2, level);\r\n\r\n    // get factor for width and height\r\n    let factor_w =\r\n      (this.props.tiles.getImgWidth() * rows) / this.props.ome.sizeX;\r\n    let factor_h =\r\n      (this.props.tiles.getImgHeight() * rows) / this.props.ome.sizeY;\r\n    let xBound = imgLeft * factor_w;\r\n    let yBound = imgTop * factor_h;\r\n    let boundWidth = (imgRight - imgLeft) * factor_w;\r\n    let boundHeight = (imgBottom - imgTop) * factor_h;\r\n\r\n    // x- and y-Tile upper left\r\n    let xTile = Math.floor(xBound / this.props.tiles.getImgWidth());\r\n    let yTile = Math.floor(yBound / this.props.tiles.getImgHeight());\r\n\r\n    xTile = Math.max(xTile, 0);\r\n    yTile = Math.max(yTile, 0);\r\n\r\n    // assume 4 tiles\r\n    let rows1 = 2;\r\n    let cols1 = 2;\r\n    if (\r\n      Math.floor(xBound / this.props.tiles.getImgWidth()) ===\r\n      Math.floor((xBound + boundWidth) / this.props.tiles.getImgWidth())\r\n    ) {\r\n      // if left and right corner in same tile only one column\r\n      cols1 = 1;\r\n    }\r\n    if (\r\n      Math.floor(yBound / this.props.tiles.getImgHeight()) ===\r\n      Math.floor((yBound + boundHeight) / this.props.tiles.getImgHeight())\r\n    ) {\r\n      // if upper and lower corner in same tile one row\r\n      rows1 = 1;\r\n    }\r\n    if (xTile === Math.pow(2, level) - 1) {\r\n      cols1 = 1;\r\n    }\r\n    if (yTile === Math.pow(2, level) - 1) {\r\n      rows1 = 1;\r\n    }\r\n\r\n    // calculate and load tiles for roi depending on pyramide level\r\n    for (let x = xTile; x < xTile + cols1; x++) {\r\n      for (let y = yTile; y < yTile + rows1; y++) {\r\n        for (let i = 0; i < ome.channels.length; i++) {\r\n          let page = this.getPageForChannel(i);\r\n          if (page === -1) {\r\n            return;\r\n          }\r\n          let tileId =\r\n            page + \",\" + level + \",\" + x + \",\" + y + \",\" + this.props.fileId;\r\n          if (\r\n            (!this.props.tiles.getVisibleImage(tileId) ||\r\n              !this.props.tiles.getVisibleImage(tileId).complete ||\r\n              roI.firstTimeGallery) &&\r\n            this.props.objectToLoad.rois.includes(this.props.roI)\r\n          ) {\r\n            // if is not in cache and needs to get loaded in backend\r\n            let vImg = new Image();\r\n            vImg.src = Backend.renderRegion({\r\n              id: this.props.fileId,\r\n              page: page,\r\n              lv: level,\r\n              x: x,\r\n              y: y,\r\n            });\r\n            this.imgs.push(vImg);\r\n            this.imgs1.push([vImg, tileId]);\r\n            this.props.tiles.pushVisibleImage(vImg, tileId);\r\n          } else {\r\n            // load tile from cache\r\n            if (this.props.tiles.getVisibleImage(tileId)) {\r\n              this.imgs.push(this.props.tiles.getVisibleImage(tileId));\r\n              this.imgs1.push([\r\n                this.props.tiles.getVisibleImage(tileId),\r\n                tileId,\r\n              ]);\r\n            }\r\n          }\r\n        }\r\n      }\r\n    }\r\n\r\n    // clear canvas\r\n    ctx.clearRect(0, 0, this.props.canvasWidth, this.props.canvasWidth);\r\n    ctx.save();\r\n    ctx.setTransform(1, 0, 0, 1, 0, 0);\r\n    ctx.clearRect(0, 0, this.props.canvasWidth, this.props.canvasWidth);\r\n    ctx.restore();\r\n\r\n    // put images in canvas\r\n    for (let y = 0; y < this.imgs.length; y++) {\r\n      if (\r\n        this.imgs[y].complete &&\r\n        this.props.tiles.getColoredImage(this.imgs1[y][1])\r\n      ) {\r\n        // if image is finished loading --> draw\r\n        let channel;\r\n        let nChannels = ome.channels.length;\r\n        for (let i = 0; i < nChannels; i++) {\r\n          if (y % nChannels === i) {\r\n            channel = this.props.tiles.getHistogramConfig().channels[i];\r\n          }\r\n        }\r\n\r\n        if (channel.enabled) {\r\n          // composition should be screen for fluorescence\r\n          const compositionModeFluor = \"screen\";\r\n          ctx.globalCompositeOperation = compositionModeFluor;\r\n\r\n          // draw image with different channels\r\n          let imageForCanvas = this.props.tiles.getColoredImage(\r\n            this.imgs1[y][1]\r\n          );\r\n\r\n          // variables for destionation and source image\r\n          let sX; // source x\r\n          let sY; // source y\r\n          let sWidth; // source width\r\n          let sHeight; // source height\r\n          let x1D; // destination x\r\n          let y1D; // destination y\r\n          let wD; // destination width\r\n          let hD; // destination height\r\n          let imgWidth = this.props.tiles.getImgWidth();\r\n          let imgHeight = this.props.tiles.getImgHeight();\r\n          let fktWidth = (imgWidth * (xTile + 1) - xBound) / boundWidth;\r\n          let fktHeight = (imgHeight * (yTile + 1) - yBound) / boundHeight;\r\n\r\n          // calculate values for destination and source image (for cropping)\r\n          if (this.imgs.length === this.props.ome.channels.length) {\r\n            // if roi is in 1 tile\r\n            sX = xBound - xTile * imgWidth;\r\n            sY = yBound - yTile * imgHeight;\r\n            sWidth = boundWidth;\r\n            sHeight = boundHeight;\r\n            x1D = 0;\r\n            y1D = 0;\r\n            wD = this.props.canvasWidth;\r\n            hD = this.props.canvasWidth;\r\n          } else if (rows1 === 1 && y >= this.props.ome.channels.length) {\r\n            // if roi is in two horizontal tiles\r\n            sX = 0;\r\n            sY = yBound - yTile * imgHeight;\r\n            sWidth = boundWidth + xBound - imgWidth * (xTile + 1);\r\n            sHeight = imgHeight * (yTile + 1) - yBound;\r\n            x1D = this.props.canvasWidth * fktWidth;\r\n            y1D = 0;\r\n            wD = this.props.canvasWidth * (1 - fktWidth);\r\n            hD = this.props.canvasWidth * fktHeight;\r\n          } else if (rows1 === 1 && y < this.props.ome.channels.length) {\r\n            // if roi is in two horizontal tiles\r\n            sX = xBound - xTile * imgWidth;\r\n            sY = yBound - yTile * imgHeight;\r\n            sWidth = imgWidth * (xTile + 1) - xBound;\r\n            sHeight = imgHeight * (yTile + 1) - yBound;\r\n            x1D = 0;\r\n            y1D = 0;\r\n            wD = this.props.canvasWidth * fktWidth;\r\n            hD = this.props.canvasWidth * fktHeight;\r\n          } else if (y >= 0 && y < this.props.ome.channels.length) {\r\n            // upper left\r\n            sX = xBound - xTile * imgWidth;\r\n            sY = yBound - yTile * imgHeight;\r\n            sWidth = imgWidth * (xTile + 1) - xBound;\r\n            sHeight = imgHeight * (yTile + 1) - yBound;\r\n            x1D = 0;\r\n            y1D = 0;\r\n            wD = this.props.canvasWidth * fktWidth;\r\n            hD = this.props.canvasWidth * fktHeight;\r\n          } else if (\r\n            y >= this.props.ome.channels.length &&\r\n            y < this.props.ome.channels.length * 2\r\n          ) {\r\n            // lower left\r\n            sX = xBound - xTile * imgWidth;\r\n            sY = 0;\r\n            sWidth = imgWidth * (xTile + 1) - xBound;\r\n            sHeight = boundHeight - (imgHeight * (yTile + 1) - yBound);\r\n            x1D = 0;\r\n            y1D = this.props.canvasWidth * fktHeight;\r\n            wD = this.props.canvasWidth * fktWidth;\r\n            hD = this.props.canvasWidth * (1 - fktHeight);\r\n          } else if (\r\n            y >= this.props.ome.channels.length * 2 &&\r\n            y < this.props.ome.channels.length * 3\r\n          ) {\r\n            // upper right\r\n            sX = 0;\r\n            sY = yBound - yTile * imgHeight;\r\n            sWidth = boundWidth + xBound - imgWidth * (xTile + 1);\r\n            sHeight = imgHeight * (yTile + 1) - yBound;\r\n            x1D = this.props.canvasWidth * fktWidth;\r\n            y1D = 0;\r\n            wD = this.props.canvasWidth * (1 - fktWidth);\r\n            hD = this.props.canvasWidth * fktHeight;\r\n          } else {\r\n            // lower right\r\n            sX = 0;\r\n            sY = 0;\r\n            sWidth = boundWidth + xBound - imgWidth * (xTile + 1);\r\n            sHeight = boundHeight - (imgHeight * (yTile + 1) - yBound);\r\n            x1D = this.props.canvasWidth * fktWidth;\r\n            y1D = this.props.canvasWidth * fktHeight;\r\n            wD = this.props.canvasWidth * (1 - fktWidth);\r\n            hD = this.props.canvasWidth * (1 - fktHeight);\r\n          }\r\n\r\n          ctx.imageSmoothingEnabled = true;\r\n          if (imageForCanvas) {\r\n            // draw loaded image canvas\r\n            ctx.drawImage(\r\n              imageForCanvas,\r\n              sX,\r\n              sY,\r\n              sWidth,\r\n              sHeight,\r\n              x1D,\r\n              y1D,\r\n              wD,\r\n              hD\r\n            );\r\n          }\r\n\r\n          this.fullyLoadedCount = this.fullyLoadedCount + 1;\r\n          if (this.areAllImagesComplete(this.imgs)) {\r\n            this.props.roI.fullyLoaded = true;\r\n            this.fullyLoadedCount = 0;\r\n            if (this.props.roI === this.props.objectToLoad.roi) {\r\n              // set image/roi that should be loaded next\r\n              this.props.setObjectToLoad();\r\n            }\r\n          }\r\n          roI.firstTimeGallery = false;\r\n        }\r\n      } else if (this.props.objectToLoad.rois.includes(this.props.roI)) {\r\n        // if image is not finished loading from backend and roi is the object to load next --> load image\r\n        this.imgs[y].onload = () => {\r\n          let channel;\r\n          let nChannels = this.props.ome.channels.length;\r\n          for (let i = 0; i < nChannels; i++) {\r\n            if (y % nChannels === i) {\r\n              channel = this.props.tiles.getHistogramConfig().channels[i];\r\n            }\r\n          }\r\n\r\n          if (channel.enabled) {\r\n            // composition should be screen for fluorescence\r\n            const compositionModeFluor = \"screen\";\r\n            ctx.globalCompositeOperation = compositionModeFluor;\r\n\r\n            if (channel.color === \"#ffffff\" || channel.color === -1) {\r\n              // rgb channel\r\n              if (\r\n                this.imgs1[y] &&\r\n                !this.props.tiles.getColoredImage(this.imgs1[y][1])\r\n              ) {\r\n                let imageForCanvas = configureImage(this.imgs[y], channel);\r\n                this.props.tiles.pushColoredImages(\r\n                  imageForCanvas,\r\n                  this.imgs1[y][1]\r\n                );\r\n              }\r\n            } else {\r\n              // colored images cache\r\n              if (\r\n                this.imgs1[y] &&\r\n                !this.props.tiles.getColoredImage(this.imgs1[y][1])\r\n              ) {\r\n                let imageForCanvas = colorInImage(this.imgs[y], channel);\r\n                this.props.tiles.pushColoredImages(\r\n                  imageForCanvas,\r\n                  this.imgs1[y][1]\r\n                );\r\n              }\r\n            }\r\n          }\r\n\r\n          this.loadedCount = this.loadedCount + 1;\r\n          if (this.areAllImagesComplete(this.imgs)) {\r\n            // if all images loaded --> reset images\r\n            this.imgs = [];\r\n            this.imgs1 = [];\r\n            this.props.roI.firstTimeGallery = false;\r\n            this.loadedCount = 0;\r\n            this.props.roI.fullyLoaded = true;\r\n            this.forceUpdate();\r\n          }\r\n        };\r\n      }\r\n    }\r\n\r\n    // draw contour of roi\r\n    if (this.props.contour) {\r\n      this.ctx.globalCompositeOperation = \"source-over\";\r\n      this.ctx.strokeStyle = this.props.isBrightfield ? \"black\" : \"white\";\r\n      ctx.lineWidth = 2;\r\n      let canvasFactor = this.props.canvasWidth / (imgBottom - imgTop);\r\n      this.canvasFactor1 = canvasFactor;\r\n      this.left = imgLeft;\r\n      this.top = imgTop;\r\n\r\n      if (\r\n        !tools[activeTool] ||\r\n        (tools[activeTool] &&\r\n          tools[activeTool].name !== \"Pen\" &&\r\n          tools[activeTool].name !== \"Region\" &&\r\n          tools[activeTool].name !== \"Rectangle\" &&\r\n          tools[activeTool].name !== \"Ellipse\") ||\r\n        !tools[activeTool].layer\r\n      ) {\r\n        // no drawing tool enabled\r\n        // only draw main roi\r\n        this.drawRoi(ctx, roI, imgLeft, imgTop, canvasFactor);\r\n        ctx.beginPath();\r\n      } else {\r\n        // drawing tool enabled\r\n        if (\r\n          tools[activeTool].layer.regionRois[this.props.index] &&\r\n          !this.mouseOnCanvas\r\n        ) {\r\n          // drawing tool enabled but mouse not on canvas --> only draw main roi\r\n          let r = tools[activeTool].layer.regionRois.filter(\r\n            (element) => element.bounds === roI.bounds\r\n          )[0];\r\n          if (r) {\r\n            this.r = r;\r\n            // only draw main roi\r\n            this.drawRoi(ctx, r, imgLeft, imgTop, canvasFactor);\r\n          }\r\n        }\r\n\r\n        if (this.mouseOnCanvas) {\r\n          // draw other contours if mouse is on canvas and tool is activated\r\n          // only draw contours that are visible in image (use tree)\r\n          this.visibleRegions = [];\r\n          this.visibleRegions = this.findVisibleRois(this.state.pd); // also icludes main roi\r\n\r\n          // draw visible regions in canvas\r\n          for (let i = 0; i < this.visibleRegions.length; i++) {\r\n            this.drawRoi(\r\n              ctx,\r\n              this.visibleRegions[i].roi,\r\n              imgLeft,\r\n              imgTop,\r\n              canvasFactor\r\n            );\r\n          }\r\n\r\n          // draw drawlayer\r\n          if (drawLayer.regionRois.length > 0) {\r\n            this.drawRoi(\r\n              ctx,\r\n              drawLayer.regionRois[0],\r\n              imgLeft,\r\n              imgTop,\r\n              canvasFactor\r\n            );\r\n          }\r\n        }\r\n      }\r\n    }\r\n\r\n    // draw custom mouse cursor for pen tool\r\n    if (tools[activeTool] && this.mousepos.x !== 0) {\r\n      tools[activeTool].drawCustomCursor(\r\n        ctx,\r\n        this.mousepos,\r\n        this.canvasFactor1,\r\n        true\r\n      );\r\n    }\r\n\r\n    // draw crosshair\r\n    // clear overlayCanvas\r\n    let ctxOv = null;\r\n    if (this.canvasOverlay !== null && this.canvasOverlay) {\r\n      ctxOv = this.canvasOverlay.getContext(\"2d\");\r\n      this.canvasOverlay.height = this.props.canvasWidth;\r\n      this.canvasOverlay.width = this.props.canvasWidth;\r\n      ctxOv.clearRect(0, 0, this.props.canvasWidth, this.props.canvasWidth);\r\n      ctxOv.save();\r\n      ctxOv.setTransform(1, 0, 0, 1, 0, 0);\r\n      ctxOv.clearRect(0, 0, this.props.canvasWidth, this.props.canvasWidth);\r\n      ctxOv.restore();\r\n    }\r\n    if (this.props.drawCrosshair) {\r\n      ctxOv.lineWidth = this.props.crosshairLineWidth;\r\n      let lineLength = (this.props.canvasWidth / 2) * 0.9;\r\n      let linePostion = this.props.canvasWidth / 2;\r\n      let widthHeight = this.props.canvasWidth;\r\n\r\n      // horizontal line left\r\n      ctxOv.beginPath();\r\n      ctxOv.moveTo(4, this.props.canvasWidth / 2);\r\n      ctxOv.lineTo(lineLength, linePostion);\r\n      ctxOv.closePath();\r\n      ctxOv.strokeStyle = this.props.crosshairColor;\r\n      ctxOv.globalAlpha = this.props.crosshairOpacity;\r\n      ctxOv.stroke();\r\n\r\n      // horizontal line right\r\n      ctxOv.beginPath();\r\n      ctxOv.moveTo(widthHeight - 4, linePostion);\r\n      ctxOv.lineTo(widthHeight - lineLength, linePostion);\r\n      ctxOv.closePath();\r\n      ctxOv.strokeStyle = this.props.crosshairColor;\r\n      ctxOv.globalAlpha = this.props.crosshairOpacity;\r\n      ctxOv.stroke();\r\n\r\n      // vertical line top\r\n      ctxOv.beginPath();\r\n      ctxOv.moveTo(linePostion, 4);\r\n      ctxOv.lineTo(linePostion, lineLength);\r\n      ctxOv.closePath();\r\n      ctxOv.strokeStyle = this.props.crosshairColor;\r\n      ctxOv.globalAlpha = this.props.crosshairOpacity;\r\n      ctxOv.stroke();\r\n\r\n      // vertical line bottom\r\n      ctxOv.beginPath();\r\n      ctxOv.moveTo(linePostion, widthHeight - 4);\r\n      ctxOv.lineTo(linePostion, widthHeight - lineLength);\r\n      ctxOv.closePath();\r\n      ctxOv.strokeStyle = this.props.crosshairColor;\r\n      ctxOv.globalAlpha = this.props.crosshairOpacity;\r\n      ctxOv.stroke();\r\n    }\r\n  }\r\n\r\n  getRoiStructureId = (roi) => {\r\n    const { structures, selectedLayer } = this.props;\r\n    // return structureId of roi\r\n    if (roi.structureId === 0 && roi.subtypeName === \"\") {\r\n      // run job parent elements\r\n      return structures[selectedLayer].id;\r\n    } else if (roi.structureId === 0) {\r\n      // for old projects with no ids or after run job (structureId === 0)\r\n      let idx = structures.findIndex(\r\n        (element) =>\r\n          element.color === roi.color && element.label === roi.subtypeName\r\n      );\r\n      return structures[idx].id;\r\n    } else {\r\n      // if new project --> just return structureId property\r\n      return roi.structureId;\r\n    }\r\n  };\r\n\r\n  getClassificationStructure = (id) => {\r\n    const { structures } = this.props;\r\n    // return structure for classification with given id\r\n    return structures.filter((element) => element.id === id)[0];\r\n  };\r\n\r\n  handleCanvasClick = (e) => {\r\n    const {\r\n      roI,\r\n      tools,\r\n      structures,\r\n      selectedLayer,\r\n      roiLayers,\r\n      activeTool,\r\n      automaticTraining,\r\n      classificationId,\r\n      project,\r\n    } = this.props;\r\n    // classify and select roi\r\n\r\n    // return if roi is not loaded --> return\r\n    if (this.props.roI.firstTimeGallery) {\r\n      if (!this.props.roI.aiAnnotated) {\r\n        return;\r\n      }\r\n    }\r\n\r\n    if (!project.type.includes(\"Histo\") && selectedLayer === 0) return; //dont allow subtype marking for baseroi\r\n\r\n    // only classify and select roi if no drawing tool is activated\r\n    if (\r\n      !tools[activeTool] ||\r\n      (tools[activeTool] &&\r\n        tools[activeTool].name !== \"Pen\" &&\r\n        tools[activeTool].name !== \"Region\" &&\r\n        tools[activeTool].name !== \"Rectangle\" &&\r\n        tools[activeTool].name !== \"Ellipse\")\r\n    ) {\r\n      // set clicked roi to selected = true\r\n      roiLayers[selectedLayer].layer.regionRois.forEach((element) => {\r\n        element.selected = false;\r\n        element.selectedWithKey = false;\r\n      });\r\n      this.props.roI.selected = true;\r\n      this.props.roI.selectedWithKey = false;\r\n      if (this.props.selectedWithKey) {\r\n        // set false --> no automatic scrolling\r\n        this.props.setSelectedWithKey(false);\r\n      }\r\n\r\n      // return here in histo-point-counting module --> only select but not classify\r\n      if (project.type.includes(\"HistoPointCounting\")) {\r\n        this.props.updateGallery();\r\n        return;\r\n      }\r\n\r\n      // classify roi\r\n      let roiWasSubtype = roI.isSubtype && !roI.aiAnnotated;\r\n      let bufferRoiId = this.getRoiStructureId(roI);\r\n\r\n      let classificationStructure;\r\n      if (e.nativeEvent.which === 3) {\r\n        // right click\r\n        classificationStructure = this.getClassificationStructure(\r\n          classificationId[2]\r\n        );\r\n      }\r\n      if (e.nativeEvent.which === 1) {\r\n        // left click\r\n        classificationStructure = this.getClassificationStructure(\r\n          classificationId[1]\r\n        );\r\n      }\r\n\r\n      if (typeof classificationStructure === \"undefined\") return;\r\n\r\n      // set properties\r\n      roI.color = classificationStructure.color;\r\n      roI.isSubtype = classificationStructure.classificationSubtype\r\n        ? true\r\n        : false;\r\n      roI.isAnnotated = classificationStructure.classificationSubtype\r\n        ? true\r\n        : false;\r\n      roI.isLabeled = classificationStructure.classificationSubtype\r\n        ? true\r\n        : false;\r\n      roI.subtypeName = classificationStructure.label;\r\n      roI.structureId = classificationStructure.id;\r\n      roI.isSelObj = false;\r\n      roI.aiAnnotated = false;\r\n\r\n      // increase annotationCount\r\n      if (\r\n        automaticTraining &&\r\n        !structures[selectedLayer].classificationSubtype\r\n      ) {\r\n        if (roI.isSubtype && !roiWasSubtype) {\r\n          // if classify unlabeled to labeled\r\n          this.props.tiles.setStrAnnoCount(this.getRoiStructureId(roI), 1);\r\n        } else if (roI.isSubtype && roiWasSubtype) {\r\n          // if classify labeled to labeled\r\n          this.props.tiles.setStrAnnoCount(this.getRoiStructureId(roI), 1);\r\n          this.props.tiles.setStrAnnoCount(bufferRoiId, -1);\r\n        } else if (roiWasSubtype) {\r\n          // if classify labeled to unlabeled\r\n          this.props.tiles.setStrAnnoCount(bufferRoiId, -1);\r\n        }\r\n      }\r\n\r\n      // check if all images in scene are labeled\r\n      //this.allImgsAnnotated();\r\n\r\n      // check if start training automatically\r\n      let childs = this.findChilds(structures[selectedLayer]);\r\n      let structureId = structures[selectedLayer].id;\r\n      let annotations =\r\n        this.getNuberChildRois(childs) -\r\n        this.props.tiles.getStrAnnoCountElement(structureId);\r\n      if (\r\n        annotations >= this.props.startData &&\r\n        automaticTraining &&\r\n        !this.props.alruns\r\n      ) {\r\n        let enoughAnnos = this.enoughAnnotations(childs);\r\n        if (enoughAnnos) {\r\n          this.props.tiles.setAnnotationCount(0);\r\n          this.props.tiles.setParentAnnoCount(\r\n            structures[selectedLayer].id,\r\n            annotations\r\n          );\r\n          this.props.startAutomaticTraining();\r\n        } else {\r\n          // give warning if too less annotations\r\n          this.props.giveWarning();\r\n        }\r\n      }\r\n      // update gallery\r\n      this.props.updateGallery();\r\n    }\r\n  };\r\n\r\n  allImgsAnnotated = () => {\r\n    const { selectedLayer, roiLayers } = this.props;\r\n    // check if all images in scene are labeled\r\n    let allImagesLabeled = roiLayers[selectedLayer].layer.regionRois.filter(\r\n      (element) => !element.isLabeled\r\n    );\r\n    if (allImagesLabeled.length === 0) {\r\n      // set property that scene is fully annotated\r\n      this.props.setFUllyAnnotated();\r\n    } else if (allImagesLabeled.length > 0) {\r\n      // set property that scene is annotated\r\n      this.props.setAnnotated();\r\n    }\r\n  };\r\n\r\n  getNuberChildRois = (childs) => {\r\n    // get number of rois for each child\r\n    let n = 0;\r\n    childs.forEach((element) => {\r\n      n = n + this.props.tiles.getStrAnnoCountElement(element.id);\r\n    });\r\n    return n;\r\n  };\r\n\r\n  findChilds = (structure) => {\r\n    const { structures } = this.props;\r\n    // return all direct classificationsubtypes\r\n    return structures.filter(\r\n      (element) =>\r\n        element.subtypeLevel === structure.subtypeLevel + 1 &&\r\n        element.parentId === structure.id &&\r\n        element.classificationSubtype\r\n    );\r\n  };\r\n\r\n  enoughAnnotations = (childs) => {\r\n    // check if enough annotations for training of dl model (at least one class with 5 annotations and one other class with 1 annotation)\r\n    let minFive = false;\r\n    let twoAnnotated = 0;\r\n    childs.forEach((element) => {\r\n      // check if minimum of five in one class\r\n      if (this.props.tiles.getStrAnnoCountElement(element.id) >= 5) {\r\n        minFive = true;\r\n      }\r\n      // check if two classes with at least one element\r\n      if (this.props.tiles.getStrAnnoCountElement(element.id) >= 1) {\r\n        twoAnnotated = twoAnnotated + 1;\r\n      }\r\n    });\r\n\r\n    // if one class with at least five and one other class with at least one annotation --> enough annotations for training\r\n    let enough = false;\r\n    if (minFive && twoAnnotated >= 2) {\r\n      enough = true;\r\n    }\r\n    return enough;\r\n  };\r\n\r\n  handleCanvasMouseDown = (e) => {\r\n    const { roI, tools, activeTool, project } = this.props;\r\n    // no mouse down if roi is still loading\r\n    if (this.props.roI.firstTimeGallery) {\r\n      return;\r\n    }\r\n    // set property that mouse is down\r\n    this.props.tiles.setIsMousedown(true);\r\n\r\n    if (this.drawingEnabled) {\r\n      // get position, ... for drawing event of tool\r\n      var rect = this.canvas.getBoundingClientRect();\r\n      var mouseX = e.clientX - rect.left;\r\n      var mouseY = e.clientY - rect.top;\r\n      let p = {\r\n        x: mouseX / this.canvasFactor1 + this.left,\r\n        y: mouseY / this.canvasFactor1 + this.top,\r\n      };\r\n      if (tools[activeTool]) {\r\n        tools[activeTool].mouse({\r\n          event: e,\r\n          p: p,\r\n          color: roI.color,\r\n          subtype: roI.isSubtype,\r\n          name: roI.subtypeName,\r\n        });\r\n      }\r\n      // update\r\n      this.forceUpdate();\r\n    }\r\n    // mouse wheel click not possible in point counting module\r\n    if (!project.type.includes(\"HistoPointCounting\")) {\r\n      // zoom to roi in viewer when mouse wheel click\r\n      if (e.nativeEvent.which === 2) {\r\n        this.props.gallery(\r\n          false,\r\n          roI.bounds.left,\r\n          roI.bounds.right,\r\n          roI.bounds.top,\r\n          roI.bounds.bottom\r\n        );\r\n      }\r\n    }\r\n  };\r\n\r\n  handleMouseMove = (e) => {\r\n    const { roI, tools, activeTool } = this.props;\r\n    // no mouse move if roi is still loading\r\n    if (roI.firstTimeGallery) {\r\n      return;\r\n    }\r\n    if (this.drawingEnabled) {\r\n      // set property that mouse is on canvas\r\n      this.mouseOnCanvas = true;\r\n      // get position, ... for drawing event of tool\r\n      var rect = this.canvas.getBoundingClientRect();\r\n      var mouseX = e.clientX - rect.left;\r\n      var mouseY = e.clientY - rect.top;\r\n      let p = {\r\n        x: mouseX / this.canvasFactor1 + this.left,\r\n        y: mouseY / this.canvasFactor1 + this.top,\r\n      };\r\n      if (\r\n        (tools[activeTool] && tools.region.points.length !== 0) ||\r\n        (tools[activeTool] && tools[activeTool].name === \"Pen\") ||\r\n        (tools[activeTool] && tools[activeTool].name === \"Rectangle\") ||\r\n        (tools[activeTool] && tools[activeTool].name === \"Ellipse\")\r\n      ) {\r\n        tools[activeTool].mouse({\r\n          event: e,\r\n          p: p,\r\n          color: roI.color,\r\n          subtype: roI.isSubtype,\r\n          name: roI.subtypeName,\r\n        });\r\n        // update\r\n        this.forceUpdate();\r\n      }\r\n      // update mouse position\r\n      this.mousepos.x = e.clientX - rect.left;\r\n      this.mousepos.y = e.clientY - rect.top;\r\n    }\r\n  };\r\n\r\n  handleMouseUp = (e) => {\r\n    const { roI, tools, activeTool, roiLayers, selectedLayer, structures } =\r\n      this.props;\r\n    // no mouse up if roi is still loading\r\n    if (roI.firstTimeGallery) {\r\n      return;\r\n    }\r\n    // set property that mouse is not down anymore\r\n    this.props.tiles.setIsMousedown(false);\r\n\r\n    if (\r\n      this.drawingEnabled &&\r\n      tools[activeTool] &&\r\n      (tools[activeTool].name === \"Pen\" ||\r\n        tools[activeTool].name === \"Region\" ||\r\n        tools[activeTool].name === \"Rectangle\" ||\r\n        tools[activeTool].name === \"Ellipse\")\r\n    ) {\r\n      // get position, ... for drawing event of tool\r\n      var rect = this.canvas.getBoundingClientRect();\r\n      var mouseX = e.clientX - rect.left;\r\n      var mouseY = e.clientY - rect.top;\r\n      let p = {\r\n        x: mouseX / this.canvasFactor1 + this.left,\r\n        y: mouseY / this.canvasFactor1 + this.top,\r\n      };\r\n\r\n      // get position of roi --> insert if at correct position after update\r\n      // get layer which contains roi\r\n      let parentLayer = getParentIndexLayer(\r\n        structures[selectedLayer],\r\n        structures\r\n      );\r\n      // get position of roi in roilayer\r\n      let posInRoiLayer = roiLayers[parentLayer].layer.regionRois.findIndex(\r\n        (roi) => roi === roI\r\n      );\r\n      if (posInRoiLayer !== -1) {\r\n        this.positionInLayer = posInRoiLayer;\r\n      }\r\n      if (tools[activeTool]) {\r\n        tools[activeTool].mouse({\r\n          event: e,\r\n          p: p,\r\n          color: roI.color,\r\n          subtype: roI.isSubtype,\r\n          name: roI.subtypeName,\r\n          positionInRoiLayer: this.positionInLayer,\r\n          fullyLoaded: true,\r\n        });\r\n      }\r\n      // reset object to load --> reload after drawing\r\n      this.props.setObjectToLoad(false, true);\r\n      // update\r\n      this.forceUpdate();\r\n    }\r\n  };\r\n\r\n  handleMouseLeave = () => {\r\n    const { roI, tools, activeTool } = this.props;\r\n    // no mouse leave if roi is still loading\r\n    if (roI.firstTimeGallery) {\r\n      return;\r\n    }\r\n    // set property that mouse is not on image anymore\r\n    this.props.tiles.setIsOnImage(false);\r\n\r\n    // if mouse is not down when leaving image --> end drawing mode\r\n    if (!this.props.tiles.getIsMousedown()) {\r\n      this.drawingEnabled = false;\r\n    }\r\n\r\n    // reset mouseposition\r\n    this.mousepos.x = 0;\r\n    this.mousepos.y = 0;\r\n    this.mouseOnCanvas = false;\r\n    if (\r\n      tools[activeTool] &&\r\n      (tools[activeTool].name === \"Pen\" ||\r\n        tools[activeTool].name === \"Region\" ||\r\n        tools[activeTool].name === \"Rectangle\" ||\r\n        tools[activeTool].name === \"Ellipse\")\r\n    ) {\r\n      // update gallery\r\n      this.props.updateGallery();\r\n    }\r\n    // update\r\n    this.forceUpdate();\r\n  };\r\n\r\n  handleMouseEnter = () => {\r\n    const { roI, roiLayers, selectedLayer } = this.props;\r\n    if (!this.props.tiles.getIsMousedown()) {\r\n      // if mouse is not down when entering image --> start drawing mode\r\n      this.drawingEnabled = true;\r\n      // set position and props of roi in context --> to fix stop drawing outside of image\r\n      this.props.tiles.setRoiProps(this.props.roI);\r\n      let posInRoiLayer = roiLayers[selectedLayer].layer.regionRois.findIndex(\r\n        (roi) => roi === roI\r\n      );\r\n      this.props.tiles.setPositionRoi(posInRoiLayer);\r\n    } else {\r\n      // if mouse is already down when entering image --> do not start drawing mode becaus drawing is enabled on other image\r\n      this.props.tiles.setIsInOtherImage(true);\r\n    }\r\n    // set property that mouse is on image\r\n    this.props.tiles.setIsOnImage(true);\r\n  };\r\n\r\n  mousewheel = (event) => {\r\n    const { roI, tools, activeTool, ome } = this.props;\r\n    // only zoom if drawing / tool is activated\r\n    if (\r\n      tools[activeTool] &&\r\n      (tools[activeTool].name === \"Pen\" ||\r\n        tools[activeTool].name === \"Region\" ||\r\n        tools[activeTool].name === \"Rectangle\" ||\r\n        tools[activeTool].name === \"Ellipse\")\r\n    ) {\r\n      // check if zooming would result in zoom outside of whole image\r\n      let insideImage =\r\n        roI.bounds.left - this.state.pd > 0 &&\r\n        roI.bounds.right + this.state.pd < ome.sizeX &&\r\n        roI.bounds.top - this.state.pd > 0 &&\r\n        roI.bounds.bottom + this.state.pd < ome.sizeY;\r\n\r\n      if (insideImage) {\r\n        if (event.deltaY < 0) {\r\n          // zoom in if possible\r\n          if (this.state.pd >= this.state.zoomSpeed) {\r\n            this.setState({ pd: this.state.pd - this.state.zoomSpeed });\r\n          } else {\r\n            this.setState({ pd: 0 });\r\n          }\r\n        } else {\r\n          // zoom out\r\n          this.setState({ pd: this.state.pd + this.state.zoomSpeed });\r\n        }\r\n      } else {\r\n        if (event.deltaY < 0) {\r\n          // zoom in if possible\r\n          if (this.state.pd >= this.state.zoomSpeed) {\r\n            this.setState({ pd: this.state.pd - this.state.zoomSpeed });\r\n          } else {\r\n            this.setState({ pd: 0 });\r\n          }\r\n        }\r\n      }\r\n\r\n      // increase zoomspeed by 10%\r\n      let imgBoundWidth =\r\n        this.props.roI.bounds.right - this.props.roI.bounds.left;\r\n      this.setState({ zoomSpeed: (imgBoundWidth + this.state.pd * 2) * 0.1 }); // 10%\r\n    } else {\r\n      // increase / decrease z level\r\n      if (this.props.showZStackBar) {\r\n        this.onZStep(event.deltaY < 0 ? 1 : -1);\r\n      }\r\n    }\r\n\r\n    // prevent other scroll actions if there is a zstack\r\n    let actTool =\r\n      tools[activeTool] &&\r\n      (tools[activeTool].name === \"Pen\" ||\r\n        tools[activeTool].name === \"Region\" ||\r\n        tools[activeTool].name === \"Rectangle\" ||\r\n        tools[activeTool].name === \"Ellipse\");\r\n    if (this.props.showZStackBar || actTool) {\r\n      this.props.roI.firstTimeGallery = true;\r\n      event.preventDefault();\r\n      this.forceUpdate();\r\n    }\r\n  };\r\n\r\n  getBaseLog(x, y) {\r\n    return Math.log(y) / Math.log(x);\r\n  }\r\n\r\n  onZStep(deltaZ) {\r\n    // change z level for roi\r\n    let newZ = this.props.roI.z + deltaZ;\r\n    if (newZ < 0) newZ = 0;\r\n    if (newZ > this.props.ome.sizeZ - 1) newZ = this.props.ome.sizeZ - 1;\r\n    if (newZ !== this.props.roI.z) {\r\n      this.props.roI.firstTimeGallery = true;\r\n      this.props.roI.fullyLoaded = false;\r\n      this.props.roI.z = newZ;\r\n    }\r\n    this.forceUpdate();\r\n  }\r\n\r\n  render() {\r\n    const { classes, ome, tools, activeTool, roI, isBrightfield } = this.props;\r\n\r\n    // do not show z-stack bar in upper left while drawing\r\n    const drawMode =\r\n      tools[activeTool] &&\r\n      (tools[activeTool].name === \"Pen\" ||\r\n        tools[activeTool].name === \"Region\" ||\r\n        tools[activeTool].name === \"Rectangle\" ||\r\n        tools[activeTool].name === \"Ellipse\");\r\n\r\n    let pixelSize = ome.physicalSizeX / Math.pow(10, -6);\r\n    let unit = ome.physicalSizeXUnit;\r\n\r\n    return (\r\n      <div ref={(c) => (this.root = c)}>\r\n        <Tooltip\r\n          disableInteractive\r\n          title={\r\n            \"Width: \" +\r\n            Math.round((roI.bounds.right - roI.bounds.left) * pixelSize) +\r\n            unit +\r\n            \"    Height: \" +\r\n            Math.round((roI.bounds.bottom - roI.bounds.top) * pixelSize) +\r\n            unit +\r\n            \"    Area: \" +\r\n            Math.round(\r\n              (roI.bounds.bottom - roI.bounds.top) *\r\n                (roI.bounds.right - roI.bounds.left) *\r\n                Math.pow(pixelSize, 2)\r\n            ) +\r\n            unit +\r\n            \"²\"\r\n          }\r\n        >\r\n          <div>\r\n            <div style={{ position: \"relative\" }}>\r\n              <div\r\n                style={{\r\n                  position: \"absolute\",\r\n                  top: 0,\r\n                  left: 0,\r\n                  zIndex: 10,\r\n                  display: this.props.roI.fullyLoaded ? \"none\" : \"block\",\r\n                  height: this.props.canvasWidthString,\r\n                  width: this.props.canvasWidthString,\r\n                  background: \"transparent\",\r\n                  textAlign: \"center\",\r\n                  lineHeight: this.props.canvasWidthString,\r\n                }}\r\n              >\r\n                <CircularProgress />\r\n              </div>\r\n              <canvas\r\n                style={{\r\n                  height: this.props.canvasWidthString,\r\n                  width: this.props.canvasWidthString,\r\n                  border: roI.selected\r\n                    ? \"4px dashed \" + roI.color\r\n                    : \"4px solid \" + roI.color,\r\n                  backgroundColor:\r\n                    roI.selected && isBrightfield ? \"#ffffff\" : \"#000000\",\r\n                }}\r\n                ref={(c) => (this.canvas = c)}\r\n                className={classes.canvas}\r\n                onClick={this.handleCanvasClick}\r\n                onMouseDown={this.handleCanvasMouseDown}\r\n                onContextMenu={(e) => {\r\n                  this.handleCanvasClick(e);\r\n                  e.preventDefault();\r\n                }}\r\n                onMouseMove={this.handleMouseMove}\r\n                onMouseUp={this.handleMouseUp}\r\n                onMouseLeave={this.handleMouseLeave}\r\n                onMouseEnter={(e) => {\r\n                  this.handleMouseEnter(e);\r\n                }}\r\n              />\r\n              {this.props.drawCrosshair && (\r\n                <canvas\r\n                  style={{\r\n                    height: this.props.canvasWidthString,\r\n                    width: this.props.canvasWidthString,\r\n                    position: \"absolute\",\r\n                    top: 0,\r\n                    left: 0,\r\n                    zIndex: 5,\r\n                    pointerEvents: \"none\",\r\n                  }}\r\n                  ref={(c) => (this.canvasOverlay = c)}\r\n                />\r\n              )}\r\n            </div>\r\n            {ome.sizeZ > 1 && !drawMode && (\r\n              <div className={classes.zBar} style={{ opacity: 1 }}>\r\n                <FontAwesomeIcon\r\n                  className={classes.zStackIcon}\r\n                  icon={faLayerGroup}\r\n                  color=\"inherit\"\r\n                />\r\n                <Tooltip disableInteractive title=\"Z-Stack up\">\r\n                  <IconButton\r\n                    className={classes.zStepUp}\r\n                    onClick={() => this.onZStep(1)}\r\n                    size=\"large\"\r\n                  >\r\n                    <ArrowDropUp color=\"inherit\" />\r\n                  </IconButton>\r\n                </Tooltip>\r\n                <span className={classes.zIndex}>{this.props.roI.z}</span>\r\n                <Tooltip disableInteractive title=\"Z-Stack down\">\r\n                  <IconButton\r\n                    className={classes.zStepDown}\r\n                    onClick={() => this.onZStep(-1)}\r\n                    size=\"large\"\r\n                  >\r\n                    <ArrowDropDown color=\"inherit\" />\r\n                  </IconButton>\r\n                </Tooltip>\r\n              </div>\r\n            )}\r\n          </div>\r\n        </Tooltip>\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\n// define the component's interface\r\nCroppedImage.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  componentRef: PropTypes.func,\r\n  onRefresh: PropTypes.func,\r\n  ome: PropTypes.object,\r\n  histogramConfig: PropTypes.object,\r\n  visibleImage: PropTypes.array,\r\n  coloredImages: PropTypes.array,\r\n  roI: PropTypes.object,\r\n  structures: PropTypes.array,\r\n  selectedLayer: PropTypes.number,\r\n  canvasWidth: PropTypes.number,\r\n  canvasWidthString: PropTypes.string,\r\n  gallery: PropTypes.func,\r\n  contour: PropTypes.bool,\r\n  activeTool: PropTypes.string,\r\n  tools: PropTypes.array,\r\n  fileId: PropTypes.string,\r\n  index: PropTypes.number,\r\n  indexOffset: PropTypes.number,\r\n  page: PropTypes.number,\r\n  roiLayers: PropTypes.array,\r\n  fromAI: PropTypes.bool,\r\n  drawLayer: PropTypes.object,\r\n  updateGallery: PropTypes.func,\r\n  startData: PropTypes.number,\r\n  alruns: PropTypes.bool,\r\n  setAlruns: PropTypes.func,\r\n  globalZ: PropTypes.number,\r\n  z: PropTypes.number,\r\n  t: PropTypes.number,\r\n  tiles: PropTypes.object,\r\n  opacity: PropTypes.number,\r\n  selectedWithKey: PropTypes.bool,\r\n  scroll: PropTypes.func,\r\n  objectToLoad: PropTypes.object,\r\n  setObjectToLoad: PropTypes.func,\r\n  isBrightfield: PropTypes.bool,\r\n  drawCrosshair: PropTypes.bool,\r\n  crosshairLineWidth: PropTypes.number,\r\n  crosshairColor: PropTypes.string,\r\n  crosshairOpacity: PropTypes.number,\r\n  automaticTraining: PropTypes.bool,\r\n  classificationId: PropTypes.array,\r\n  project: PropTypes.object,\r\n  setSelectedWithKey: PropTypes.func,\r\n  startAutomaticTraining: PropTypes.func,\r\n  giveWarning: PropTypes.func,\r\n  setFUllyAnnotated: PropTypes.func,\r\n  setAnnotated: PropTypes.func,\r\n  showZStackBar: PropTypes.bool,\r\n};\r\n\r\nexport default withTiles(withTheme(withStyles(styles)(CroppedImage)));\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\nimport withTheme from \"@mui/styles/withTheme\";\r\n\r\nimport Backend from \"../../common/utils/Backend\";\r\n\r\nconst styles = {};\r\n\r\nclass SceneImage extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n\r\n    this.state = {};\r\n  }\r\n\r\n  componentDidMount = () => {};\r\n\r\n  componentDidUpdate() {\r\n    const { file, scroll, selectedWithKey, galleryMounted } = this.props;\r\n    // if file is selected scroll to top\r\n    if (file.selectedInGallery && (selectedWithKey || !galleryMounted)) {\r\n      scroll(this.image.getBoundingClientRect().top);\r\n    }\r\n  }\r\n\r\n  handleImageClick = (e) => {\r\n    const { classificationId, files, file } = this.props;\r\n\r\n    if (e.nativeEvent.which === 3) {\r\n      // right click\r\n      file.classId = classificationId[2];\r\n    }\r\n    if (e.nativeEvent.which === 1) {\r\n      // left click\r\n      file.classId = classificationId[1];\r\n    }\r\n\r\n    // make file selectedIngallery true and other files false\r\n    files.forEach((f) => {\r\n      f.selectedInGallery = false;\r\n    });\r\n    file.selectedInGallery = true;\r\n    this.props.setSelectedWithKey(false);\r\n\r\n    this.props.updateGallery();\r\n  };\r\n\r\n  getColorFromId = (classId) => {\r\n    const { structures } = this.props;\r\n    return structures.find((element) => element.id == classId).color;\r\n  };\r\n\r\n  getParentColor = () => {\r\n    const { structures, selectedLayer } = this.props;\r\n    return structures[selectedLayer].color;\r\n  };\r\n\r\n  render() {\r\n    const { file, showFileNames } = this.props;\r\n\r\n    return (\r\n      <div\r\n        style={{\r\n          border: file.classId\r\n            ? file.selectedInGallery\r\n              ? \"4px dashed \" + this.getColorFromId(file.classId)\r\n              : \"4px solid \" + this.getColorFromId(file.classId)\r\n            : file.selectedInGallery\r\n            ? \"4px dashed \" + this.getParentColor()\r\n            : \"4px solid \" + this.getParentColor(),\r\n          width: \"100%\",\r\n          display: \"grid\",\r\n          gridTemplateRows: \"auto 1fr\",\r\n        }}\r\n      >\r\n        <div\r\n          style={{\r\n            borderBottom: file.classId\r\n              ? showFileNames\r\n                ? \"2px solid \" + this.getColorFromId(file.classId)\r\n                : \"\"\r\n              : showFileNames\r\n              ? \"2px solid \" + this.getParentColor()\r\n              : \"\",\r\n          }}\r\n        >\r\n          {showFileNames ? file.fileName : \"\"}\r\n        </div>\r\n        <img\r\n          style={{\r\n            width: \"100%\",\r\n            objectFit: \"contain\",\r\n          }}\r\n          ref={(i) => (this.image = i)}\r\n          src={Backend.renderThumbnail(file.id)}\r\n          alt=\"\"\r\n          onClick={this.handleImageClick}\r\n          onContextMenu={(e) => {\r\n            this.handleImageClick(e);\r\n            e.preventDefault();\r\n          }}\r\n        />\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\n// define the component's interface\r\nSceneImage.propTypes = {\r\n  file: PropTypes.object,\r\n  structures: PropTypes.array,\r\n  selectedLayer: PropTypes.number,\r\n  imageSize: PropTypes.number,\r\n  classificationId: PropTypes.array,\r\n  scroll: PropTypes.func,\r\n  files: PropTypes.array,\r\n  updateGallery: PropTypes.func,\r\n  setSelectedWithKey: PropTypes.func,\r\n  selectedWithKey: PropTypes.bool,\r\n  showFileNames: PropTypes.bool,\r\n  galleryMounted: PropTypes.bool,\r\n};\r\n\r\nexport default withTheme(withStyles(styles)(SceneImage));\r\n","import React, { Component } from \"react\";\r\n\r\nimport PropTypes from \"prop-types\";\r\nimport { withTiles } from \"../contexts/TilesContext\";\r\n\r\nclass AccuracyGraph extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n\r\n    this.state = {};\r\n  }\r\n\r\n  componentDidMount() {\r\n    // draw graph with accuracy of single training iterations\r\n    // draw horizontal lines with accuracy values (y-axis)\r\n    const max = 255;\r\n    let ctx = this.canvas.getContext(\"2d\");\r\n    let w = this.canvas.width;\r\n    let h = this.canvas.height;\r\n    ctx.clearRect(0, 0, w, h);\r\n    ctx.beginPath();\r\n    let step = (50 * w) / max;\r\n    ctx.font = \"10px Arial\";\r\n    ctx.fillStyle = \"#ddd\";\r\n    step = h / 5;\r\n    for (let s = step, i = 1; s < h; s += step, i++) {\r\n      ctx.moveTo(0, s);\r\n      ctx.lineTo(w, s);\r\n      ctx.fillText(100 - i * 20, 2, s - 2);\r\n    }\r\n    ctx.strokeStyle = \"#ddd\";\r\n    ctx.closePath();\r\n    ctx.stroke();\r\n\r\n    // draw graph with accuracy points from training iterations\r\n    if (this.props.tiles.getGraphAcc()[0]) {\r\n      let ctx = this.canvas.getContext(\"2d\");\r\n\r\n      let height = this.canvas.height;\r\n      let y = this.props.tiles.getGraphAcc()[0];\r\n      let factor = height / 100;\r\n\r\n      ctx.beginPath();\r\n      ctx.moveTo(0, parseInt(-y * factor + height, 10));\r\n\r\n      let arr = [];\r\n      if (this.props.tiles.getGraphAcc().length <= 10) {\r\n        arr = this.props.tiles.getGraphAcc();\r\n      } else {\r\n        let start = this.props.tiles.getGraphAcc().length - 10;\r\n        arr = this.props.tiles.getGraphAcc().slice(start - 1);\r\n      }\r\n\r\n      // only show last 10 iterations\r\n      let x = this.canvas.width / 10;\r\n      let cWdt = this.canvas.width;\r\n      arr.forEach(function (point) {\r\n        ctx.lineTo(x, parseInt(-point * factor + height, 10));\r\n        x = x + cWdt / 10;\r\n      });\r\n\r\n      ctx.strokeStyle = \"#FF0000\";\r\n      ctx.stroke();\r\n    }\r\n  }\r\n\r\n  componentDidUpdate() {}\r\n\r\n  UNSAFE_componentWillUpdate() {\r\n    // draw graph with accuracy of single training iterations\r\n    if (this.props.tiles.getGraphAcc()[0]) {\r\n      // draw horizontal lines with accuracy values (y-axis)\r\n      const max = 255;\r\n      let ctx = this.canvas.getContext(\"2d\");\r\n      let w = this.canvas.width;\r\n      let h = this.canvas.height;\r\n      ctx.clearRect(0, 0, w, h);\r\n      ctx.beginPath();\r\n      let step = (50 * w) / max;\r\n      ctx.font = \"10px Arial\";\r\n      ctx.fillStyle = \"#ddd\";\r\n      step = h / 5;\r\n      for (let s = step, i = 1; s < h; s += step, i++) {\r\n        ctx.moveTo(0, s);\r\n        ctx.lineTo(w, s);\r\n        ctx.fillText(100 - i * 20, 2, s - 2);\r\n      }\r\n      ctx.strokeStyle = \"#ddd\";\r\n      ctx.closePath();\r\n      ctx.stroke();\r\n\r\n      // draw graph with accuracy points from training iterations\r\n      let height = this.canvas.height;\r\n      let y = this.props.tiles.getGraphAcc()[0];\r\n      let factor = height / 100;\r\n\r\n      ctx.beginPath();\r\n      ctx.moveTo(0, parseInt(-y * factor + height, 10));\r\n\r\n      let arr = [];\r\n      if (this.props.tiles.getGraphAcc().length <= 10) {\r\n        arr = this.props.tiles.getGraphAcc();\r\n      } else {\r\n        let start = this.props.tiles.getGraphAcc().length - 10;\r\n        arr = this.props.tiles.getGraphAcc().slice(start - 1);\r\n      }\r\n\r\n      // only show last 10 iterations\r\n      let x = this.canvas.width / 10;\r\n      let cWdt = this.canvas.width;\r\n      arr.forEach(function (point) {\r\n        ctx.lineTo(x, parseInt(-point * factor + height, 10));\r\n        x = x + cWdt / 10;\r\n      });\r\n\r\n      ctx.strokeStyle = \"#FF0000\";\r\n      ctx.stroke();\r\n    }\r\n  }\r\n\r\n  render() {\r\n    return (\r\n      <div ref={(c) => (this.root = c)}>\r\n        <div style={{ marginLeft: \"5px\", marginTop: \"10px\" }}>\r\n          Overall model progress:\r\n        </div>\r\n        <canvas\r\n          style={{\r\n            background: \"#aaa\",\r\n            width: \"290px\",\r\n            marginLeft: \"5px\",\r\n            borderRadius: \"5px\",\r\n          }}\r\n          ref={(c) => (this.canvas = c)}\r\n        />\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\n// define the component's interface\r\nAccuracyGraph.propTypes = {\r\n  ome: PropTypes.object,\r\n  histogramConfig: PropTypes.object,\r\n  visibleImage: PropTypes.array,\r\n  coloredImages: PropTypes.array,\r\n  bounds: PropTypes.object,\r\n  // from withTiles\r\n  tiles: PropTypes.object,\r\n};\r\n\r\n//export default withTheme(withStyles(styles)(AccuracyGraph));\r\nexport default withTiles(AccuracyGraph);\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport Draggable from \"react-draggable\";\r\nimport { Resizable } from \"react-resizable\";\r\nimport classNames from \"classnames\";\r\n\r\nimport {\r\n  Typography,\r\n  Checkbox,\r\n  Select,\r\n  MenuItem,\r\n  Tooltip,\r\n  TextField,\r\n  Card,\r\n  Slider,\r\n  List,\r\n  ListItem,\r\n  ListItemText,\r\n  FormGroup,\r\n  FormControlLabel,\r\n  CircularProgress,\r\n  Tabs,\r\n  Tab,\r\n  Button,\r\n} from \"@mui/material\";\r\n\r\nimport {\r\n  ChatBubbleOutline,\r\n  DragIndicator,\r\n  Build,\r\n  Keyboard,\r\n  Mouse,\r\n} from \"@mui/icons-material\";\r\n\r\nimport { FontAwesomeIcon } from \"@fortawesome/react-fontawesome\";\r\nimport { faBrain } from \"@fortawesome/free-solid-svg-icons\";\r\n\r\nimport { withTiles } from \"../contexts/TilesContext\";\r\nimport { withPersistentStorage } from \"../contexts/PersistentStorageContext\";\r\nimport { withAllViewerContexts } from \"../contexts/AllViewerContexts\";\r\nimport AccuracyGraph from \"./AccuracyGraph\";\r\nimport SketchColorPicker from \"../../common/components/SketchColorPicker\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n\r\nconst styles = () => ({\r\n  tabsContainer: {\r\n    width: \"100%\",\r\n  },\r\n  tab: {\r\n    \"& *\": {\r\n      display: \"inline-block\",\r\n      fontSize: \"12px\",\r\n    },\r\n    \"& svg\": {\r\n      marginRight: \"5px\",\r\n      position: \"relative\",\r\n      top: \"2px\",\r\n    },\r\n  },\r\n  flexVerticalContainer: {\r\n    display: \"flex\",\r\n    flexFlow: \"column\",\r\n    height: \"100%\",\r\n  },\r\n  flexRowContentHeight: {\r\n    flex: \"0 1 auto\",\r\n    padding: \"10px\",\r\n  },\r\n  flexRowRemainingHeight: {\r\n    flex: \"1 1 auto\",\r\n    overflowY: \"auto\",\r\n  },\r\n  spacing: {\r\n    padding: \"10px\",\r\n    paddingBottom: 0,\r\n  },\r\n  dragIndicator: {\r\n    position: \"absolute\",\r\n    color: \"#000000\",\r\n    cursor: \"grab\",\r\n    bottom: 5,\r\n    right: 5,\r\n  },\r\n  grabbing: {\r\n    cursor: \"grabbing\",\r\n  },\r\n  toolBox: {\r\n    marginLeft: \"5px\",\r\n    marginRight: \"10px\",\r\n    marginTop: \"7px\",\r\n    display: \"inline-block\",\r\n  },\r\n  aiLabel: {\r\n    display: \"block\",\r\n    position: \"absolute\",\r\n    bottom: \"11px\",\r\n    right: \"4px\",\r\n    background: \"black\",\r\n    color: \"white\",\r\n    zIndex: 99999,\r\n    padding: \"0 5px\",\r\n    margin: 0,\r\n  },\r\n  imgOuter: {\r\n    \"&:hover .aiLabel\": {\r\n      display: \"none\",\r\n    },\r\n  },\r\n});\r\n\r\nclass GalleryToolBoxes extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n\r\n    this.state = {\r\n      grabbing: false,\r\n      toolbarSize: {\r\n        width: 300,\r\n        height:\r\n          this.props.project &&\r\n          !this.props.project.type.includes(\"HistoPointCounting\")\r\n            ? 355\r\n            : 525,\r\n      },\r\n      originalToolbarHeight: 355,\r\n      comboBoxSizeOptions: [\r\n        \"small (200px)\",\r\n        \"medium (300px)\",\r\n        \"large (600px)\",\r\n        \"full width\",\r\n      ],\r\n      showContour: false,\r\n      showFileNames: true,\r\n      drawCrosshair: this.props.showGallery ? false : true,\r\n      crosshairColor: \"#FF0000\",\r\n      crosshairOpacity: 1.0,\r\n      crosshairLineWidth: 1,\r\n      activeTab: 0,\r\n      automaticTraining: false,\r\n    };\r\n  }\r\n\r\n  getProjectLabel = () => {\r\n    // returns project label form viewerconfig\r\n    if (this.props.viewerConfig) {\r\n      return this.props.viewerConfig.project.label;\r\n    }\r\n  };\r\n\r\n  isScrollbarVisible = () => {\r\n    let el = document.getElementById(\"subtypesDiv\");\r\n    if (el !== null) {\r\n      return el.scrollHeight > el.clientHeight;\r\n    } else {\r\n      return false;\r\n    }\r\n  };\r\n\r\n  onResize = (event, { size }) => {\r\n    let minSizeHeight = 200;\r\n    size.height = size.height < minSizeHeight ? minSizeHeight : size.height;\r\n    this.setState({ toolbarSize: size });\r\n  };\r\n\r\n  handleChangeContour = (e) => {\r\n    const { setDrawContour } = this.props;\r\n    setDrawContour(e.target.checked ? true : false);\r\n    this.setState({ showContour: e.target.checked ? true : false });\r\n  };\r\n\r\n  handleChangeShowFileNames = (e) => {\r\n    const { setShowFileNames } = this.props;\r\n    setShowFileNames(e.target.checked ? true : false);\r\n    this.setState({ showFileNames: e.target.checked ? true : false });\r\n  };\r\n\r\n  handleChangeCombo = (e) => {\r\n    // change canvas size\r\n    if (e.target.value === 1) {\r\n      this.props.projectContext.setState({ galleryImageSize: 200 });\r\n    } else if (e.target.value === 2) {\r\n      this.props.projectContext.setState({ galleryImageSize: 300 });\r\n    } else if (e.target.value === 3) {\r\n      this.props.projectContext.setState({ galleryImageSize: 600 });\r\n    } else {\r\n      this.props.projectContext.setState({ galleryImageSize: -1 });\r\n    }\r\n    this.setFirstTimeGallery();\r\n    this.forceUpdate();\r\n  };\r\n\r\n  setFirstTimeGallery = () => {\r\n    // firstTimeGallery = true --> load new tiles\r\n    this.props.roiLayers[this.props.selectedLayer].layer.regionRois.forEach(\r\n      function (element) {\r\n        element.firstTimeGallery = true;\r\n      }\r\n    );\r\n  };\r\n\r\n  getStructuresForDropDown = () => {\r\n    const { structures, selectedLayer } = this.props;\r\n\r\n    let parentIndex = selectedLayer;\r\n    if (structures[selectedLayer].classificationSubtype) {\r\n      parentIndex = this.findParentIndex();\r\n    }\r\n\r\n    let childs = structures.filter(\r\n      (element) =>\r\n        element.parentId === structures[parentIndex].id &&\r\n        element.label !== \"leer [leer]\"\r\n    );\r\n    childs.unshift(structures[parentIndex]);\r\n    return childs;\r\n  };\r\n\r\n  findChilds = (subType) => {\r\n    const { structures } = this.props;\r\n    // return direct classification subtypes of selected structure\r\n    return structures.filter(\r\n      (element) =>\r\n        element.subtypeLevel === subType.subtypeLevel + 1 &&\r\n        element.parentId === subType.id &&\r\n        element.classificationSubtype\r\n    );\r\n  };\r\n\r\n  findParentIndex = () => {\r\n    const { structures, selectedLayer } = this.props;\r\n    // returns index of parentstructure in all structures\r\n    let parentIndex = structures.findIndex(\r\n      (element) => element.id === structures[selectedLayer].parentId\r\n    );\r\n    return parentIndex;\r\n  };\r\n\r\n  handleChangeFilteredStructure = (e) => {\r\n    const { structures, selectedLayer } = this.props;\r\n\r\n    let parentIndex = selectedLayer;\r\n    if (structures[selectedLayer].classificationSubtype) {\r\n      parentIndex = this.findParentIndex();\r\n    }\r\n\r\n    // find index of leer --> add 1 of all childs after leer\r\n    // get index of class leer in childs\r\n    let childs = this.findChilds(structures[parentIndex]);\r\n    let emptyIdx = childs.findIndex(\r\n      (element) => element.label === \"leer [leer]\"\r\n    );\r\n    let idx = e.target.value;\r\n    if (emptyIdx >= 0 && e.target.value >= emptyIdx + 1) {\r\n      idx = idx + 1;\r\n    }\r\n\r\n    this.props.onSelectLayer(parentIndex + idx);\r\n    this.props.tiles.setStructure(structures[parentIndex + idx]);\r\n  };\r\n\r\n  handleChangeCrosshair = (e, fromKeyPress) => {\r\n    const { setDrawCrosshair } = this.props;\r\n    if (fromKeyPress) {\r\n      this.setState({ drawCrosshair: this.state.drawCrosshair ? false : true });\r\n      setDrawCrosshair(this.state.drawCrosshair ? false : true);\r\n    } else {\r\n      this.setState({ drawCrosshair: e.target.checked ? true : false });\r\n      setDrawCrosshair(e.target.checked ? true : false);\r\n    }\r\n  };\r\n\r\n  handleChangeActiveTab = (event, value) => {\r\n    const { setAutomaticTraining } = this.props;\r\n    this.setState({ activeTab: value });\r\n    setAutomaticTraining(value === 1 ? true : false);\r\n  };\r\n\r\n  startTraining = (activeLearning) => {\r\n    const { structures, selectedLayer } = this.props;\r\n    // start training for dl model\r\n\r\n    // check if selectedLayer is parent\r\n    if (structures[selectedLayer].classificationSubtype) {\r\n      this.props.trainingWarning(\"subtype\");\r\n      return;\r\n    }\r\n\r\n    // check if structure has childs\r\n    // check if selectedLayer is parent\r\n    if (!structures[selectedLayer].hasChild) {\r\n      this.props.trainingWarning(\"hasNoChilds\");\r\n      return;\r\n    }\r\n\r\n    // check if enough objects per class\r\n    let childs = this.findClassificationChilds();\r\n    let enoughAnnos = this.enoughAnnotations(childs);\r\n    if (!enoughAnnos) {\r\n      this.props.trainingWarning(\"tooFewAnnotations\");\r\n      return;\r\n    }\r\n\r\n    this.props.saveChangesGallery();\r\n    this.props.setAlruns(true);\r\n    let passiveLearning = activeLearning ? false : true;\r\n    this.props.applyDL(\r\n      this.props.tools[\"alm_gallery_tool\"],\r\n      this.props.projectId,\r\n      this.props.fileId,\r\n      passiveLearning\r\n    );\r\n  };\r\n\r\n  findClassificationChilds = () => {\r\n    const { structures, selectedLayer } = this.props;\r\n    // return direct classification subtypes\r\n    return structures.filter(\r\n      (element) =>\r\n        element.parentId === structures[selectedLayer].id &&\r\n        element.classificationSubtype\r\n    );\r\n  };\r\n\r\n  enoughAnnotations = (childs) => {\r\n    const { roiLayers, selectedLayer } = this.props;\r\n    // check if enough annotations for training of dl model (at least one class with 5 annotations and one other class with 1 annotation)\r\n    let minFive = false;\r\n    let twoAnnotated = 0;\r\n    childs.forEach((element) => {\r\n      // get number of elements for child\r\n      let numberElements = roiLayers[selectedLayer].layer.regionRois.filter(\r\n        (roi) => roi.structureId === element.id\r\n      ).length;\r\n\r\n      // check if minimum of five in one class\r\n      if (numberElements >= 5) {\r\n        minFive = true;\r\n      }\r\n      // check if two classes with at least one element\r\n      if (numberElements >= 1) {\r\n        twoAnnotated = twoAnnotated + 1;\r\n      }\r\n    });\r\n\r\n    // if one class with at least five and one other class with at least one annotation --> enough annotations for training\r\n    let enough = false;\r\n    if (minFive && twoAnnotated >= 2) {\r\n      enough = true;\r\n    }\r\n    return enough;\r\n  };\r\n\r\n  applyModel = () => {\r\n    const { structures, selectedLayer } = this.props;\r\n    // apply trained dl model to selected structure unlabeled images\r\n\r\n    // check if selectedLayer is parent\r\n    if (structures[selectedLayer].classificationSubtype) {\r\n      this.props.trainingWarning(\"subtype\");\r\n      return;\r\n    }\r\n\r\n    // check if structure has childs\r\n    // check if selectedLayer is parent\r\n    if (!structures[selectedLayer].hasChild) {\r\n      this.props.trainingWarning(\"hasNoChilds\");\r\n      return;\r\n    }\r\n\r\n    // make warning that not changing layer while applying model\r\n    window.showWarningSnackbar(\r\n      \"Please do not change structure while applying the model.\"\r\n    );\r\n\r\n    this.props.saveChangesGallery();\r\n    this.props.setAlruns(true);\r\n    let passiveLearning = true;\r\n    let applyModel = true;\r\n    this.props.applyDL(\r\n      this.props.tools[\"alm_gallery_tool\"],\r\n      this.props.projectId,\r\n      this.props.fileId,\r\n      passiveLearning,\r\n      applyModel\r\n    );\r\n  };\r\n\r\n  handleChangeMakePredictions = (e) => {\r\n    const { setApplyModelAfterTraining } = this.props;\r\n    // change state of make predictions after training\r\n    setApplyModelAfterTraining(e.target.checked ? true : false);\r\n  };\r\n\r\n  checkToolInConfig = (toolName) => {\r\n    // checks if tool exists in viewerconfig\r\n    if (this.props.viewerConfig) {\r\n      if (this.props.viewerConfig.project.toolsInProject[toolName]) {\r\n        return true;\r\n      } else {\r\n        return false;\r\n      }\r\n    }\r\n  };\r\n\r\n  render() {\r\n    const {\r\n      classes,\r\n      selectedLayer,\r\n      structures,\r\n      roiLayers,\r\n      childsGallery,\r\n      childs,\r\n      classificationId,\r\n      showGallery,\r\n      page,\r\n      setCrosshairColor,\r\n      setCrosshairOpacity,\r\n      setCrosshairLineWidth,\r\n      galleryType,\r\n    } = this.props;\r\n    const { grabbing, activeTab, comboBoxSizeOptions } = this.state;\r\n\r\n    let comboBoxSizeValue = comboBoxSizeOptions.filter((option) =>\r\n      option.includes(String(this.props.projectContext.galleryImageSize))\r\n    )[0];\r\n\r\n    if (this.props.projectContext.galleryImageSize == -1) {\r\n      comboBoxSizeValue = \"full width\";\r\n    }\r\n\r\n    return (\r\n      <div>\r\n        {showGallery && (\r\n          <Draggable\r\n            handle=\".handle\"\r\n            onStart={() => this.setState({ grabbing: true })}\r\n            onStop={() => this.setState({ grabbing: false })}\r\n          >\r\n            <Resizable\r\n              className={classes.resizableContainer}\r\n              height={this.state.toolbarSize.height}\r\n              width={this.state.toolbarSize.width}\r\n              onResize={this.onResize}\r\n              resizeHandles={[\"s\"]}\r\n            >\r\n              <Card\r\n                style={{\r\n                  position: \"absolute\",\r\n                  left: \"20px\",\r\n                  top: \"10px\",\r\n                  width: this.state.toolbarSize.width,\r\n                  height: this.state.toolbarSize.height,\r\n                  backgroundColor: \"#EBEBEB\",\r\n                  opacity: 0.8,\r\n                  marginRight: \"10px\",\r\n                  zIndex: 20,\r\n                }}\r\n              >\r\n                <Tooltip disableInteractive title=\"Tools\">\r\n                  <Build\r\n                    style={{ float: \"right\", margin: \"5px 5px 0px 0px\" }}\r\n                  />\r\n                </Tooltip>\r\n\r\n                <FormGroup\r\n                  row\r\n                  style={{\r\n                    marginTop: \"12px\",\r\n                    marginLeft: \"10px\",\r\n                    marginBottom: \"5px\",\r\n                  }}\r\n                >\r\n                  <Typography style={{ width: \"100px\" }}>\r\n                    Preview size\r\n                  </Typography>\r\n                  <Select\r\n                    name=\"SelectComboBox\"\r\n                    variant=\"standard\"\r\n                    style={{ marginLeft: \"5px\", marginTop: \"-5px\" }}\r\n                    value={comboBoxSizeValue}\r\n                    onChange={this.handleChangeCombo}\r\n                    inputProps={{\r\n                      name: \"Image size\",\r\n                    }}\r\n                  >\r\n                    <MenuItem value={comboBoxSizeValue}>\r\n                      <em>{comboBoxSizeValue}</em>\r\n                    </MenuItem>\r\n                    <MenuItem value={1}>small (200px)</MenuItem>\r\n                    <MenuItem value={2}>medium (300px)</MenuItem>\r\n                    <MenuItem value={3}>large (600px)</MenuItem>\r\n                    {galleryType == \"FilesGallery\" && (\r\n                      <MenuItem value={4}>full width</MenuItem>\r\n                    )}\r\n                  </Select>\r\n                </FormGroup>\r\n\r\n                {this.props.project.type.includes(\"HistoPointCounting\") && (\r\n                  <FormGroup\r\n                    row\r\n                    style={{\r\n                      marginTop: \"20px\",\r\n                      marginLeft: \"10px\",\r\n                      marginBottom: \"5px\",\r\n                    }}\r\n                  >\r\n                    <Typography>Filter structure:</Typography>\r\n                    <Select\r\n                      name=\"SelectStructure\"\r\n                      variant=\"standard\"\r\n                      style={{ marginLeft: \"5px\", marginTop: \"-5px\" }}\r\n                      value={this.getStructuresForDropDown().findIndex(\r\n                        (element) => element.id === structures[selectedLayer].id\r\n                      )}\r\n                      onChange={this.handleChangeFilteredStructure}\r\n                    >\r\n                      {this.getStructuresForDropDown().map((structure, idx) => (\r\n                        <MenuItem key={idx} value={idx}>\r\n                          {structure.label}\r\n                        </MenuItem>\r\n                      ))}\r\n                    </Select>\r\n                  </FormGroup>\r\n                )}\r\n\r\n                {!this.props.project.type.includes(\"HistoPointCounting\") &&\r\n                  galleryType !== \"FilesGallery\" && (\r\n                    <FormControlLabel\r\n                      className={classes.toolBox}\r\n                      label=\"Show contour\"\r\n                      control={\r\n                        <Checkbox\r\n                          name=\"CheckboxShowContour\"\r\n                          checked={this.state.showContour}\r\n                          onChange={this.handleChangeContour}\r\n                        />\r\n                      }\r\n                    />\r\n                  )}\r\n\r\n                <List\r\n                  style={{\r\n                    marginTop: \"-10px\",\r\n                    marginBottom: \"-20px\",\r\n                    width: \"284px\",\r\n                    marginRight: this.isScrollbarVisible() ? \"20px\" : \"0px\",\r\n                  }}\r\n                >\r\n                  <ListItem>\r\n                    <ListItemText primary=\"Subtype name\" />\r\n                    {!this.props.project.type.includes(\r\n                      \"HistoPointCounting\"\r\n                    ) && (\r\n                      <Tooltip\r\n                        disableInteractive\r\n                        title=\"Left (L) or right (R) click./nLeft or right click on item to set subtypes.\"\r\n                      >\r\n                        <Mouse style={{ marginRight: \"50px\" }} />\r\n                      </Tooltip>\r\n                    )}\r\n                    <Tooltip\r\n                      disableInteractive\r\n                      title=\"Shortcut number on keyboard\"\r\n                    >\r\n                      <Keyboard\r\n                        style={{\r\n                          marginRight: !this.isScrollbarVisible()\r\n                            ? \"-17px\"\r\n                            : \"0px\",\r\n                        }}\r\n                      />\r\n                    </Tooltip>\r\n                  </ListItem>\r\n                </List>\r\n\r\n                <div\r\n                  style={{\r\n                    maxHeight:\r\n                      210 +\r\n                      (this.state.toolbarSize.height -\r\n                        this.state.originalToolbarHeight),\r\n                    overflow: \"auto\",\r\n                  }}\r\n                  id=\"subtypesDiv\"\r\n                >\r\n                  <List>\r\n                    {childsGallery.map((child, index) => (\r\n                      <ListItem\r\n                        key={index}\r\n                        onMouseUp={(e) => {\r\n                          let x = {\r\n                            name: child.label,\r\n                            color: child.color,\r\n                            id: child.id,\r\n                          };\r\n                          let structureId = structures[selectedLayer].id;\r\n                          if (\r\n                            e.nativeEvent.which === 3 &&\r\n                            classificationId[1] !== child.id\r\n                          ) {\r\n                            // right click\r\n                            this.props.tiles.setSingleSubtype(\r\n                              structureId,\r\n                              x,\r\n                              1\r\n                            );\r\n                            classificationId[2] = child.id;\r\n                          } else if (\r\n                            e.nativeEvent.which === 1 &&\r\n                            classificationId[2] !== child.id\r\n                          ) {\r\n                            // left click\r\n                            this.props.tiles.setSingleSubtype(\r\n                              structureId,\r\n                              x,\r\n                              0\r\n                            );\r\n                            classificationId[1] = child.id;\r\n                          }\r\n                          this.forceUpdate();\r\n                        }}\r\n                      >\r\n                        <ListItemText\r\n                          style={{ color: child.color }}\r\n                          primary={child.label}\r\n                        />\r\n                        {!this.props.project.type.includes(\r\n                          \"HistoPointCounting\"\r\n                        ) &&\r\n                          child.id === classificationId[1] && (\r\n                            <Typography style={{ marginRight: \"62px\" }}>\r\n                              L\r\n                            </Typography>\r\n                          )}\r\n                        {!this.props.project.type.includes(\r\n                          \"HistoPointCounting\"\r\n                        ) &&\r\n                          child.id === classificationId[2] && (\r\n                            <Typography style={{ marginRight: \"62px\" }}>\r\n                              R\r\n                            </Typography>\r\n                          )}\r\n                        <Typography style={{ marginRight: \"8px\" }}>\r\n                          {!this.props.project.type.includes(\r\n                            \"HistoPointCounting\"\r\n                          )\r\n                            ? index\r\n                            : index + 1}\r\n                        </Typography>\r\n                      </ListItem>\r\n                    ))}\r\n                  </List>\r\n                </div>\r\n\r\n                {!this.props.project.type.includes(\"HistoPointCounting\") &&\r\n                  galleryType == \"FilesGallery\" && (\r\n                    <FormControlLabel\r\n                      className={classes.toolBox}\r\n                      label=\"Show file names\"\r\n                      control={\r\n                        <Checkbox\r\n                          name=\"CheckboxShowFileNames\"\r\n                          checked={this.state.showFileNames}\r\n                          onChange={this.handleChangeShowFileNames}\r\n                        />\r\n                      }\r\n                    />\r\n                  )}\r\n\r\n                <DragIndicator\r\n                  className={classNames(\r\n                    \"handle\",\r\n                    classes.dragIndicator,\r\n                    grabbing && classes.grabbing\r\n                  )}\r\n                />\r\n              </Card>\r\n            </Resizable>\r\n          </Draggable>\r\n        )}\r\n\r\n        {showGallery && this.checkToolInConfig(\"GalleryTrainingTool\") && (\r\n          <Draggable\r\n            handle=\".handle\"\r\n            onStart={() => this.setState({ grabbing: true })}\r\n            onStop={() => this.setState({ grabbing: false })}\r\n          >\r\n            <Card\r\n              style={{\r\n                position: \"absolute\",\r\n                left: \"20px\",\r\n                top: \"375px\",\r\n                width: \"300px\",\r\n                height: \"435px\",\r\n                backgroundColor: \"#EBEBEB\",\r\n                opacity: 0.8,\r\n                marginRight: \"10px\",\r\n                zIndex: 15,\r\n              }}\r\n            >\r\n              <Tooltip disableInteractive title=\"AI training\">\r\n                <div>\r\n                  <FontAwesomeIcon\r\n                    icon={faBrain}\r\n                    style={{ float: \"right\", margin: \"5px 5px 0px 0px\" }}\r\n                  />\r\n                </div>\r\n              </Tooltip>\r\n\r\n              <Typography\r\n                className={classes.toolBox}\r\n                style={{ fontWeight: \"bold\" }}\r\n              >\r\n                Training information:\r\n              </Typography>\r\n\r\n              <br />\r\n\r\n              <Tabs\r\n                className={classes.tabsContainer}\r\n                style={{ minHeight: \"30px\" }}\r\n                value={activeTab}\r\n                onChange={this.handleChangeActiveTab}\r\n                indicatorColor=\"primary\"\r\n                textColor=\"primary\"\r\n                variant=\"fullWidth\"\r\n              >\r\n                <Tab\r\n                  className={classes.tab}\r\n                  style={{\r\n                    minWidth: \"100px\",\r\n                    minHeight: \"25px\",\r\n                    fontWeight: \"bold\",\r\n                  }}\r\n                  label=\"passive learning\"\r\n                />\r\n                <Tab\r\n                  className={classes.tab}\r\n                  style={{\r\n                    minWidth: \"100px\",\r\n                    minHeight: \"25px\",\r\n                    fontWeight: \"bold\",\r\n                  }}\r\n                  label=\"active learning\"\r\n                />\r\n              </Tabs>\r\n\r\n              <Typography\r\n                className={classes.toolBox}\r\n                style={{ marginTop: \"15px\" }}\r\n              >\r\n                {\"Epochs: \" + this.props.progressText}\r\n              </Typography>\r\n\r\n              <br />\r\n\r\n              <Typography className={classes.toolBox}>\r\n                {\"Accuracy: \" +\r\n                  Math.round(parseFloat(this.props.trainingAcc) * 100) +\r\n                  \"%\"}\r\n              </Typography>\r\n\r\n              <br />\r\n\r\n              {activeTab === 1 && (\r\n                <div style={{ marginTop: \"10px\" }}>\r\n                  <Tooltip\r\n                    disableInteractive\r\n                    title=\"Number of unlabeled images to classify for next training.\"\r\n                  >\r\n                    <Typography\r\n                      className={classes.toolBox}\r\n                      style={{ width: \"210px\" }}\r\n                    >\r\n                      Annotations for next training:\r\n                    </Typography>\r\n                  </Tooltip>\r\n                  <TextField\r\n                    id=\"nAnnos\"\r\n                    name=\"Textfield\"\r\n                    className={classes.toolBox}\r\n                    style={{ width: \"40px\", marginTop: \"5px\" }}\r\n                    value={this.props.startData}\r\n                    onChange={(e) => {\r\n                      this.props.setStartData(Number(e.target.value));\r\n                    }}\r\n                    onMouseEnter={() => {\r\n                      document.getElementById(\"nAnnos\").disabled = false;\r\n                      this.props.tiles.setOnPageInput(true);\r\n                    }}\r\n                    onMouseLeave={() => {\r\n                      this.props.tiles.setOnPageInput(false);\r\n                    }}\r\n                    onKeyDown={(e) => {\r\n                      if (e.key === \"Enter\") {\r\n                        //not tested, because not in use\r\n                        this.props.tiles.setOnPageInput(false);\r\n                        document.getElementById(\"nAnnos\").disabled = true;\r\n                      }\r\n                    }}\r\n                  />\r\n                  <br />\r\n                </div>\r\n              )}\r\n\r\n              <AccuracyGraph />\r\n\r\n              {activeTab === 0 && (\r\n                <div>\r\n                  <FormControlLabel\r\n                    style={{\r\n                      marginTop: \"-3px\",\r\n                      marginLeft: \"-3px\",\r\n                      marginBottom: \"0px\",\r\n                    }}\r\n                    label=\"Make predictions after training\"\r\n                    control={\r\n                      <Checkbox\r\n                        name=\"CheckboxMakePredictions\"\r\n                        checked={this.props.makePredictions}\r\n                        onChange={this.handleChangeMakePredictions}\r\n                      />\r\n                    }\r\n                  />\r\n\r\n                  <Button\r\n                    style={{ width: \"46%\", margin: \"5px\" }}\r\n                    size=\"small\"\r\n                    variant=\"contained\"\r\n                    color=\"primary\"\r\n                    onClick={() => this.startTraining()}\r\n                  >\r\n                    Train model\r\n                  </Button>\r\n\r\n                  <Button\r\n                    style={{ width: \"46%\", margin: \"5px\" }}\r\n                    size=\"small\"\r\n                    variant=\"contained\"\r\n                    color=\"primary\"\r\n                    onClick={() => this.applyModel()}\r\n                  >\r\n                    Apply model\r\n                  </Button>\r\n                </div>\r\n              )}\r\n\r\n              {activeTab === 1 && (\r\n                <Button\r\n                  style={{ width: \"96%\", marginLeft: \"6px\" }}\r\n                  size=\"small\"\r\n                  variant=\"contained\"\r\n                  color=\"primary\"\r\n                  onClick={() => this.startTraining(true)}\r\n                >\r\n                  Train and apply model\r\n                </Button>\r\n              )}\r\n\r\n              {this.props.alruns && activeTab === 1 && (\r\n                <div\r\n                  style={{\r\n                    position: \"absolute\",\r\n                    top: \"92px\",\r\n                    right: \"125px\",\r\n                  }}\r\n                >\r\n                  <CircularProgress />\r\n                </div>\r\n              )}\r\n\r\n              <DragIndicator\r\n                className={classNames(\r\n                  \"handle\",\r\n                  classes.dragIndicator,\r\n                  grabbing && classes.grabbing\r\n                )}\r\n              />\r\n            </Card>\r\n          </Draggable>\r\n        )}\r\n\r\n        {!this.props.showGallery && (\r\n          <Draggable\r\n            handle=\".handle\"\r\n            onStart={() => this.setState({ grabbing: true })}\r\n            onStop={() => this.setState({ grabbing: false })}\r\n          >\r\n            <Card\r\n              style={{\r\n                position: \"absolute\",\r\n                left: \"20px\",\r\n                top: \"20px\",\r\n                width: \"300px\",\r\n                height: \"500px\",\r\n                backgroundColor: \"#EBEBEB\",\r\n                opacity: 0.8,\r\n                marginRight: \"10px\",\r\n                zIndex: 20,\r\n              }}\r\n            >\r\n              <Tooltip disableInteractive title=\"Tools\">\r\n                <Build style={{ float: \"right\", margin: \"5px 5px 0px 0px\" }} />\r\n              </Tooltip>\r\n\r\n              <Typography className={classes.toolBox}>\r\n                Show crosshair:\r\n              </Typography>\r\n              <Checkbox\r\n                name=\"CheckboxShowCrosshair\"\r\n                className={classes.toolBox}\r\n                defaultChecked\r\n                onChange={this.handleChangeCrosshair}\r\n              />\r\n              <br />\r\n              <Typography className={classes.toolBox}>\r\n                Crosshair color:\r\n              </Typography>\r\n              <div className={classes.toolBox}>\r\n                <SketchColorPicker\r\n                  color={this.state.crosshairColor}\r\n                  handleChange={(color) => {\r\n                    this.setState({ crosshairColor: color });\r\n                    setCrosshairColor(color);\r\n                  }}\r\n                />\r\n              </div>\r\n              <br />\r\n              <Typography className={classes.toolBox}>\r\n                Opacity crosshair:\r\n              </Typography>\r\n              <Slider\r\n                style={{ width: \"100px\" }}\r\n                min={0}\r\n                max={100}\r\n                value={this.state.crosshairOpacity * 100}\r\n                onChange={(event, newValue) => {\r\n                  this.setState({ crosshairOpacity: newValue / 100 });\r\n                  setCrosshairOpacity(newValue / 100);\r\n                }}\r\n              />\r\n              <br />\r\n              <Typography\r\n                className={classes.toolBox}\r\n                style={{ width: \"150px\" }}\r\n              >\r\n                Crosshair linewidth:\r\n              </Typography>\r\n              <TextField\r\n                className={classes.toolBox}\r\n                name=\"Textfield\"\r\n                style={{ width: \"40px\", marginTop: \"5px\" }}\r\n                value={this.state.crosshairLineWidth}\r\n                onChange={(e) => {\r\n                  this.setState({ crosshairLineWidth: Number(e.target.value) });\r\n                  setCrosshairLineWidth(Number(e.target.value));\r\n                }}\r\n                inputProps={{\r\n                  step: 1,\r\n                  min: 0,\r\n                  max: 30,\r\n                  type: \"number\",\r\n                }}\r\n              />\r\n\r\n              <List\r\n                style={{\r\n                  marginTop: \"20px\",\r\n                  marginBottom: \"-20px\",\r\n                  width: \"284px\",\r\n                }}\r\n              >\r\n                <ListItem>\r\n                  <ListItemText primary=\"Subtype name\" />\r\n                  <Tooltip\r\n                    disableInteractive\r\n                    title=\"Left (L) or right (R) click./nLeft or right click on item to set subtypes.\"\r\n                  >\r\n                    <Mouse style={{ marginRight: \"50px\" }} />\r\n                  </Tooltip>\r\n                  <Tooltip\r\n                    disableInteractive\r\n                    title=\"Shortcut number on keyboard\"\r\n                  >\r\n                    <Keyboard />\r\n                  </Tooltip>\r\n                </ListItem>\r\n              </List>\r\n\r\n              <div\r\n                style={{\r\n                  maxHeight: \"245px\",\r\n                  overflow: \"auto\",\r\n                }}\r\n              >\r\n                <List>\r\n                  {childs.map((child, index) => (\r\n                    <ListItem\r\n                      key={index}\r\n                      onMouseUp={(e) => {\r\n                        if (\r\n                          e.nativeEvent.which === 3 &&\r\n                          classificationId[1] !== child.id\r\n                        ) {\r\n                          // right click\r\n                          classificationId[2] = child.id;\r\n                        } else if (\r\n                          e.nativeEvent.which === 1 &&\r\n                          classificationId[2] !== child.id\r\n                        ) {\r\n                          // left click\r\n                          classificationId[1] = child.id;\r\n                        }\r\n                        this.forceUpdate();\r\n                      }}\r\n                    >\r\n                      <ListItemText\r\n                        style={{ color: child.color }}\r\n                        primary={child.label}\r\n                      />\r\n                      {child.id === classificationId[1] && (\r\n                        <Typography style={{ marginRight: \"62px\" }}>\r\n                          L\r\n                        </Typography>\r\n                      )}\r\n                      {child.id === classificationId[2].id && (\r\n                        <Typography style={{ marginRight: \"62px\" }}>\r\n                          R\r\n                        </Typography>\r\n                      )}\r\n                      <Typography style={{ marginRight: \"8px\" }}>\r\n                        {index + 1}\r\n                      </Typography>\r\n                    </ListItem>\r\n                  ))}\r\n                </List>\r\n              </div>\r\n\r\n              <DragIndicator\r\n                className={classNames(\r\n                  \"handle\",\r\n                  classes.dragIndicator,\r\n                  grabbing && classes.grabbing\r\n                )}\r\n              />\r\n            </Card>\r\n          </Draggable>\r\n        )}\r\n\r\n        {!this.props.showGallery && (\r\n          <Draggable\r\n            handle=\".handle\"\r\n            onStart={() => this.setState({ grabbing: true })}\r\n            onStop={() => this.setState({ grabbing: false })}\r\n          >\r\n            <Card\r\n              style={{\r\n                position: \"absolute\",\r\n                left: \"20px\",\r\n                top: \"540px\",\r\n                width: \"300px\",\r\n                height: \"150px\",\r\n                backgroundColor: \"#EBEBEB\",\r\n                opacity: 0.8,\r\n                marginRight: \"10px\",\r\n                zIndex: 20,\r\n              }}\r\n            >\r\n              <Tooltip disableInteractive title=\"Add comments to the tile here\">\r\n                <ChatBubbleOutline\r\n                  style={{ float: \"right\", margin: \"5px 5px 0px 0px\" }}\r\n                />\r\n              </Tooltip>\r\n\r\n              <TextField\r\n                id=\"roiComment\"\r\n                name=\"Textfield\"\r\n                style={{\r\n                  margin: \"20px 5px 20px 5px\",\r\n                  width: \"80%\",\r\n                  marginLeft: \"10px\",\r\n                }}\r\n                label=\"Comment\"\r\n                multiline\r\n                rows={4}\r\n                variant=\"outlined\"\r\n                value={\r\n                  roiLayers[selectedLayer].layer.regionRois[page]\r\n                    ? roiLayers[selectedLayer].layer.regionRois[page].comment\r\n                    : \"\"\r\n                }\r\n                onChange={(e) => {\r\n                  roiLayers[selectedLayer].layer.regionRois[page].comment =\r\n                    e.target.value;\r\n                  this.forceUpdate();\r\n                }}\r\n                onMouseEnter={() => {\r\n                  document.getElementById(\"roiComment\").disabled = false;\r\n                  this.props.tiles.setOnPageInput(true);\r\n                }}\r\n                onMouseLeave={() => {\r\n                  this.props.tiles.setOnPageInput(false);\r\n                }}\r\n                onKeyDown={(e) => {\r\n                  if (e.key === \"Enter\") {\r\n                    // not tested, because not in use\r\n                    this.props.tiles.setOnPageInput(false);\r\n                    document.getElementById(\"roiComment\").disabled = true;\r\n                  }\r\n                }}\r\n              />\r\n              <DragIndicator\r\n                className={classNames(\r\n                  \"handle\",\r\n                  classes.dragIndicator,\r\n                  grabbing && classes.grabbing\r\n                )}\r\n              />\r\n            </Card>\r\n          </Draggable>\r\n        )}\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nGalleryToolBoxes.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  project: PropTypes.object,\r\n  roiLayers: PropTypes.array,\r\n  structures: PropTypes.array,\r\n  showGallery: PropTypes.bool,\r\n  setDrawContour: PropTypes.func,\r\n  setShowFileNames: PropTypes.func,\r\n  viewerConfig: PropTypes.object,\r\n  tiles: PropTypes.object,\r\n  tools: PropTypes.array,\r\n  selectedLayer: PropTypes.number,\r\n  page: PropTypes.number,\r\n  projectId: PropTypes.string,\r\n  fileId: PropTypes.string,\r\n  classificationId: PropTypes.array,\r\n  onSelectLayer: PropTypes.func,\r\n  setDrawCrosshair: PropTypes.func,\r\n  setAutomaticTraining: PropTypes.func,\r\n  trainingWarning: PropTypes.func,\r\n  saveChangesGallery: PropTypes.func,\r\n  setAlruns: PropTypes.func,\r\n  applyDL: PropTypes.func,\r\n  setApplyModelAfterTraining: PropTypes.func,\r\n  setCrosshairColor: PropTypes.func,\r\n  setCrosshairOpacity: PropTypes.func,\r\n  setCrosshairLineWidth: PropTypes.func,\r\n  childsGallery: PropTypes.array,\r\n  childs: PropTypes.array,\r\n  progressText: PropTypes.string,\r\n  trainingAcc: PropTypes.string,\r\n  startData: PropTypes.number,\r\n  setStartData: PropTypes.func,\r\n  makePredictions: PropTypes.bool,\r\n  alruns: PropTypes.bool,\r\n  galleryType: PropTypes.string,\r\n  projectContext: PropTypes.object,\r\n};\r\n\r\nexport default withAllViewerContexts(\r\n  withPersistentStorage(withTiles(withStyles(styles)(GalleryToolBoxes)))\r\n);\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport {\r\n  Grid,\r\n  TablePagination,\r\n  Tooltip,\r\n  //TextField,\r\n  CircularProgress,\r\n} from \"@mui/material\";\r\n\r\nimport { withTiles } from \"../contexts/TilesContext\";\r\nimport { withPersistentStorage } from \"../contexts/PersistentStorageContext\";\r\nimport { withAllViewerContexts } from \"../contexts/AllViewerContexts\";\r\nimport CroppedImage from \"./CroppedImage\";\r\nimport SceneImage from \"./SceneImage\";\r\nimport GalleryToolBoxes from \"./GalleryToolBoxes\";\r\nimport { getParentIndexLayer } from \"../utils/StructuresUtils\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n\r\nconst styles = () => ({\r\n  tabsContainer: {\r\n    width: \"100%\",\r\n  },\r\n  tab: {\r\n    minWidth: 345 / 3,\r\n    \"& *\": {\r\n      display: \"inline-block\",\r\n      fontSize: \"20px\",\r\n      lineHeight: \"18px\",\r\n    },\r\n    \"& svg\": {\r\n      marginRight: \"5px\",\r\n      position: \"relative\",\r\n      top: \"2px\",\r\n    },\r\n  },\r\n  flexVerticalContainer: {\r\n    display: \"flex\",\r\n    flexFlow: \"column\",\r\n    height: \"100%\",\r\n  },\r\n  flexRowContentHeight: {\r\n    flex: \"0 1 auto\",\r\n    padding: \"10px\",\r\n  },\r\n  flexRowRemainingHeight: {\r\n    flex: \"1 1 auto\",\r\n    overflowY: \"auto\",\r\n  },\r\n  spacing: {\r\n    padding: \"10px\",\r\n    paddingBottom: 0,\r\n  },\r\n  dragIndicator: {\r\n    position: \"absolute\",\r\n    color: \"#000000\",\r\n    cursor: \"grab\",\r\n    bottom: 5,\r\n    right: 5,\r\n  },\r\n  grabbing: {\r\n    cursor: \"grabbing\",\r\n  },\r\n  toolBox: {\r\n    marginLeft: \"5px\",\r\n    marginRight: \"10px\",\r\n    marginTop: \"7px\",\r\n    display: \"inline-block\",\r\n  },\r\n  aiLabel: {\r\n    display: \"block\",\r\n    position: \"absolute\",\r\n    bottom: \"11px\",\r\n    right: \"4px\",\r\n    background: \"black\",\r\n    color: \"white\",\r\n    zIndex: 99999,\r\n    padding: \"0 5px\",\r\n    margin: 0,\r\n  },\r\n  imgOuter: {\r\n    \"&:hover .aiLabel\": {\r\n      display: \"none\",\r\n    },\r\n  },\r\n});\r\n\r\nclass Gallery extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n    // transmit context to componentRef\r\n    if (props.componentRef) props.componentRef(this);\r\n\r\n    this.state = {\r\n      page: 0,\r\n      rowsPerPage: this.getRowsPerPageForProject(),\r\n      drawContour: false,\r\n      showFileNames: true,\r\n      galleryMounted: false,\r\n      drawCrosshair: this.props.showGallery ? false : true,\r\n      crosshairColor: \"#FF0000\",\r\n      crosshairOpacity: 1.0,\r\n      crosshairLineWidth: 1,\r\n      canvasSize: this.props.showGallery ? 300 : 750,\r\n      startData: 50,\r\n      automaticTraining: false,\r\n      elementCount: 0,\r\n      z: 0,\r\n      t: 0,\r\n      playingZ: false,\r\n      zsr: 60,\r\n      playDirectionZ: 1,\r\n      selectedWithKey: false,\r\n      isBrightfield:\r\n        this.props.ome &&\r\n        this.props.ome.channels.length === 1 &&\r\n        this.props.ome.channels[0].type === \"brightfield\",\r\n      objectToLoad: {\r\n        index: 0,\r\n        roi: null,\r\n        rois: [],\r\n      },\r\n      progressText: \"0/50\",\r\n      trainingAcc: \"0\",\r\n    };\r\n\r\n    this.enoughAnnosCount = 0;\r\n    this.tile = [];\r\n    this.pageIndex = 0;\r\n    this.classificationId = [0, 0, 0];\r\n    this.pageInput = \"\";\r\n    this.validationAcc = 0;\r\n  }\r\n\r\n  setDrawContour = (e) => {\r\n    // set value from toolbox component\r\n    this.setState({ drawContour: e });\r\n  };\r\n\r\n  setShowFileNames = (e) => {\r\n    // set value from toolbox component\r\n    this.setState({ showFileNames: e });\r\n  };\r\n\r\n  setAutomaticTraining = (e) => {\r\n    // set value from toolbox component\r\n    this.setState({ automaticTraining: e });\r\n  };\r\n\r\n  setDrawCrosshair = (e) => {\r\n    // set value from toolbox component\r\n    this.setState({ drawCrosshair: e });\r\n  };\r\n\r\n  setCrosshairColor = (e) => {\r\n    // set value from toolbox component\r\n    this.setState({ crosshairColor: e });\r\n  };\r\n\r\n  setCrosshairOpacity = (e) => {\r\n    // set value from toolbox component\r\n    this.setState({ crosshairOpacity: e });\r\n  };\r\n\r\n  setCrosshairLineWidth = (e) => {\r\n    // set value from toolbox component\r\n    this.setState({ crosshairLineWidth: e });\r\n  };\r\n\r\n  setStartData = (e) => {\r\n    // set value from toolbox component\r\n    this.setState({ startData: e });\r\n  };\r\n\r\n  componentDidMount() {\r\n    this.setElementCount();\r\n    setTimeout(() => {\r\n      this.setState({ galleryMounted: true });\r\n    }, 1000);\r\n  }\r\n\r\n  allImagesLoaded = () => {\r\n    const { tiles } = this.props;\r\n    // check if all images finished loading\r\n    let allImagesComplete = true;\r\n    for (let value of Object.values(tiles.getVisibleImages())) {\r\n      if (!value.complete) {\r\n        allImagesComplete = false;\r\n      }\r\n    }\r\n    return allImagesComplete;\r\n  };\r\n\r\n  setObjectToLoad = (fromChangePage, fromMount) => {\r\n    const { structures, roiLayers, selectedLayer } = this.props;\r\n    // set next roi for loading its images from backend or cache\r\n\r\n    let idx = 0;\r\n    let loadedRois;\r\n    if (fromMount) {\r\n      // if component mounts\r\n      if (this.props.showGallery) {\r\n        idx =\r\n          this.props.tiles.getPage(structures[selectedLayer].id) *\r\n          this.state.rowsPerPage;\r\n      } else {\r\n        idx =\r\n          this.props.tiles.getTilePage(structures[selectedLayer].id) *\r\n          this.state.rowsPerPage;\r\n      }\r\n      loadedRois = [];\r\n    } else {\r\n      // if objectToLoad was already set\r\n      let pg;\r\n      if (this.props.showGallery) {\r\n        pg = this.props.tiles.getPage(structures[selectedLayer].id);\r\n      } else {\r\n        pg = this.props.tiles.getTilePage(structures[selectedLayer].id);\r\n      }\r\n      idx = fromChangePage\r\n        ? pg * this.state.rowsPerPage\r\n        : this.state.objectToLoad.index + 1;\r\n      // get rois that are already loaded\r\n      loadedRois = this.state.objectToLoad.rois;\r\n    }\r\n\r\n    // get next roi\r\n    let roi;\r\n    if (!structures[selectedLayer].classificationSubtype) {\r\n      if (this.props.project.type.includes(\"HistoPointCounting\")) {\r\n        roi = roiLayers[selectedLayer].layer.regionRois.filter(\r\n          (element) =>\r\n            element.isSubtype && element.subtypeName !== \"leer [leer]\"\r\n        )[idx];\r\n      } else {\r\n        roi = roiLayers[selectedLayer].layer.regionRois[idx];\r\n      }\r\n    } else {\r\n      // get subtypeRois\r\n      let parentIdx = getParentIndexLayer(\r\n        structures[selectedLayer],\r\n        structures\r\n      );\r\n      let subtypeRois = roiLayers[parentIdx].layer.regionRois.filter(\r\n        (element) => this.isRoiSubtype(element)\r\n      );\r\n      roi = subtypeRois[idx];\r\n    }\r\n\r\n    // push new roi to loaded rois\r\n    if (!loadedRois.includes(roi) && roi) {\r\n      loadedRois.push(roi);\r\n    }\r\n\r\n    // new objectToLoad\r\n    let x = {\r\n      index: idx,\r\n      roi: roi,\r\n      rois: loadedRois,\r\n    };\r\n    this.setState({ objectToLoad: x });\r\n  };\r\n\r\n  getRowsPerPageForProject() {\r\n    // checks default value for rows per page for specific modules\r\n    if (this.props.showGallery) {\r\n      if (this.getProjectLabel() === \"Polarity - Gallery\") {\r\n        return 10;\r\n      } else if (this.getProjectLabel() === \"Tiles Tool\") {\r\n        return 18;\r\n      } else {\r\n        return 10;\r\n      }\r\n    } else {\r\n      return 1;\r\n    }\r\n  }\r\n\r\n  getRowsPerPageOptionsForProject() {\r\n    // checks default value for rows per page options for specific modules\r\n    if (this.props.showGallery) {\r\n      if (this.getProjectLabel() === \"Polarity - Gallery\") {\r\n        return [10, 15];\r\n      } else if (this.getProjectLabel() === \"Tiles Tool\") {\r\n        return [18];\r\n      } else {\r\n        return [10, 20];\r\n      }\r\n    } else {\r\n      return [1];\r\n    }\r\n  }\r\n\r\n  getProjectLabel = () => {\r\n    // returns project label from viewerconfig\r\n    if (this.props.viewerConfig) {\r\n      return this.props.viewerConfig.project.label;\r\n    }\r\n  };\r\n\r\n  findParentIndex = () => {\r\n    const { structures, selectedLayer } = this.props;\r\n    // returns index of parentstructure in all structures\r\n    let parentIndex = structures.findIndex(\r\n      (element) => element.id === structures[selectedLayer].parentId\r\n    );\r\n    return parentIndex;\r\n  };\r\n\r\n  checkToolInConfig = (toolName) => {\r\n    // checks if tool exists in viewerconfig\r\n    if (this.props.viewerConfig) {\r\n      if (this.props.viewerConfig.project.toolsInProject[toolName]) {\r\n        return true;\r\n      } else {\r\n        return false;\r\n      }\r\n    }\r\n  };\r\n\r\n  setElementCount = () => {\r\n    const { structures, selectedLayer, roiLayers, project, galleryType } =\r\n      this.props;\r\n\r\n    let elCnt = 0;\r\n    let structure = structures[selectedLayer];\r\n    if (galleryType !== \"FilesGallery\") {\r\n      // calculate number of elements in selected layer\r\n      if (structure.isSubtype && structure.classificationSubtype) {\r\n        // get all childNames to find rois\r\n        let childNames = [];\r\n        this.findAllSubtypes(true).forEach((element) => {\r\n          childNames.push(element.label);\r\n        });\r\n        // get number of rois of subtypes in parent layer\r\n        let parentIndex = getParentIndexLayer(\r\n          structures[selectedLayer],\r\n          structures\r\n        );\r\n        elCnt = roiLayers[parentIndex].layer.regionRois.filter(\r\n          (element) =>\r\n            element.isSubtype &&\r\n            (childNames.includes(element.subtypeName) ||\r\n              element.subtypeName === structure.label)\r\n        ).length;\r\n      } else {\r\n        if (project.type.includes(\"HistoPointCounting\")) {\r\n          // count only subtype objects\r\n          elCnt = roiLayers[selectedLayer].layer.regionRois.filter(\r\n            (element) =>\r\n              element.isSubtype && element.subtypeName !== \"leer [leer]\"\r\n          ).length;\r\n        } else {\r\n          // count all objects in parent layer\r\n          elCnt = roiLayers[selectedLayer].layer.regionRois.length;\r\n        }\r\n      }\r\n      this.state.elementCount !== elCnt &&\r\n        this.setState({ elementCount: elCnt });\r\n    } else {\r\n      // calculate number of files that belong to selected class\r\n      if (structure.classificationSubtype) {\r\n        // get all childNames to find rois\r\n        let childIds = [];\r\n        this.findAllSubtypes(true).forEach((element) => {\r\n          childIds.push(element.id);\r\n        });\r\n        childIds.push(structure.id); // add selected structure\r\n        elCnt = project.files.filter(\r\n          (element) => element.classId && childIds.includes(element.classId)\r\n        ).length;\r\n      } else {\r\n        elCnt = project.files.length;\r\n      }\r\n\r\n      this.state.elementCount !== elCnt &&\r\n        this.setState({ elementCount: elCnt });\r\n    }\r\n  };\r\n\r\n  componentDidUpdate() {\r\n    const { structures, selectedLayer } = this.props;\r\n    // get subtypes for selected structure\r\n    let subtypes = this.props.tiles.getSubtypes(structures[selectedLayer].id);\r\n    // set colors for subtypes\r\n    if (subtypes[0]) {\r\n      this.classificationId[1] = subtypes[0].id;\r\n    }\r\n    if (subtypes[1]) {\r\n      this.classificationId[2] = subtypes[1].id;\r\n    }\r\n    this.classificationId[0] = structures[selectedLayer].id;\r\n  }\r\n\r\n  updateGallery = () => {\r\n    // update gallery (from cropped image)\r\n    this.forceUpdate();\r\n  };\r\n\r\n  UNSAFE_componentWillMount() {\r\n    const { selectedObjects, structures, selectedLayer } = this.props;\r\n\r\n    // push saved acc points to context\r\n    if (this.props.tiles.getAccPoints().length === 0) {\r\n      for (let i = 0; i < selectedObjects.coordinates.length; i++) {\r\n        let acc = selectedObjects.coordinates[i][\"acc\"];\r\n        if (Math.round(selectedObjects.coordinates[i][\"acc\"]) !== -1) {\r\n          this.props.tiles.pushAccPoint(acc * 100);\r\n        }\r\n      }\r\n      // set first iteration false if there were AL iteratoins before\r\n      if (selectedObjects.coordinates.length > 1) {\r\n        this.props.tiles.setFirstIteration(false);\r\n      }\r\n    }\r\n\r\n    // set context annotations count\r\n    if (this.props.tiles.getStrAnnoCount().length === 0) {\r\n      let object = this.props.persistentStorage.load(\"contextObject\");\r\n      if (object && object.length === this.props.structures.length) {\r\n        this.props.tiles.setAnnoCount(object);\r\n      } else {\r\n        this.setAnnotationsContext();\r\n      }\r\n    }\r\n\r\n    // set context slected subtypes and pages\r\n    if (this.props.tiles.getSubtypesPages().length === 0) {\r\n      let object = this.props.persistentStorage.load(\"subtypesPagesObject\");\r\n      if (object && object.length === this.props.structures.length) {\r\n        this.props.tiles.setSubtypesPages(object);\r\n      } else {\r\n        this.setSubtypesPagesContext();\r\n      }\r\n    }\r\n\r\n    // set context for accuracy graph\r\n    if (this.props.tiles.getGraphAcc().length === 0) {\r\n      let object = this.props.persistentStorage.load(\"accGraphObject\");\r\n      if (object) {\r\n        this.props.tiles.setGraphAcc(object);\r\n      }\r\n    }\r\n\r\n    // check if new dynamic structure\r\n    if (this.props.tiles.getSubtypesPages().length !== structures.length) {\r\n      this.setDynamicStructure();\r\n    }\r\n\r\n    // set page in context\r\n    let page = 0;\r\n    if (this.props.showGallery) {\r\n      page = this.props.tiles.getPage(structures[selectedLayer].id);\r\n    } else {\r\n      page = this.props.tiles.getTilePage(structures[selectedLayer].id);\r\n    }\r\n\r\n    if (this.state.page !== page) {\r\n      this.setState({ page: page });\r\n    }\r\n\r\n    this.setSubtypeValues();\r\n\r\n    // set objectToLoad\r\n    this.setObjectToLoad(false, true);\r\n\r\n    // set special image size for tiles project module\r\n    if (!this.props.showGallery) {\r\n      this.props.projectContext.setState({ galleryImageSize: 750 });\r\n    }\r\n  }\r\n\r\n  setDynamicStructure = () => {\r\n    const { structures } = this.props;\r\n    // put new dynamic structure to context\r\n\r\n    // get index of new dynamic structure\r\n    let dynamicIndex = 0;\r\n    structures.forEach((element, idx) => {\r\n      let sameId = this.props.tiles\r\n        .getSubtypesPages()\r\n        .filter((str) => str.id === element.id);\r\n      if (sameId > -1) {\r\n        dynamicIndex = idx;\r\n      }\r\n    });\r\n\r\n    // put dynamic structure to context object\r\n    this.props.tiles.pushDynamicStructureSP(\r\n      structures[dynamicIndex],\r\n      dynamicIndex\r\n    );\r\n    this.props.tiles.pushDynamicStructureAC(\r\n      structures[dynamicIndex].id,\r\n      dynamicIndex\r\n    );\r\n  };\r\n\r\n  setAnnotationsContext = () => {\r\n    const { structures } = this.props;\r\n    // create context for annotationCount\r\n    let lenStructures = structures.length;\r\n    for (let i = 0; i < lenStructures; i++) {\r\n      this.props.tiles.pushStrAnnoCount(structures[i].id);\r\n    }\r\n  };\r\n\r\n  setSubtypesPagesContext = () => {\r\n    const { structures } = this.props;\r\n    // create context selected subtypes an pages\r\n    let lenStructures = structures.length;\r\n    for (let i = 0; i < lenStructures; i++) {\r\n      this.props.tiles.pushSubtypesPages(structures[i].label, structures[i].id);\r\n    }\r\n  };\r\n\r\n  findAllSubtypes = () => {\r\n    const { structures, selectedLayer } = this.props;\r\n    // get all subtypes of selectedLayer (also subsubtypes)\r\n\r\n    // first get all direct childs\r\n    let childs = this.findChilds(structures[selectedLayer]);\r\n    let allChilds = [];\r\n\r\n    // search for childs of childa until no childs are checked for childs\r\n    while (childs.length !== 0) {\r\n      // code block to be executed\r\n      childs = childs.concat(this.findChilds(childs[0]));\r\n      if (!allChilds.includes(childs[0]) && childs[0].classificationSubtype) {\r\n        allChilds.push(childs[0]);\r\n      }\r\n      childs.shift();\r\n    }\r\n    return allChilds;\r\n  };\r\n\r\n  setSubtypeValues = () => {\r\n    const { structures, selectedLayer } = this.props;\r\n\r\n    // get selected subtypes for classification\r\n    let subtypesInContext =\r\n      this.props.tiles.getSubtypes(structures[selectedLayer].id).length !== 0;\r\n\r\n    if (subtypesInContext) {\r\n      // set classificationIds\r\n      let subtypes = this.props.tiles.getSubtypes(structures[selectedLayer].id);\r\n\r\n      // set ida for subtypes\r\n      if (subtypes[0]) {\r\n        this.classificationId[1] = subtypes[0].id;\r\n      }\r\n      if (subtypes[1]) {\r\n        this.classificationId[2] = subtypes[1].id;\r\n      }\r\n      this.classificationId[0] = structures[selectedLayer].id;\r\n    } else {\r\n      // put subtypes to context if not in context yet\r\n      let subtype_1;\r\n      subtype_1 = this.findChilds(structures[selectedLayer]);\r\n      let twoSubtypes = subtype_1.slice(0, 2);\r\n      this.props.tiles.setSubtypes(structures[selectedLayer].id, twoSubtypes);\r\n    }\r\n  };\r\n\r\n  getSubtypes = () => {\r\n    const { structures, selectedLayer } = this.props;\r\n    // get direct classification subtypes of selected structure\r\n    let subtypes;\r\n    subtypes = structures.filter(\r\n      (element) =>\r\n        element.classificationSubtype &&\r\n        element.parentId === structures[selectedLayer].id\r\n    );\r\n    return subtypes;\r\n  };\r\n\r\n  UNSAFE_componentWillUpdate(nextProps) {\r\n    const { selectedObjects, structures, selectedLayer, roiLayers } =\r\n      this.props;\r\n\r\n    // set isBrightfield if ome is null\r\n    if (this.props.ome === null && nextProps.ome !== null) {\r\n      this.setState({\r\n        isBrightfield:\r\n          nextProps.ome &&\r\n          nextProps.ome.channels.length === 1 &&\r\n          nextProps.ome.channels[0].type === \"brightfield\",\r\n      });\r\n    }\r\n\r\n    // set subtypes for classification\r\n    this.setSubtypeValues();\r\n\r\n    // if parent color is white --> change it\r\n    if (!structures[selectedLayer].isSubtype) {\r\n      let clr = structures[selectedLayer].color;\r\n      roiLayers[selectedLayer].layer.regionRois.forEach(function (element) {\r\n        if (element.color === \"#FFFFFF\") {\r\n          element.color = clr;\r\n        }\r\n      });\r\n    }\r\n\r\n    // find selectedObjects in roiLayers and set properties\r\n    let selObjCord = selectedObjects.coordinates;\r\n    if (\r\n      (selObjCord &&\r\n        selObjCord.length > 0 &&\r\n        structures[selectedLayer].isSubtype === false) ||\r\n      this.props.selObjs === true\r\n    ) {\r\n      if (selObjCord[0] !== null) {\r\n        // set properties for selectedObjects\r\n        selectedObjects.coordinates\r\n          .map(\r\n            (x) =>\r\n              roiLayers[selectedLayer].layer.regionRois.filter(\r\n                (element) =>\r\n                  parseInt(element.bounds.left, 10) === x.x &&\r\n                  parseInt(element.bounds.top, 10) === x.y &&\r\n                  element.isSubtype\r\n              )[0]\r\n          )\r\n          .filter((element) => element && !element.isLabeled)\r\n          .map((roi) => {\r\n            roi.isSelObj = true;\r\n            roi.aiAnnotated = true;\r\n            return true;\r\n          });\r\n      }\r\n    }\r\n\r\n    // set layer for subtype- or parent structure i active tool\r\n    let indexLayer = 0;\r\n    if (\r\n      structures[selectedLayer] &&\r\n      structures[selectedLayer].isSubtype &&\r\n      structures[selectedLayer].classificationSubtype\r\n    ) {\r\n      indexLayer = getParentIndexLayer(structures[selectedLayer], structures);\r\n    } else {\r\n      indexLayer = nextProps.selectedLayer;\r\n    }\r\n    if (nextProps.tools[nextProps.activeTool]) {\r\n      nextProps.tools[nextProps.activeTool].setLayer({\r\n        layer: nextProps.roiLayers[indexLayer].layer,\r\n        ome: nextProps.ome,\r\n        fileId: nextProps.fileId,\r\n        projectId: nextProps.projectId,\r\n        structures: nextProps.structures,\r\n        roiLayers: nextProps.roiLayers,\r\n        drawLayer: nextProps.drawLayer,\r\n        selectedLayer: nextProps.selectedLayer,\r\n        updateProject: nextProps.updateProject,\r\n        commentLayer: nextProps.commentLayer,\r\n        allRoiLayers: nextProps.allRoiLayers,\r\n        viewerConfig_project: nextProps.viewerConfig.project,\r\n        project: nextProps.project,\r\n        ctx: this.ctx,\r\n        histogramConfig: nextProps.histogramConfig,\r\n        updateFileClasses: nextProps.updateFileClasses,\r\n      });\r\n    }\r\n\r\n    // update elementCount\r\n    this.setElementCount();\r\n\r\n    // set page from context\r\n    let page = 0;\r\n    if (this.props.showGallery) {\r\n      page = this.props.tiles.getPage(structures[selectedLayer].id);\r\n    } else {\r\n      page = this.props.tiles.getTilePage(structures[selectedLayer].id);\r\n    }\r\n\r\n    if (this.state.page !== page) {\r\n      this.setState({ page: page });\r\n    }\r\n\r\n    // if selected structure changed --> reset object/roi to load next\r\n    if (\r\n      this.props.tiles.getStructure() !== this.props.tiles.getStructureBefore()\r\n    ) {\r\n      this.setObjectToLoad(false, true);\r\n      this.props.tiles.setStructure(structures[selectedLayer]);\r\n    }\r\n\r\n    // check if new dynamic structure\r\n    if (this.props.tiles.getSubtypesPages().length !== structures.length) {\r\n      this.setDynamicStructure();\r\n    }\r\n  }\r\n\r\n  scroll = (top) => {\r\n    // scrolls that cropped image that calls function (selected image) is on top in gallery\r\n    var el = document.getElementById(\"galleryWindow\");\r\n    el.scrollTo({ top: el.scrollTop + top - 90, behavior: \"smooth\" });\r\n  };\r\n\r\n  setSelectedWithKey = (b) => {\r\n    // sets variable if classifying with keys (automatic srolling) or with mouse (no automatic scrolling)\r\n    this.setState({ selectedWithKey: b });\r\n  };\r\n\r\n  selectNewImage = (dir) => {\r\n    const { galleryType } = this.props;\r\n    // select next or previous roi with right or left arrow key\r\n    if (!this.state.selectedWithKey) {\r\n      // set selectedWith key true --> automatic scrolling enabled\r\n      this.setSelectedWithKey(true);\r\n    }\r\n\r\n    if (galleryType !== \"FilesGallery\") {\r\n      this.selectNewRoi(dir);\r\n    } else {\r\n      this.selectNewFile(dir);\r\n    }\r\n\r\n    this.forceUpdate();\r\n  };\r\n\r\n  selectNewRoi = (dir) => {\r\n    const { selectedLayer, roiLayers, structures, project } = this.props;\r\n\r\n    // if not classification structure (parent)\r\n    if (!structures[selectedLayer].classificationSubtype) {\r\n      let roiLay = [];\r\n      if (project.type.includes(\"HistoPointCounting\")) {\r\n        roiLay = roiLayers[selectedLayer].layer.regionRois.filter(\r\n          (element) =>\r\n            element.isSubtype && element.subtypeName !== \"leer [leer]\"\r\n        );\r\n      } else {\r\n        roiLay = roiLayers[selectedLayer].layer.regionRois;\r\n      }\r\n\r\n      // get index of currently selected roi\r\n      let idx = roiLay.findIndex((element) => element.selected);\r\n\r\n      if (dir === \"right\") {\r\n        // right key\r\n        if (roiLay[idx + 1] && roiLay[idx]) {\r\n          // make next roi selected\r\n          roiLay[idx + 1].selected = true;\r\n          roiLay[idx + 1].selectedWithKey = true;\r\n          roiLay[idx].selected = false;\r\n          roiLay[idx].selectedWithKey = false;\r\n          // check if change page\r\n          if (idx === (this.state.page + 1) * this.state.rowsPerPage - 1) {\r\n            this.setPage(this.state.page + 2);\r\n          }\r\n        }\r\n      } else {\r\n        // left key\r\n        if (roiLay[idx - 1] && roiLay[idx]) {\r\n          //make previous roi selected\r\n          roiLay[idx - 1].selected = true;\r\n          roiLay[idx - 1].selectedWithKey = true;\r\n          roiLay[idx].selected = false;\r\n          roiLay[idx].selectedWithKey = false;\r\n          // check if change page\r\n          if (idx % this.state.rowsPerPage === 0) {\r\n            this.setPage(this.state.page);\r\n          }\r\n        }\r\n      }\r\n    }\r\n\r\n    // if classification structure\r\n    if (structures[selectedLayer].classificationSubtype) {\r\n      let parentLayer = getParentIndexLayer(\r\n        structures[selectedLayer],\r\n        structures\r\n      );\r\n\r\n      // get index of selRoi in all rois\r\n      let idxSelRoi = roiLayers[parentLayer].layer.regionRois.findIndex(\r\n        (element) => element.selected\r\n      );\r\n\r\n      // get all rois of subtype\r\n      let childLabels = [];\r\n      this.findChilds(structures[selectedLayer]).forEach((element) => {\r\n        childLabels.push(element.label);\r\n      });\r\n      let subtypeRois = roiLayers[parentLayer].layer.regionRois.filter(\r\n        (element) =>\r\n          element.subtypeName === structures[selectedLayer].label ||\r\n          childLabels.includes(element.subtypeName)\r\n      );\r\n\r\n      // get index of selRoi in subtype rois\r\n      let idxInSubtypes = subtypeRois.findIndex((element) => element.selected);\r\n\r\n      // get next or previous roi\r\n      let nextRoi = subtypeRois[idxInSubtypes];\r\n      if (dir === \"right\") {\r\n        if (subtypeRois[idxInSubtypes + 1]) {\r\n          nextRoi = subtypeRois[idxInSubtypes + 1];\r\n        }\r\n      } else {\r\n        if (subtypeRois[idxInSubtypes - 1]) {\r\n          nextRoi = subtypeRois[idxInSubtypes - 1];\r\n        }\r\n      }\r\n\r\n      // get index of next roi\r\n      let idxNextRoi = roiLayers[parentLayer].layer.regionRois.findIndex(\r\n        (element) => element === nextRoi\r\n      );\r\n      if (idxNextRoi === -1) {\r\n        return;\r\n      }\r\n\r\n      // set next roi selected\r\n      roiLayers[parentLayer].layer.regionRois[idxNextRoi].selected = true;\r\n      roiLayers[parentLayer].layer.regionRois[\r\n        idxNextRoi\r\n      ].selectedWithKey = true;\r\n\r\n      // set selected roi to not selected\r\n      if (idxNextRoi !== idxSelRoi) {\r\n        roiLayers[parentLayer].layer.regionRois[idxSelRoi].selected = false;\r\n        roiLayers[parentLayer].layer.regionRois[\r\n          idxSelRoi\r\n        ].selectedWithKey = false;\r\n      }\r\n    }\r\n  };\r\n\r\n  selectNewFile = (dir) => {\r\n    const { project, structures, selectedLayer } = this.props;\r\n\r\n    let visibleFiles = project.files;\r\n    if (structures[selectedLayer].classificationSubtype) {\r\n      visibleFiles = project.files.filter(\r\n        (element) => element.classId === structures[selectedLayer].id\r\n      );\r\n    }\r\n\r\n    // get index of currently selected file\r\n    let idx = visibleFiles.findIndex((element) => element.selectedInGallery);\r\n    // make file selectedIngallery true and other files false\r\n    visibleFiles.forEach((f) => {\r\n      f.selectedInGallery = false;\r\n    });\r\n    if (dir === \"right\" && project.files[idx + 1]) {\r\n      visibleFiles[idx + 1].selectedInGallery = true;\r\n      // check if change page\r\n      if (idx === (this.state.page + 1) * this.state.rowsPerPage - 1) {\r\n        this.setPage(this.state.page + 2);\r\n      }\r\n    } else if (dir === \"left\" && project.files[idx - 1]) {\r\n      visibleFiles[idx - 1].selectedInGallery = true;\r\n      // check if change page\r\n      if (idx % this.state.rowsPerPage === 0) {\r\n        this.setPage(this.state.page);\r\n      }\r\n    }\r\n  };\r\n\r\n  deleteSelectedRoi = () => {\r\n    const { selectedLayer, roiLayers, structures } = this.props;\r\n    // remove selected roi from roilayer\r\n\r\n    // if not classification structure\r\n    if (!structures[selectedLayer].classificationSubtype) {\r\n      // get index of selected roi\r\n      let idx = roiLayers[selectedLayer].layer.regionRois.findIndex(\r\n        (element) => element.selected\r\n      );\r\n      // adjust annotation count\r\n      if (\r\n        this.state.automaticTraining &&\r\n        roiLayers[selectedLayer].layer.regionRois[idx].isSubtype &&\r\n        !roiLayers[selectedLayer].layer.regionRois[idx].aiAnnotated\r\n      ) {\r\n        this.props.tiles.setStrAnnoCount(\r\n          roiLayers[selectedLayer].layer.regionRois[idx].structureId,\r\n          -1\r\n        );\r\n      }\r\n      // delete selected roi\r\n      roiLayers[selectedLayer].layer.regionRois.splice(idx, 1);\r\n      // make next roi selected true\r\n      if (roiLayers[selectedLayer].layer.regionRois[idx]) {\r\n        roiLayers[selectedLayer].layer.regionRois[idx].selected = true;\r\n        roiLayers[selectedLayer].layer.regionRois[idx].selectedWithKey = true;\r\n      }\r\n    }\r\n\r\n    // if classification structure\r\n    if (structures[selectedLayer].classificationSubtype) {\r\n      let parentLayer = getParentIndexLayer(\r\n        structures[selectedLayer],\r\n        structures\r\n      );\r\n      // get index of selected roi\r\n      let idx = roiLayers[parentLayer].layer.regionRois.findIndex(\r\n        (element) => element.selected\r\n      );\r\n      // delete selected roi\r\n      roiLayers[parentLayer].layer.regionRois.splice(idx, 1);\r\n      // get index of next subtype roi\r\n      let childLabels = []; // all subtypenames\r\n      this.findChilds(structures[selectedLayer]).forEach((element) => {\r\n        childLabels.push(element.label);\r\n      });\r\n      let idxNext = 0; // index of next subtype\r\n      // search for next roi that has is same subtype or subsubtype, ...\r\n      for (\r\n        let i = idx;\r\n        i < roiLayers[parentLayer].layer.regionRois.length;\r\n        i++\r\n      ) {\r\n        if (\r\n          childLabels.includes(\r\n            roiLayers[parentLayer].layer.regionRois[i].subtypeName\r\n          ) ||\r\n          roiLayers[parentLayer].layer.regionRois[i].subtypeName ===\r\n            structures[selectedLayer].label\r\n        ) {\r\n          idxNext = i;\r\n          break;\r\n        }\r\n      }\r\n      // make next roi of subtype selected true\r\n      if (roiLayers[parentLayer].layer.regionRois[idxNext]) {\r\n        roiLayers[parentLayer].layer.regionRois[idxNext].selected = true;\r\n        roiLayers[parentLayer].layer.regionRois[idxNext].selectedWithKey = true;\r\n      }\r\n    }\r\n\r\n    this.forceUpdate();\r\n  };\r\n\r\n  handleChangePage = (page, direction) => {\r\n    const { selectedLayer, structures } = this.props;\r\n    // change page\r\n\r\n    // change page with key shortcuts\r\n    if (direction === \"down\") {\r\n      page = this.state.page + 1;\r\n    } else if (direction === \"up\") {\r\n      page = this.state.page - 1;\r\n      page = page < 0 ? 0 : page;\r\n    } else {\r\n      page = direction;\r\n    }\r\n\r\n    // set context page\r\n    if (this.props.showGallery) {\r\n      this.props.tiles.setPage(structures[selectedLayer].id, page);\r\n    } else {\r\n      this.props.tiles.setTilePage(structures[selectedLayer].id, page);\r\n    }\r\n\r\n    this.props.onGallerychangePage();\r\n    this.setState({ page });\r\n    this.props.tiles.setPageIndex(page);\r\n\r\n    // prevent loading first roi on each page if changing multiple pages fast\r\n    if (this.allImagesLoaded()) {\r\n      this.setObjectToLoad(true);\r\n    } else {\r\n      let structureId = structures[selectedLayer].id;\r\n      setTimeout(this.checkIfLoadNewObject, 2000, page, structureId);\r\n    }\r\n\r\n    // scroll to top after change page\r\n    this.scrollToTop();\r\n    this.forceUpdate();\r\n  };\r\n\r\n  checkIfLoadNewObject = (pg, prevStr) => {\r\n    const { selectedLayer, structures } = this.props;\r\n    let structureId = structures[selectedLayer].id;\r\n    if (pg === this.state.page && prevStr === structureId) {\r\n      // load object if not changed page for 2 seconds\r\n      this.setObjectToLoad(true);\r\n    } else {\r\n      // do not load object from skipped pages\r\n    }\r\n  };\r\n\r\n  scrollToTop = () => {\r\n    // scroll to top --> eg. if change page\r\n    var el = document.getElementById(\"galleryWindow\");\r\n    el.scrollTop = 0;\r\n  };\r\n\r\n  handleChangeRowsPerPage = (event) => {\r\n    // change number of elements on one page\r\n    this.setState({ rowsPerPage: event.target.value });\r\n  };\r\n\r\n  setPage = (p) => {\r\n    const { selectedLayer, structures } = this.props;\r\n    // set page specific page p\r\n\r\n    this.pageInput = \"\";\r\n    // if p is not a number\r\n    if (!p) {\r\n      this.forceUpdate();\r\n      return;\r\n    }\r\n\r\n    // if pg is negative\r\n    let pg = p - 1;\r\n    if (pg < 0) {\r\n      this.forceUpdate();\r\n      return;\r\n    }\r\n\r\n    // if pg is out of range --> go to last page\r\n    let numObjsInLayer = this.getNumberOfElements();\r\n    if (this.state.rowsPerPage * pg > numObjsInLayer) {\r\n      pg = Math.ceil(numObjsInLayer / this.state.rowsPerPage) - 1;\r\n    }\r\n\r\n    // set context page\r\n    if (this.props.showGallery) {\r\n      this.props.tiles.setPage(structures[selectedLayer].id, pg);\r\n    } else {\r\n      this.props.tiles.setTilePage(structures[selectedLayer].id, pg);\r\n    }\r\n\r\n    this.props.onGallerychangePage();\r\n    this.setState({ page: pg });\r\n    this.props.tiles.setPageIndex(pg);\r\n    this.setObjectToLoad(true);\r\n    this.scrollToTop();\r\n    this.forceUpdate();\r\n  };\r\n\r\n  getNumberOfElements = () => {\r\n    const { selectedLayer, roiLayers, structures, project, galleryType } =\r\n      this.props;\r\n    // return number of objects of selected structure\r\n    let numEls = 0;\r\n    if (galleryType !== \"FilesGallery\") {\r\n      if (!structures[selectedLayer].classificationSubtype) {\r\n        numEls = roiLayers[selectedLayer].layer.regionRois.length;\r\n      } else {\r\n        let idx = this.findParentIndex();\r\n        numEls = roiLayers[idx].layer.regionRois.filter(\r\n          (element) => element.subtypeName === structures[idx].label\r\n        ).length;\r\n      }\r\n    } else {\r\n      if (!structures[selectedLayer].classificationSubtype) {\r\n        numEls = project.files.length;\r\n      } else {\r\n        numEls = project.files.filter(\r\n          (element) =>\r\n            element.classId && element.classId == structures[selectedLayer].id\r\n        ).length;\r\n      }\r\n    }\r\n    return numEls;\r\n  };\r\n\r\n  classifyImageWithKey = (classId) => {\r\n    const { galleryType } = this.props;\r\n    // classify roi / file\r\n    if (galleryType !== \"FilesGallery\") {\r\n      this.classifyRoiWithKey(classId);\r\n    } else {\r\n      this.classifyFileWithKey(classId);\r\n    }\r\n\r\n    // update\r\n    this.forceUpdate();\r\n    window.forceSidebarUpdate();\r\n  };\r\n\r\n  classifyRoiWithKey = (classId) => {\r\n    const { roiLayers, selectedLayer, structures } = this.props;\r\n    // classify roi with key shortcut (0 is parent, 1 is first subtype, ...)\r\n\r\n    let layer = selectedLayer;\r\n    if (structures[selectedLayer].classificationSubtype) {\r\n      layer = getParentIndexLayer(structures[selectedLayer], structures);\r\n    }\r\n    // get all subtypes / childs\r\n    let childs = this.findChilds(structures[selectedLayer]);\r\n    // get index of selected roi that gets classified\r\n    let idx = roiLayers[layer].layer.regionRois.findIndex(\r\n      (element) => element.selected\r\n    );\r\n\r\n    // make adjustments for point-counting module\r\n    if (this.props.project.type.includes(\"HistoPointCounting\")) {\r\n      // if classify tile to parent --> return\r\n      if (classId === 0) {\r\n        return;\r\n      }\r\n    }\r\n\r\n    // classify roi\r\n    let roiWasSubtype =\r\n      roiLayers[layer].layer.regionRois[idx].isSubtype &&\r\n      !roiLayers[layer].layer.regionRois[idx].aiAnnotated;\r\n    let bufferRoiId = roiLayers[layer].layer.regionRois[idx].structureId;\r\n\r\n    // set properties of roi for classification if classifying to subtype\r\n    if (childs[classId - 1]) {\r\n      roiLayers[layer].layer.regionRois[idx].color = childs[classId - 1].color;\r\n      roiLayers[layer].layer.regionRois[idx].isSubtype = true;\r\n      roiLayers[layer].layer.regionRois[idx].isAnnotated = true;\r\n      roiLayers[layer].layer.regionRois[idx].isLabeled = true;\r\n      roiLayers[layer].layer.regionRois[idx].subtypeName =\r\n        childs[classId - 1].label;\r\n      roiLayers[layer].layer.regionRois[idx].structureId =\r\n        childs[classId - 1].id;\r\n      roiLayers[layer].layer.regionRois[idx].isSelObj = false;\r\n      roiLayers[layer].layer.regionRois[idx].aiAnnotated = false;\r\n    }\r\n\r\n    // set properties of roi for classification if classifying to parent\r\n    if (classId === 0) {\r\n      roiLayers[layer].layer.regionRois[idx].color =\r\n        structures[selectedLayer].color;\r\n      roiLayers[layer].layer.regionRois[idx].isSubtype = false;\r\n      roiLayers[layer].layer.regionRois[idx].isAnnotated = false;\r\n      roiLayers[layer].layer.regionRois[idx].isLabeled = false;\r\n      roiLayers[layer].layer.regionRois[idx].subtypeName =\r\n        structures[selectedLayer].label;\r\n      roiLayers[layer].layer.regionRois[idx].structureId =\r\n        structures[selectedLayer].id;\r\n      roiLayers[layer].layer.regionRois[idx].isSelObj = false;\r\n      roiLayers[layer].layer.regionRois[idx].aiAnnotated = false;\r\n    }\r\n\r\n    // increase annotationCount\r\n    let currentRoi = roiLayers[layer].layer.regionRois[idx];\r\n    if (\r\n      this.state.automaticTraining &&\r\n      !structures[selectedLayer].classificationSubtype\r\n    ) {\r\n      if (currentRoi.isSubtype && !roiWasSubtype) {\r\n        // if classify unlabeled to labeled\r\n        this.props.tiles.setStrAnnoCount(currentRoi.structureId, 1);\r\n      } else if (currentRoi.isSubtype && roiWasSubtype) {\r\n        // if classify labeled to labeled\r\n        this.props.tiles.setStrAnnoCount(currentRoi.structureId, 1);\r\n        this.props.tiles.setStrAnnoCount(bufferRoiId, -1);\r\n      } else if (roiWasSubtype) {\r\n        // if classify labeled to unlabeled\r\n        this.props.tiles.setStrAnnoCount(bufferRoiId, -1);\r\n      }\r\n    }\r\n\r\n    // start training automatically if enough annotations\r\n    if (this.state.automaticTraining) {\r\n      let childs = this.findChilds(structures[selectedLayer]);\r\n      let structureId = structures[selectedLayer].id;\r\n      let annotations =\r\n        this.getNuberChildRois(childs) -\r\n        this.props.tiles.getStrAnnoCountElement(structureId);\r\n      if (annotations >= this.state.startData && !this.props.alruns) {\r\n        let enoughAnnos = this.enoughAnnotations(childs);\r\n\r\n        if (enoughAnnos) {\r\n          this.props.tiles.setAnnotationCount(0);\r\n          this.props.tiles.setParentAnnoCount(\r\n            structures[selectedLayer].id,\r\n            annotations\r\n          );\r\n          this.props.startAutomaticTraining();\r\n        } else {\r\n          // give warning if too less annotations\r\n          this.giveWarning();\r\n        }\r\n      }\r\n    }\r\n  };\r\n\r\n  classifyFileWithKey = (classId) => {\r\n    const { selectedLayer, structures, project } = this.props;\r\n    // classify file with key shortcut (0 is parent, 1 is first subtype, ...)\r\n\r\n    // get all subtypes / childs\r\n    let parentStructure = structures[selectedLayer];\r\n    if (structures[selectedLayer].classificationSubtype) {\r\n      parentStructure = structures.filter(\r\n        (element) => element.id === structures[selectedLayer].parentId\r\n      )[0];\r\n    }\r\n    let childs = this.findChilds(parentStructure);\r\n    // get index of selected roi that gets classified\r\n    let idx = project.files.findIndex((element) => element.selectedInGallery);\r\n    // assign classId\r\n    if (childs[classId - 1]) {\r\n      project.files[idx].classId = childs[classId - 1].id;\r\n    }\r\n  };\r\n\r\n  classifyTilesGalleryWithKey = (classId) => {\r\n    const { roiLayers, selectedLayer, structures } = this.props;\r\n    const { page } = this.state;\r\n    // classify tile with key shortcut --> function was made for project tilestool\r\n\r\n    // get all subtypes / childs\r\n    let childs = this.findChilds(structures[selectedLayer]);\r\n\r\n    // set properties of roi for classification\r\n    if (childs[classId - 1]) {\r\n      roiLayers[selectedLayer].layer.regionRois[page].color =\r\n        childs[classId - 1].color;\r\n      roiLayers[selectedLayer].layer.regionRois[page].isSubtype = true;\r\n      roiLayers[selectedLayer].layer.regionRois[page].isAnnotated = true;\r\n      roiLayers[selectedLayer].layer.regionRois[page].subtypeName =\r\n        childs[classId - 1].label;\r\n      roiLayers[selectedLayer].layer.regionRois[page].structureId =\r\n        childs[classId - 1].id;\r\n    }\r\n\r\n    // update\r\n    this.forceUpdate();\r\n  };\r\n\r\n  setPageSelectedRoi = (roi) => {\r\n    const { roiLayers, selectedLayer, structures } = this.props;\r\n    // select correct page after shortcut from viewer in project tilestool\r\n\r\n    // index of element will be page to select (beacuse only one image per page)\r\n    let p = roiLayers[selectedLayer].layer.regionRois.findIndex(\r\n      (element) => element === roi\r\n    );\r\n    // set context page\r\n    if (this.props.showGallery) {\r\n      this.props.tiles.setPage(structures[selectedLayer].id, p);\r\n    } else {\r\n      this.props.tiles.setTilePage(structures[selectedLayer].id, p);\r\n    }\r\n\r\n    this.setObjectToLoad(false, true);\r\n    this.setState({ page: p });\r\n  };\r\n\r\n  giveWarning = () => {\r\n    // show warning snackbar if not enought annotations for training\r\n    if (this.enoughAnnosCount < 2) {\r\n      this.props.trainingWarning(\"tooFewAnnotations\");\r\n      this.enoughAnnosCount = this.enoughAnnosCount + 1;\r\n    }\r\n  };\r\n\r\n  handleDivMouseDown = (e) => {\r\n    // set that mouse is down\r\n    this.props.tiles.setIsMousedown(true);\r\n    if (this.props.tiles.getOnPageInput()) {\r\n      return;\r\n    } else {\r\n      // // disable page input textfield\r\n      // document.getElementById(\"pageInput\").disabled = true;\r\n      if (document.getElementById(\"nAnnos\") !== null) {\r\n        document.getElementById(\"nAnnos\").disabled = true;\r\n      }\r\n      if (document.getElementById(\"roiComment\") !== null) {\r\n        document.getElementById(\"roiComment\").disabled = true;\r\n      }\r\n    }\r\n    if (!this.props.showGallery) {\r\n      return;\r\n    }\r\n    e.preventDefault();\r\n  };\r\n\r\n  handleDivMouseUp = (e) => {\r\n    const { tools, activeTool } = this.props;\r\n    // set that mouse is up\r\n    this.props.tiles.setIsMousedown(false);\r\n    if (\r\n      !this.props.tiles.getIsOnImage() ||\r\n      this.props.tiles.getIsInOtherImage()\r\n    ) {\r\n      // if finish drawing on other image or outside of image\r\n      if (tools[activeTool]) {\r\n        let p1;\r\n        let prps = this.props.tiles.getRoiProps();\r\n        tools[activeTool].mouse({\r\n          event: e,\r\n          p: p1,\r\n          color: prps.color,\r\n          subtype: prps.isSubtype,\r\n          name: prps.subtypeName,\r\n          positionInRoiLayer: -2,\r\n          fullyLoaded: true,\r\n        });\r\n        this.props.tiles.setIsInOtherImage(false);\r\n        this.forceUpdate();\r\n      }\r\n    }\r\n  };\r\n\r\n  getNuberChildRois = (childs) => {\r\n    // get number of annotations of all childs (from context)\r\n    let n = 0;\r\n    childs.forEach((element) => {\r\n      n = n + this.props.tiles.getStrAnnoCountElement(element.id);\r\n    });\r\n    return n;\r\n  };\r\n\r\n  enoughAnnotations = (childs) => {\r\n    // check if enough annotations for training of dl model (at least one class with 5 annotations and one other class with 1 annotation)\r\n    let minFive = false;\r\n    let twoAnnotated = 0;\r\n    childs.forEach((element) => {\r\n      // check if minimum of five in one class\r\n      if (this.props.tiles.getStrAnnoCountElement(element.id) >= 5) {\r\n        minFive = true;\r\n      }\r\n      // check if two classes with at least one element\r\n      if (this.props.tiles.getStrAnnoCountElement(element.id) >= 1) {\r\n        twoAnnotated = twoAnnotated + 1;\r\n      }\r\n    });\r\n\r\n    // if one class with at least five and one other class with at least one annotation --> enough annotations for training\r\n    let enough = false;\r\n    if (minFive && twoAnnotated >= 2) {\r\n      enough = true;\r\n    }\r\n    return enough;\r\n  };\r\n\r\n  isRoiSubtype = (roi) => {\r\n    const { structures, selectedLayer } = this.props;\r\n    if (\r\n      roi.subtypeName === structures[selectedLayer].label &&\r\n      roi.color === structures[selectedLayer].color\r\n    ) {\r\n      // roi is element of selected structure\r\n      return true;\r\n    }\r\n\r\n    // calculate childs of structure and check labels of childs\r\n    let childLabels = [];\r\n    let childColors = [];\r\n    this.findChilds(structures[selectedLayer]).forEach((element) => {\r\n      childLabels.push(element.label);\r\n      childColors.push(element.color);\r\n    });\r\n\r\n    if (\r\n      roi.isSubtype &&\r\n      childLabels.includes(roi.subtypeName) &&\r\n      childColors.includes(roi.color)\r\n    ) {\r\n      // roi is child of selected structure\r\n      return true;\r\n    } else {\r\n      return false;\r\n    }\r\n  };\r\n\r\n  isFileSubtype = (fileClassId) => {\r\n    const { structures, selectedLayer } = this.props;\r\n    if (fileClassId == structures[selectedLayer].id) {\r\n      // roi is element of selected structure\r\n      return true;\r\n    }\r\n  };\r\n\r\n  findChilds = (subType) => {\r\n    const { structures } = this.props;\r\n    // return direct classification subtypes of selected structure\r\n    return structures.filter(\r\n      (element) =>\r\n        element.subtypeLevel === subType.subtypeLevel + 1 &&\r\n        element.parentId === subType.id &&\r\n        element.classificationSubtype\r\n    );\r\n  };\r\n\r\n  setProgress = (line) => {\r\n    // get acc and epochs of training from backend messages\r\n    let epochs = \"\";\r\n    let acc = \"\";\r\n    // get epoch in training\r\n    if (line.includes(\"Epoch\")) {\r\n      epochs = line.split(\"Epoch\")[1];\r\n      if (epochs.includes(\"early stopping\")) {\r\n        // if early stopping save accuracy of training in local storage and graph\r\n        epochs = \"50/50\";\r\n        this.props.tiles.pushGraphAcc(this.validationAcc);\r\n        this.props.persistentStorage.save(\r\n          \"accGraphObject\",\r\n          this.props.tiles.getGraphAcc()\r\n        );\r\n      } else if (epochs.includes(\"50/50\")) {\r\n        // if training finished save accuracy of training in local storage and graph\r\n        epochs = \"50/50\";\r\n        this.props.tiles.pushGraphAcc(this.validationAcc);\r\n        this.props.persistentStorage.save(\r\n          \"accGraphObject\",\r\n          this.props.tiles.getGraphAcc()\r\n        );\r\n      }\r\n      // set epochs for frontend text\r\n      this.setState({ progressText: epochs });\r\n    }\r\n    // get acc in training\r\n    if (line.includes(\"val_accuracy\")) {\r\n      acc = line.split(\"val_accuracy: \")[1];\r\n      this.validationAcc = parseFloat(acc) * 100;\r\n      this.setState({ trainingAcc: acc });\r\n    }\r\n  };\r\n\r\n  filterObjects = (element) => {\r\n    if (!this.props.project.type.includes(\"HistoPointCounting\")) {\r\n      return true;\r\n    } else {\r\n      // only show classified tiles and tiles that are not classified as \"leer\" in point counting module\r\n      return element.isSubtype && element.subtypeName !== \"leer [leer]\";\r\n    }\r\n  };\r\n\r\n  renderCroppedImage = (roi, context, id) => {\r\n    const { galleryImageSize } = this.props.projectContext;\r\n    return (\r\n      <CroppedImage\r\n        componentRef={(c) => (this.tile[id] = c)}\r\n        onRefresh={() => this.forceUpdate()}\r\n        ome={this.props.ome}\r\n        histogramConfig={this.props.histogramConfig}\r\n        visibleImage={this.visibleImage}\r\n        coloredImages={this.coloredImages}\r\n        roI={roi}\r\n        structures={this.props.structures}\r\n        selectedLayer={this.props.selectedLayer}\r\n        canvasWidth={galleryImageSize}\r\n        gallery={this.props.gallery}\r\n        contour={this.state.drawContour}\r\n        activeTool={this.props.activeTool}\r\n        tools={this.props.tools}\r\n        number={context.state.number}\r\n        fileId={this.props.fileId}\r\n        //contx={this.props.contx}\r\n        visImgs={this.props.visImgs}\r\n        index={id}\r\n        indexOffset={this.state.page * this.state.rowsPerPage}\r\n        page={this.pageIndex}\r\n        roiLayers={this.props.roiLayers}\r\n        classificationId={this.classificationId}\r\n        fromAI={true}\r\n        drawLayer={this.props.drawLayer}\r\n        updateGallery={this.updateGallery}\r\n        startData={this.state.startData}\r\n        alruns={this.props.alruns}\r\n        setAlruns={this.props.setAlruns}\r\n        z={this.state.z}\r\n        t={this.state.t}\r\n        showZStackBar={this.props.showZStackBar}\r\n        automaticTraining={this.state.automaticTraining}\r\n        startAutomaticTraining={this.props.startAutomaticTraining}\r\n        trainingWarning={this.props.trainingWarning}\r\n        setFUllyAnnotated={this.props.setFUllyAnnotated}\r\n        setAnnotated={this.props.setAnnotated}\r\n        showGallery={this.props.showGallery}\r\n        drawCrosshair={this.state.drawCrosshair}\r\n        crosshairColor={this.state.crosshairColor}\r\n        crosshairOpacity={this.state.crosshairOpacity}\r\n        crosshairLineWidth={this.state.crosshairLineWidth}\r\n        scroll={this.scroll}\r\n        setSelectedWithKey={this.setSelectedWithKey}\r\n        selectedWithKey={this.state.selectedWithKey}\r\n        isBrightfield={this.state.isBrightfield}\r\n        objectToLoad={this.state.objectToLoad}\r\n        setObjectToLoad={this.setObjectToLoad}\r\n        giveWarning={this.giveWarning}\r\n        project={this.props.project}\r\n        globalZ={this.props.globalZ}\r\n        opacity={this.props.opacity}\r\n      />\r\n    );\r\n  };\r\n\r\n  renderSceneImage = (file) => {\r\n    const { galleryImageSize } = this.props.projectContext;\r\n    return (\r\n      <SceneImage\r\n        files={this.props.project.files}\r\n        file={file}\r\n        imageSize={galleryImageSize}\r\n        structures={this.props.structures}\r\n        selectedLayer={this.props.selectedLayer}\r\n        classificationId={this.classificationId}\r\n        scroll={this.scroll}\r\n        updateGallery={this.updateGallery}\r\n        setSelectedWithKey={this.setSelectedWithKey}\r\n        selectedWithKey={this.state.selectedWithKey}\r\n        showFileNames={this.state.showFileNames}\r\n        galleryMounted={this.state.galleryMounted}\r\n      />\r\n    );\r\n  };\r\n\r\n  render() {\r\n    const {\r\n      structures,\r\n      selectedLayer,\r\n      roiLayers,\r\n      project,\r\n      tools,\r\n      galleryType,\r\n    } = this.props;\r\n    const { classes, ...propsWithoutClasses } = this.props;\r\n    const { page, rowsPerPage } = this.state;\r\n    const { galleryImageSize } = this.props.projectContext;\r\n\r\n    let params = {\r\n      classificationFiles: project.files.slice(\r\n        page * rowsPerPage,\r\n        page * rowsPerPage + rowsPerPage\r\n      ),\r\n    };\r\n    tools.iam_ai_inference?.onParameterChange(params);\r\n\r\n    // tooltip describes how many annotations it takes for automatic start of training\r\n    let toolTipCircularProgress =\r\n      \"if (\" +\r\n      this.state.startData +\r\n      \"/\" +\r\n      this.state.startData +\r\n      \") training starts automatically\";\r\n\r\n    // calculate number of annotations for progess in bottom right (circular progress)\r\n    let childs = this.findChilds(structures[selectedLayer]);\r\n    let structureId = structures[selectedLayer].id;\r\n    let annotations =\r\n      this.getNuberChildRois(childs) -\r\n      this.props.tiles.getStrAnnoCountElement(structureId);\r\n    let progress = (annotations / this.state.startData) * 100;\r\n    if (annotations > this.state.startData) {\r\n      progress = 100;\r\n    }\r\n\r\n    // get subtypes / childs of selected structure for classification\r\n    let childsGallery = this.findChilds(structures[selectedLayer]);\r\n    if (!this.props.project.type.includes(\"HistoPointCounting\")) {\r\n      // add parent / selected layer to childs / subtypes\r\n      childsGallery.unshift(structures[selectedLayer]);\r\n    }\r\n\r\n    // calculate rois that will be displayed in gallery depending on selected structure\r\n    let roisForImages = [];\r\n    if (!structures[selectedLayer].classificationSubtype) {\r\n      // show all rois if parent structure (exception --> point counting module (look at filterObjects function))\r\n      roisForImages = roiLayers[selectedLayer].layer.regionRois.filter(\r\n        (element) => this.filterObjects(element)\r\n      );\r\n    } else {\r\n      // only show subtype rois if subtype structure\r\n      roisForImages = roiLayers[\r\n        getParentIndexLayer(structures[selectedLayer], structures)\r\n      ].layer.regionRois.filter((element) => this.isRoiSubtype(element));\r\n    }\r\n\r\n    // calculate files that will be displayed in gallery depending on selected structure\r\n    let displayedFiles = [];\r\n    if (!structures[selectedLayer].classificationSubtype) {\r\n      // show all files if parent structure\r\n      displayedFiles = project.files;\r\n    } else {\r\n      // only show subtype rois if subtype structure\r\n      displayedFiles = project.files.filter((element) =>\r\n        this.isFileSubtype(element.classId)\r\n      );\r\n    }\r\n\r\n    return (\r\n      <div\r\n        style={{\r\n          margin: 0,\r\n          marginRight: \"5px\",\r\n          background: \"#fff\",\r\n          height: \"100%\",\r\n          width: \"100%\",\r\n        }}\r\n        onMouseDown={this.handleDivMouseDown}\r\n        onMouseUp={this.handleDivMouseUp}\r\n        onContextMenu={(e) => {\r\n          e.preventDefault();\r\n        }}\r\n      >\r\n        <GalleryToolBoxes\r\n          childsGallery={childsGallery}\r\n          childs={childs}\r\n          classificationId={this.classificationId}\r\n          page={this.state.page}\r\n          trainingAcc={this.state.trainingAcc}\r\n          startData={this.state.startData}\r\n          progressText={this.state.progressText}\r\n          galleryType={galleryType}\r\n          setStartData={this.setStartData}\r\n          setDrawContour={this.setDrawContour}\r\n          setShowFileNames={this.setShowFileNames}\r\n          setAutomaticTraining={this.setAutomaticTraining}\r\n          setDrawCrosshair={this.setDrawCrosshair}\r\n          setCrosshairColor={this.setCrosshairColor}\r\n          setCrosshairOpacity={this.setCrosshairOpacity}\r\n          setCrosshairLineWidth={this.setCrosshairLineWidth}\r\n          {...propsWithoutClasses}\r\n        />\r\n\r\n        {this.props.galleryType == \"FilesGallery\" && (\r\n          <Grid\r\n            container\r\n            justifyContent=\"center\"\r\n            spacing={2}\r\n            style={{\r\n              overflowY: \"auto\",\r\n              overflowX: \"hidden\",\r\n              height: \"calc(100% - 80px)\",\r\n              width: \"calc(100% - 330px)\",\r\n              marginLeft: \"330px\",\r\n              marginTop: \"10px\",\r\n              alignContent: \"flex-start\",\r\n            }}\r\n            id=\"galleryWindow\"\r\n            onScroll={() => {\r\n              // if scrolling manually set selected with key to false --> no more automatic scrolling\r\n              if (this.state.selectedWithKey) {\r\n                this.setState({ selectedWithKey: false });\r\n              }\r\n            }}\r\n          >\r\n            {displayedFiles\r\n              .slice(page * rowsPerPage, page * rowsPerPage + rowsPerPage)\r\n              .map((file, id) => {\r\n                return (\r\n                  <Grid\r\n                    item\r\n                    style={{\r\n                      width:\r\n                        galleryImageSize !== -1 ? galleryImageSize : \"100%\",\r\n                      height: \"auto\",\r\n                    }}\r\n                    key={id}\r\n                  >\r\n                    {this.renderSceneImage(file)}\r\n                  </Grid>\r\n                );\r\n              })}\r\n          </Grid>\r\n        )}\r\n\r\n        {this.props.galleryType == \"AnnotationGallery\" && (\r\n          <Grid\r\n            item\r\n            xs={12}\r\n            style={{\r\n              overflowY: \"auto\",\r\n              overflowX: \"hidden\",\r\n              maxHeigth: \"400px\",\r\n              height: \"calc(100% - 70px)\",\r\n              marginLeft: \"330px\",\r\n            }}\r\n            id=\"galleryWindow\"\r\n            onScroll={() => {\r\n              // if scrolling manually set selected with key to false --> no more automatic scrolling\r\n              if (this.state.selectedWithKey) {\r\n                this.setState({ selectedWithKey: false });\r\n              }\r\n            }}\r\n          >\r\n            <Grid\r\n              container\r\n              justifyContent=\"center\"\r\n              spacing={1}\r\n              style={{\r\n                maxHeight: \"calc(100vh - 360px)\",\r\n                padding: \"20px 20px\",\r\n              }}\r\n            >\r\n              {roisForImages\r\n                .slice(page * rowsPerPage, page * rowsPerPage + rowsPerPage)\r\n                .map((roi, id) => {\r\n                  // give roi correct color\r\n                  let clr = structures[selectedLayer].color;\r\n                  if (roi.color === \"#FFFFFF\") {\r\n                    roi.color = clr;\r\n                  }\r\n\r\n                  return (\r\n                    <Grid style={{ margin: \"3px\" }} key={id}>\r\n                      <div\r\n                        className={classes.imgOuter}\r\n                        style={{ padding: \"3px\", position: \"relative\" }}\r\n                      >\r\n                        {roi.isLabeled || !roi.isSelObj ? (\r\n                          <span></span>\r\n                        ) : (\r\n                          <div\r\n                            className={`${classes.aiLabel} aiLabel`}\r\n                            style={{\r\n                              border: \"3px solid \" + roi.color,\r\n                            }}\r\n                          >\r\n                            AI\r\n                          </div>\r\n                        )}\r\n                        {!this.props.showGallery && (\r\n                          <div\r\n                            style={{\r\n                              border: \"3px solid\" + roi.color,\r\n                              position: \"absolute\",\r\n                              zIndex: 99999,\r\n                              top: \"5px\",\r\n                              right: \"10px\",\r\n                            }}\r\n                          >\r\n                            {roi.tileName}\r\n                          </div>\r\n                        )}\r\n                        {this.renderCroppedImage(roi, this.props.tiles, id, 4)}\r\n                      </div>\r\n                    </Grid>\r\n                  );\r\n                })}\r\n            </Grid>\r\n          </Grid>\r\n        )}\r\n\r\n        <div style={{ marginTop: \"10px\" }}>\r\n          <TablePagination\r\n            style={{ display: \"inline-block\" }}\r\n            labelRowsPerPage=\"Images per page:\"\r\n            rowsPerPageOptions={this.getRowsPerPageOptionsForProject()}\r\n            component=\"div\"\r\n            count={this.state.elementCount}\r\n            rowsPerPage={this.state.rowsPerPage}\r\n            page={this.state.page}\r\n            backIconButtonProps={{\r\n              \"aria-label\": \"Previous Page\",\r\n            }}\r\n            nextIconButtonProps={{\r\n              \"aria-label\": \"Next Page\",\r\n            }}\r\n            onPageChange={this.handleChangePage}\r\n            onRowsPerPageChange={this.handleChangeRowsPerPage}\r\n            labelDisplayedRows={() =>\r\n              `Page ${this.state.page + 1} of ${Math.ceil(\r\n                this.state.elementCount / this.state.rowsPerPage\r\n              )} (${this.state.elementCount} objects)`\r\n            }\r\n          />\r\n\r\n          {this.state.automaticTraining &&\r\n            !this.props.structures[this.props.selectedLayer]\r\n              .classificationSubtype && (\r\n              <Tooltip\r\n                disableInteractive\r\n                title={toolTipCircularProgress}\r\n                placement=\"top\"\r\n              >\r\n                <div\r\n                  style={{\r\n                    position: \"relative\",\r\n                    display: \"inline-block\",\r\n                    width: \"55px\",\r\n                    height: \"55px\",\r\n                    float: \"right\",\r\n                    margin: \"0px 20px 0px 0px\",\r\n                    fontFamily: \"Roboto, Helvetica, Arial, sans-serif\",\r\n                    fontSize: \"13px\",\r\n                    fontWeight: \"bold\",\r\n                    textAlign: \"center\",\r\n                    paddingTop: \"17px\",\r\n                  }}\r\n                >\r\n                  {annotations + \"/\" + this.state.startData}\r\n                  <CircularProgress\r\n                    variant=\"determinate\"\r\n                    size={55}\r\n                    value={progress}\r\n                    style={{\r\n                      position: \"absolute\",\r\n                      zIndex: 10,\r\n                      top: 0,\r\n                      left: 0,\r\n                    }}\r\n                  />\r\n                </div>\r\n              </Tooltip>\r\n            )}\r\n        </div>\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nGallery.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  componentRef: PropTypes.func,\r\n  roiLayers: PropTypes.array,\r\n  ome: PropTypes.object,\r\n  fileId: PropTypes.string,\r\n  projectId: PropTypes.string,\r\n  structures: PropTypes.array,\r\n  selectedLayer: PropTypes.number,\r\n  visibleImage: PropTypes.array,\r\n  coloredImages: PropTypes.array,\r\n  histogramConfig: PropTypes.object,\r\n  gallery: PropTypes.func,\r\n  activeTool: PropTypes.string,\r\n  tools: PropTypes.array,\r\n  visImgs: PropTypes.array,\r\n  selectedObjects: PropTypes.object,\r\n  drawLayer: PropTypes.object,\r\n  saveChangesGallery: PropTypes.func,\r\n  applyDL: PropTypes.func,\r\n  test: PropTypes.bool,\r\n  updateCount: PropTypes.number,\r\n  alruns: PropTypes.bool,\r\n  setAlruns: PropTypes.func,\r\n  graphData: PropTypes.number,\r\n  updateViewer: PropTypes.func,\r\n  onGallerychangePage: PropTypes.func,\r\n  showZStackBar: PropTypes.bool,\r\n  // from withTiles\r\n  tiles: PropTypes.object,\r\n  globalZ: PropTypes.number,\r\n  opacity: PropTypes.number,\r\n  project: PropTypes.object,\r\n  viewerConfig: PropTypes.object,\r\n  persistentStorage: PropTypes.object,\r\n  showGallery: PropTypes.bool,\r\n  galleryType: PropTypes.string,\r\n  selObjs: PropTypes.bool,\r\n  updateProject: PropTypes.func,\r\n  commentLayer: PropTypes.object,\r\n  allRoiLayers: PropTypes.array,\r\n  startAutomaticTraining: PropTypes.func,\r\n  trainingWarning: PropTypes.func,\r\n  setFUllyAnnotated: PropTypes.func,\r\n  setAnnotated: PropTypes.func,\r\n  updateFileClasses: PropTypes.func,\r\n  projectContext: PropTypes.object,\r\n};\r\n\r\nexport default withAllViewerContexts(\r\n  withPersistentStorage(withTiles(withStyles(styles)(Gallery)))\r\n);\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n\r\nimport Slider from \"@mui/material/Slider\";\r\nimport MenuItem from \"@mui/material/MenuItem\";\r\nimport FormControl from \"@mui/material/FormControl\";\r\nimport Select from \"@mui/material/Select\";\r\nimport Radio from \"@mui/material/Radio\";\r\nimport RadioGroup from \"@mui/material/RadioGroup\";\r\nimport FormControlLabel from \"@mui/material/FormControlLabel\";\r\nimport { IconButton } from \"@mui/material\";\r\n\r\nimport VisibilityIcon from \"@mui/icons-material/Visibility\";\r\nimport LinkIcon from \"@mui/icons-material/Link\";\r\nimport LinkOffIcon from \"@mui/icons-material/LinkOff\";\r\n\r\nconst styles = {\r\n  root: {\r\n    display: \"flex\",\r\n    height: \"400px\",\r\n    position: \"absolute\",\r\n    top: \"33%\",\r\n    right: \"40px\",\r\n    width: \"150px\",\r\n    zIndex: 100,\r\n  },\r\n  formControl: {\r\n    minWidth: 100,\r\n    maxWidth: 100,\r\n  },\r\n  sliderDiv: {\r\n    right: \"3.5%\",\r\n    top: \"25%\",\r\n    width: \"80%\",\r\n    height: \"50%\",\r\n    position: \"inherit\",\r\n    textAlign: \"center\",\r\n  },\r\n  upperArea: {\r\n    top: \"0%\",\r\n    width: \"100%\",\r\n    height: \"25%\",\r\n    position: \"inherit\",\r\n  },\r\n  upperList: {\r\n    position: \"inherit\",\r\n    bottom: \"10%\",\r\n    right: \"3%\",\r\n    width: \"70%\",\r\n  },\r\n  lowerArea: {\r\n    top: \"75%\",\r\n    width: \"100%\",\r\n    height: \"25%\",\r\n    position: \"inherit\",\r\n  },\r\n  lowerList: {\r\n    position: \"inherit\",\r\n    top: \"10%\",\r\n    right: \"3%\",\r\n    width: \"70%\",\r\n  },\r\n  upFormcontrol: {\r\n    position: \"absolute\",\r\n    top: \"-10px\",\r\n    left: \"-27px\",\r\n  },\r\n  lowFormcontrol: {\r\n    position: \"absolute\",\r\n    top: \"168px\",\r\n    left: \"-27px\",\r\n  },\r\n  upButton: {\r\n    position: \"absolute\",\r\n    top: \"-4px\",\r\n    left: \"50px\",\r\n    color: \"#0673C1\",\r\n  },\r\n  lowButton: {\r\n    position: \"absolute\",\r\n    top: \"174px\",\r\n    left: \"50px\",\r\n    color: \"#0673C1\",\r\n  },\r\n  slider: {\r\n    float: \"right\",\r\n    color: \"#0673C1\",\r\n  },\r\n  chainButton: {\r\n    position: \"absolute\",\r\n    top: \"244px\",\r\n    left: \"14px\",\r\n  },\r\n};\r\n\r\nclass OverlaySlider extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n    if (props.componentRef) props.componentRef(this);\r\n    this.state = {\r\n      value: 100,\r\n      upperListValue: \"\",\r\n      lowerListValue: \"\",\r\n      checkedUp: false,\r\n      checkedLow: false,\r\n    };\r\n  }\r\n\r\n  componentDidMount() {\r\n    const {\r\n      activeFileId,\r\n      splitscreenFileIds,\r\n      fullscreenFileIds,\r\n      addFile,\r\n      setOpacity,\r\n    } = this.props;\r\n    let lowValue;\r\n\r\n    activeFileId === splitscreenFileIds[0]\r\n      ? (lowValue = splitscreenFileIds[1])\r\n      : (lowValue = splitscreenFileIds[0]);\r\n\r\n    if (fullscreenFileIds.length === 1) {\r\n      addFile(lowValue, 1);\r\n    } else {\r\n      addFile(activeFileId, 0);\r\n      addFile(lowValue, 1);\r\n    }\r\n\r\n    setOpacity(0, this.state.value);\r\n    setOpacity(1, 100 - this.state.value);\r\n\r\n    this.setState({\r\n      upperListValue: activeFileId,\r\n      lowerListValue: lowValue,\r\n      checkedUp: true,\r\n      init: false,\r\n    });\r\n  }\r\n\r\n  componentDidUpdate() {\r\n    const { activeFileId } = this.props;\r\n    const { checkedUp, checkedLow, upperListValue, lowerListValue } =\r\n      this.state;\r\n\r\n    if (\r\n      (checkedUp && upperListValue !== activeFileId) ||\r\n      (checkedLow && lowerListValue !== activeFileId)\r\n    ) {\r\n      this.update();\r\n    }\r\n  }\r\n\r\n  update = () => {\r\n    const { activeFileId } = this.props;\r\n    if (this.state.checkedUp) {\r\n      this.setState({\r\n        upperListValue: activeFileId,\r\n      });\r\n      this.props.addFile(activeFileId, 0);\r\n    } else {\r\n      this.setState({\r\n        lowerListValue: activeFileId,\r\n      });\r\n      this.props.addFile(activeFileId, 1);\r\n    }\r\n  };\r\n\r\n  fileCheck = (fileId, callback) => {\r\n    if (\r\n      fileId === this.state.lowerListValue ||\r\n      fileId === this.state.upperListValue\r\n    ) {\r\n      this.setState({\r\n        checkedUp: !this.state.checkedUp,\r\n        checkedLow: !this.state.checkedLow,\r\n      });\r\n      this.state.checkedLow\r\n        ? this.handleUpVisChange()\r\n        : this.handleLowVisChange();\r\n    }\r\n    callback();\r\n  };\r\n\r\n  handleChange = (event, value) => {\r\n    this.setState({ value });\r\n    this.props.setOpacity(0, value);\r\n    this.props.setOpacity(1, 100 - value);\r\n  };\r\n\r\n  handleUpMenuChange = (event) => {\r\n    this.setState({ upperListValue: event.target.value });\r\n    this.props.addFile(event.target.value, 0);\r\n    if (this.state.checkedUp) this.props.setActive(event.target.value);\r\n    this.setState({ init: false });\r\n  };\r\n\r\n  handleLowMenuChange = (event) => {\r\n    this.setState({ lowerListValue: event.target.value });\r\n    this.props.addFile(event.target.value, 1);\r\n    if (this.state.checkedLow) this.props.setActive(event.target.value);\r\n    this.setState({ init: false });\r\n  };\r\n\r\n  handleCheck = () => {\r\n    !this.state.checkedUp\r\n      ? this.props.setActive(this.state.upperListValue)\r\n      : this.props.setActive(this.state.lowerListValue);\r\n\r\n    this.setState({\r\n      checkedUp: !this.state.checkedUp,\r\n      checkedLow: !this.state.checkedLow,\r\n    });\r\n  };\r\n\r\n  handleUpVisChange = () => {\r\n    if (this.state.value !== 100) {\r\n      this.setState({ value: 100 });\r\n      this.props.setOpacity(0, 100);\r\n      this.props.setOpacity(1, 0);\r\n    } else {\r\n      this.handleLowVisChange();\r\n    }\r\n  };\r\n\r\n  handleLowVisChange = () => {\r\n    if (this.state.value !== 0) {\r\n      this.setState({ value: 0 });\r\n      this.props.setOpacity(0, 0);\r\n      this.props.setOpacity(1, 100);\r\n    } else {\r\n      this.handleUpVisChange();\r\n    }\r\n  };\r\n\r\n  render() {\r\n    const { classes, omeDict, fsChain, splitscreenFileIds } = this.props;\r\n    const { upperListValue, lowerListValue, value, checkedUp, checkedLow } =\r\n      this.state;\r\n\r\n    return (\r\n      <React.Fragment>\r\n        <div className={classes.root}>\r\n          <div className={classes.upperArea}>\r\n            <div className={classes.upperList}>\r\n              <FormControl className={classes.formControl}>\r\n                <Select\r\n                  name=\"SelectUppderListValue\"\r\n                  variant=\"standard\"\r\n                  value={upperListValue}\r\n                  onChange={this.handleUpMenuChange}\r\n                >\r\n                  {splitscreenFileIds.map(\r\n                    (id, index) =>\r\n                      id !== lowerListValue &&\r\n                      omeDict[id] && (\r\n                        <MenuItem key={\"u\" + index} value={id}>\r\n                          {omeDict[id].fileName} {omeDict[id].scene + 1}\r\n                        </MenuItem>\r\n                      )\r\n                  )}\r\n                </Select>\r\n              </FormControl>\r\n            </div>\r\n          </div>\r\n          <div className={classes.lowerArea}>\r\n            <div className={classes.lowerList}>\r\n              <FormControl className={classes.formControl}>\r\n                <Select\r\n                  name=\"SelectLowerListValue\"\r\n                  variant=\"standard\"\r\n                  value={lowerListValue}\r\n                  onChange={this.handleLowMenuChange}\r\n                >\r\n                  {splitscreenFileIds.map(\r\n                    (id, index) =>\r\n                      id !== upperListValue &&\r\n                      omeDict[id] && (\r\n                        <MenuItem key={\"l\" + index} value={id}>\r\n                          {omeDict[id].fileName} {omeDict[id].scene + 1}\r\n                        </MenuItem>\r\n                      )\r\n                  )}\r\n                </Select>\r\n              </FormControl>\r\n            </div>\r\n          </div>\r\n          <div className={classes.sliderDiv}>\r\n            <FormControl component=\"fieldset\">\r\n              <RadioGroup value={true} onChange={this.handleCheck}>\r\n                <FormControlLabel\r\n                  className={classes.upFormcontrol}\r\n                  value={checkedUp}\r\n                  label=\"\"\r\n                  control={\r\n                    <Radio\r\n                      style={{\r\n                        color: checkedUp ? \"#0673C1\" : \"#666\",\r\n                      }}\r\n                    />\r\n                  }\r\n                />\r\n                <FormControlLabel\r\n                  className={classes.lowFormcontrol}\r\n                  value={checkedLow}\r\n                  label=\"\"\r\n                  control={\r\n                    <Radio\r\n                      style={{\r\n                        color: checkedLow ? \"#0673C1\" : \"#666\",\r\n                      }}\r\n                    />\r\n                  }\r\n                />\r\n              </RadioGroup>\r\n            </FormControl>\r\n            <IconButton\r\n              className={classes.upButton}\r\n              onClick={this.handleUpVisChange}\r\n              size=\"small\"\r\n            >\r\n              <VisibilityIcon\r\n                style={{ color: value === 100 ? \"#0673C1\" : \"#666\" }}\r\n              />\r\n            </IconButton>\r\n            <IconButton\r\n              className={classes.lowButton}\r\n              onClick={this.handleLowVisChange}\r\n              size=\"small\"\r\n            >\r\n              <VisibilityIcon\r\n                style={{ color: value === 0 ? \"#0673C1\" : \"#666\" }}\r\n              />\r\n            </IconButton>\r\n            <IconButton\r\n              className={classes.chainButton}\r\n              onClick={fsChain}\r\n              size=\"small\"\r\n            >\r\n              {this.props.isChained ? (\r\n                <LinkIcon style={{ color: \"#0673C1\" }} />\r\n              ) : (\r\n                <LinkOffIcon />\r\n              )}\r\n            </IconButton>\r\n            <Slider\r\n              className={classes.slider}\r\n              getAriaValueText={() => value}\r\n              aria-labelledby=\"discrete-slider-custom\"\r\n              valueLabelDisplay=\"auto\"\r\n              orientation=\"vertical\"\r\n              value={value}\r\n              onChange={this.handleChange}\r\n            ></Slider>\r\n          </div>\r\n        </div>\r\n      </React.Fragment>\r\n    );\r\n  }\r\n}\r\n\r\nOverlaySlider.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  componentRef: PropTypes.func,\r\n  setOpacity: PropTypes.func,\r\n  activeFileId: PropTypes.string,\r\n  splitscreenFileIds: PropTypes.array,\r\n  omeDict: PropTypes.object,\r\n  addFile: PropTypes.func,\r\n  setActive: PropTypes.func,\r\n  fullscreenFileIds: PropTypes.array,\r\n  fsChain: PropTypes.func,\r\n  isChained: PropTypes.bool,\r\n  rendererdict: PropTypes.object,\r\n};\r\n\r\nexport default withStyles(styles)(OverlaySlider);\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n// define the component's styling\r\nconst styles = () => ({\r\n  resizesBorder: {\r\n    position: \"absolute\",\r\n    zIndex: 9999999,\r\n    height: \"100%\",\r\n    right: -8,\r\n    width: 12,\r\n    top: 0,\r\n    cursor: \"col-resize\",\r\n  },\r\n  overlayBorder: {\r\n    position: \"fixed\",\r\n    top: 0,\r\n    left: 0,\r\n    width: \"100%\",\r\n    height: \"100%\",\r\n    zIndex: 9999999,\r\n    cursor: \"col-resize\",\r\n  },\r\n});\r\n\r\nclass VerticalResizeBorder extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n    this.state = {\r\n      resizeMode: false,\r\n      borderWidth: 8,\r\n    };\r\n  }\r\n\r\n  handleMouseDown = (e) => {\r\n    this.setState({ resizeMode: true, lastPageX: e.pageX });\r\n  };\r\n  handleMouseMove = (e) => {\r\n    e.preventDefault();\r\n    if (this.state.resizeMode) {\r\n      let deltaX = this.state.lastPageX - e.pageX;\r\n      this.props.resizeSideBar(deltaX, false);\r\n      this.setState({ lastPageX: e.pageX });\r\n    }\r\n  };\r\n  handleMouseEnd = () => {\r\n    if (this.state.resizeMode) {\r\n      this.setState({ resizeMode: false });\r\n      this.props.resizeSideBar(0, true);\r\n    }\r\n  };\r\n\r\n  render() {\r\n    const { classes } = this.props;\r\n    //const { borderWidth } = this.state;\r\n    return (\r\n      <div\r\n        className={\r\n          this.state.resizeMode ? classes.overlayBorder : classes.resizesBorder\r\n        }\r\n        onMouseDown={(e) => this.handleMouseDown(e)}\r\n        onMouseMove={(e) => this.handleMouseMove(e)}\r\n        onMouseLeave={(e) => this.handleMouseEnd(e)}\r\n        onMouseUp={(e) => this.handleMouseEnd(e)}\r\n      ></div>\r\n    );\r\n  }\r\n}\r\n\r\n// define the component's interface\r\nVerticalResizeBorder.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  resizeSideBar: PropTypes.func,\r\n};\r\n\r\nexport default withStyles(styles)(VerticalResizeBorder);\r\n","import React, { Component } from \"react\";\r\n\r\nimport PropTypes from \"prop-types\";\r\nimport classNames from \"classnames\";\r\n\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n\r\nimport {\r\n  IconButton,\r\n  Tooltip,\r\n  Divider,\r\n  Fade,\r\n  Popper,\r\n  Paper,\r\n} from \"@mui/material\";\r\n\r\nimport {\r\n  faImages,\r\n  faCube,\r\n  faFillDrip,\r\n  faPlus,\r\n  faPen,\r\n  faDrawPolygon,\r\n  faClone,\r\n  faMousePointer,\r\n  faCamera,\r\n  faDownload,\r\n  faPlayCircle,\r\n  faExchangeAlt,\r\n  faSquareFull,\r\n  faThLarge,\r\n  faTh,\r\n  faBrain,\r\n  faChartBar,\r\n  faTable,\r\n  faMagic,\r\n  faBraille,\r\n  faFileDownload,\r\n} from \"@fortawesome/free-solid-svg-icons\";\r\nimport CastIcon from \"@mui/icons-material/Cast\";\r\nimport AllOutIcon from \"@mui/icons-material/AllOut\";\r\nimport RadioButtonCheckedIcon from \"@mui/icons-material/RadioButtonChecked\";\r\nimport { faCircle } from \"@fortawesome/free-regular-svg-icons\";\r\nimport UndoIcon from \"@mui/icons-material/Undo\";\r\nimport RedoIcon from \"@mui/icons-material/Redo\";\r\nimport RateReviewIcon from \"@mui/icons-material/RateReview\";\r\n//import IsoIcon from \"@mui/icons-material/Iso\";\r\nimport PinDropIcon from \"@mui/icons-material/PinDrop\";\r\nimport { FontAwesomeIcon } from \"@fortawesome/react-fontawesome\";\r\nimport {\r\n  Save,\r\n  ZoomOutMap,\r\n  CheckBoxOutlineBlank,\r\n  ZoomIn,\r\n  ZoomOut,\r\n  ViewQuilt,\r\n  FilterAlt,\r\n} from \"@mui/icons-material\";\r\nimport SelectAllIcon from \"@mui/icons-material/SelectAll\";\r\nimport FullscreenIcon from \"@mui/icons-material/Fullscreen\";\r\nimport FullscreenExitIcon from \"@mui/icons-material/FullscreenExit\";\r\nimport FlipIcon from \"@mui/icons-material/Flip\";\r\nimport ScatterPlotIcon from \"@mui/icons-material/ScatterPlot\";\r\nimport InlineSVG from \"svg-inline-react\";\r\nimport ToggleButton from \"./ToggleButton\";\r\nimport CustomSvgIcon from \"../../globalComponents/CustomSvgIcon.jsx\";\r\n\r\nimport { withTiles } from \"../contexts/TilesContext\";\r\nimport Backend from \"../../common/utils/Backend\";\r\nimport VerticalResizeBorder from \"./VerticalResizeBorder\";\r\nimport { withAllViewerContexts } from \"../contexts/AllViewerContexts\";\r\nimport { withResultTab } from \"../contexts/ResultTabContext\";\r\n\r\n// enum containing all available tools\r\nexport const Tools = {\r\n  NONE: \"none\",\r\n  // shape anotation tools\r\n  RECT_ROI: \"rect\",\r\n  // pixel anotation tools\r\n  PEN_ROI: \"pen\",\r\n  MAGICWAND_ROI: \"magic wand\",\r\n  REGIONGROWING_ROI: \"region growing\",\r\n  REGIONGRABCUT_ROI: \"region grabcut\",\r\n  REGION_ROI: \"region\",\r\n  RECTANGLE_ROI: \"rectangle\",\r\n  COMMENT_ROI: \"comment\",\r\n  ELLIPSE_ROI: \"ellipse\",\r\n  COPY_ROI: \"copy\",\r\n  SELECTION_ROI: \"selection\",\r\n  FILTERANNOTATIONS_ROI: \"smallestroi\",\r\n  PLOTNEAREST_ROI: \"nearestroi\",\r\n  FILL: \"fill\",\r\n  IAM: \"iam\",\r\n  // active learning\r\n  AL: \"activeLearning\",\r\n  AITRAINING: \"aiTraining\",\r\n  GRIDTOOL: \"gridtool\",\r\n  GRIDANNOTATIONTOOL: \"gridannotationtool\",\r\n  SELECTION_Tile: \"selectiontile\",\r\n  POINTCOUNTING_Tile: \"pointcountingtile\",\r\n  // tileRegistration\r\n  LANDMARK: \"landmark\",\r\n  STREAMVIEW: \"stream view\",\r\n  HEATMAP: \"heatmap\",\r\n  ROIRESIZE: \"roiresize\",\r\n};\r\n\r\n// define the component's styling\r\nconst styles = (theme) => ({\r\n  toolBar: {\r\n    position: \"relative\",\r\n    margin: 0,\r\n    padding: 0,\r\n    marginRight: 5,\r\n    background: \"#fff\",\r\n    height: \"100%\",\r\n    display: \"grid\",\r\n    gridTemplateRows: \"1fr auto\",\r\n    overflowX: \"hidden\",\r\n    overflowY: \"auto\",\r\n  },\r\n  toolbarButton: {\r\n    display: \"inline-block\",\r\n    width: 40,\r\n    height: 40,\r\n    padding: 0,\r\n    margin: 0,\r\n    fontSize: 22,\r\n  },\r\n  toolbarButtonIcon: {\r\n    verticalAlign: \"-4px\",\r\n  },\r\n  textIcon: {\r\n    fontSize: 18,\r\n    fontWeight: \"bold\",\r\n  },\r\n  toolbarButtonChecked: {\r\n    width: 40,\r\n    color: theme.palette.primary.main,\r\n  },\r\n  divider: {\r\n    marginLeft: 5,\r\n    marginRight: 5,\r\n  },\r\n});\r\n\r\nclass VerticalToolBar extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n    this.state = {\r\n      open: false,\r\n      anchorEl: null,\r\n    };\r\n  }\r\n\r\n  componentDidMount = () => {\r\n    this.setToolBarWidth(false);\r\n    document.addEventListener(\"keydown\", this.handleEscKey);\r\n  };\r\n\r\n  componentWillUnmount() {\r\n    document.removeEventListener(\"keydown\", this.handleEscKey);\r\n  }\r\n\r\n  // trigger on window resize: set toolbarwidth to 1 col, 2 col or 2 cols with scrollbar\r\n  setToolBarWidth = (viewerToGallery) => {\r\n    if (this.containerElement && this.topElement && this.bottomElement) {\r\n      const { verticalToolBarWidth } = this.props;\r\n      let containerHeight = this.containerElement.clientHeight;\r\n      let topHeight = this.topElement.clientHeight;\r\n      let bottomHeight = this.bottomElement.clientHeight;\r\n      let resultWidth = verticalToolBarWidth;\r\n      if (verticalToolBarWidth > 45) {\r\n        if ((topHeight + bottomHeight) * 2 < containerHeight) {\r\n          resultWidth = 45;\r\n        } else if (containerHeight < topHeight + bottomHeight) {\r\n          resultWidth = 101;\r\n        } else {\r\n          resultWidth = 90;\r\n        }\r\n      } else if (topHeight + bottomHeight > containerHeight) {\r\n        resultWidth = 90;\r\n      }\r\n      if (verticalToolBarWidth !== resultWidth - 5) {\r\n        this.props.updateToolBarWidth(resultWidth, viewerToGallery);\r\n      }\r\n    }\r\n  };\r\n\r\n  handleEscKey = (event) => {\r\n    if (event.key === \"Escape\" || event.keyCode === 27) {\r\n      const { onChangeTool } = this.props;\r\n      onChangeTool(Tools.NONE);\r\n    }\r\n  };\r\n\r\n  checkToolInConfig(toolName) {\r\n    if (this.props.viewerConfig) {\r\n      if (this.props.viewerConfig.project.toolsInProject[toolName]) {\r\n        return true;\r\n      } else {\r\n        return false;\r\n      }\r\n    }\r\n  }\r\n\r\n  exportAllFiles = (idx, projectId) => {\r\n    // export images of structure to folder in png format\r\n    let fileIDs = this.props.project.files;\r\n    this.props.spinloader.show();\r\n    Backend.exportGallery(projectId, fileIDs[idx].id, (e) => {\r\n      let str_1 = \"Export File \" + fileIDs[idx].id;\r\n      let str_2 = \"Gallery exported to: \" + e.path;\r\n      if (idx + 1 < this.props.project.files.length) {\r\n        this.showMessage(str_1);\r\n        this.exportAllFiles(idx + 1, projectId, fileIDs[idx + 1].id);\r\n      } else {\r\n        this.showMessage(str_1);\r\n        this.showMessage(str_2);\r\n        this.props.setAlruns(false);\r\n        this.props.spinloader.hide();\r\n      }\r\n    });\r\n  };\r\n\r\n  exportCurrentFile = (idx, projectId, fileId) => {\r\n    // export images of structure to folder in png format\r\n    this.props.spinloader.show();\r\n    Backend.exportGallery(projectId, fileId, (e) => {\r\n      let str_1 = \"Export File \" + fileId;\r\n      let str_2 = \"Gallery exported to: \" + e.path;\r\n      this.showMessage(str_1);\r\n      this.showMessage(str_2);\r\n      this.props.setAlruns(false);\r\n      this.props.spinloader.hide();\r\n    });\r\n  };\r\n\r\n  showMessage = (x) => {\r\n    window.showSuccessSnackbar(x);\r\n  };\r\n\r\n  setStructureIds = () => {\r\n    const { structures, roiLayers } = this.props;\r\n    // make sure thath all rois have structureIds --> somtimes have no ids after run iams\r\n    for (let i = 0; i < structures.length; i++) {\r\n      // if parent structure set structureIds because parent rois do not have ids after iam / job\r\n      roiLayers[i].layer.regionRois.forEach((roi) => {\r\n        // if roi is no subtype an has no structureId yet\r\n        if (roi.structureId === 0 && !roi.isSubtype) {\r\n          roi.structureId = structures[i].id;\r\n          roi.color = structures[i].color;\r\n        }\r\n      });\r\n    }\r\n  };\r\n\r\n  onSaveImages(allScenes) {\r\n    // make sure that all rois have a structure id (if only run job parents do not have structureId)\r\n    this.setStructureIds();\r\n    // save and export images\r\n    this.props.saveChangesGallery(true);\r\n    this.props.setAlruns(true);\r\n\r\n    if (allScenes) {\r\n      // wait until saving is finished (project json) --> then start export\r\n      setTimeout(() => {\r\n        this.exportAllFiles(0, this.props.projectId, this.props.fileId);\r\n      }, 2000);\r\n    } else {\r\n      // wait until saving is finished (project json) --> then start export\r\n      setTimeout(() => {\r\n        this.exportCurrentFile(0, this.props.projectId, this.props.fileId);\r\n      }, 2000);\r\n    }\r\n  }\r\n\r\n  setZLevelforRois = () => {\r\n    const { roiLayers, selectedLayer } = this.props;\r\n    // set z level of rois to selected z level in viewer\r\n    let zLevelClassification = this.props.tiles.getZLevel();\r\n    roiLayers[selectedLayer].layer.regionRois.forEach((roi) => {\r\n      roi.z = zLevelClassification;\r\n    });\r\n  };\r\n\r\n  ApplyModel = () => {\r\n    const { structures, selectedLayer } = this.props;\r\n    // apply trained dl model to selected structure\r\n\r\n    // check if selectedLayer is parent\r\n    if (structures[selectedLayer].classificationSubtype) {\r\n      this.props.trainingWarning(\"subtype\");\r\n      return;\r\n    }\r\n\r\n    // check if structure has childs\r\n    // check if selectedLayer is parent\r\n    if (!structures[selectedLayer].hasChild) {\r\n      this.props.trainingWarning(\"hasNoChilds\");\r\n      return;\r\n    }\r\n\r\n    // make warning that not changing layer while applying model\r\n    window.showWarningSnackbar(\r\n      \"Please do not change structure while applying the model.\"\r\n    );\r\n\r\n    // set z-Index of rois to selected z-Level\r\n    this.setZLevelforRois();\r\n    this.props.saveChangesGallery();\r\n    this.props.setAlruns(true);\r\n    let passiveLearning = true;\r\n    let applyModel = true;\r\n    this.props.applyDL(\r\n      this.props.tools[\"alm_gallery_tool\"],\r\n      this.props.projectId,\r\n      this.props.fileId,\r\n      passiveLearning,\r\n      applyModel\r\n    );\r\n  };\r\n\r\n  findClassificationChilds = () => {\r\n    const { structures, selectedLayer } = this.props;\r\n    // return direct classification subtypes\r\n    return structures.filter(\r\n      (element) =>\r\n        element.parentId === structures[selectedLayer].id &&\r\n        element.classificationSubtype\r\n    );\r\n  };\r\n\r\n  enoughAnnotations = (childs) => {\r\n    const { roiLayers, selectedLayer } = this.props;\r\n    // check if enough annotations for training of dl model (at least one class with 5 annotations and one other class with 1 annotation)\r\n    let minFive = false;\r\n    let twoAnnotated = 0;\r\n    childs.forEach((element) => {\r\n      // get number of elements for child\r\n      let numberElements = roiLayers[selectedLayer].layer.regionRois.filter(\r\n        (roi) => roi.structureId === element.id\r\n      ).length;\r\n\r\n      // check if minimum of five in one class\r\n      if (numberElements >= 5) {\r\n        minFive = true;\r\n      }\r\n      // check if two classes with at least one element\r\n      if (numberElements >= 1) {\r\n        twoAnnotated = twoAnnotated + 1;\r\n      }\r\n    });\r\n\r\n    // if one class with at least five and one other class with at least one annotation --> enough annotations for training\r\n    let enough = false;\r\n    if (minFive && twoAnnotated >= 2) {\r\n      enough = true;\r\n    }\r\n    return enough;\r\n  };\r\n\r\n  onStartTraining = () => {\r\n    const { structures, selectedLayer } = this.props;\r\n    // start training for dl model\r\n\r\n    // check if selectedLayer is parent\r\n    if (structures[selectedLayer].classificationSubtype) {\r\n      this.props.trainingWarning(\"subtype\");\r\n      return;\r\n    }\r\n\r\n    // check if structure has childs\r\n    // check if selectedLayer is parent\r\n    if (!structures[selectedLayer].hasChild) {\r\n      this.props.trainingWarning(\"hasNoChilds\");\r\n      return;\r\n    }\r\n\r\n    // check if enough objects per class\r\n    let childs = this.findClassificationChilds();\r\n    let enoughAnnos = this.enoughAnnotations(childs);\r\n    if (!enoughAnnos) {\r\n      this.props.trainingWarning(\"tooFewAnnotations\");\r\n      return;\r\n    }\r\n\r\n    this.props.saveChangesGallery();\r\n    this.props.setAlruns(true);\r\n    let passiveLearning = true;\r\n    this.props.applyDL(\r\n      this.props.tools[\"alm_gallery_tool\"],\r\n      this.props.projectId,\r\n      this.props.fileId,\r\n      passiveLearning\r\n    );\r\n  };\r\n\r\n  saveProject = () => {\r\n    // save contextObject in local storage\r\n    this.props.persistentStorage.save(\r\n      \"contextObject\",\r\n      this.props.tiles.getStrAnnoCount()\r\n    );\r\n\r\n    // save SubtypesPagesObject in local storage\r\n    this.props.persistentStorage.save(\r\n      \"subtypesPagesObject\",\r\n      this.props.tiles.getSubtypesPages()\r\n    );\r\n\r\n    // save project\r\n    this.props.onSave();\r\n  };\r\n\r\n  showSubtypes = (str) => {\r\n    const { structures } = this.props;\r\n    // unfold subtypes when using specific tool (so suptypes are displayed in subtype color not parent color)\r\n    structures.forEach(function (element) {\r\n      if (element.parentId === str.id) {\r\n        element.isUnfolded = true;\r\n      }\r\n    });\r\n\r\n    this.props.projectContext.setState({ structures });\r\n  };\r\n\r\n  openAITrainingPopUp = () => {\r\n    const { projectContext } = this.props;\r\n    projectContext.aiStateObject.open = true;\r\n    this.forceUpdate();\r\n  };\r\n\r\n  onToggleLayoutItem = (e) => {\r\n    const { rendererRef } = this.props;\r\n    rendererRef.onToggle(e);\r\n    this.forceUpdate();\r\n  };\r\n\r\n  render() {\r\n    const {\r\n      classes,\r\n      viewerConfig,\r\n      structures,\r\n      tools,\r\n      onChangeTool,\r\n      activeTool,\r\n      displayTimeBar,\r\n      onToggleTimeBar,\r\n      displayZStackBar,\r\n      showGallery,\r\n      galleryType,\r\n      show3DViewer,\r\n      onToggle3DViewer,\r\n      showPointCloud,\r\n      onToggleMeshView,\r\n      showTilesGallery,\r\n      selectedLayer,\r\n      onSaveScreenshot,\r\n      onZoomDelta,\r\n      onZoomFit,\r\n      onZoomOriginal,\r\n      onToggleSideBar,\r\n      onSave,\r\n      projectHistory,\r\n      verticalToolBarWidth,\r\n      ome,\r\n      activeTab,\r\n      rendererRef,\r\n      annotationsAreReduced,\r\n    } = this.props;\r\n\r\n    const { groupPermissions } = this.props.projectContext;\r\n\r\n    const { anchorEl, open } = this.state;\r\n\r\n    // check which elements should be displayed in specific modules\r\n    let showZoomLevels = true;\r\n    let showUndoRedo = true;\r\n    let showSaveTool = true;\r\n    let showToggleSideBar = true;\r\n    if (\r\n      this.props.project &&\r\n      (this.props.project.type.includes(\"HistoPointCounting\") ||\r\n        this.props.project.type.includes(\"HistoClassification\"))\r\n    ) {\r\n      showZoomLevels = activeTab !== 1;\r\n      showUndoRedo = activeTab !== 1;\r\n      showSaveTool = activeTab !== 1;\r\n      showToggleSideBar = activeTab !== 1;\r\n      if (showGallery) {\r\n        showToggleSideBar = false;\r\n      }\r\n      if (show3DViewer) {\r\n        showToggleSideBar = false;\r\n        showUndoRedo = false;\r\n        showSaveTool = false;\r\n        showZoomLevels = false;\r\n      }\r\n    }\r\n    return (\r\n      <div\r\n        ref={(containerElement) => {\r\n          this.containerElement = containerElement;\r\n        }}\r\n        className={classes.toolBar}\r\n        style={{\r\n          width: verticalToolBarWidth - 5,\r\n        }}\r\n      >\r\n        <div>\r\n          {!(\r\n            this.props.projectContext.activeTab > 0 &&\r\n            this.props.project &&\r\n            (this.props.project.type.includes(\"HistoPointCounting\") ||\r\n              this.props.project.type.includes(\"HistoClassification\"))\r\n          ) && (\r\n            <VerticalResizeBorder resizeSideBar={this.props.resizeSideBar} />\r\n          )}\r\n          <Popper open={open} anchorEl={anchorEl} placement=\"left\" transition>\r\n            {({ TransitionProps }) => (\r\n              <Fade {...TransitionProps} timeout={350}>\r\n                <Paper\r\n                  style={{\r\n                    height: 40,\r\n                  }}\r\n                >\r\n                  <ToggleButton\r\n                    classes={classes}\r\n                    title={\"Toggle time bar\"}\r\n                    name={\"showTimeBar\"}\r\n                    value={rendererRef.getLayoutElement(\"showTimeBar\")}\r\n                    icon={\"faStopwatch\"}\r\n                    onToggle={onToggleTimeBar}\r\n                    disabled={Boolean(!displayTimeBar)}\r\n                  />\r\n\r\n                  <ToggleButton\r\n                    classes={classes}\r\n                    title={\"Toggle Z-stack\"}\r\n                    name={\"showZStackBar\"}\r\n                    value={rendererRef.getLayoutElement(\"showZStackBar\")}\r\n                    icon={\"faLayerGroup\"}\r\n                    onToggle={this.onToggleLayoutItem}\r\n                    disabled={Boolean(!displayZStackBar)}\r\n                  />\r\n\r\n                  <ToggleButton\r\n                    classes={classes}\r\n                    title={\"Toggle scalebar\"}\r\n                    name={\"showScaleBar\"}\r\n                    value={rendererRef.getLayoutElement(\"showScaleBar\")}\r\n                    icon={\"faRuler\"}\r\n                    onToggle={this.onToggleLayoutItem}\r\n                    disabled={!(ome && ome.physicalSizeX)}\r\n                  />\r\n\r\n                  <ToggleButton\r\n                    classes={classes}\r\n                    title={\"Toggle Object Index\"}\r\n                    name={\"showObjectIdx\"}\r\n                    value={rendererRef.getLayoutElement(\"showObjectIdx\")}\r\n                    icon={\"faInfoCircle\"}\r\n                    onToggle={this.onToggleLayoutItem}\r\n                  />\r\n\r\n                  <ToggleButton\r\n                    classes={classes}\r\n                    title={\"Toggle Navigator\"}\r\n                    name={\"showMiniMap\"}\r\n                    value={rendererRef.getLayoutElement(\"showMiniMap\")}\r\n                    icon={\"MapIcon\"}\r\n                    onToggle={this.onToggleLayoutItem}\r\n                  />\r\n\r\n                  <ToggleButton\r\n                    classes={classes}\r\n                    title={\"Toggle image info\"}\r\n                    name={\"showImageInfo\"}\r\n                    value={rendererRef.getLayoutElement(\"showImageInfo\")}\r\n                    icon={\"faInfo\"}\r\n                    onToggle={this.onToggleLayoutItem}\r\n                  />\r\n\r\n                  <ToggleButton\r\n                    classes={classes}\r\n                    title={\"Toggle zoom info bar\"}\r\n                    name={\"showZoomBar\"}\r\n                    value={rendererRef.getLayoutElement(\"showZoomBar\")}\r\n                    icon={\"LinearScaleIcon\"}\r\n                    onToggle={this.onToggleLayoutItem}\r\n                  />\r\n\r\n                  <ToggleButton\r\n                    classes={classes}\r\n                    title={\"Toggle result table\"}\r\n                    name={\"showResultTable\"}\r\n                    value={rendererRef.getLayoutElement(\"showResultTable\")}\r\n                    icon={\"faTable\"}\r\n                    onToggle={this.onToggleLayoutItem}\r\n                  />\r\n\r\n                  <ToggleButton\r\n                    classes={classes}\r\n                    title={\"Toggle File navigation buttons\"}\r\n                    name={\"showFileNavButtons\"}\r\n                    value={rendererRef.getLayoutElement(\"showFileNavButtons\")}\r\n                    icon={\"UnfoldMore\"}\r\n                    onToggle={this.onToggleLayoutItem}\r\n                  />\r\n                </Paper>\r\n              </Fade>\r\n            )}\r\n          </Popper>\r\n          <div\r\n            ref={(topElement) => {\r\n              this.topElement = topElement;\r\n            }}\r\n          >\r\n            {this.checkToolInConfig(\"GalleryTool\") && !show3DViewer && (\r\n              <Tooltip\r\n                disableInteractive\r\n                placement=\"left\"\r\n                title=\"Toggle gallery\"\r\n              >\r\n                <IconButton\r\n                  className={classNames(\r\n                    classes.toolbarButton,\r\n                    showGallery && classes.toolbarButtonChecked\r\n                  )}\r\n                  onClick={() => {\r\n                    if (this.props.isImporting) {\r\n                      window.showWarningSnackbar(\r\n                        \"File import is running, please be patient!\"\r\n                      );\r\n                      return;\r\n                    }\r\n                    this.props.onToggleGallery(!showGallery);\r\n                    if (showGallery === true) {\r\n                      this.props.tiles.setGalleryVisible(false);\r\n                      this.props.setGalleryTool();\r\n                      this.props.changeToSelectedFile(); // if files gallery is active change to selected file\r\n                    } else {\r\n                      this.setToolBarWidth(true);\r\n                      this.props.tiles.setGalleryVisible(true);\r\n                      this.props.setGalleryTool();\r\n                    }\r\n                  }}\r\n                  size=\"large\"\r\n                >\r\n                  <FontAwesomeIcon icon={faImages} />\r\n                </IconButton>\r\n              </Tooltip>\r\n            )}\r\n            {/* ADD 3D-Converting Tool -> start converting with apply */}\r\n            {this.checkToolInConfig(\"3DViewer\") && (\r\n              <Tooltip\r\n                disableInteractive\r\n                placement=\"left\"\r\n                title=\"Show 3D visualisation\"\r\n              >\r\n                <IconButton\r\n                  className={classNames(\r\n                    classes.toolbarButton,\r\n                    show3DViewer && classes.toolbarButtonChecked\r\n                  )}\r\n                  onClick={() => {\r\n                    onToggle3DViewer(!show3DViewer);\r\n                  }}\r\n                  size=\"large\"\r\n                >\r\n                  <FontAwesomeIcon icon={faCube} />\r\n                </IconButton>\r\n              </Tooltip>\r\n            )}\r\n            {this.checkToolInConfig(\"3DPointCloudView\") && show3DViewer && (\r\n              <Tooltip\r\n                disableInteractive\r\n                placement=\"left\"\r\n                title=\"Toggle between Point-Cloud and Mesh-View\"\r\n              >\r\n                <IconButton\r\n                  className={classNames(\r\n                    classes.toolbarButton,\r\n                    showPointCloud && classes.toolbarButtonChecked\r\n                  )}\r\n                  onClick={() => {\r\n                    onToggleMeshView(!showPointCloud);\r\n                  }}\r\n                  size=\"large\"\r\n                >\r\n                  <FontAwesomeIcon icon={faBraille} />\r\n                </IconButton>\r\n              </Tooltip>\r\n            )}\r\n\r\n            {this.checkToolInConfig(\"TilesTool\") && (\r\n              <Tooltip\r\n                disableInteractive\r\n                placement=\"left\"\r\n                title=\"Toggle tiles [CTRL + G]\"\r\n              >\r\n                <IconButton\r\n                  className={classNames(\r\n                    classes.toolbarButton,\r\n                    showTilesGallery && classes.toolbarButtonChecked\r\n                  )}\r\n                  onClick={() => {\r\n                    this.props.onToggleTilesGallery(!showTilesGallery);\r\n                    this.props.setGalleryTool();\r\n                  }}\r\n                  size=\"large\"\r\n                >\r\n                  <FontAwesomeIcon icon={faSquareFull} />\r\n                </IconButton>\r\n              </Tooltip>\r\n            )}\r\n\r\n            {this.checkToolInConfig(\"FilterAnnotationsTool\") &&\r\n              !show3DViewer &&\r\n              !showGallery &&\r\n              !showTilesGallery && (\r\n                <Tooltip\r\n                  disableInteractive\r\n                  placement=\"left\"\r\n                  title=\"Filter Annotations\"\r\n                >\r\n                  <IconButton\r\n                    className={classNames(\r\n                      classes.toolbarButton,\r\n                      activeTool === Tools.FILTERANNOTATIONS_ROI &&\r\n                        classes.toolbarButtonChecked\r\n                    )}\r\n                    onClick={() =>\r\n                      onChangeTool(\r\n                        activeTool === Tools.FILTERANNOTATIONS_ROI\r\n                          ? Tools.NONE\r\n                          : Tools.FILTERANNOTATIONS_ROI\r\n                      )\r\n                    }\r\n                    size=\"large\"\r\n                  >\r\n                    <FilterAlt className={classes.toolbarButtonIcon} />\r\n                  </IconButton>\r\n                </Tooltip>\r\n              )}\r\n\r\n            {this.checkToolInConfig(\"PlotNearestTool\") &&\r\n              !show3DViewer &&\r\n              !showGallery &&\r\n              !showTilesGallery && (\r\n                <Tooltip\r\n                  disableInteractive\r\n                  placement=\"left\"\r\n                  title=\"Show nearest objects\"\r\n                >\r\n                  <IconButton\r\n                    className={classNames(\r\n                      classes.toolbarButton,\r\n                      activeTool === Tools.PLOTNEAREST_ROI &&\r\n                        classes.toolbarButtonChecked\r\n                    )}\r\n                    onClick={() =>\r\n                      onChangeTool(\r\n                        activeTool === Tools.PLOTNEAREST_ROI\r\n                          ? Tools.NONE\r\n                          : Tools.PLOTNEAREST_ROI\r\n                      )\r\n                    }\r\n                    size=\"large\"\r\n                  >\r\n                    <ScatterPlotIcon className={classes.toolbarButtonIcon} />\r\n                  </IconButton>\r\n                </Tooltip>\r\n              )}\r\n            {this.props.splitscreenCount > 1 && (\r\n              <Tooltip\r\n                disableInteractive\r\n                placement=\"left\"\r\n                title=\"Toggle fullscreen\"\r\n              >\r\n                <IconButton\r\n                  className={classes.toolbarButton}\r\n                  size=\"small\"\r\n                  onClick={() => this.props.onToggleFullscreen()}\r\n                >\r\n                  {this.props.showFullscreen ? (\r\n                    <FullscreenExitIcon className={classes.toolbarButtonIcon} />\r\n                  ) : (\r\n                    <FullscreenIcon className={classes.toolbarButtonIcon} />\r\n                  )}\r\n                </IconButton>\r\n              </Tooltip>\r\n            )}\r\n            {(this.props.showFullscreen || this.props.splitscreenCount === 1) &&\r\n              this.checkToolInConfig(\"AdjustLayoutTool\") &&\r\n              !show3DViewer &&\r\n              !showGallery &&\r\n              !showTilesGallery && (\r\n                <Tooltip\r\n                  disableInteractive\r\n                  placement=\"top\"\r\n                  title=\"Adjust layout\"\r\n                >\r\n                  <IconButton\r\n                    className={classes.toolbarButton}\r\n                    size=\"small\"\r\n                    onClick={(e) =>\r\n                      this.setState({\r\n                        open: !this.state.open,\r\n                        anchorEl: e.target,\r\n                      })\r\n                    }\r\n                  >\r\n                    <ViewQuilt className={classes.toolbarButtonIcon} />\r\n                  </IconButton>\r\n                </Tooltip>\r\n              )}\r\n            {viewerConfig && viewerConfig.project.annotations !== \"pixel\" ? (\r\n              <React.Fragment>\r\n                <Divider className={classes.divider} />\r\n                {this.checkToolInConfig(\"DrawRectangleAnnotationTool\") &&\r\n                  !show3DViewer &&\r\n                  !showTilesGallery && (\r\n                    <Tooltip\r\n                      disableInteractive\r\n                      placement=\"left\"\r\n                      title=\"Draw rectangle annotation\"\r\n                    >\r\n                      <span>\r\n                        <IconButton\r\n                          className={classNames(\r\n                            classes.toolbarButton,\r\n                            activeTool === Tools.RECT_ROI &&\r\n                              classes.toolbarButtonChecked\r\n                          )}\r\n                          onClick={() =>\r\n                            onChangeTool(\r\n                              activeTool === Tools.RECT_ROI\r\n                                ? Tools.NONE\r\n                                : Tools.RECT_ROI\r\n                            )\r\n                          }\r\n                          size=\"large\"\r\n                        >\r\n                          <FontAwesomeIcon icon={faPlus} />\r\n                        </IconButton>\r\n                      </span>\r\n                    </Tooltip>\r\n                  )}\r\n              </React.Fragment>\r\n            ) : (\r\n              <React.Fragment>\r\n                <Divider className={classes.divider} />\r\n                {this.checkToolInConfig(\"DrawPixelAnnotationTool\") &&\r\n                  galleryType !== \"FilesGallery\" &&\r\n                  !show3DViewer &&\r\n                  !showTilesGallery && (\r\n                    <Tooltip\r\n                      disableInteractive\r\n                      placement=\"left\"\r\n                      title={\r\n                        groupPermissions.canAnnotate\r\n                          ? annotationsAreReduced\r\n                            ? \"Sample Annotations can not be changed!\"\r\n                            : \"Draw pixel annotation [Ctrl]+[1]\"\r\n                          : \"No Permission\"\r\n                      }\r\n                    >\r\n                      <span>\r\n                        <IconButton\r\n                          id=\"toolPenBtn\"\r\n                          disabled={annotationsAreReduced}\r\n                          className={classNames(\r\n                            classes.toolbarButton,\r\n                            activeTool === Tools.PEN_ROI &&\r\n                              classes.toolbarButtonChecked\r\n                          )}\r\n                          onClick={() =>\r\n                            onChangeTool(\r\n                              activeTool === Tools.PEN_ROI\r\n                                ? Tools.NONE\r\n                                : Tools.PEN_ROI\r\n                            )\r\n                          }\r\n                          size=\"large\"\r\n                        >\r\n                          <FontAwesomeIcon icon={faPen} />\r\n                        </IconButton>\r\n                      </span>\r\n                    </Tooltip>\r\n                  )}\r\n\r\n                {this.checkToolInConfig(\"DrawMagicWandAnnotationTool\") &&\r\n                  !show3DViewer &&\r\n                  !showTilesGallery && (\r\n                    <Tooltip\r\n                      disableInteractive\r\n                      placement=\"left\"\r\n                      title={\r\n                        groupPermissions.canAnnotate\r\n                          ? annotationsAreReduced\r\n                            ? \"Sample Annotations can not be changed!\"\r\n                            : \"Use magic wand\"\r\n                          : \"No Permission\"\r\n                      }\r\n                    >\r\n                      <span>\r\n                        <IconButton\r\n                          className={classNames(\r\n                            classes.toolbarButton,\r\n                            activeTool === Tools.MAGICWAND_ROI &&\r\n                              classes.toolbarButtonChecked\r\n                          )}\r\n                          disabled={\r\n                            !groupPermissions.canAnnotate ||\r\n                            annotationsAreReduced\r\n                          }\r\n                          onClick={() =>\r\n                            onChangeTool(\r\n                              activeTool === Tools.MAGICWAND_ROI\r\n                                ? Tools.NONE\r\n                                : Tools.MAGICWAND_ROI\r\n                            )\r\n                          }\r\n                          size=\"large\"\r\n                        >\r\n                          <FontAwesomeIcon icon={faMagic} />\r\n                        </IconButton>\r\n                      </span>\r\n                    </Tooltip>\r\n                  )}\r\n\r\n                {this.checkToolInConfig(\"DrawRectangleAnnotationTool\") &&\r\n                  galleryType !== \"FilesGallery\" &&\r\n                  !show3DViewer &&\r\n                  !showTilesGallery && (\r\n                    <Tooltip\r\n                      disableInteractive\r\n                      placement=\"left\"\r\n                      title={\r\n                        groupPermissions.canAnnotate\r\n                          ? annotationsAreReduced\r\n                            ? \"Sample Annotations can not be changed!\"\r\n                            : \"Draw rectangle annotation\"\r\n                          : \"No Permission!\"\r\n                      }\r\n                    >\r\n                      <span>\r\n                        <IconButton\r\n                          id=\"toolRectangleBtn\"\r\n                          className={classNames(\r\n                            classes.toolbarButton,\r\n                            activeTool === Tools.RECTANGLE_ROI &&\r\n                              classes.toolbarButtonChecked\r\n                          )}\r\n                          disabled={\r\n                            !groupPermissions.canAnnotate ||\r\n                            annotationsAreReduced\r\n                          }\r\n                          onClick={() =>\r\n                            onChangeTool(\r\n                              activeTool === Tools.RECTANGLE_ROI\r\n                                ? Tools.NONE\r\n                                : Tools.RECTANGLE_ROI\r\n                            )\r\n                          }\r\n                          size=\"large\"\r\n                        >\r\n                          <CheckBoxOutlineBlank\r\n                            className={classes.toolbarButtonIcon}\r\n                          />\r\n                        </IconButton>\r\n                      </span>\r\n                    </Tooltip>\r\n                  )}\r\n\r\n                {this.checkToolInConfig(\"DrawEllipseAnnotationTool\") &&\r\n                  galleryType !== \"FilesGallery\" &&\r\n                  !show3DViewer &&\r\n                  !showTilesGallery && (\r\n                    <Tooltip\r\n                      disableInteractive\r\n                      placement=\"left\"\r\n                      title={\r\n                        groupPermissions.canAnnotate\r\n                          ? annotationsAreReduced\r\n                            ? \"Sample Annotations can not be changed!\"\r\n                            : \"Draw circle annotation\"\r\n                          : \"No Permission!\"\r\n                      }\r\n                    >\r\n                      <span>\r\n                        <IconButton\r\n                          id=\"toolCircleBtn\"\r\n                          className={classNames(\r\n                            classes.toolbarButton,\r\n                            activeTool === Tools.ELLIPSE_ROI &&\r\n                              classes.toolbarButtonChecked\r\n                          )}\r\n                          disabled={\r\n                            !groupPermissions.canAnnotate ||\r\n                            annotationsAreReduced\r\n                          }\r\n                          onClick={() =>\r\n                            onChangeTool(\r\n                              activeTool === Tools.ELLIPSE_ROI\r\n                                ? Tools.NONE\r\n                                : Tools.ELLIPSE_ROI\r\n                            )\r\n                          }\r\n                          size=\"large\"\r\n                        >\r\n                          <FontAwesomeIcon icon={faCircle} mask={[\"far\"]} />\r\n                        </IconButton>\r\n                      </span>\r\n                    </Tooltip>\r\n                  )}\r\n\r\n                {this.checkToolInConfig(\"DrawRegionAnnotationTool\") &&\r\n                  galleryType !== \"FilesGallery\" &&\r\n                  !show3DViewer &&\r\n                  !showTilesGallery && (\r\n                    <Tooltip\r\n                      disableInteractive\r\n                      placement=\"left\"\r\n                      title={\r\n                        groupPermissions.canAnnotate\r\n                          ? annotationsAreReduced\r\n                            ? \"Sample Annotations can not be changed!\"\r\n                            : \"Draw region annotation [Ctrl]+[2]\"\r\n                          : \"No Permission!\"\r\n                      }\r\n                    >\r\n                      <span>\r\n                        <IconButton\r\n                          id=\"toolRegionBtn\"\r\n                          className={classNames(\r\n                            classes.toolbarButton,\r\n                            activeTool === Tools.REGION_ROI &&\r\n                              classes.toolbarButtonChecked\r\n                          )}\r\n                          disabled={\r\n                            !groupPermissions.canAnnotate ||\r\n                            annotationsAreReduced\r\n                          }\r\n                          onClick={() =>\r\n                            onChangeTool(\r\n                              activeTool === Tools.REGION_ROI\r\n                                ? Tools.NONE\r\n                                : Tools.REGION_ROI\r\n                            )\r\n                          }\r\n                          size=\"large\"\r\n                        >\r\n                          <FontAwesomeIcon icon={faDrawPolygon} />\r\n                        </IconButton>\r\n                      </span>\r\n                    </Tooltip>\r\n                  )}\r\n\r\n                {[\r\n                  \"DrawRegionGrowingAnnotationTool\",\r\n                  \"DrawGrabCutAnnotationTool\",\r\n                  \"DrawSAMAnnotationTool\",\r\n                ].some((tool) => this.checkToolInConfig(tool)) && (\r\n                  <Divider className={classes.divider} />\r\n                )}\r\n\r\n                {this.checkToolInConfig(\"DrawRegionGrowingAnnotationTool\") &&\r\n                  !show3DViewer &&\r\n                  !showTilesGallery &&\r\n                  galleryType !== \"FilesGallery\" && (\r\n                    <Tooltip\r\n                      disableInteractive\r\n                      placement=\"left\"\r\n                      title={\r\n                        groupPermissions.canAnnotate\r\n                          ? annotationsAreReduced\r\n                            ? \"Sample Annotations can not be changed!\"\r\n                            : \"Use region growing tool\"\r\n                          : \"No Permission!\"\r\n                      }\r\n                    >\r\n                      <span>\r\n                        <IconButton\r\n                          className={classNames(\r\n                            classes.toolbarButton,\r\n                            activeTool === Tools.REGIONGROWING_ROI &&\r\n                              classes.toolbarButtonChecked\r\n                          )}\r\n                          disabled={\r\n                            !groupPermissions.canAnnotate ||\r\n                            annotationsAreReduced\r\n                          }\r\n                          onClick={() =>\r\n                            onChangeTool(\r\n                              activeTool === Tools.REGIONGROWING_ROI\r\n                                ? Tools.NONE\r\n                                : Tools.REGIONGROWING_ROI\r\n                            )\r\n                          }\r\n                          size=\"large\"\r\n                        >\r\n                          <AllOutIcon className={classes.toolbarButtonIcon} />\r\n                        </IconButton>\r\n                      </span>\r\n                    </Tooltip>\r\n                  )}\r\n                {this.checkToolInConfig(\"RoiResizeTool\") &&\r\n                  !show3DViewer &&\r\n                  !showTilesGallery && (\r\n                    <Tooltip\r\n                      disableInteractive\r\n                      placement=\"left\"\r\n                      title=\"Use roi resize tool\"\r\n                    >\r\n                      <IconButton\r\n                        className={classNames(\r\n                          classes.toolbarButton,\r\n                          activeTool === Tools.ROIRESIZE &&\r\n                            classes.toolbarButtonChecked\r\n                        )}\r\n                        onClick={() =>\r\n                          onChangeTool(\r\n                            activeTool === Tools.ROIRESIZE\r\n                              ? Tools.NONE\r\n                              : Tools.ROIRESIZE\r\n                          )\r\n                        }\r\n                        size=\"large\"\r\n                      >\r\n                        <RadioButtonCheckedIcon\r\n                          className={classes.toolbarButtonIcon}\r\n                        />\r\n                      </IconButton>\r\n                    </Tooltip>\r\n                  )}\r\n\r\n                {this.checkToolInConfig(\"DrawGrabCutAnnotationTool\") &&\r\n                  !show3DViewer &&\r\n                  !showTilesGallery &&\r\n                  galleryType !== \"FilesGallery\" && (\r\n                    <Tooltip\r\n                      disableInteractive\r\n                      placement=\"left\"\r\n                      title={\r\n                        groupPermissions.canAnnotate\r\n                          ? annotationsAreReduced\r\n                            ? \"Sample Annotations can not be changed!\"\r\n                            : \"Use smart object segmentation tool\"\r\n                          : \"No Permission!\"\r\n                      }\r\n                    >\r\n                      <span>\r\n                        <IconButton\r\n                          id=\"toolGrabCutBtn\"\r\n                          className={classNames(\r\n                            classes.toolbarButton,\r\n                            activeTool === Tools.REGIONGRABCUT_ROI &&\r\n                              classes.toolbarButtonChecked\r\n                          )}\r\n                          disabled={\r\n                            !groupPermissions.canAnnotate ||\r\n                            annotationsAreReduced\r\n                          }\r\n                          onClick={() =>\r\n                            onChangeTool(\r\n                              activeTool === Tools.REGIONGRABCUT_ROI\r\n                                ? Tools.NONE\r\n                                : Tools.REGIONGRABCUT_ROI\r\n                            )\r\n                          }\r\n                          size=\"large\"\r\n                        >\r\n                          <CustomSvgIcon\r\n                            name=\"GrabCutIcon\"\r\n                            width=\"22.86\"\r\n                            height=\"23.8\"\r\n                            stroke=\"currentColor\"\r\n                            vertAlign=\"-4px\"\r\n                          />\r\n                        </IconButton>\r\n                      </span>\r\n                    </Tooltip>\r\n                  )}\r\n\r\n                {this.checkToolInConfig(\"DrawSAMAnnotationTool\") &&\r\n                  !show3DViewer &&\r\n                  !showTilesGallery &&\r\n                  galleryType !== \"FilesGallery\" && (\r\n                    <Tooltip\r\n                      disableInteractive\r\n                      placement=\"left\"\r\n                      title={\r\n                        groupPermissions.canAnnotate\r\n                          ? annotationsAreReduced\r\n                            ? \"Sample Annotations can not be changed!\"\r\n                            : \"Use AI segmentation tool\"\r\n                          : \"No Permission!\"\r\n                      }\r\n                    >\r\n                      <span>\r\n                        <IconButton\r\n                          id=\"toolSamBtn\"\r\n                          className={classNames(\r\n                            classes.toolbarButton,\r\n                            activeTool === Tools.REGIONSAM_ROI &&\r\n                              classes.toolbarButtonChecked\r\n                          )}\r\n                          disabled={!groupPermissions.canAnnotate}\r\n                          onClick={() =>\r\n                            onChangeTool(\r\n                              activeTool === Tools.REGIONSAM_ROI\r\n                                ? Tools.NONE\r\n                                : Tools.REGIONSAM_ROI\r\n                            )\r\n                          }\r\n                          size=\"large\"\r\n                        >\r\n                          <CustomSvgIcon\r\n                            name=\"SAMIcon\"\r\n                            width=\"22.86\"\r\n                            height=\"23.8\"\r\n                            stroke=\"currentColor\"\r\n                            vertAlign=\"-4px\"\r\n                          />\r\n                        </IconButton>\r\n                      </span>\r\n                    </Tooltip>\r\n                  )}\r\n\r\n                {this.checkToolInConfig(\"HeatmapTool\") &&\r\n                  !show3DViewer &&\r\n                  !showTilesGallery && (\r\n                    <Tooltip\r\n                      disableInteractive\r\n                      placement=\"left\"\r\n                      title=\"heatmap\"\r\n                    >\r\n                      <IconButton\r\n                        id=\"toolHeatmapBtn\"\r\n                        className={classNames(\r\n                          classes.toolbarButton,\r\n                          activeTool === Tools.HEATMAP &&\r\n                            classes.toolbarButtonChecked\r\n                        )}\r\n                        onClick={() =>\r\n                          onChangeTool(\r\n                            activeTool === Tools.HEATMAP\r\n                              ? Tools.NONE\r\n                              : Tools.HEATMAP\r\n                          )\r\n                        }\r\n                        size=\"large\"\r\n                      >\r\n                        <CustomSvgIcon\r\n                          name=\"HeatmapIcon\"\r\n                          width=\"22.86\"\r\n                          height=\"23.8\"\r\n                          stroke=\"currentColor\"\r\n                          vertAlign=\"-4px\"\r\n                        />\r\n                      </IconButton>\r\n                    </Tooltip>\r\n                  )}\r\n\r\n                {(showGallery || showTilesGallery || show3DViewer) && (\r\n                  <Divider className={classes.divider} />\r\n                )}\r\n\r\n                {/*viewerConfig &&\r\n              viewerConfig.project.structures[selectedLayer] &&\r\n              viewerConfig.project.structures[selectedLayer].tools.map(\r\n                tool =>\r\n                  tool.name &&\r\n                  tool.name === \"alm_gallery_tool\" &&\r\n                  showGallery &&\r\n                  !this.props.alruns &&\r\n                  this.checkToolInConfig(\"OtherTools\") && (\r\n                    <Tooltip disableInteractive placement=\"left\"\r\n                      key={tool.name}\r\n                      title={tool.tooltip ? tool.tooltip : \"not defined\"}\r\n                    >\r\n                      <IconButton\r\n                        className={classNames(\r\n                          classes.toolbarButton,\r\n                          activeTool === tool.name &&\r\n                            classes.toolbarButtonChecked\r\n                        )}\r\n                        style={{ padding: 0 }}\r\n                        onClick={() => {\r\n                          onChangeTool(\r\n                            activeTool === tool.name ? Tools.NONE : tool.name\r\n                          );\r\n                        }}\r\n                      >\r\n                        <InlineSVG src={tool.icon} />\r\n                      </IconButton>\r\n                    </Tooltip>\r\n                  )\r\n                      )*/}\r\n              </React.Fragment>\r\n            )}\r\n\r\n            {showGallery || showTilesGallery ? (\r\n              <span></span>\r\n            ) : (\r\n              <span>\r\n                <Divider className={classes.divider} />\r\n                {viewerConfig &&\r\n                viewerConfig.project.annotations !== \"pixel\" ? (\r\n                  <React.Fragment>\r\n                    {/*this.checkToolInConfig(\"DrawRectangleAnnotationTool\") && (\r\n                  <Tooltip disableInteractive placement=\"left\" title=\"draw rectangle annotation\">\r\n                    <IconButton\r\n                      className={classNames(\r\n                        classes.toolbarButton,\r\n                        activeTool === Tools.RECT_ROI &&\r\n                          classes.toolbarButtonChecked\r\n                      )}\r\n                      onClick={() =>\r\n                        onChangeTool(\r\n                          activeTool === Tools.RECT_ROI\r\n                            ? Tools.NONE\r\n                            : Tools.RECT_ROI\r\n                        )\r\n                      }\r\n                    >\r\n                      <FontAwesomeIcon icon={faPlus} />\r\n                    </IconButton>\r\n                  </Tooltip>\r\n                    )*/}\r\n                  </React.Fragment>\r\n                ) : (\r\n                  <React.Fragment>\r\n                    {this.checkToolInConfig(\"FillHoleAnnotationTool\") &&\r\n                      !show3DViewer && (\r\n                        <Tooltip\r\n                          disableInteractive\r\n                          placement=\"left\"\r\n                          title={\r\n                            groupPermissions.canAnnotate\r\n                              ? annotationsAreReduced\r\n                                ? \"Sample Annotations can not be changed!\"\r\n                                : \"Fill hole annotation\"\r\n                              : \"No Permission!\"\r\n                          }\r\n                        >\r\n                          <span>\r\n                            <IconButton\r\n                              id=\"toolFillBtn\"\r\n                              className={classNames(\r\n                                classes.toolbarButton,\r\n                                activeTool === Tools.FILL &&\r\n                                  classes.toolbarButtonChecked\r\n                              )}\r\n                              disabled={\r\n                                !groupPermissions.canAnnotate ||\r\n                                annotationsAreReduced\r\n                              }\r\n                              onClick={() =>\r\n                                onChangeTool(\r\n                                  activeTool === Tools.FILL\r\n                                    ? Tools.NONE\r\n                                    : Tools.FILL\r\n                                )\r\n                              }\r\n                              size=\"large\"\r\n                            >\r\n                              <FontAwesomeIcon icon={faFillDrip} />\r\n                            </IconButton>\r\n                          </span>\r\n                        </Tooltip>\r\n                      )}\r\n\r\n                    {this.checkToolInConfig(\"SelectRegionAnnotationTool\") &&\r\n                      !show3DViewer && (\r\n                        <Tooltip\r\n                          disableInteractive\r\n                          placement=\"left\"\r\n                          title={\r\n                            groupPermissions.canAnnotate\r\n                              ? annotationsAreReduced\r\n                                ? \"Sample Annotations can not be changed!\"\r\n                                : \"Select region annotation [Ctrl]+[3]\"\r\n                              : \"No Permission!\"\r\n                          }\r\n                        >\r\n                          <span>\r\n                            <IconButton\r\n                              id=\"toolSelectBtn\"\r\n                              className={classNames(\r\n                                classes.toolbarButton,\r\n                                activeTool === Tools.SELECTION_ROI &&\r\n                                  classes.toolbarButtonChecked\r\n                              )}\r\n                              disabled={\r\n                                !groupPermissions.canAnnotate ||\r\n                                annotationsAreReduced\r\n                              }\r\n                              onClick={() => {\r\n                                onChangeTool(\r\n                                  activeTool === Tools.SELECTION_ROI\r\n                                    ? Tools.NONE\r\n                                    : Tools.SELECTION_ROI\r\n                                );\r\n                                // make showsubtypes true for selected structure an unfold subtypes\r\n                                structures[selectedLayer].showSubtypes = true;\r\n                                this.showSubtypes(structures[selectedLayer]);\r\n                              }}\r\n                              size=\"large\"\r\n                            >\r\n                              <FontAwesomeIcon icon={faMousePointer} />\r\n                            </IconButton>\r\n                          </span>\r\n                        </Tooltip>\r\n                      )}\r\n\r\n                    {this.checkToolInConfig(\"CopyRegionAnnotationTool\") &&\r\n                      !show3DViewer && (\r\n                        <Tooltip\r\n                          disableInteractive\r\n                          placement=\"left\"\r\n                          title={\r\n                            groupPermissions.canAnnotate\r\n                              ? annotationsAreReduced\r\n                                ? \"Sample Annotations can not be changed!\"\r\n                                : \"Copy region annotation [Ctrl]+[4]\"\r\n                              : \"No Permission!\"\r\n                          }\r\n                        >\r\n                          <span>\r\n                            <IconButton\r\n                              id=\"toolCopyBtn\"\r\n                              className={classNames(\r\n                                classes.toolbarButton,\r\n                                activeTool === Tools.COPY_ROI &&\r\n                                  classes.toolbarButtonChecked\r\n                              )}\r\n                              disabled={\r\n                                !groupPermissions.canAnnotate ||\r\n                                annotationsAreReduced\r\n                              }\r\n                              onClick={() =>\r\n                                onChangeTool(\r\n                                  activeTool === Tools.COPY_ROI\r\n                                    ? Tools.NONE\r\n                                    : Tools.COPY_ROI\r\n                                )\r\n                              }\r\n                              size=\"large\"\r\n                            >\r\n                              <FontAwesomeIcon icon={faClone} />\r\n                            </IconButton>\r\n                          </span>\r\n                        </Tooltip>\r\n                      )}\r\n\r\n                    {this.checkToolInConfig(\"AITrainingTool\") && !show3DViewer && (\r\n                      <Tooltip\r\n                        disableInteractive\r\n                        placement=\"left\"\r\n                        title={\r\n                          groupPermissions.canTrainModel\r\n                            ? \"Train AI model\"\r\n                            : \"No Permission!\"\r\n                        }\r\n                      >\r\n                        <span>\r\n                          <IconButton\r\n                            id=\"toolAITrainingBtn\"\r\n                            className={classNames(\r\n                              classes.toolbarButton,\r\n                              activeTool === Tools.AITRAINING &&\r\n                                classes.toolbarButtonChecked\r\n                            )}\r\n                            disabled={!groupPermissions.canTrainModel}\r\n                            onClick={() =>\r\n                              onChangeTool(\r\n                                activeTool === Tools.AITRAINING\r\n                                  ? Tools.NONE\r\n                                  : Tools.AITRAINING\r\n                              )\r\n                            }\r\n                            size=\"large\"\r\n                          >\r\n                            <FontAwesomeIcon icon={faBrain} />\r\n                          </IconButton>\r\n                        </span>\r\n                      </Tooltip>\r\n                    )}\r\n\r\n                    {this.checkToolInConfig(\"GridTool\") &&\r\n                      !this.props.tiles.getHistoClassificationStarted() &&\r\n                      !this.props.resultTab.getGridExists() &&\r\n                      !show3DViewer && (\r\n                        <Tooltip\r\n                          disableInteractive\r\n                          placement=\"left\"\r\n                          title={\r\n                            groupPermissions.canAnnotate\r\n                              ? annotationsAreReduced\r\n                                ? \"Sample Annotations can not be changed!\"\r\n                                : \"Create grid\"\r\n                              : \"No Permission!\"\r\n                          }\r\n                        >\r\n                          <span>\r\n                            <IconButton\r\n                              id=\"toolGridBtn\"\r\n                              className={classNames(\r\n                                classes.toolbarButton,\r\n                                activeTool === Tools.GRIDTOOL &&\r\n                                  classes.toolbarButtonChecked\r\n                              )}\r\n                              disabled={\r\n                                !groupPermissions.canAnnotate ||\r\n                                annotationsAreReduced\r\n                              }\r\n                              onClick={() => {\r\n                                onChangeTool(\r\n                                  activeTool === Tools.GRIDTOOL\r\n                                    ? Tools.NONE\r\n                                    : Tools.GRIDTOOL\r\n                                );\r\n                              }}\r\n                              size=\"large\"\r\n                            >\r\n                              <FontAwesomeIcon icon={faThLarge} />\r\n                            </IconButton>\r\n                          </span>\r\n                        </Tooltip>\r\n                      )}\r\n\r\n                    {this.checkToolInConfig(\"GridAnnotationTool\") &&\r\n                      !show3DViewer && (\r\n                        <Tooltip\r\n                          disableInteractive\r\n                          placement=\"left\"\r\n                          title={\r\n                            groupPermissions.canAnnotate\r\n                              ? annotationsAreReduced\r\n                                ? \"Sample Annotations can not be changed!\"\r\n                                : \"Create annotation grid\"\r\n                              : \"No Permission!\"\r\n                          }\r\n                        >\r\n                          <span>\r\n                            <IconButton\r\n                              id=\"toolAnnoGridBtn\"\r\n                              className={classNames(\r\n                                classes.toolbarButton,\r\n                                activeTool === Tools.GRIDANNOTATIONTOOL &&\r\n                                  classes.toolbarButtonChecked\r\n                              )}\r\n                              disabled={\r\n                                !groupPermissions.canAnnotate ||\r\n                                annotationsAreReduced\r\n                              }\r\n                              onClick={() =>\r\n                                onChangeTool(\r\n                                  activeTool === Tools.GRIDANNOTATIONTOOL\r\n                                    ? Tools.NONE\r\n                                    : Tools.GRIDANNOTATIONTOOL\r\n                                )\r\n                              }\r\n                              size=\"large\"\r\n                            >\r\n                              <FontAwesomeIcon icon={faTh} />\r\n                            </IconButton>\r\n                          </span>\r\n                        </Tooltip>\r\n                      )}\r\n                  </React.Fragment>\r\n                )}\r\n\r\n                <Divider\r\n                  className={classes.divider}\r\n                  style={{ backgroundColor: \"blue\" }}\r\n                />\r\n\r\n                {this.checkToolInConfig(\"AICockpit\") && (\r\n                  <div>\r\n                    {/* <Tooltip\r\n                      disableInteractive\r\n                      placement=\"left\"\r\n                      title=\"Train new AI model\"\r\n                    >\r\n                      <IconButton\r\n                        className={classes.toolbarButton}\r\n                        // onClick={() => this.openAITrainingPopUp()}\r\n                        size=\"large\"\r\n                      >\r\n                        <FontAwesomeIcon icon={faBrain} />\r\n                      </IconButton>\r\n                    </Tooltip> */}\r\n                    <Tooltip\r\n                      disableInteractive\r\n                      placement=\"left\"\r\n                      title=\"Go to AI cockpit\"\r\n                    >\r\n                      <IconButton\r\n                        className={classes.toolbarButton}\r\n                        onClick={() => {\r\n                          this.props.history.push(\"/ai_view\");\r\n                        }}\r\n                        size=\"large\"\r\n                      >\r\n                        <FontAwesomeIcon icon={faChartBar} />\r\n                      </IconButton>\r\n                    </Tooltip>\r\n                    <Tooltip\r\n                      disableInteractive\r\n                      placement=\"left\"\r\n                      title=\"AI models overview\"\r\n                    >\r\n                      <IconButton\r\n                        className={classes.toolbarButton}\r\n                        // onClick={() => this.ADDFUNCTIONHERE()}\r\n                        size=\"large\"\r\n                      >\r\n                        <FontAwesomeIcon icon={faTable} />\r\n                      </IconButton>\r\n                    </Tooltip>\r\n                  </div>\r\n                )}\r\n\r\n                <Divider\r\n                  className={classes.divider}\r\n                  style={{ backgroundColor: \"blue\" }}\r\n                />\r\n\r\n                {structures &&\r\n                  structures[selectedLayer] &&\r\n                  structures[selectedLayer].tools.map(\r\n                    (tool) =>\r\n                      tool.name &&\r\n                      tools[tool.name] &&\r\n                      tool.name !== \"alm_gallery_tool\" &&\r\n                      tool.name !== \"iam_ai_inference\" &&\r\n                      this.checkToolInConfig(\"OtherTools\") &&\r\n                      !show3DViewer && (\r\n                        <Tooltip\r\n                          disableInteractive\r\n                          placement=\"left\"\r\n                          key={tool.name}\r\n                          title={\r\n                            groupPermissions.canRunJob\r\n                              ? tools[tool.name].toolConfig.tooltip\r\n                                ? tools[tool.name].toolConfig.tooltip\r\n                                : \"not defined\"\r\n                              : \"No Permission!\"\r\n                          }\r\n                        >\r\n                          <span>\r\n                            <IconButton\r\n                              className={classNames(\r\n                                classes.toolbarButton,\r\n                                activeTool === tool.name &&\r\n                                  classes.toolbarButtonChecked\r\n                              )}\r\n                              style={{ padding: 0 }}\r\n                              disabled={\r\n                                !groupPermissions.canRunJob ||\r\n                                annotationsAreReduced\r\n                              }\r\n                              onClick={() => {\r\n                                onChangeTool(\r\n                                  activeTool === tool.name\r\n                                    ? Tools.NONE\r\n                                    : tool.name\r\n                                );\r\n                              }}\r\n                              size=\"large\"\r\n                            >\r\n                              <InlineSVG\r\n                                src={tools[tool.name].toolConfig.icon}\r\n                              />\r\n                            </IconButton>\r\n                          </span>\r\n                        </Tooltip>\r\n                      )\r\n                  )}\r\n                {structures &&\r\n                  structures[selectedLayer] &&\r\n                  this.props.aiUsedStructures.map(\r\n                    (struct, idx) =>\r\n                      struct.structureName &&\r\n                      tools[\"iam_ai_inference\"] &&\r\n                      structures[selectedLayer].label ===\r\n                        struct.structureName &&\r\n                      structures[selectedLayer].id === struct.id &&\r\n                      this.checkToolInConfig(\"OtherTools\") &&\r\n                      !show3DViewer && (\r\n                        <Tooltip\r\n                          disableInteractive\r\n                          placement=\"left\"\r\n                          key={idx}\r\n                          title={\r\n                            groupPermissions.canAnnotate\r\n                              ? tools[\"iam_ai_inference\"].toolConfig.tooltip\r\n                                ? tools[\"iam_ai_inference\"].toolConfig.tooltip\r\n                                : \"not defined\"\r\n                              : \"No Permission!\"\r\n                          }\r\n                        >\r\n                          <span>\r\n                            <IconButton\r\n                              className={classNames(\r\n                                classes.toolbarButton,\r\n                                activeTool === \"iam_ai_inference\" &&\r\n                                  classes.toolbarButtonChecked\r\n                              )}\r\n                              style={{ padding: 0 }}\r\n                              disabled={!groupPermissions.canAnnotate}\r\n                              onClick={() => {\r\n                                onChangeTool(\r\n                                  activeTool === \"iam_ai_inference\"\r\n                                    ? Tools.NONE\r\n                                    : \"iam_ai_inference\",\r\n                                  {\r\n                                    selectedModel: struct.selectedModel,\r\n                                    selectedVersion: struct.selectedVersion,\r\n                                  }\r\n                                );\r\n                              }}\r\n                              size=\"large\"\r\n                            >\r\n                              <InlineSVG\r\n                                src={tools[\"iam_ai_inference\"].toolConfig.icon}\r\n                              />\r\n                            </IconButton>\r\n                          </span>\r\n                        </Tooltip>\r\n                      )\r\n                  )}\r\n              </span>\r\n            )}\r\n\r\n            {false &&\r\n              this.checkToolInConfig(\"PassiveLearningTool\") &&\r\n              !show3DViewer &&\r\n              showGallery &&\r\n              !this.props.alruns && (\r\n                <Tooltip\r\n                  disableInteractive\r\n                  placement=\"left\"\r\n                  title={\r\n                    groupPermissions.canTrainModel\r\n                      ? \"Start training and apply model manually\"\r\n                      : \"No Permission!\"\r\n                  }\r\n                >\r\n                  <span>\r\n                    <IconButton\r\n                      className={classes.toolbarButton}\r\n                      disabled={!groupPermissions.canTrainModel}\r\n                      onClick={() => this.onStartTraining()}\r\n                      size=\"large\"\r\n                    >\r\n                      <FontAwesomeIcon icon={faBrain} />\r\n                    </IconButton>\r\n                  </span>\r\n                </Tooltip>\r\n              )}\r\n\r\n            {this.checkToolInConfig(\"ApplyModelTool\") &&\r\n              !show3DViewer &&\r\n              !showGallery &&\r\n              !this.props.alruns && (\r\n                <Tooltip\r\n                  disableInteractive\r\n                  placement=\"left\"\r\n                  title={\r\n                    groupPermissions.canRunJob\r\n                      ? \"Apply model manually\"\r\n                      : \"No Permission!\"\r\n                  }\r\n                >\r\n                  <span>\r\n                    <IconButton\r\n                      className={classes.toolbarButton}\r\n                      disabled={!groupPermissions.canRunJob}\r\n                      onClick={() => this.ApplyModel()}\r\n                      size=\"large\"\r\n                    >\r\n                      <FontAwesomeIcon icon={faPlayCircle} />\r\n                    </IconButton>\r\n                  </span>\r\n                </Tooltip>\r\n              )}\r\n\r\n            {this.checkToolInConfig(\"SaveImagesTool\") &&\r\n              !show3DViewer &&\r\n              showGallery &&\r\n              !this.props.alruns && (\r\n                <Tooltip\r\n                  disableInteractive\r\n                  placement=\"left\"\r\n                  title={\r\n                    groupPermissions.canRunJob\r\n                      ? \"Export images (all scenes)\"\r\n                      : \"No Permission!\"\r\n                  }\r\n                >\r\n                  <span>\r\n                    <IconButton\r\n                      className={classes.toolbarButton}\r\n                      disabled={!groupPermissions.canRunJob}\r\n                      onClick={() => this.onSaveImages(true)}\r\n                      size=\"large\"\r\n                    >\r\n                      <FontAwesomeIcon icon={faDownload} />\r\n                    </IconButton>\r\n                  </span>\r\n                </Tooltip>\r\n              )}\r\n            {this.checkToolInConfig(\"SaveImagesTool\") &&\r\n              !show3DViewer &&\r\n              showGallery &&\r\n              !this.props.alruns && (\r\n                <Tooltip\r\n                  disableInteractive\r\n                  placement=\"left\"\r\n                  title=\"Export images (current scene)\"\r\n                >\r\n                  <IconButton\r\n                    className={classes.toolbarButton}\r\n                    onClick={() => this.onSaveImages(false)}\r\n                    size=\"large\"\r\n                  >\r\n                    <FontAwesomeIcon icon={faFileDownload} />\r\n                  </IconButton>\r\n                </Tooltip>\r\n              )}\r\n          </div>\r\n        </div>\r\n        <div>\r\n          <div\r\n            className={classes.toolBarRow}\r\n            ref={(bottomElement) => {\r\n              this.bottomElement = bottomElement;\r\n            }}\r\n          >\r\n            {!showGallery && !showTilesGallery && !show3DViewer ? (\r\n              <div>\r\n                {this.checkToolInConfig(\"CommentTool\") && (\r\n                  <React.Fragment>\r\n                    <Divider className={classes.divider} />\r\n                    <Tooltip\r\n                      disableInteractive\r\n                      placement=\"left\"\r\n                      title={\r\n                        groupPermissions.canComment\r\n                          ? \"Add comments\"\r\n                          : \"No Permission!\"\r\n                      }\r\n                    >\r\n                      <span>\r\n                        <IconButton\r\n                          className={classNames(\r\n                            classes.toolbarButton,\r\n                            activeTool === Tools.COMMENT_ROI &&\r\n                              classes.toolbarButtonChecked\r\n                          )}\r\n                          disabled={!groupPermissions.canComment}\r\n                          onClick={() =>\r\n                            onChangeTool(\r\n                              activeTool === Tools.COMMENT_ROI\r\n                                ? Tools.NONE\r\n                                : Tools.COMMENT_ROI\r\n                            )\r\n                          }\r\n                          size=\"large\"\r\n                        >\r\n                          <RateReviewIcon\r\n                            className={classes.toolbarButtonIcon}\r\n                          />\r\n                        </IconButton>\r\n                      </span>\r\n                    </Tooltip>\r\n                  </React.Fragment>\r\n                )}\r\n\r\n                {this.props.showFullscreen && (\r\n                  <Tooltip disableInteractive placement=\"left\" title=\"Overlay\">\r\n                    <IconButton\r\n                      className={classes.toolbarButton}\r\n                      onClick={() => this.props.onToggleOverlay()}\r\n                      size=\"large\"\r\n                    >\r\n                      {this.props.showOverlay ? (\r\n                        <FlipIcon\r\n                          className={classes.toolbarButtonIcon}\r\n                          style={{\r\n                            color: \"#0673C1\",\r\n                            transform: \"rotate(270deg)\",\r\n                          }}\r\n                        />\r\n                      ) : (\r\n                        <FlipIcon\r\n                          className={classes.toolbarButtonIcon}\r\n                          style={{ transform: \"rotate(270deg)\" }}\r\n                        />\r\n                      )}\r\n                    </IconButton>\r\n                  </Tooltip>\r\n                )}\r\n\r\n                {this.checkToolInConfig(\"LandmarkTool\") && (\r\n                  <Tooltip\r\n                    disableInteractive\r\n                    placement=\"left\"\r\n                    title=\"Add Landmarks\"\r\n                  >\r\n                    <IconButton\r\n                      className={classNames(\r\n                        classes.toolbarButton,\r\n                        activeTool === Tools.LANDMARK &&\r\n                          classes.toolbarButtonChecked\r\n                      )}\r\n                      onClick={() =>\r\n                        onChangeTool(\r\n                          activeTool === Tools.LANDMARK\r\n                            ? Tools.NONE\r\n                            : Tools.LANDMARK\r\n                        )\r\n                      }\r\n                      size=\"large\"\r\n                    >\r\n                      <PinDropIcon className={classes.toolbarButtonIcon} />\r\n                    </IconButton>\r\n                  </Tooltip>\r\n                )}\r\n\r\n                {this.props.showFullscreen && this.props.showOverlay && (\r\n                  <Tooltip\r\n                    disableInteractive\r\n                    placement=\"left\"\r\n                    title=\"WindowTool\"\r\n                  >\r\n                    <IconButton\r\n                      className={classes.toolbarButton}\r\n                      onClick={() => this.props.onToggleWindowTool()}\r\n                      size=\"large\"\r\n                    >\r\n                      {this.props.showWindowTool ? (\r\n                        <SelectAllIcon\r\n                          className={classes.toolbarButtonIcon}\r\n                          style={{\r\n                            color: \"#0673C1\",\r\n                          }}\r\n                        />\r\n                      ) : (\r\n                        <SelectAllIcon className={classes.toolbarButtonIcon} />\r\n                      )}\r\n                    </IconButton>\r\n                  </Tooltip>\r\n                )}\r\n                {this.checkToolInConfig(\"ScreenshotTool\") && (\r\n                  <Tooltip\r\n                    disableInteractive\r\n                    placement=\"left\"\r\n                    title=\"Download current view [Ctrl]+[P]\"\r\n                  >\r\n                    <IconButton\r\n                      id=\"toolPrintBtn\"\r\n                      className={classes.toolbarButton}\r\n                      onClick={onSaveScreenshot}\r\n                      size=\"large\"\r\n                    >\r\n                      <FontAwesomeIcon icon={faCamera} />\r\n                    </IconButton>\r\n                  </Tooltip>\r\n                )}\r\n                {this.checkToolInConfig(\"ScreenshotTool\") && (\r\n                  <Tooltip\r\n                    disableInteractive\r\n                    placement=\"left\"\r\n                    title=\"Stream current view\"\r\n                  >\r\n                    <IconButton\r\n                      className={classNames(\r\n                        classes.toolbarButton,\r\n                        activeTool === Tools.STREAMVIEW &&\r\n                          classes.toolbarButtonChecked\r\n                      )}\r\n                      onClick={() =>\r\n                        onChangeTool(\r\n                          activeTool === Tools.STREAMVIEW\r\n                            ? Tools.NONE\r\n                            : Tools.STREAMVIEW\r\n                        )\r\n                      }\r\n                      size=\"large\"\r\n                    >\r\n                      <CastIcon />\r\n                    </IconButton>\r\n                  </Tooltip>\r\n                )}\r\n\r\n                <Divider className={classes.divider} />\r\n\r\n                {this.checkToolInConfig(\"ZoomOriginalTool\") && showZoomLevels && (\r\n                  <Tooltip\r\n                    disableInteractive\r\n                    placement=\"left\"\r\n                    title=\"Zoom 100% [Shift]+[*]\"\r\n                  >\r\n                    <IconButton\r\n                      id=\"toolZoomOriginalBtn\"\r\n                      className={classes.toolbarButton}\r\n                      onClick={onZoomOriginal}\r\n                      size=\"large\"\r\n                    >\r\n                      <div className={classes.textIcon}>1:1</div>\r\n                    </IconButton>\r\n                  </Tooltip>\r\n                )}\r\n\r\n                {this.checkToolInConfig(\"ZoomOriginalTool\") && showZoomLevels && (\r\n                  <Tooltip disableInteractive placement=\"left\" title=\"Zoom 75%\">\r\n                    <IconButton\r\n                      id=\"toolZoom75lBtn\"\r\n                      className={classes.toolbarButton}\r\n                      onClick={() => this.props.onZoomOneToN(0.25)}\r\n                      size=\"large\"\r\n                    >\r\n                      <div className={classes.textIcon}>1:4</div>\r\n                    </IconButton>\r\n                  </Tooltip>\r\n                )}\r\n\r\n                {this.checkToolInConfig(\"ZoomOriginalTool\") && showZoomLevels && (\r\n                  <Tooltip disableInteractive placement=\"left\" title=\"Zoom 10%\">\r\n                    <IconButton\r\n                      id=\"toolZoom10Btn\"\r\n                      className={classes.toolbarButton}\r\n                      onClick={() => this.props.onZoomOneToN(0.1)}\r\n                      size=\"large\"\r\n                    >\r\n                      <div className={classes.textIcon}>1:10</div>\r\n                    </IconButton>\r\n                  </Tooltip>\r\n                )}\r\n\r\n                {this.checkToolInConfig(\"ZoomFitTool\") && showZoomLevels && (\r\n                  <Tooltip\r\n                    disableInteractive\r\n                    placement=\"left\"\r\n                    title=\"Zoom fit [Shift]+[0]\"\r\n                  >\r\n                    <IconButton\r\n                      id=\"toolZoomFitBtn\"\r\n                      className={classes.toolbarButton}\r\n                      onClick={onZoomFit}\r\n                      size=\"large\"\r\n                    >\r\n                      <ZoomOutMap className={classes.toolbarButtonIcon} />\r\n                    </IconButton>\r\n                  </Tooltip>\r\n                )}\r\n\r\n                {this.checkToolInConfig(\"ZoomInOutTool\") && showZoomLevels && (\r\n                  <Tooltip\r\n                    disableInteractive\r\n                    placement=\"left\"\r\n                    title=\"Zoom in [Shift]+[+]\"\r\n                  >\r\n                    <IconButton\r\n                      id=\"toolZoomInBtn\"\r\n                      className={classes.toolbarButton}\r\n                      onClick={onZoomDelta.bind(this, -1)}\r\n                      size=\"large\"\r\n                    >\r\n                      <ZoomIn className={classes.toolbarButtonIcon} />\r\n                    </IconButton>\r\n                  </Tooltip>\r\n                )}\r\n                {this.checkToolInConfig(\"ZoomInOutTool\") && showZoomLevels && (\r\n                  <Tooltip\r\n                    disableInteractive\r\n                    placement=\"left\"\r\n                    title=\"Zoom out [Shift]+[-]\"\r\n                  >\r\n                    <IconButton\r\n                      id=\"toolZoomOutBtn\"\r\n                      className={classes.toolbarButton}\r\n                      onClick={onZoomDelta.bind(this, 1)}\r\n                      size=\"large\"\r\n                    >\r\n                      <ZoomOut className={classes.toolbarButtonIcon} />\r\n                    </IconButton>\r\n                  </Tooltip>\r\n                )}\r\n\r\n                <Divider className={classes.divider} />\r\n\r\n                {this.checkToolInConfig(\"SaveTool\") && showToggleSideBar && (\r\n                  <Tooltip\r\n                    disableInteractive\r\n                    placement=\"left\"\r\n                    title=\"Toggle sidebar\"\r\n                  >\r\n                    <IconButton\r\n                      className={classes.toolbarButton}\r\n                      onClick={onToggleSideBar}\r\n                      size=\"large\"\r\n                    >\r\n                      <FontAwesomeIcon icon={faExchangeAlt} />\r\n                    </IconButton>\r\n                  </Tooltip>\r\n                )}\r\n\r\n                <Divider className={classes.divider} />\r\n\r\n                {showUndoRedo && (\r\n                  <Tooltip\r\n                    disableInteractive\r\n                    placement=\"left\"\r\n                    title=\"Undo [Ctrl]+[Z]\"\r\n                  >\r\n                    <span>\r\n                      <IconButton\r\n                        className={classNames(\r\n                          classes.toolbarButton,\r\n                          classes.toolbarButtonChecked\r\n                        )}\r\n                        disabled={!projectHistory.canUndo}\r\n                        onClick={projectHistory.undo}\r\n                        size=\"large\"\r\n                      >\r\n                        <UndoIcon className={classes.toolbarButtonIcon} />\r\n                      </IconButton>\r\n                    </span>\r\n                  </Tooltip>\r\n                )}\r\n\r\n                {showUndoRedo && (\r\n                  <Tooltip\r\n                    disableInteractive\r\n                    placement=\"left\"\r\n                    title=\"Redo [Ctrl]+[Y]\"\r\n                  >\r\n                    <span>\r\n                      <IconButton\r\n                        className={classNames(\r\n                          classes.toolbarButton,\r\n                          classes.toolbarButtonChecked\r\n                        )}\r\n                        disabled={!projectHistory.canRedo}\r\n                        onClick={projectHistory.redo}\r\n                        size=\"large\"\r\n                      >\r\n                        <RedoIcon className={classes.toolbarButtonIcon} />\r\n                      </IconButton>\r\n                    </span>\r\n                  </Tooltip>\r\n                )}\r\n\r\n                {this.checkToolInConfig(\"SaveTool\") && showSaveTool && (\r\n                  <Tooltip\r\n                    disableInteractive\r\n                    placement=\"left\"\r\n                    title={\r\n                      groupPermissions.canAnnotate\r\n                        ? \"Save [Ctrl]+[S]\"\r\n                        : \"No Permission!\"\r\n                    }\r\n                  >\r\n                    <span>\r\n                      <IconButton\r\n                        className={classNames(\r\n                          classes.toolbarButton,\r\n                          classes.toolbarButtonChecked\r\n                        )}\r\n                        disabled={!groupPermissions.canAnnotate}\r\n                        onClick={onSave}\r\n                        size=\"large\"\r\n                      >\r\n                        <Save className={classes.toolbarButtonIcon} />\r\n                      </IconButton>\r\n                    </span>\r\n                  </Tooltip>\r\n                )}\r\n              </div>\r\n            ) : (\r\n              <div style={{ position: \"absolute\", bottom: 0 }}>\r\n                <Divider className={classes.divider} />\r\n                {this.checkToolInConfig(\"SaveTool\") &&\r\n                  showToggleSideBar &&\r\n                  !show3DViewer && (\r\n                    <Tooltip\r\n                      disableInteractive\r\n                      placement=\"left\"\r\n                      title=\"Toggle sidebar\"\r\n                    >\r\n                      <IconButton\r\n                        className={classes.toolbarButton}\r\n                        onClick={onToggleSideBar}\r\n                        size=\"large\"\r\n                      >\r\n                        <FontAwesomeIcon icon={faExchangeAlt} />\r\n                      </IconButton>\r\n                    </Tooltip>\r\n                  )}\r\n                <Divider className={classes.divider} />\r\n                {this.checkToolInConfig(\"SaveTool\") &&\r\n                  showSaveTool &&\r\n                  !show3DViewer && (\r\n                    <Tooltip\r\n                      disableInteractive\r\n                      placement=\"left\"\r\n                      title=\"Save [Ctrl]+[S]\"\r\n                    >\r\n                      <IconButton\r\n                        className={classNames(\r\n                          classes.toolbarButton,\r\n                          classes.toolbarButtonChecked\r\n                        )}\r\n                        onClick={() => this.saveProject()}\r\n                        size=\"large\"\r\n                      >\r\n                        <Save className={classes.toolbarButtonIcon} />\r\n                      </IconButton>\r\n                    </Tooltip>\r\n                  )}\r\n              </div>\r\n            )}\r\n          </div>\r\n        </div>\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\n// define the component's interface\r\nVerticalToolBar.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  verticalToolBarWidth: PropTypes.number,\r\n  viewerConfig: PropTypes.object,\r\n  structures: PropTypes.array,\r\n  // change view layout\r\n  onToggleTimeBar: PropTypes.func,\r\n  showTimeBar: PropTypes.bool,\r\n  displayTimeBar: PropTypes.bool,\r\n  onToggleMiniMap: PropTypes.func,\r\n  showObjectIdx: PropTypes.bool,\r\n  showMiniMap: PropTypes.bool,\r\n  onToggleScaleBar: PropTypes.func,\r\n  showScaleBar: PropTypes.bool,\r\n  showGallery: PropTypes.bool,\r\n  galleryType: PropTypes.string,\r\n  show3DViewer: PropTypes.bool,\r\n  showPointCloud: PropTypes.bool,\r\n  onToggleZStackBar: PropTypes.func,\r\n  showZStackBar: PropTypes.bool,\r\n  displayZStackBar: PropTypes.bool,\r\n  onToggleImageInfo: PropTypes.func,\r\n  onToggleResultTable: PropTypes.func,\r\n  showImageInfo: PropTypes.bool,\r\n  showZoomBar: PropTypes.bool,\r\n  onToggleGallery: PropTypes.func,\r\n  // tools\r\n  onChangeTool: PropTypes.func,\r\n  activeTool: PropTypes.string,\r\n  // change layer\r\n  selectedLayer: PropTypes.number,\r\n  // screenshot functions\r\n  onSaveScreenshot: PropTypes.func,\r\n  // zoom functions\r\n  onZoomOriginal: PropTypes.func,\r\n  onZoomOneToN: PropTypes.func,\r\n  onZoomDelta: PropTypes.func,\r\n  onZoomFit: PropTypes.func,\r\n  // toggle Sidebar\r\n  onToggleSideBar: PropTypes.func,\r\n  // save changes\r\n  onSave: PropTypes.func,\r\n  resizeSideBar: PropTypes.func,\r\n  // from withTiles\r\n  tiles: PropTypes.object,\r\n  updateToolBarWidth: PropTypes.func,\r\n  isImporting: PropTypes.bool,\r\n  //not ordered\r\n  project: PropTypes.object,\r\n  spinloader: PropTypes.object,\r\n  setAlruns: PropTypes.func,\r\n  roiLayers: PropTypes.array,\r\n  saveChangesGallery: PropTypes.func,\r\n  projectId: PropTypes.string,\r\n  fileId: PropTypes.string,\r\n  trainingWarning: PropTypes.func,\r\n  applyDL: PropTypes.func,\r\n  tools: PropTypes.array,\r\n  persistentStorage: PropTypes.object,\r\n  projectContext: PropTypes.object,\r\n  onToggle3DViewer: PropTypes.func,\r\n  onToggleMeshView: PropTypes.func,\r\n  showTilesGallery: PropTypes.bool,\r\n  projectHistory: PropTypes.object,\r\n  ome: PropTypes.object,\r\n  activeTab: PropTypes.number,\r\n  rendererRef: PropTypes.object,\r\n  setGalleryTool: PropTypes.func,\r\n  changeToSelectedFile: PropTypes.func,\r\n  onToggleTilesGallery: PropTypes.func,\r\n  splitscreenCount: PropTypes.number,\r\n  onToggleFullscreen: PropTypes.func,\r\n  showFullscreen: PropTypes.bool,\r\n  resultTab: PropTypes.object,\r\n  alruns: PropTypes.bool,\r\n  onToggleOverlay: PropTypes.func,\r\n  showOverlay: PropTypes.bool,\r\n  onToggleWindowTool: PropTypes.func,\r\n  showWindowTool: PropTypes.bool,\r\n  aiUsedStructures: PropTypes.array,\r\n  history: PropTypes.object,\r\n  annotationsAreReduced: PropTypes.bool,\r\n};\r\n\r\nexport default withAllViewerContexts(\r\n  withTiles(withResultTab(withStyles(styles)(VerticalToolBar)))\r\n);\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport classNames from \"classnames\";\r\n\r\nimport withStyles from \"@mui/styles/withStyles\";\r\nimport withTheme from \"@mui/styles/withTheme\";\r\n\r\nimport DragIndicator from \"@mui/icons-material/DragIndicator\";\r\nimport Draggable from \"react-draggable\";\r\nimport { Resizable } from \"react-resizable\";\r\n\r\nimport {\r\n  List,\r\n  ListItem,\r\n  ListItemText,\r\n  Typography,\r\n  IconButton,\r\n} from \"@mui/material\";\r\n\r\nimport { Remove, PlayArrow } from \"@mui/icons-material\";\r\n\r\nimport { getParentIndexLayer } from \"../utils/StructuresUtils\";\r\n\r\nconst styles = {\r\n  root: {\r\n    position: \"absolute\",\r\n    top: 76,\r\n    left: 5,\r\n    height: 400,\r\n    width: 500,\r\n    border: \"2px solid rgb(85, 85, 85)\",\r\n    opacity: 0.8,\r\n    backgroundColor: \"#000000\",\r\n    color: \"#ffffff\",\r\n  },\r\n  dragIndicator: {\r\n    color: \"#fff\",\r\n    position: \"absolute\",\r\n    top: 5,\r\n    right: 0,\r\n    cursor: \"grab\",\r\n  },\r\n  grabbing: {\r\n    cursor: \"grabbing\",\r\n  },\r\n  resizableContainer: {\r\n    \"& .react-resizable-handle\": {\r\n      pointerEvents: \"all\",\r\n    },\r\n    \"& .react-resizable-handle-se::before\": {\r\n      content: \"''\",\r\n      display: \"block\",\r\n      position: \"absolute\",\r\n      bottom: 3,\r\n      right: 3,\r\n      width: 6,\r\n      height: 6,\r\n      borderBottom: \"1px solid #fff\",\r\n      borderRight: \"1px solid #fff\",\r\n    },\r\n  },\r\n};\r\n\r\nclass ResultTable extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n\r\n    this.state = {\r\n      grabbing: false,\r\n      tableSize: {\r\n        width: 500,\r\n        height: 499,\r\n      },\r\n      structuredTableValues: props.structures.map((structure) => {\r\n        return {\r\n          label: structure.label,\r\n          id: structure.id,\r\n          percentage: 0,\r\n          numberObjects: 0,\r\n        };\r\n      }),\r\n    };\r\n\r\n    window.updateResultTable = this.updateResultTable;\r\n  }\r\n\r\n  componentDidMount = () => {\r\n    this.updateResultTable();\r\n  };\r\n\r\n  updateResultTable = () => {\r\n    const { structures } = this.props;\r\n    let stateObject = [];\r\n    structures.forEach((structure) => {\r\n      let percentageNumber = this.getPercentageAndNumber(structure);\r\n      let obj = {\r\n        label: structure.label,\r\n        id: structure.id,\r\n        percentage: percentageNumber.percentage,\r\n        numberObjects: percentageNumber.numberObjects,\r\n      };\r\n      stateObject.push(obj);\r\n    });\r\n    this.setState({ structuredTableValues: stateObject });\r\n  };\r\n\r\n  findChilds = (str) => {\r\n    // return direct classification subtypes\r\n    return this.props.structures.filter(\r\n      (element) =>\r\n        element.subtypeLevel === str.subtypeLevel + 1 &&\r\n        element.parentId === str.id &&\r\n        element.classificationSubtype\r\n    );\r\n  };\r\n\r\n  findAllSubtypes = (structure) => {\r\n    // get all subtypes of selectedLayer (also subsubtypes)\r\n\r\n    // first get all direct childs\r\n    let childs = this.findChilds(structure);\r\n    let allChilds = [];\r\n\r\n    // search for childs of childs until no childs are checked for childs\r\n    while (childs.length !== 0) {\r\n      // code block to be executed\r\n      childs = childs.concat(this.findChilds(childs[0]));\r\n      if (!allChilds.includes(childs[0]) && childs[0].classificationSubtype) {\r\n        allChilds.push(childs[0]);\r\n      }\r\n      childs.shift();\r\n    }\r\n    return allChilds;\r\n  };\r\n\r\n  getPercentageAndNumber = (structure) => {\r\n    const { allRoiLayers, fileId, structures } = this.props;\r\n\r\n    let percNumb = { percentage: 0, numberObjects: 0 };\r\n\r\n    // get number of all objects of structure\r\n    let parentLayer = getParentIndexLayer(structure, structures);\r\n    if (structure.classificationSubtype) {\r\n      // for subtypes\r\n      // get number of objects:\r\n\r\n      // get all childNames to find rois\r\n      let childIds = [];\r\n      let childLabels = [];\r\n      this.findAllSubtypes(structure).forEach((element) => {\r\n        childIds.push(element.id);\r\n        childLabels.push(element.label);\r\n      });\r\n      childIds.push(structure.id); // push current structure\r\n      childLabels.push(structure.label); // push current structure\r\n\r\n      percNumb.numberObjects = allRoiLayers[fileId][\r\n        parentLayer\r\n      ].layer.regionRois.filter(\r\n        (element) => childIds.includes(element.structureId) /* ||\r\n          childLabels.includes(element.subtypeName)*/\r\n      ).length;\r\n\r\n      // get percentage:\r\n      // get number of parent objects\r\n      let parentIdx = structures.findIndex(\r\n        (element) => element.id === structure.parentId\r\n      );\r\n\r\n      let numberParentObjects = this.getPercentageAndNumber(\r\n        structures[parentIdx]\r\n      ).numberObjects;\r\n\r\n      if (percNumb.numberObjects > 0 && numberParentObjects > 0) {\r\n        percNumb.percentage = percNumb.numberObjects / numberParentObjects;\r\n      } else {\r\n        percNumb.percentage = 0;\r\n      }\r\n    } else {\r\n      // for parent structures\r\n      percNumb.numberObjects =\r\n        allRoiLayers[fileId][parentLayer].layer.regionRois.length;\r\n      percNumb.percentage = \"-\";\r\n    }\r\n\r\n    return percNumb;\r\n  };\r\n\r\n  renderIcon = (structure) => {\r\n    if (structure.isSubtype) {\r\n      return (\r\n        <IconButton\r\n          style={{ background: \"none\", color: \"#FFFFFF\", padding: \"2px\" }}\r\n          size=\"large\"\r\n        >\r\n          {structure.classificationSubtype ? (\r\n            <PlayArrow style={{ fontSize: \"small\" }} />\r\n          ) : (\r\n            <Remove style={{ fontSize: \"small\" }} />\r\n          )}\r\n        </IconButton>\r\n      );\r\n    }\r\n  };\r\n\r\n  renderRow = (structure, structureIdx) => {\r\n    const { structures, selectedLayer } = this.props;\r\n    let childs = this.findChilds(structures[selectedLayer]);\r\n    let childIds = childs.map((obj) => {\r\n      return obj.id;\r\n    });\r\n    let isSelected =\r\n      childIds.includes(structure.id) ||\r\n      structure.id === structures[selectedLayer].id;\r\n\r\n    return (\r\n      <ListItem\r\n        key={structureIdx}\r\n        style={{\r\n          paddingLeft: structures[structureIdx].subtypeLevel * 10 + 10,\r\n          color: \"#FFFFFF\",\r\n          border: isSelected ? \"2px dashed white\" : \"none\",\r\n        }}\r\n      >\r\n        {this.renderIcon(structures[structureIdx])}\r\n        <ListItemText primary={structure.label + \":\"} />\r\n        <Typography\r\n          style={{\r\n            marginRight: \"100px\",\r\n          }}\r\n        >\r\n          {structure.percentage === \"-\"\r\n            ? \"\"\r\n            : (structure.percentage * 100).toFixed(2) + \"%\"}\r\n        </Typography>\r\n        <Typography\r\n          style={{\r\n            marginRight: \"40px\",\r\n          }}\r\n        >\r\n          {structure.numberObjects}\r\n        </Typography>\r\n      </ListItem>\r\n    );\r\n  };\r\n\r\n  onResize = (event, { size }) => {\r\n    // resize element\r\n    let minSizeWidth = 240;\r\n    let minSizeHeight = 150;\r\n    let maxSizeWidth = 600;\r\n    let maxSizeHeight = 1200;\r\n    size.width = size.width < minSizeWidth ? minSizeWidth : size.width;\r\n    size.width = size.width > maxSizeWidth ? maxSizeWidth : size.width;\r\n    size.height = size.height < minSizeHeight ? minSizeHeight : size.height;\r\n    size.height = size.height > maxSizeHeight ? maxSizeHeight : size.height;\r\n\r\n    this.setState({ tableSize: size });\r\n  };\r\n\r\n  render() {\r\n    const { classes } = this.props;\r\n    const { grabbing, structuredTableValues } = this.state;\r\n\r\n    return (\r\n      <Draggable\r\n        handle=\".handle\"\r\n        onStart={() => this.setState({ grabbing: true })}\r\n        onStop={() => this.setState({ grabbing: false })}\r\n      >\r\n        <Resizable\r\n          className={classes.resizableContainer}\r\n          height={this.state.tableSize.height}\r\n          width={this.state.tableSize.width}\r\n          onResize={this.onResize}\r\n          resizeHandles={[\"se\"]}\r\n        >\r\n          <div\r\n            ref={(c) => (this.root = c)}\r\n            className={classNames(classes.root, grabbing && classes.grabbing)}\r\n            style={{\r\n              height: this.state.tableSize.height,\r\n              width: this.state.tableSize.width,\r\n            }}\r\n          >\r\n            <div\r\n              style={{\r\n                overflow: \"auto\",\r\n                maxHeight: this.state.tableSize.height - 4,\r\n                marginRight: \"20px\",\r\n                direction: \"rtl\",\r\n              }}\r\n            >\r\n              <List style={{ direction: \"ltr\" }}>\r\n                <ListItem key=\"structureItem\">\r\n                  <ListItemText primary={\"Structure\"} />\r\n                  <Typography style={{ marginRight: \"60px\" }}>\r\n                    Percentage\r\n                  </Typography>\r\n                  <Typography style={{ marginRight: \"10px\" }}>\r\n                    Objects\r\n                  </Typography>\r\n                </ListItem>\r\n                {structuredTableValues.map((structure, index) =>\r\n                  this.renderRow(structure, index)\r\n                )}\r\n              </List>\r\n            </div>\r\n            <DragIndicator\r\n              className={classNames(\r\n                \"handle\",\r\n                classes.dragIndicator,\r\n                grabbing && classes.grabbing\r\n              )}\r\n            />\r\n          </div>\r\n        </Resizable>\r\n      </Draggable>\r\n    );\r\n  }\r\n}\r\n\r\n// define the component's interface\r\nResultTable.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  structures: PropTypes.array,\r\n  allRoiLayers: PropTypes.object,\r\n  fileId: PropTypes.string,\r\n  selectedLayer: PropTypes.number,\r\n};\r\n\r\nexport default withTheme(withStyles(styles)(ResultTable));\r\n","\r\n\r\nfunction getDist(pointA, pointB) {\r\n\tconst dx = pointA[0] - pointB[0];\r\n\tconst dy = pointA[1] - pointB[1];\r\n\treturn Math.sqrt(dx*dx + dy*dy);\r\n}\r\n\r\nfunction getCurveDistances(startIndex, points) {\r\n\tconst distAr = [];\r\n\tfor (let i = 0; i < points.length; i++) {\r\n\t\tconst indexA = (startIndex + i) % points.length;\r\n\t\tconst indexB = (startIndex + i + 1) % points.length;\r\n\t\tconst pointA = points[indexA];\r\n\t\tconst pointB = points[indexB];\r\n\t\tconst dist = getDist(pointA, pointB);\r\n\t\tdistAr.push(dist);\r\n\t}\r\n\treturn distAr;\r\n}\r\n\r\nfunction getStartInterpolPoint(distAr, absPlace) {\r\n\tlet accLen = 0;\r\n\tfor (let i = 0; i < distAr.length; i++) {\r\n\t\taccLen += distAr[i];\r\n\t\tif (absPlace <= accLen) {\r\n\t\t\treturn {\r\n\t\t\t\tdistIndex: i,\r\n\t\t\t\tabsPlaceDist: absPlace - (accLen - distAr[i]),\r\n\t\t\t};\r\n\t\t}\r\n\t}\r\n\treturn {\r\n\t\tdistIndex: distAr.length - 1,\r\n\t\tabsPlaceDist: distAr[distAr.length - 1],\r\n\t};\r\n}\r\n\r\nfunction getPointByPlaceInCurve(startIndex, points, place) {\r\n\tconst distAr = getCurveDistances(startIndex, points);\r\n\tconst distSum = distAr.reduce((a, b) => a + b, 0);\r\n\tconst absPlace = place * distSum;\r\n\tconst { distIndex, absPlaceDist } = getStartInterpolPoint(distAr, absPlace);\r\n\tconst indA = (startIndex + distIndex) % points.length;\r\n\tconst indB = (startIndex + distIndex + 1) % points.length;\r\n\tconst pA = points[indA];\r\n\tconst pB = points[indB];\r\n\tconst k = absPlaceDist / distAr[distIndex];\r\n\treturn [\r\n\t\tpA[0] + (pB[0] - pA[0]) * k,\r\n\t\tpA[1] + (pB[1] - pA[1]) * k,\r\n\t];\r\n}\r\n\r\n\r\nfunction linearInterpol(pStart, pEnd, tStart, tEnd, t) {\r\n  const k = (t - tStart) / (tEnd - tStart);\r\n  return [\r\n    pStart[0] + (pEnd[0] - pStart[0]) * k,\r\n    pStart[1] + (pEnd[1] - pStart[1]) * k,\r\n  ]\r\n}\r\n\r\nexport function getFigure(figureA, figureB, startPointIndA, startPointIndB, \r\n\tfigAIsClockwise, figBIsClockwise, pointsCount, t1, t2, t) {\r\n  if (t > t2) {\r\n    t = t2;\r\n  }\r\n  if (t < t1) {\r\n    t = t1;\r\n  }\r\n  const delta = 1/pointsCount;\r\n  const figure = [];\r\n  const clockwiseSignA = figAIsClockwise ? -1 : 1;\r\n  const clockwiseSignB = figBIsClockwise ? -1 : 1;\r\n  for (let xInd = 0; xInd < pointsCount; xInd++) {\r\n\tconst xAInd = (startPointIndA + clockwiseSignA * xInd + pointsCount) % pointsCount; \r\n\tconst xBInd = (startPointIndB + clockwiseSignB * xInd + pointsCount) % pointsCount; \r\n\tconst xA = xAInd * delta;\r\n\tconst xB = xBInd * delta;\r\n    const pointFrom = getPointByPlaceInCurve(0, figureA, xA);\r\n    const pointTo = getPointByPlaceInCurve(0, figureB, xB);\r\n    const point = linearInterpol(pointFrom, pointTo, t1, t2, t);\r\n    figure.push(point);\r\n  }\r\n  return figure;\r\n}\r\n\r\nexport function predictStartPointIndex(figure, pointsCount) {\r\n\tconst delta = 1/pointsCount;\r\n\t//const figure = [];\r\n\tlet xMin = Infinity;\r\n\tlet xMax = -Infinity;\r\n\tlet yMin = Infinity;\r\n\tlet yMax = -Infinity;\r\n\tfor (let pInd = 0; pInd < pointsCount; pInd++) {\r\n\t\tconst d = pInd * delta;\r\n\t\tconst p = getPointByPlaceInCurve(0, figure, d);\r\n\t\tif (p[0] < xMin) {\r\n\t\t\txMin = p[0];\r\n\t\t}\r\n\t\tif (p[0] > xMax) {\r\n\t\t\txMax = p[0];\r\n\t\t}\r\n\t\tif (p[1] < yMin) {\r\n\t\t\tyMin = p[1];\r\n\t\t}\r\n\t\tif (p[1] > yMax) {\r\n\t\t\tyMax = p[1];\r\n\t\t}\r\n\t}\r\n\r\n\tlet minDist = Infinity;\r\n\tlet startPointIndex = 0;\r\n\tconst anchorPoint = [(xMin + xMax) / 2, yMin];\r\n\tfor (let pInd = 0; pInd < pointsCount; pInd++) {\r\n\t\tconst d = pInd * delta;\r\n\t\tconst p = getPointByPlaceInCurve(0, figure, d);\r\n\t\tconst dist = getDist(anchorPoint, p);\r\n\t\tif (dist < minDist) {\r\n\t\t\tminDist = dist;\r\n\t\t\tstartPointIndex = pInd;\r\n\t\t}\r\n\t}\r\n\treturn startPointIndex;\r\n}\r\n\r\nfunction getVec(pointA, pointB) {\r\n\treturn [pointB[0] - pointA[0], pointB[1] - pointA[1]];\r\n}\r\n\r\nexport function traversalPolylineClockwise(fig) {\r\n\tlet a = theMostLeftPointIndex(fig);\r\n\tlet aNext = (a + 1) % fig.length;\r\n\tlet aPrev = (a - 1 + fig.length) % fig.length;\r\n\tconst vPrev = getVec(fig[a], fig[aPrev]);\r\n\tconst vNext = getVec(fig[a], fig[aNext]);\r\n\treturn vPrev[0] * vNext[1] - vPrev[1] * vNext[0] < 0;\r\n}\r\n\r\nfunction theMostLeftPointIndex(fig) {\r\n\tlet ind = 0;\r\n\tlet xMin = Infinity;\r\n\tfor (let i = 0; i < fig.length; i++) {\r\n\t\tif (fig[ind][0] < xMin) {\r\n\t\t\txMin = fig[ind][0];\r\n\t\t\tind = i;\r\n\t\t}\t\r\n\t}\t\r\n\treturn ind;\r\n}\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n\r\nconst styles = {\r\n  root: {\r\n    backgroundColor: \"transparent\",\r\n    margin: \"20px 0px\",\r\n    height: \"30px\",\r\n    position: \"relative\",\r\n  },\r\n\r\n  keyFrame: {\r\n    position: \"absolute\",\r\n    backgroundColor: \"black\",\r\n    borderRadius: \"100%\",\r\n  },\r\n\r\n  interval: {\r\n    position: \"absolute\",\r\n  },\r\n};\r\n\r\nclass TimeChart extends Component {\r\n  render() {\r\n    const {\r\n      classes,\r\n      structure,\r\n      keyFrames,\r\n      frameWidth,\r\n      interpolatedIntervals,\r\n      isSelected,\r\n    } = this.props;\r\n    const timeChartHeight = 30;\r\n    const keyFrameElSize = 8; //Math.min(frameWidth, timeChartHeight) / 2;\r\n    const keyFrameEls = [];\r\n    for (let keyFrame in keyFrames) {\r\n      keyFrameEls.push(\r\n        <div\r\n          key={keyFrame}\r\n          className={classes.keyFrame}\r\n          style={{\r\n            left:\r\n              Math.floor(\r\n                keyFrame * frameWidth + (frameWidth - keyFrameElSize) / 2\r\n              ) + \"px\",\r\n            width: keyFrameElSize + \"px\",\r\n            height: keyFrameElSize + \"px\",\r\n            top: Math.floor((timeChartHeight - keyFrameElSize) / 2) + \"px\",\r\n          }}\r\n        ></div>\r\n      );\r\n    }\r\n\r\n    const intervalEls = [];\r\n    const intervalElHeight = 2;\r\n    for (let interval of interpolatedIntervals) {\r\n      intervalEls.push(\r\n        <div\r\n          key={interval[0]}\r\n          className={classes.interval}\r\n          style={{\r\n            left: Math.floor(interval[0] * frameWidth + frameWidth / 2) + \"px\",\r\n            width: (interval[1] - interval[0]) * frameWidth + \"px\",\r\n            height: intervalElHeight + \"px\",\r\n            top: Math.floor((timeChartHeight - intervalElHeight) / 2) + \"px\",\r\n            backgroundColor: structure.color,\r\n          }}\r\n        ></div>\r\n      );\r\n    }\r\n\r\n    return (\r\n      <div\r\n        className={classes.root}\r\n        style={{\r\n          border: isSelected\r\n            ? \"2px dashed\" + structure.color\r\n            : \"2px solid \" + structure.color,\r\n          backgroundColor: structure.color + \"50\",\r\n        }}\r\n      >\r\n        {intervalEls}\r\n        {keyFrameEls}\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nTimeChart.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  structure: PropTypes.object,\r\n  keyFrames: PropTypes.object,\r\n  interpolatedIntervals: PropTypes.array,\r\n  frameWidth: PropTypes.number,\r\n  isSelected: PropTypes.bool,\r\n};\r\n\r\nexport default withStyles(styles)(TimeChart);\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n\r\nimport { IconButton, TextField, Tooltip } from \"@mui/material\";\r\nimport {\r\n  PlayCircleOutline,\r\n  PauseCircleOutline,\r\n  ArrowLeft,\r\n  ArrowRight,\r\n} from \"@mui/icons-material\";\r\n\r\nimport {\r\n  getFigure,\r\n  predictStartPointIndex,\r\n  traversalPolylineClockwise,\r\n} from \"../utils/GeometricInterpolation\";\r\nimport { RegionROI } from \"../utils/ROI\";\r\nimport RBush from \"rbush\";\r\n\r\nimport TimeChart from \"./TimeChart\";\r\n\r\nconst tongueWidth = 30;\r\n\r\nconst styles = {\r\n  root: {\r\n    padding: 0,\r\n  },\r\n\r\n  stepWalker: {\r\n    backgroundColor: \"rgb(211,211,211)\",\r\n    position: \"relative\",\r\n    height: 50,\r\n  },\r\n\r\n  container: {\r\n    position: \"relative\",\r\n    // add scrolling, if needed\r\n    overflow: \"auto\",\r\n    boxShadow: \"0px -2px 10px 0px rgba(0,0,0,0.29)\",\r\n    //border: \"2px solid rgb(0, 0, 200)\",\r\n    height: \"calc(100% - 80px)\",\r\n    background: \"white\",\r\n  },\r\n\r\n  stepLeft: {\r\n    position: \"absolute\",\r\n    left: 5,\r\n    top: 6,\r\n    padding: 0,\r\n    color: \"rgb(6,115,193)\",\r\n  },\r\n\r\n  timeCounter: {\r\n    textAlign: \"center\",\r\n    color: \"rgb(6,115,193)\",\r\n  },\r\n\r\n  modePanel: {\r\n    backgroundColor: \"rgb(211,211,211)\",\r\n    position: \"relative\",\r\n    boxShadow: \"0px -2px 10px 0px rgba(0,0,0,0.29)\",\r\n    height: 30,\r\n  },\r\n\r\n  interpolate: {\r\n    padding: 0,\r\n    borderWidth: 0,\r\n    outline: 0,\r\n    display: \"inline-block\",\r\n    position: \"relative\",\r\n    textAlign: \"center\",\r\n    left: 10,\r\n    fontSize: 12 + \"px\",\r\n    top: 2,\r\n    color: \"rgb(6,115,193)\",\r\n    height: 20,\r\n    width: 100,\r\n    \"&:hover\": {\r\n      backgroundColor: \"#fff\",\r\n    },\r\n  },\r\n  framerate: {\r\n    marginLeft: 20,\r\n    color: \"red\",\r\n    width: 60,\r\n    \"& div\": {\r\n      color: \"black\",\r\n      marginTop: 4,\r\n      width: 52,\r\n    },\r\n    \"& label\": {\r\n      color: \"rgb(6,115,193) !important\",\r\n      fontSize: 10,\r\n      lineHeight: \"12px\",\r\n      padding: 0,\r\n      margin: 0,\r\n    },\r\n    \"& input\": {\r\n      padding: \"6px 0 0px\",\r\n      fontSize: 12,\r\n    },\r\n  },\r\n\r\n  playButtons: {\r\n    display: \"flex\",\r\n    justifyContent: \"center\",\r\n  },\r\n\r\n  playPauseForward: {\r\n    marginLeft: 10,\r\n    display: \"inline-block\",\r\n    padding: 0,\r\n    color: \"rgb(6,115,193)\",\r\n  },\r\n\r\n  playPauseBackward: {\r\n    display: \"inline-block\",\r\n    padding: 0,\r\n    color: \"rgb(6,115,193)\",\r\n    transform: \"scale(-1, 1)\",\r\n  },\r\n\r\n  stepRight: {\r\n    position: \"absolute\",\r\n    right: 5,\r\n    top: 6,\r\n    padding: 0,\r\n    color: \"rgb(6,115,193)\",\r\n  },\r\n\r\n  resizeTongue: {\r\n    backgroundColor: \"rgb(211,211,211)\",\r\n    position: \"absolute\",\r\n    height: 9,\r\n    width: tongueWidth,\r\n    marginLeft: -tongueWidth / 2,\r\n    bottom: 0,\r\n    left: \"50%\",\r\n    boxShadow: \"0px -2px 10px -2px rgba(0,0,0,0.29)\",\r\n    //boxShadow: \"1px -13px 19px 0px rgba(0,0,0,0.55)\",\r\n    cursor: \"row-resize\",\r\n    zIndex: 999999,\r\n  },\r\n\r\n  resizingLine: {\r\n    backgroundColor: \"#888\",\r\n    marginTop: 4,\r\n    marginLeft: 4,\r\n    marginRight: 4,\r\n    height: 1,\r\n  },\r\n};\r\n\r\nconst frameMinWidth = 14;\r\nconst frameMaxWidth = 28;\r\n\r\nclass TimeLineTool extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n    this.state = {\r\n      dimensions: null,\r\n      isResizing: false,\r\n      resizePos: 0,\r\n    };\r\n  }\r\n\r\n  componentDidMount() {\r\n    document.addEventListener(\"mousemove\", this.handleResizeMouseMove);\r\n    document.addEventListener(\"mouseup\", this.handleResizeMouseUp);\r\n    this.setState({\r\n      dimensions: {\r\n        width: this.container.offsetWidth,\r\n        height: this.container.offsetHeight,\r\n      },\r\n    });\r\n  }\r\n\r\n  componentWillUnmount() {\r\n    document.removeEventListener(\"mousemove\", this.handleResizeMouseMove);\r\n    document.removeEventListener(\"mouseup\", this.handleResizeMouseUp);\r\n  }\r\n\r\n  setPosByMouse(coordX) {\r\n    const { dimensions } = this.state;\r\n    const { ome, onChangeT } = this.props;\r\n    let frameWidth = Math.floor(dimensions.width / ome.sizeT);\r\n    if (frameWidth < frameMinWidth) {\r\n      frameWidth = frameMinWidth;\r\n    }\r\n    if (frameWidth > frameMaxWidth) {\r\n      frameWidth = frameMaxWidth;\r\n    }\r\n    // rect with borders in context of client window of the browser\r\n    const rect = this.innerContainer.getBoundingClientRect();\r\n    let x = Math.floor(\r\n      (coordX - rect.left - this.innerContainer.clientLeft) / frameWidth\r\n    );\r\n    if (x < 0) {\r\n      // x is frame number\r\n      x = 0;\r\n    }\r\n    if (x >= ome.sizeT) {\r\n      x = ome.sizeT - 1;\r\n    }\r\n\r\n    onChangeT(x);\r\n  }\r\n\r\n  handleMouseDown = (ev) => {\r\n    if (ev.button !== 0) {\r\n      return;\r\n    }\r\n    this.setPosByMouse(ev.clientX);\r\n  };\r\n\r\n  handleMouseMove = (ev) => {\r\n    if (!(ev.buttons & 1)) {\r\n      return;\r\n    }\r\n    this.setPosByMouse(ev.clientX);\r\n  };\r\n\r\n  searchPrevKeyFrame(curT, structureIndex, frameArray) {\r\n    for (let i = curT - 1; i >= 0; i--) {\r\n      const layer = this.findLayer(structureIndex, frameArray[i]);\r\n      if (layer && layer.isKeyFrame) {\r\n        return i;\r\n      }\r\n    }\r\n    return -1;\r\n  }\r\n\r\n  searchNextKeyFrame(curT, structureIndex, frameArray) {\r\n    for (let i = curT + 1; i < this.props.ome.sizeT; i++) {\r\n      const layer = this.findLayer(structureIndex, frameArray[i]);\r\n      if (layer && layer.isKeyFrame) {\r\n        return i;\r\n      }\r\n    }\r\n    return -1;\r\n  }\r\n\r\n  findLayer(structureIndex, frameArrayItem) {\r\n    if (!frameArrayItem || !this.props.structures[structureIndex]) {\r\n      return null;\r\n    }\r\n    for (let layer of frameArrayItem) {\r\n      if (layer.id === this.props.structures[structureIndex].id) {\r\n        return layer;\r\n      }\r\n    }\r\n    return null;\r\n  }\r\n\r\n  getOrCreateFrameArrayItem(frame) {\r\n    if (this.props.frameArray[frame]) {\r\n      return this.props.frameArray[frame];\r\n    }\r\n    this.props.frameArray[frame] = [];\r\n    return this.props.frameArray[frame];\r\n  }\r\n\r\n  getOrCreateRoiLayer(frameArrayItem, structureIndex) {\r\n    const roiLayer = frameArrayItem.find(\r\n      (x) => x.id === this.props.structures[structureIndex].id\r\n    );\r\n    if (roiLayer) {\r\n      return roiLayer;\r\n    }\r\n    const newRoiLayer = {\r\n      id: this.props.structures[structureIndex].id,\r\n      layer: {\r\n        inverted: false,\r\n        regionRois: [],\r\n      },\r\n      tree: new RBush(),\r\n    };\r\n    frameArrayItem.push(newRoiLayer);\r\n    return newRoiLayer;\r\n  }\r\n\r\n  handleInterpolation = () => {\r\n    const frameArray = this.props.frameArray;\r\n    const selectedLayer = this.props.selectedLayer;\r\n    const curT = Math.floor(this.props.time);\r\n    const layer = this.findLayer(selectedLayer, frameArray[curT]);\r\n    if (!layer || (layer.isKeyFrame && layer.layer.regionRois.length > 0)) {\r\n      return;\r\n    }\r\n    const prevKeyFrame = this.searchPrevKeyFrame(\r\n      curT,\r\n      selectedLayer,\r\n      frameArray\r\n    );\r\n    const nextKeyFrame = this.searchNextKeyFrame(\r\n      curT,\r\n      selectedLayer,\r\n      frameArray\r\n    );\r\n    if (prevKeyFrame < 0 || nextKeyFrame < 0) {\r\n      return;\r\n    }\r\n    const regionRoisStart = this.findLayer(\r\n      selectedLayer,\r\n      frameArray[prevKeyFrame]\r\n    ).layer.regionRois;\r\n    const regionRoisEnd = this.findLayer(\r\n      selectedLayer,\r\n      frameArray[nextKeyFrame]\r\n    ).layer.regionRois;\r\n    const figureCount = Math.min(regionRoisStart.length, regionRoisEnd.length);\r\n    const isSubtype =\r\n      this.props.structures[this.props.selectedLayer].isSubtype &&\r\n      this.props.structures[this.props.selectedLayer].classificationSubtype;\r\n    const name = isSubtype\r\n      ? this.props.structures[this.props.selectedLayer].label\r\n      : \"\";\r\n    const color = this.props.structures[this.props.selectedLayer].color;\r\n    const pointsCount = 100;\r\n    for (let frame = prevKeyFrame + 1; frame < nextKeyFrame; frame++) {\r\n      const frameArrayItem = this.getOrCreateFrameArrayItem(frame);\r\n      const requiredLayer = this.getOrCreateRoiLayer(\r\n        frameArrayItem,\r\n        selectedLayer\r\n      );\r\n      requiredLayer.layer.regionRois = [];\r\n    }\r\n    for (let figureIndex = 0; figureIndex < figureCount; figureIndex++) {\r\n      const figureStart = regionRoisStart[figureIndex];\r\n      const figureEnd = regionRoisEnd[figureIndex];\r\n      const startPointIndexA = predictStartPointIndex(\r\n        figureStart.regions,\r\n        pointsCount\r\n      );\r\n      const startPointIndexB = predictStartPointIndex(\r\n        figureEnd.regions,\r\n        pointsCount\r\n      );\r\n      const figAIsClockwise = traversalPolylineClockwise(figureStart.regions);\r\n      const figBIsClockwise = traversalPolylineClockwise(figureEnd.regions);\r\n      for (let frame = prevKeyFrame + 1; frame < nextKeyFrame; frame++) {\r\n        const interpolatedFigure = getFigure(\r\n          figureStart.regions,\r\n          figureEnd.regions,\r\n          startPointIndexA,\r\n          startPointIndexB,\r\n          figAIsClockwise,\r\n          figBIsClockwise,\r\n          pointsCount,\r\n          prevKeyFrame,\r\n          nextKeyFrame,\r\n          frame\r\n        );\r\n        const frameArrayItem = this.getOrCreateFrameArrayItem(frame);\r\n        const requiredLayer = this.getOrCreateRoiLayer(\r\n          frameArrayItem,\r\n          selectedLayer\r\n        );\r\n        const regionRoi = new RegionROI({\r\n          regions: interpolatedFigure,\r\n          color1: color,\r\n          subtype: isSubtype,\r\n          name: name,\r\n          structureId: this.props.structures[selectedLayer].id,\r\n        });\r\n\r\n        requiredLayer.layer.regionRois.push(regionRoi);\r\n      }\r\n    }\r\n    this.forceUpdate();\r\n  };\r\n\r\n  handleResizeMouseDown = (e) => {\r\n    this.setState({\r\n      isResizing: true,\r\n      resizePos: e.pageY,\r\n    });\r\n  };\r\n\r\n  handleResizeMouseMove = (e) => {\r\n    if (!this.state.isResizing) {\r\n      return;\r\n    }\r\n    const newResizePos = e.pageY;\r\n    const deltaY = this.state.resizePos - newResizePos;\r\n    this.setState({\r\n      resizePos: newResizePos,\r\n    });\r\n    this.props.resizeTimeLine(deltaY, false);\r\n  };\r\n\r\n  handleResizeMouseUp = (e) => {\r\n    if (!this.state.isResizing) {\r\n      return;\r\n    }\r\n    const newResizePos = e.pageY;\r\n    const deltaY = this.state.resizePos - newResizePos;\r\n    this.setState({\r\n      resizePos: newResizePos,\r\n      isResizing: false,\r\n    });\r\n    this.props.resizeTimeLine(deltaY, true);\r\n  };\r\n\r\n  renderContent() {\r\n    const { dimensions } = this.state;\r\n    const {\r\n      //classes, // will be added by withStyles func\r\n      // ome.sizeT --- count of frames in the videosequence\r\n      ome,\r\n      // time --- current frame\r\n      time,\r\n      structures,\r\n      frameArray,\r\n    } = this.props;\r\n    let frameWidth = dimensions.width / ome.sizeT;\r\n    let innerWidth = \"100%\";\r\n    if (frameWidth < frameMinWidth) {\r\n      frameWidth = frameMinWidth; // width of one frame in TimeLineTool\r\n      innerWidth = frameMinWidth * ome.sizeT + \"px\";\r\n    }\r\n\r\n    if (frameWidth > frameMaxWidth) {\r\n      frameWidth = frameMaxWidth;\r\n      innerWidth = frameWidth * ome.sizeT + \"px\";\r\n    }\r\n\r\n    const frameSeparatorColor = \"rgb(230, 230, 230)\";\r\n    const bgImage =\r\n      `repeating-linear-gradient(to right, ${frameSeparatorColor}, ` +\r\n      `${frameSeparatorColor} 2px, white 2px, ` +\r\n      `white ${frameWidth}px)`;\r\n    //console.log('structures', this.props.structures);\r\n    const charts = [];\r\n    if (structures && structures.length > 1) {\r\n      const frameIndices = Object.keys(frameArray)\r\n        .map((x) => +x)\r\n        .sort((x, y) => x - y);\r\n      for (\r\n        let structureIndex = 1;\r\n        structureIndex < structures.length;\r\n        structureIndex++\r\n      ) {\r\n        const structure = structures[structureIndex];\r\n        if (!structure.isUnfolded) {\r\n          continue;\r\n        }\r\n        const keyFrames = {};\r\n        let prevKeyFrame = -1;\r\n        const interpolatedIntervals = [];\r\n        if (frameArray) {\r\n          for (let frameIndex of frameIndices) {\r\n            if (frameArray[frameIndex]) {\r\n              const frameInfo = frameArray[frameIndex];\r\n              const roiLayer = frameInfo.find(\r\n                (roiLayer) => roiLayer.id === structure.id\r\n              );\r\n              if (\r\n                roiLayer &&\r\n                /* roiLayer.layer && roiLayer.layer.regionRois\r\n                && roiLayer.layer.regionRois.length > 0 && */ roiLayer.isKeyFrame\r\n              ) {\r\n                if (prevKeyFrame > -1 && frameIndex - prevKeyFrame !== 1) {\r\n                  const frameInfo = frameArray[prevKeyFrame + 1];\r\n                  if (frameInfo) {\r\n                    const roiLayer = frameInfo.find(\r\n                      (roiLayer) => roiLayer.id === structure.id\r\n                    );\r\n                    if (\r\n                      roiLayer &&\r\n                      roiLayer.layer &&\r\n                      roiLayer.layer.regionRois &&\r\n                      roiLayer.layer.regionRois.length > 0\r\n                    ) {\r\n                      interpolatedIntervals.push([prevKeyFrame, frameIndex]);\r\n                    }\r\n                  }\r\n                }\r\n                keyFrames[frameIndex] = true;\r\n                prevKeyFrame = frameIndex;\r\n              }\r\n            }\r\n          }\r\n        }\r\n        charts.push(\r\n          <TimeChart\r\n            key={structure.id}\r\n            structure={structure}\r\n            isSelected={structureIndex === this.props.selectedLayer}\r\n            keyFrames={keyFrames}\r\n            interpolatedIntervals={interpolatedIntervals}\r\n            frameWidth={frameWidth}\r\n          />\r\n        );\r\n      }\r\n    }\r\n\r\n    const addLength = charts.length * 50 + this.container.offsetHeight;\r\n\r\n    //Fragment is used to return multiple elements on the highest hierarchy level\r\n    return (\r\n      <div\r\n        onMouseDown={this.handleMouseDown}\r\n        onMouseMove={this.handleMouseMove}\r\n        style={{\r\n          border: \"1px\",\r\n          paddingTop: \"1px\",\r\n          backgroundImage: bgImage,\r\n          width: innerWidth,\r\n          height: addLength + \"px\",\r\n          position: \"relative\",\r\n        }}\r\n        ref={(el) => (this.innerContainer = el)}\r\n      >\r\n        {charts}\r\n\r\n        <div\r\n          style={{\r\n            width: \"2px\",\r\n            height: \"100%\",\r\n            left: time * frameWidth + \"px\",\r\n            top: \"0px\",\r\n            // position will be defined as absolute relative to the closest html elem with position attr \"relative\"\r\n            position: \"absolute\",\r\n            backgroundColor: \"black\",\r\n          }}\r\n        ></div>\r\n      </div>\r\n    );\r\n  }\r\n\r\n  render() {\r\n    const { dimensions } = this.state;\r\n    const {\r\n      classes,\r\n      time,\r\n      onStep,\r\n      ome,\r\n      onPlayPause,\r\n      playing,\r\n      playDirection,\r\n      onChangeSr,\r\n      sr,\r\n    } = this.props;\r\n\r\n    return (\r\n      <div\r\n        className={classes.root}\r\n        style={{ height: this.props.timeLineHeight }}\r\n      >\r\n        <div style={{ position: \"relative\" }}>\r\n          <div\r\n            className={classes.resizeTongue}\r\n            onMouseDown={this.handleResizeMouseDown}\r\n          >\r\n            <div className={classes.resizingLine}></div>\r\n          </div>\r\n        </div>\r\n        <div className={classes.modePanel}>\r\n          <input\r\n            type=\"button\"\r\n            value=\"interpolate\"\r\n            onClick={this.handleInterpolation}\r\n            className={classes.interpolate}\r\n          />\r\n          <Tooltip disableInteractive title={\"Frames per minute: \" + sr}>\r\n            <TextField\r\n              className={classes.framerate}\r\n              name=\"Textfield\"\r\n              label=\"FPM\"\r\n              value={sr}\r\n              min={1}\r\n              max={1500}\r\n              type=\"number\"\r\n              onChange={(e) =>\r\n                onChangeSr(\r\n                  Math.max(1, Math.min(1500, parseInt(e.target.value, 10)))\r\n                )\r\n              }\r\n            />\r\n          </Tooltip>\r\n        </div>\r\n        <div className={classes.stepWalker}>\r\n          <IconButton\r\n            className={classes.stepLeft}\r\n            onClick={() => onStep(-1)}\r\n            disabled={time <= 0}\r\n            size=\"large\"\r\n          >\r\n            <ArrowLeft color=\"primary\" />\r\n          </IconButton>\r\n          <div className={classes.timeCounter}>\r\n            {Math.floor(time) + 1}/{ome.sizeT}\r\n          </div>\r\n          <div className={classes.playButtons}>\r\n            <IconButton\r\n              className={classes.playPauseBackward}\r\n              onClick={() =>\r\n                playDirection < 0\r\n                  ? onPlayPause(!playing, -1)\r\n                  : onPlayPause(true, -1)\r\n              }\r\n              size=\"large\"\r\n            >\r\n              {playing && playDirection < 0 ? (\r\n                <PauseCircleOutline color=\"primary\" />\r\n              ) : (\r\n                <PlayCircleOutline color=\"primary\" />\r\n              )}\r\n            </IconButton>\r\n            <IconButton\r\n              className={classes.playPauseForward}\r\n              onClick={() =>\r\n                playDirection > 0\r\n                  ? onPlayPause(!playing, 1)\r\n                  : onPlayPause(true, 1)\r\n              }\r\n              size=\"large\"\r\n            >\r\n              {playing && playDirection > 0 ? (\r\n                <PauseCircleOutline color=\"primary\" />\r\n              ) : (\r\n                <PlayCircleOutline color=\"primary\" />\r\n              )}\r\n            </IconButton>\r\n          </div>\r\n          <IconButton\r\n            className={classes.stepRight}\r\n            onClick={() => onStep(1)}\r\n            disabled={time >= ome.sizeT - 1}\r\n            size=\"large\"\r\n          >\r\n            <ArrowRight color=\"primary\" />\r\n          </IconButton>\r\n        </div>\r\n        <div className={classes.container} ref={(el) => (this.container = el)}>\r\n          {dimensions && this.renderContent()}\r\n        </div>\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\n// define the component's interface\r\nTimeLineTool.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  ome: PropTypes.object,\r\n  playing: PropTypes.bool,\r\n  time: PropTypes.number,\r\n  onPlayPause: PropTypes.func,\r\n  onSeek: PropTypes.func,\r\n  playDirection: PropTypes.number,\r\n  onChangeSr: PropTypes.func,\r\n  onChangeT: PropTypes.func,\r\n  sr: PropTypes.number,\r\n  onStep: PropTypes.func,\r\n  structures: PropTypes.array,\r\n  frameArray: PropTypes.object,\r\n  selectedLayer: PropTypes.number,\r\n  resizeTimeLine: PropTypes.func,\r\n  timeLineHeight: PropTypes.number,\r\n};\r\n\r\n// withStyles is used to apply defined styles to TimeLineTool via passed classes\r\nexport default withStyles(styles)(TimeLineTool);\r\n","// Copyright HS Analysis GmbH, 2019\r\n// Author: Sebastian Murgul, Viktor Eberhardt\r\n\r\n// Framework imports\r\nimport React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\n// Mui imports\r\nimport CircularProgress from \"@mui/material/CircularProgress\";\r\nimport Fade from \"@mui/material/Fade\";\r\nimport IconButton from \"@mui/material/IconButton\";\r\nimport KeyboardArrowLeftIcon from \"@mui/icons-material/KeyboardArrowLeft\";\r\nimport KeyboardArrowRightIcon from \"@mui/icons-material/KeyboardArrowRight\";\r\nimport LinearProgress from \"@mui/material/LinearProgress\";\r\nimport Paper from \"@mui/material/Paper\";\r\nimport Popper from \"@mui/material/Popper\";\r\nimport Tooltip from \"@mui/material/Tooltip\";\r\nimport ViewQuilt from \"@mui/icons-material/ViewQuilt\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n\r\n// External imports\r\nimport h337 from \"heatmapjs\";\r\nimport { Resizable } from \"react-resizable\";\r\nimport \"react-resizable/css/styles.css\";\r\n\r\n// HSA Imports\r\nimport { trackTransforms, getBaseLog } from \"../utils/CanvasUtil\";\r\nimport {\r\n  configureImage,\r\n  colorInImage,\r\n  tileRegistration,\r\n  calculateTransformationMatrix,\r\n} from \"../utils/RendererUtils\";\r\nimport { debounce } from \"../../common/utils/Utils\";\r\nimport { getParentIndexLayer, getParentIndex } from \"../utils/StructuresUtils\";\r\nimport { RectROI, RegionROI } from \"../utils/ROI\";\r\nimport { Tools } from \"./VerticalToolBar\";\r\nimport { withPersistentStorage } from \"../contexts/PersistentStorageContext\";\r\nimport { withResultTab } from \"../contexts/ResultTabContext\";\r\nimport { withSpinloader } from \"../../common/components/Spinloader\";\r\nimport { withTiles } from \"../contexts/TilesContext\";\r\nimport Backend from \"../../common/utils/Backend\";\r\nimport ImageInfo from \"./ImageInfo\";\r\nimport MiniMap from \"./MiniMap\";\r\nimport RBush from \"rbush\";\r\nimport ResultTable from \"./ResultTable\";\r\nimport ScaleBar from \"./ScaleBar\";\r\nimport TimeLineTool from \"./TimeLineTool\";\r\nimport ToggleButton from \"./ToggleButton\";\r\nimport ZoomBar from \"./ZoomBar\";\r\nimport ZStackBar from \"./ZStackBar\";\r\n\r\n// debug flags\r\nconst FPS = false;\r\n\r\nconst styles = {\r\n  canvas: {\r\n    position: \"relative\",\r\n    display: \"block\",\r\n    width: \"100%\",\r\n    backgroundColor: \"#D3D3D3\",\r\n  },\r\n\r\n  root: {\r\n    height: \"100%\",\r\n  },\r\n\r\n  heatmapContainer: {\r\n    pointerEvents: \"none\",\r\n    position: \"absolute !important\",\r\n    zIndex: \"9998\",\r\n    width: \"100%\",\r\n    height: \"100%\",\r\n  },\r\n\r\n  toolbarButtonRoot: {\r\n    color: \"#666\",\r\n    position: \"absolute\",\r\n    top: 5,\r\n    right: 75,\r\n    zIndex: 100,\r\n  },\r\n  toolbarButtonRootSingle: {\r\n    color: \"#666\",\r\n    position: \"absolute\",\r\n    top: 5,\r\n    right: 5,\r\n    zIndex: 100,\r\n  },\r\n  toolbarButton: {\r\n    position: \"relative\",\r\n    display: \"inline-block\",\r\n\r\n    width: 40,\r\n    height: 40,\r\n    padding: 8,\r\n    margin: 0,\r\n  },\r\n  toolbarButtonIcon: {\r\n    verticalAlign: \"-4px\",\r\n  },\r\n  toolbarButtonChecked: {\r\n    width: 40,\r\n    color: \"#0673C1\",\r\n  },\r\n  progress: {\r\n    position: \"absolute\",\r\n    margin: -20,\r\n    left: \"50%\",\r\n    top: \"50%\",\r\n    zIndex: 1000,\r\n  },\r\n  fps: {\r\n    position: \"absolute\",\r\n    right: 50,\r\n    top: 50,\r\n    color: \"white\",\r\n    fontSize: 20,\r\n    pointerEvents: \"none\",\r\n  },\r\n  resizableContainer: {\r\n    \"& .react-resizable-handle\": {\r\n      pointerEvents: \"all\",\r\n    },\r\n    \"& .react-resizable-handle-se::before\": {\r\n      content: \"''\",\r\n      display: \"block\",\r\n      position: \"absolute\",\r\n      bottom: 3,\r\n      right: 3,\r\n      width: 6,\r\n      height: 6,\r\n      borderBottom: \"1px solid #0673c1\",\r\n      borderRight: \"1px solid #0673c1\",\r\n    },\r\n  },\r\n  fileNavLeftBtn: {\r\n    position: \"absolute\",\r\n    left: 5,\r\n    top: \"50%\",\r\n    marginTop: \"-40px\",\r\n    \"& svg\": {\r\n      fontSize: \"80px\",\r\n    },\r\n  },\r\n  fileNavRightBtn: {\r\n    position: \"absolute\",\r\n    right: 5,\r\n    top: \"50%\",\r\n    marginTop: \"-40px\",\r\n    \"& svg\": {\r\n      fontSize: \"80px\",\r\n    },\r\n  },\r\n};\r\n\r\nconst colors = [\r\n  \"#5470c6\",\r\n  \"#91cc75\",\r\n  \"#fac858\",\r\n  \"#ee6666\",\r\n  \"#73c0de\",\r\n  \"#3ba272\",\r\n  \"#fc8452\",\r\n  \"#9a60b4\",\r\n  \"#ea7ccc\",\r\n];\r\n\r\nNumber.prototype.toBase = function (base) {\r\n  var symbols =\r\n    \"0123456789abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ\".split(\"\");\r\n  var decimal = this;\r\n  var conversion = \"\";\r\n\r\n  if (base > symbols.length || base <= 1) {\r\n    return false;\r\n  }\r\n\r\n  while (decimal >= 1) {\r\n    conversion =\r\n      symbols[decimal - base * Math.floor(decimal / base)] + conversion;\r\n    decimal = Math.floor(decimal / base);\r\n  }\r\n\r\n  return base < 11 ? parseInt(conversion) : conversion;\r\n};\r\n\r\nclass Renderer extends Component {\r\n  _isMounted = false;\r\n\r\n  constructor(props) {\r\n    super(props);\r\n    // transmit context to componentRef\r\n    if (props.componentRef) props.componentRef(this);\r\n\r\n    this.state = {\r\n      previewWidth: 100,\r\n      previewHeight: 100,\r\n      dragStart: null,\r\n      ome: props.ome,\r\n      initialized: false,\r\n      initializedZ: false,\r\n      initialScale: 1,\r\n      tMin: 0,\r\n      tMax: 0,\r\n      t: 0,\r\n      z: Math.floor(props.ome.sizeZ / 2),\r\n      minZ: 0,\r\n      maxZ: props.ome.sizeZ - 1,\r\n      fps: 0,\r\n      // time playback\r\n      sr: 60,\r\n      // z playback\r\n      zsr: 60,\r\n      bufferSize: 100,\r\n      playing: false,\r\n      playingZ: false,\r\n      playDirection: 1,\r\n      playDirectionZ: 1,\r\n      miniMapKey: 0,\r\n      // tools\r\n      rois: [],\r\n      selectedROI: null,\r\n      limitVisibleRegions: false,\r\n      layerTrees: [],\r\n      previewRectChanged: false,\r\n      isBrightfield:\r\n        props.ome &&\r\n        props.ome.channels.length === 1 &&\r\n        props.ome.channels[0].type === \"brightfield\",\r\n      scaleBarData: null,\r\n      startY: 0,\r\n      showMiniMap: true,\r\n      showObjectIdx: false,\r\n      miniMapReady: false,\r\n      open: false,\r\n      anchorEl: null,\r\n      displayTimeBar: false,\r\n      displayZStackBar: false,\r\n      showScaleBar: true,\r\n      showTimeBar: false,\r\n      showZStackBar: false,\r\n      showImageInfo: true,\r\n      showZoomBar: true,\r\n      showResultTable: false,\r\n      showFileNavButtons: false,\r\n      hideMiniMap: false,\r\n    };\r\n    this.isDrawing = false;\r\n    this.updateCounter = 0;\r\n    this.visibleRegionsLimit = 3000;\r\n    this.visibleRegionsRadius = 1000;\r\n    this.structureRegionLimits = [];\r\n    this.slowestStructureIdx = -1;\r\n    this.fastestStructureIdx = -1;\r\n    this.fileIdStateData = {};\r\n\r\n    this.initFrameArray();\r\n    this.updateExistingStructures();\r\n\r\n    this.lineIdx = 0;\r\n    this.keepRendering = true;\r\n\r\n    this.lastMoveTime = performance.now();\r\n\r\n    this.selROI = null;\r\n    window.setNewSelRoi = this.setNewSelRoi;\r\n    window.getMousePositionInImage = this.getMousePositionInImage;\r\n    window.setZoomLevelForGridSize = this.setZoomLevelForGridSize;\r\n\r\n    // frontend cached alpha channel images\r\n    this.visibleImage = [];\r\n    // frontend cached colored images\r\n    this.coloredImages = [];\r\n\r\n    this.hMat = [];\r\n    this.imgRegistered = true;\r\n    this.callbackCounter = 0;\r\n\r\n    this.oldVisibleRegionCount = 0;\r\n\r\n    this.gridTileCount = 0;\r\n\r\n    // fps history to smooth fps counter update\r\n    this.lastFps = Array.from(Array(10), () => 60);\r\n\r\n    this.createBackgroundPattern();\r\n    this.tempLayer = null;\r\n  }\r\n\r\n  setMountedState = (stateObject, callback) => {\r\n    if (this._isMounted) {\r\n      this.setState(stateObject, callback);\r\n    }\r\n  };\r\n\r\n  createBackgroundPattern = () => {\r\n    this.backgroundPattern = document.createElement(\"canvas\");\r\n    const patternContext = this.backgroundPattern.getContext(\"2d\");\r\n\r\n    // Give the pattern a width and height of 50\r\n    const w = 30;\r\n    const h = 30;\r\n    this.backgroundPattern.width = w;\r\n    this.backgroundPattern.height = h;\r\n\r\n    // Give the pattern a background color and draw an arc\r\n    patternContext.fillStyle = \"transparent\";\r\n    patternContext.strokeStyle = \"#999\";\r\n    patternContext.fillRect(0, 0, w, h);\r\n    patternContext.lineWidth = 1;\r\n    patternContext.moveTo(-w / 2, h);\r\n    patternContext.lineTo(w, -h / 2);\r\n    patternContext.moveTo(0, h + h / 2);\r\n    patternContext.lineTo(w + w / 2, 0);\r\n    patternContext.stroke();\r\n  };\r\n\r\n  componentDidMount = () => {\r\n    this._isMounted = true;\r\n    let stateObject = {};\r\n    this.canvas = document.getElementById(this.props.canvasId);\r\n    this.props.resultTab.setRendererCanvas(this.canvas);\r\n    // get drawing context from canvas\r\n    this.ctx = this.canvas.getContext(\"2d\");\r\n    this.props.resultTab.setRendererCtx(this.ctx);\r\n\r\n    // bind mouse wheel events\r\n    this.canvas.addEventListener(\"DOMMouseScroll\", this.mousewheel, true);\r\n    this.canvas.addEventListener(\"mousewheel\", this.mousewheel, {\r\n      passive: false,\r\n    });\r\n    // bind mouse events\r\n    window.addEventListener(\"mouseup\", this.mouseup, { passive: true });\r\n    window.addEventListener(\"mousemove\", this.mousemove, { passive: true });\r\n\r\n    this.heatmap = h337.create({\r\n      container: document.getElementById(\"heatmapDiv\"),\r\n      gradient: {\r\n        \".25\": \"#0000ff\",\r\n        \".5\": \"#00ff00\",\r\n        \".75\": \"#ffff00\",\r\n        \".99\": \"#ff0000\",\r\n      },\r\n      maxOpacity: 0.8,\r\n      minOpacity: 0,\r\n      blur: 0.99,\r\n    });\r\n\r\n    // extend context with some fancy additional transformation methods\r\n    trackTransforms(this.ctx);\r\n\r\n    // converts the relative size css information into an absolute size which we can access\r\n    this.canvas.width = this.canvas.offsetWidth;\r\n    this.canvas.height = this.canvas.offsetHeight;\r\n\r\n    // initialize position\r\n    stateObject.lastX = this.canvas.width / 2;\r\n    stateObject.lastY = this.canvas.height / 2;\r\n\r\n    this.t0 = performance.now();\r\n\r\n    let loadObject = [\r\n      \"hideMiniMap\",\r\n      \"showObjectIdx\",\r\n      \"showMiniMap\",\r\n      \"showScaleBar\",\r\n      \"showTimeBar\",\r\n      \"showZStackBar\",\r\n      \"showImageInfo\",\r\n      \"showZoomBar\",\r\n      \"showResultTable\",\r\n      \"showFileNavButtons\",\r\n    ];\r\n\r\n    let i = null;\r\n    if (this.props.showFullscreen) {\r\n      loadObject.forEach((element) => {\r\n        i = this.props.persistentStorage.load(element + \"Full\");\r\n        if (i === true || i === false) stateObject[element] = i;\r\n      });\r\n    } else {\r\n      loadObject.forEach((element) => {\r\n        i = this.props.persistentStorage.load(element);\r\n        if (i === true || i === false) stateObject[element] = i;\r\n      });\r\n    }\r\n\r\n    stateObject[\"displayTimeBar\"] = this.props.displayTimeBar;\r\n    stateObject[\"displayZStackBar\"] = this.props.displayZStackBar;\r\n    stateObject[\"showZStackBar\"] = this.props.showZStackBar;\r\n    stateObject[\"showTimeBar\"] = this.props.showTimeBar;\r\n\r\n    this.setMountedState(stateObject, () => {\r\n      this.checkMiniMapVisivility();\r\n    });\r\n    //set mouse postition to center of canvas\r\n    this.mousePos = this.getMousePositionInImage();\r\n    this.draw();\r\n  };\r\n\r\n  loadFrameArray(frameIndex) {\r\n    this.applyFrameArray(frameIndex);\r\n  }\r\n\r\n  initFrameArray() {\r\n    const ome = this.state.ome;\r\n    const frameIndex = this.state.t * ome.sizeZ + this.state.z;\r\n    this.loadFrameArray(frameIndex);\r\n  }\r\n\r\n  // looks for annotations to visible frame excluding base roi\r\n  applyFrameArray(frameIndex) {\r\n    const roiLayers = this.props.roiLayers;\r\n    if (Object.keys(this.props.frameArrayDict[this.props.fileId]).length === 0)\r\n      return;\r\n\r\n    for (let idx = 1; idx < this.props.structures.length; idx++) {\r\n      const structure = this.props.structures[idx];\r\n      let newRoiLayer;\r\n      newRoiLayer = this.findRoiLayer(\r\n        this.props.frameArrayDict[this.props.fileId][frameIndex],\r\n        structure\r\n      );\r\n      roiLayers[idx] = newRoiLayer;\r\n    }\r\n  }\r\n\r\n  storeRoiLayersToFrameArray(frameIndex) {\r\n    let updatedFrameArrayFrame = [];\r\n    for (let structure of this.props.structures) {\r\n      if (structure.id === 1) {\r\n        continue;\r\n      }\r\n      updatedFrameArrayFrame.push(\r\n        this.findRoiLayer(this.props.roiLayers, structure)\r\n      );\r\n    }\r\n    this.props.frameArrayDict[this.props.fileId][frameIndex] =\r\n      updatedFrameArrayFrame;\r\n  }\r\n\r\n  findRoiLayer(roiLayers, structure) {\r\n    const roiLayer = roiLayers\r\n      ? roiLayers.find((x) => structure.id === x.id)\r\n      : roiLayers;\r\n    if (roiLayer === undefined) {\r\n      return this.getClearedRoiLayer(structure.id);\r\n    }\r\n    return roiLayer;\r\n  }\r\n\r\n  flipRoiLayers(prevState) {\r\n    const prevT = Math.floor(prevState.t);\r\n    const prevZ = Math.floor(prevState.z);\r\n    const curT = Math.floor(this.state.t);\r\n    const curZ = Math.floor(this.state.z);\r\n    const prevFrameIndex = prevT * this.state.ome.sizeZ + prevZ;\r\n    const frameIndex = curT * this.state.ome.sizeZ + curZ;\r\n\r\n    this.storeRoiLayersToFrameArray(prevFrameIndex);\r\n    this.applyFrameArray(frameIndex);\r\n    this.storeRoiLayersToFrameArray(frameIndex);\r\n  }\r\n\r\n  updateFrameArray() {\r\n    const curT = Math.floor(this.state.t);\r\n    const curZ = Math.floor(this.state.z);\r\n    const frameIndex = curT * this.state.ome.sizeZ + curZ;\r\n    this.storeRoiLayersToFrameArray(frameIndex);\r\n    const structure = this.props.structures[this.props.selectedLayer];\r\n    if (!structure) {\r\n      return;\r\n    }\r\n    const roiLayer = this.findRoiLayer(this.props.roiLayers, structure);\r\n    roiLayer.isKeyFrame = roiLayer.layer.regionRois.length > 0;\r\n  }\r\n\r\n  getClearedRoiLayer(id) {\r\n    return {\r\n      id: id,\r\n      layer: {\r\n        inverted: false,\r\n        regionRois: [],\r\n      },\r\n      tree: new RBush(),\r\n    };\r\n  }\r\n\r\n  /**\r\n   * Clear roiLayers except base roi\r\n   */\r\n  clearRoiLayers() {\r\n    for (let i = 1; i < this.props.roiLayers.length; i++) {\r\n      this.props.roiLayers[i] = this.getClearedRoiLayer(\r\n        this.props.roiLayers[i].id\r\n      );\r\n    }\r\n  }\r\n\r\n  removeLayersFromFrameArray(removedStructures) {\r\n    for (let structureId of removedStructures) {\r\n      for (let frameIndex in this.props.frameArrayDict[this.props.fileId]) {\r\n        const roiLayers =\r\n          this.props.frameArrayDict[this.props.fileId][frameIndex];\r\n        for (let i = roiLayers.length - 1; i >= 0; i--) {\r\n          if (roiLayers[i].id === structureId) {\r\n            roiLayers.splice(i, 1);\r\n          }\r\n        }\r\n      }\r\n    }\r\n  }\r\n\r\n  updateExistingStructures() {\r\n    this.existingStructures = {};\r\n    for (let structure of this.props.structures) {\r\n      this.existingStructures[structure.id] = true;\r\n    }\r\n  }\r\n\r\n  getRemovedStructures() {\r\n    const removedStructures = [];\r\n    for (let layerId in this.existingStructures) {\r\n      if (!this.props.structures.find((x) => x.id === layerId)) {\r\n        removedStructures.push(layerId);\r\n      }\r\n    }\r\n    return removedStructures;\r\n  }\r\n\r\n  componentDidUpdate(prevProps, prevState) {\r\n    const oldFileId = prevProps.fileId;\r\n    const newFileId = this.props.fileId;\r\n    const oldFrameIndex = prevState.t * prevState.ome.sizeZ + prevState.z;\r\n    //const newFrameIndex = this.state.t * this.state.ome.sizeZ + this.state.z;\r\n    const prevT = Math.floor(prevState.t);\r\n    const prevZ = Math.floor(prevState.z);\r\n    const curT = Math.floor(this.state.t);\r\n    const curZ = Math.floor(this.state.z);\r\n\r\n    const removedStructures = this.getRemovedStructures();\r\n    this.removeLayersFromFrameArray(removedStructures);\r\n    this.updateExistingStructures();\r\n\r\n    if (prevT !== curT || prevZ !== curZ) {\r\n      this.flipRoiLayers(prevState);\r\n    }\r\n\r\n    // on file change => reset renderer cache\r\n    if (oldFileId && oldFileId !== newFileId) {\r\n      // TODO: [BP-35] fix this part for histo modules (fix hot fix correctly)\r\n      let histoModule =\r\n        this.props.project.type.includes(\"HistoClassification\") ||\r\n        this.props.project.type.includes(\"HistoPointCounting\");\r\n      if (\r\n        !this.props.frameArrayDict[newFileId][oldFrameIndex] &&\r\n        !histoModule\r\n      ) {\r\n        this.clearRoiLayers();\r\n      } else {\r\n        this.applyFrameArray(oldFrameIndex);\r\n      }\r\n      this.fileIdStateData[oldFileId] = prevState;\r\n\r\n      if (this.fileIdStateData[newFileId]) {\r\n        this.setMountedState(this.fileIdStateData[newFileId]);\r\n      }\r\n\r\n      setTimeout(() => this.zoomFit(), 100);\r\n      this.setMountedState({\r\n        miniMapKey: new Date().getTime(),\r\n      });\r\n    }\r\n    if (\r\n      prevProps.loadedAnnotationsCounter !== this.props.loadedAnnotationsCounter\r\n    ) {\r\n      this.initFrameArray();\r\n    }\r\n\r\n    let idx = this.props.structures.findIndex((s) => s.label === \"Grid\");\r\n    if (this.props.roiLayers[idx]) {\r\n      if (idx > -1) {\r\n        this.gridTileCount = this.props.roiLayers[idx].layer.regionRois.length;\r\n      } else {\r\n        this.gridTileCount = 0;\r\n      }\r\n    }\r\n  }\r\n\r\n  componentWillUnmount = () => {\r\n    this._isMounted = false;\r\n    // unbind mouse wheel events\r\n    this.canvas.removeEventListener(\"DOMMouseScroll\", this.mousewheel);\r\n    this.canvas.removeEventListener(\"mousewheel\", this.mousewheel);\r\n    // unbind mouse events\r\n    window.removeEventListener(\"mouseup\", this.mouseup, { passive: true });\r\n    window.removeEventListener(\"mousemove\", this.mousemove, { passive: true });\r\n    this.keepRendering = false;\r\n  };\r\n\r\n  reset = () => {\r\n    // resets renderer to initial state\r\n    //TODO: adapt for Splitscreen, so that not all frames are reseted\r\n    this.props.tiles.clearTiles();\r\n    // frontend cached alpha channel images\r\n    this.props.tiles.setVisibleImage([]);\r\n    // frontend cached colored images\r\n    this.props.tiles.setColoredImages([]);\r\n\r\n    this.setMountedState({\r\n      dragStart: null,\r\n      playing: false,\r\n      //initialized: false,\r\n    });\r\n\r\n    this.loadAllTiles();\r\n    this.props.setChangingFile(false);\r\n    //this.props.setAIObjects();\r\n  };\r\n\r\n  updatePreviewRect = (activeTool) => {\r\n    if (this.props.tools[activeTool] && this.canvas) {\r\n      let p2 = this.getPointInCanvas({\r\n        x: this.canvas.offsetWidth / 2,\r\n        y: this.canvas.offsetHeight / 2,\r\n      });\r\n      this.props.tools[activeTool].setPreviewRect(p2.x, p2.y); //set position\r\n      if (typeof this.props.tools[activeTool].previewRect !== \"undefined\")\r\n        this.updatePreviewRectSize({\r\n          width: this.props.tools[activeTool].previewRect.w,\r\n          height: this.props.tools[activeTool].previewRect.h,\r\n        });\r\n    }\r\n  };\r\n\r\n  updateObjectMode = (value) => {\r\n    this.objectMode = value;\r\n  };\r\n\r\n  UNSAFE_componentWillReceiveProps = (nextProps) => {\r\n    const { structures, selectedLayer } = this.props;\r\n    // set canvas context for pen tool\r\n    if (\r\n      structures[selectedLayer] &&\r\n      structures[selectedLayer].isSubtype &&\r\n      structures[selectedLayer].classificationSubtype\r\n    ) {\r\n      let parentIndex = getParentIndexLayer(\r\n        structures[selectedLayer],\r\n        structures\r\n      );\r\n      if (\r\n        nextProps.tools[nextProps.activeTool] &&\r\n        this.props.isActive &&\r\n        nextProps.roiLayers[parentIndex]\r\n      ) {\r\n        nextProps.tools[nextProps.activeTool].setLayer({\r\n          layer: nextProps.roiLayers[parentIndex].layer,\r\n          ome: nextProps.ome,\r\n          fileId: nextProps.fileId,\r\n          projectId: nextProps.projectId,\r\n          structures: nextProps.structures,\r\n          roiLayers: nextProps.roiLayers,\r\n          drawLayer: nextProps.drawLayer,\r\n          selectedLayer: nextProps.selectedLayer,\r\n          updateProject: nextProps.updateProject,\r\n          commentLayer: nextProps.commentLayer,\r\n          landmarkLayer: nextProps.landmarkLayer,\r\n          landmarkLayers: nextProps.landmarkLayers,\r\n          allRoiLayers: nextProps.allRoiLayers,\r\n          viewerConfig_project: nextProps.viewerConfig.project,\r\n          project: nextProps.project,\r\n          ctx: this.ctx,\r\n          histogramConfig: nextProps.histogramConfig,\r\n          rendererDict: nextProps.rendererDict,\r\n          updateObjectMode: this.updateObjectMode,\r\n          splitscreenFileIds: nextProps.splitscreenFileIds,\r\n          groupPermissions: this.props.projectContext.groupPermissions,\r\n          spinloader: nextProps.spinloader,\r\n        });\r\n      }\r\n    } else {\r\n      let offset = 0;\r\n      if (\r\n        nextProps.structures[nextProps.selectedLayer - offset] &&\r\n        nextProps.tools[nextProps.activeTool] &&\r\n        nextProps.roiLayers &&\r\n        this.props.isActive\r\n      ) {\r\n        nextProps.tools[nextProps.activeTool].setLayer({\r\n          layer: nextProps.roiLayers.find(\r\n            (x) =>\r\n              x.id === nextProps.structures[nextProps.selectedLayer - offset].id\r\n          ).layer,\r\n          ome: nextProps.ome,\r\n          fileId: nextProps.fileId,\r\n          projectId: nextProps.projectId,\r\n          structures: nextProps.structures,\r\n          roiLayers: nextProps.roiLayers,\r\n          drawLayer: nextProps.drawLayer,\r\n          selectedLayer: nextProps.selectedLayer,\r\n          updateProject: nextProps.updateProject,\r\n          commentLayer: nextProps.commentLayer,\r\n          landmarkLayer: nextProps.landmarkLayer,\r\n          landmarkLayers: nextProps.landmarkLayers,\r\n          allRoiLayers: nextProps.allRoiLayers,\r\n          viewerConfig_project: nextProps.viewerConfig.project,\r\n          project: nextProps.project,\r\n          ctx: this.ctx,\r\n          histogramConfig: nextProps.histogramConfig,\r\n          rendererDict: nextProps.rendererDict,\r\n          updateObjectMode: this.updateObjectMode,\r\n          splitscreenFileIds: nextProps.splitscreenFileIds,\r\n          groupPermissions: this.props.projectContext.groupPermissions,\r\n          spinloader: nextProps.spinloader,\r\n        });\r\n      }\r\n    }\r\n\r\n    // update preview rect\r\n    if (!nextProps.showGallery) {\r\n      if (!this.state.previewRectChanged)\r\n        this.setMountedState({ previewRectChanged: true });\r\n    }\r\n  };\r\n\r\n  getPage = (c, z, t) => {\r\n    // calculate page index from coordinates\r\n    return (\r\n      Math.round(t) * this.props.ome.channels.length * this.props.ome.sizeZ +\r\n      c * this.props.ome.sizeZ +\r\n      Math.round(z)\r\n    );\r\n  };\r\n\r\n  getPageForChannel = (c) => {\r\n    // calculate page index from coordinates\r\n    return (\r\n      Math.round(this.state.t) *\r\n        this.props.ome.channels.length *\r\n        this.props.ome.sizeZ +\r\n      Math.round(this.state.z) * this.props.ome.channels.length +\r\n      c\r\n    );\r\n  };\r\n\r\n  getMousePositionInImage = () => {\r\n    let x = window.getMousePosition()[0];\r\n    let y = window.getMousePosition()[1];\r\n    this.lastX = x - this.canvas.getBoundingClientRect().left;\r\n    this.lastY = y - this.canvas.getBoundingClientRect().top; //- this.canvas.offsetTop\r\n\r\n    // calculate mouse position in image coordinates\r\n    let p1 = this.getPointInCanvas({\r\n      x: this.lastX,\r\n      y: this.lastY,\r\n    });\r\n    let p2 = this.getPointInCanvas({ x: 0, y: 0 });\r\n    let p3 = this.getPosition();\r\n\r\n    p1.x += p2.x - p3.x / this.getScale();\r\n    p1.y += p2.y - p3.y / this.getScale();\r\n\r\n    return p1;\r\n  };\r\n\r\n  getPositionInImage = (position) => {\r\n    // calculate corner points top left (position==0), bottom right (position==1), center (position==2)\r\n    let X;\r\n    let Y;\r\n    if (position === 0) {\r\n      // top left\r\n      X = this.canvas.getBoundingClientRect().left;\r\n      Y = this.canvas.getBoundingClientRect().top; //64 - this.canvas.offsetTop + 32; // 32 is half of blue header\r\n    } else if (position === 1) {\r\n      // bottom right\r\n      X = this.canvas.getBoundingClientRect().right;\r\n      Y = this.canvas.getBoundingClientRect().bottom;\r\n      //- this.canvas.offsetTop + 32; // 32 is half of blue header\r\n    } else {\r\n      // center\r\n      X =\r\n        (this.canvas.getBoundingClientRect().left +\r\n          this.canvas.getBoundingClientRect().right) /\r\n        2;\r\n      Y =\r\n        (this.canvas.getBoundingClientRect().top +\r\n          this.canvas.getBoundingClientRect().bottom) /\r\n        2;\r\n      //+32; // 32 is half of blue header\r\n    }\r\n\r\n    // calculate mouse position in image coordinates\r\n    let p1 = this.getPointInCanvas({\r\n      x: X - this.canvas.getBoundingClientRect().left,\r\n      y: Y - this.canvas.getBoundingClientRect().top,\r\n    });\r\n    let p2 = this.getPointInCanvas({ x: 0, y: 0 });\r\n    let p3 = this.getPosition();\r\n    p1.x += p2.x - p3.x / this.getScale();\r\n    p1.y += p2.y - p3.y / this.getScale();\r\n\r\n    return p1;\r\n  };\r\n\r\n  toolMouseForward = (event) => {\r\n    const parentId = this.props.structures[this.props.selectedLayer].parentId;\r\n\r\n    let parentIdx = this.props.structures.findIndex(\r\n      (item) => item.id === parentId\r\n    );\r\n    parentIdx = this.props.selectedLayer > 0 ? Math.max(0, parentIdx) : -1;\r\n    let p1 = this.mousePos;\r\n    p1.x = p1.x < 0 ? 0 : p1.x;\r\n    p1.x = p1.x > this.vw ? this.vw : p1.x;\r\n    p1.y = p1.y < 0 ? 0 : p1.y;\r\n    p1.y = p1.y > this.vh ? this.vh : p1.y;\r\n    const isSubtype =\r\n      this.props.structures[this.props.selectedLayer].isSubtype &&\r\n      this.props.structures[this.props.selectedLayer].classificationSubtype;\r\n\r\n    let selection = this.props.tools[this.props.activeTool].mouse({\r\n      event: event,\r\n      p: p1,\r\n      color: this.props.structures[this.props.selectedLayer].color,\r\n      subtype: isSubtype,\r\n      name: isSubtype\r\n        ? this.props.structures[this.props.selectedLayer].label\r\n        : \"\",\r\n      positionInRoiLayer: false,\r\n      fullyLoaded: false,\r\n      parentIdx: parentIdx,\r\n      selectedId: this.props.structures[this.props.selectedLayer].id,\r\n      vw: this.vw,\r\n      vh: this.vh,\r\n      scale: this.getScale(),\r\n      renderer: this,\r\n    });\r\n    return selection;\r\n  };\r\n\r\n  getPointInCanvasCoord = (x, y) => {\r\n    let pt = {\r\n      x: Math.round(x * this.ctx.getTransform().a + this.ctx.getTransform().e),\r\n      y: Math.round(y * this.ctx.getTransform().d + this.ctx.getTransform().f),\r\n    };\r\n    return pt;\r\n  };\r\n\r\n  getPointInCanvas = (p) => {\r\n    try {\r\n      let tp = this.ctx.transformedPoint(p.x, p.y);\r\n      return {\r\n        x: tp.x,\r\n        y: tp.y,\r\n      };\r\n    } catch (ex) {\r\n      // Skip this frame\r\n      // console.error(ex);\r\n      return {\r\n        x: -1,\r\n        y: -1,\r\n      };\r\n    }\r\n  };\r\n\r\n  mousedown = (event) => {\r\n    let p1 = this.getMousePositionInImage();\r\n    this.mousePos = p1;\r\n    this.props.tiles.chainLeaderId = this.props.canvasId;\r\n\r\n    if (this.props.tools[this.props.activeTool] && !event.ctrlKey) {\r\n      // only drawing on image is allowed\r\n      if (p1.x >= 0 && p1.x <= this.vw && p1.y >= 0 && p1.y <= this.vh) {\r\n        let selection = this.toolMouseForward(event);\r\n        // if tool is selection then save selected roi\r\n        if (\r\n          this.props.tools[this.props.activeTool].name === \"Selection\" &&\r\n          selection\r\n        ) {\r\n          this.selROI = selection;\r\n          this.props.setSelectedRoi(selection);\r\n          if (selection.classify) {\r\n            this.classifySelectedRoi(selection, true);\r\n          }\r\n        }\r\n      }\r\n    } else if (event.button === 0 && !event.ctrlKey) {\r\n      if (this.props.activeTool === Tools.RECT_ROI) {\r\n        // only drawing on image is allowed\r\n        if (p1.x >= 0 && p1.x <= this.vw && p1.y >= 0 && p1.y <= this.vh) {\r\n          // create new rectangle in drawing mode\r\n          let newROI = new RectROI(this.ctx, p1.x, p1.y, 0, 0, true);\r\n          // select new rectangle for resizing\r\n          this.resizeROI = newROI;\r\n\r\n          // update component state\r\n          this.props.onChangeROIs([...this.props.rois, newROI]);\r\n        }\r\n      } else {\r\n        // corner radius of our rectangles\r\n        for (let roi of this.props.rois) {\r\n          switch (roi.handleMouseDown(p1)) {\r\n            case 1: // dragging\r\n              this.dragROI = roi;\r\n              break;\r\n            case 2: // resizing\r\n              this.resizeROI = roi;\r\n              this.dragROI = null;\r\n              return;\r\n            default:\r\n              // no collision\r\n              break;\r\n          }\r\n        }\r\n      }\r\n    }\r\n\r\n    // start dragging if middle mouse button is down or not tool selected\r\n    if (\r\n      event.button === 1 ||\r\n      (event.button === 0 && event.ctrlKey) ||\r\n      (!this.dragROI &&\r\n        !this.resizeROI &&\r\n        ![\r\n          Tools.MAGICWAND_ROI,\r\n          Tools.REGIONGROWING_ROI,\r\n          Tools.REGIONGRABCUT_ROI,\r\n          Tools.PEN_ROI,\r\n          Tools.RectROI,\r\n          Tools.REGION_ROI,\r\n          Tools.RECTANGLE_ROI,\r\n          Tools.COMMENT_ROI,\r\n          Tools.ELLIPSE_ROI,\r\n          Tools.COPY_ROI,\r\n          Tools.FILL,\r\n          Tools.SELECTION_ROI,\r\n          Tools.GRIDANNOTATIONTOOL,\r\n          Tools.LANDMARK,\r\n          Tools.STREAMVIEW,\r\n        ].includes(\r\n          //deactivate dragging for this tools\r\n          this.props.activeTool\r\n        ))\r\n    ) {\r\n      let dragStart = this.getPointInCanvas({ x: this.lastX, y: this.lastY });\r\n      this.setMountedState({\r\n        dragStart: dragStart,\r\n      });\r\n      if (this.props.isChained) {\r\n        if (this.props.showFullscreen) {\r\n          for (const value of Object.values(this.props.splitscreenFileIds)) {\r\n            let fDragStart = this.props.rendererDict[\r\n              \"Full\" + value\r\n            ].getPointInCanvas({\r\n              x: this.lastX,\r\n              y: this.lastY,\r\n            });\r\n            this.props.rendererDict[\"Full\" + value].setState({\r\n              dragStart: fDragStart,\r\n            });\r\n          }\r\n        } else {\r\n          for (const value of Object.values(this.props.chainListFileIds)) {\r\n            let fDragStart = this.props.rendererDict[value].getPointInCanvas({\r\n              x: this.lastX,\r\n              y: this.lastY,\r\n            });\r\n            this.props.rendererDict[value].setState({\r\n              dragStart: fDragStart,\r\n            });\r\n          }\r\n        }\r\n      }\r\n\r\n      this.canvas.style.cursor = \"move\";\r\n\r\n      if ((event.button === 0 || event.button === 1) && event.altKey) {\r\n        this.tempChainToggle = true;\r\n\r\n        if (this.props.showFullscreen) {\r\n          this.props.fsChain();\r\n        } else {\r\n          this.props.onChangeChain(\r\n            false,\r\n            this.props.splitscreenIdx,\r\n            this.props.fileId\r\n          );\r\n        }\r\n      }\r\n\r\n      // dont forward any event upwards\r\n      event.preventDefault();\r\n      return false;\r\n    } else {\r\n      this.isDrawing = true;\r\n    }\r\n  };\r\n\r\n  setHeatmapData = (data, maxValue, show = true) => {\r\n    this.showHeatmap = show;\r\n    let heatmapData = {\r\n      max: maxValue,\r\n      data: data,\r\n    };\r\n    this.heatmap.setData(heatmapData);\r\n  };\r\n\r\n  mouseBusy = () => {\r\n    return !this.canvas.style.cursor !== \"default\";\r\n  };\r\n\r\n  mousemove = (event) => {\r\n    if (this.props.resultTab.getZoomLevelFixed()) {\r\n      return;\r\n    }\r\n    let p1 = this.getMousePositionInImage();\r\n    if (\r\n      this.isDrawing ||\r\n      this.mouseOnCanvas ||\r\n      (this.props.tools[this.props.activeTool] &&\r\n        this.props.tools[this.props.activeTool].preventMiddleMousePos)\r\n    ) {\r\n      this.mousePos = p1;\r\n    } else {\r\n      this.middleMousePos();\r\n    }\r\n    if (this.dragROI) {\r\n      // handle roi dragging\r\n      this.dragROI.drag(p1, this.vw, this.vh);\r\n    } else if (this.resizeROI) {\r\n      // resize the roi if inside the image\r\n      this.resizeROI.resize(p1, this.vw, this.vh);\r\n    } else if (\r\n      this.state.dragStart &&\r\n      this.props.tiles.chainLeaderId === this.props.canvasId\r\n    ) {\r\n      // handle canvas dragging\r\n      let pt = this.getPointInCanvas({ x: this.lastX, y: this.lastY });\r\n      // translate canvas\r\n\r\n      this.ctx.translate(\r\n        pt.x - this.state.dragStart.x,\r\n        pt.y - this.state.dragStart.y\r\n      );\r\n      if (this.props.isChained) {\r\n        if (this.props.showFullscreen) {\r\n          for (const value of Object.values(this.props.splitscreenFileIds)) {\r\n            let fPt = this.props.rendererDict[\"Full\" + value].getPointInCanvas({\r\n              x: this.lastX,\r\n              y: this.lastY,\r\n            });\r\n            this.props.rendererDict[\"Full\" + value].chainMouseDrag(\r\n              fPt.x,\r\n              fPt.y\r\n            );\r\n          }\r\n        } else {\r\n          for (const value of Object.values(this.props.chainListFileIds)) {\r\n            let fPt = this.props.rendererDict[value].getPointInCanvas({\r\n              x: this.lastX,\r\n              y: this.lastY,\r\n            });\r\n            this.props.rendererDict[value].chainMouseDrag(fPt.x, fPt.y);\r\n          }\r\n        }\r\n      }\r\n      this.zoomMoveActionDebounced();\r\n    } else if (\r\n      this.props.tools[this.props.activeTool] &&\r\n      this.props.activeTool !== Tools.LANDMARK\r\n    ) {\r\n      // only drawing on image is allowed\r\n      this.toolMouseForward(event);\r\n    } else if (this.props.activeTool === Tools.LANDMARK) {\r\n      // handle roi drawing mode\r\n      if (p1.x >= 0 && p1.x <= this.vw && p1.y >= 0 && p1.y <= this.vh) {\r\n        // only show crosshair if cursor on the image\r\n        this.canvas.style.cursor = \"crosshair\";\r\n      } else {\r\n        this.canvas.style.cursor = \"default\";\r\n      }\r\n      this.toolMouseForward(event);\r\n    } else if (this.props.activeTool === Tools.RECT_ROI) {\r\n      // handle roi drawing mode\r\n      if (p1.x >= 0 && p1.x <= this.vw && p1.y >= 0 && p1.y <= this.vh) {\r\n        // only show crosshair if cursor on the image\r\n        this.canvas.style.cursor = \"crosshair\";\r\n      } else {\r\n        this.canvas.style.cursor = \"default\";\r\n      }\r\n    } else {\r\n      // handle hover events etc.\r\n      this.canvas.style.cursor = \"default\";\r\n      for (let roi of this.props.rois) {\r\n        roi.handleMouseMove(p1);\r\n      }\r\n    }\r\n    this.lastMoveTime = performance.now();\r\n\r\n    // redraw screen\r\n    //this.forceUpdate();\r\n  };\r\n\r\n  chainMouseDrag = (x, y) => {\r\n    if (this.props.tiles.chainLeaderId !== this.props.canvasId) {\r\n      if (this.props.isChained) {\r\n        this.ctx.translate(\r\n          x - this.state.dragStart.x,\r\n          y - this.state.dragStart.y\r\n        );\r\n      }\r\n    }\r\n  };\r\n\r\n  onCanvasMouseMove = () => {\r\n    this.mouseOnCanvas = true;\r\n  };\r\n\r\n  onCanvasMouseLeave = () => {\r\n    this.mouseOnCanvas = false;\r\n  };\r\n\r\n  middleMousePos = () => {\r\n    let p1 = this.getPointInCanvas({ x: 0, y: 0 });\r\n    let p2 = this.getPointInCanvas({\r\n      x: this.canvas.width,\r\n      y: this.canvas.height,\r\n    });\r\n    let centerX = p1.x + (p2.x - p1.x) / 2;\r\n    let centerY = p1.y + (p2.y - p1.y) / 2;\r\n    this.mousePos = { x: centerX, y: centerY };\r\n  };\r\n\r\n  mouseup = (event) => {\r\n    let p1 = this.getMousePositionInImage();\r\n    this.mousePos = p1;\r\n\r\n    if (\r\n      this.props.tools[this.props.activeTool] &&\r\n      (this.isDrawing || this.props.activeTool === \"gridannotationtool\")\r\n    ) {\r\n      this.toolMouseForward(event);\r\n      this.updateFrameArray();\r\n    }\r\n\r\n    // stop dragging the canvas\r\n    if (this.state.dragStart) {\r\n      this.setMountedState({ dragStart: null });\r\n      this.canvas.style.cursor = \"default\";\r\n    }\r\n\r\n    // stop resizing a roi\r\n    if (this.resizeROI) {\r\n      this.resizeROI.handleMouseUp();\r\n      this.resizeROI = null;\r\n    }\r\n\r\n    // stop dragging a roi\r\n    if (this.dragROI) {\r\n      this.dragROI.handleMouseUp();\r\n      this.dragROI = null;\r\n    }\r\n\r\n    this.isDrawing = false;\r\n\r\n    if (this.tempChainToggle) {\r\n      this.tempChainToggle = false;\r\n      if (this.props.showFullscreen) {\r\n        this.props.fsChain();\r\n      } else {\r\n        this.props.onChangeChain(\r\n          true,\r\n          this.props.splitscreenIdx,\r\n          this.props.fileId\r\n        );\r\n      }\r\n    }\r\n\r\n    if (this.state.showResultTable) {\r\n      window.updateResultTable();\r\n    }\r\n\r\n    // update view\r\n    this.forceUpdate();\r\n  };\r\n\r\n  onScaleOnly = (event) => {\r\n    let delta = 0;\r\n\r\n    if (event.wheelDelta) {\r\n      /* IE/Opera. */\r\n      delta = -(event.wheelDelta / 120);\r\n    } else if (event.detail) {\r\n      /* Mozilla */\r\n      delta = event.detail / 3;\r\n    }\r\n\r\n    if (delta) {\r\n      // zoom in (1) or out (-1)\r\n      this.zoomDirection = delta < 0 ? 1 : -1;\r\n\r\n      // set destination scale value\r\n      let newZoom = this.getScale() * Math.pow(2, this.zoomDirection);\r\n\r\n      // max zoom out value\r\n      this.zoomValueOut = (0.75 * this.canvas.height) / this.vh;\r\n\r\n      if ((0.75 * this.canvas.width) / this.vw < this.zoomValueOut) {\r\n        this.zoomValueOut = (0.75 * this.canvas.width) / this.vw;\r\n      }\r\n\r\n      if (this.props.isActive === false && this.props.isChained) {\r\n        this.zoomValueOut = this.props.showFullscreen\r\n          ? this.props.rendererDict[\"Full\" + this.props.activeFileId]\r\n              .zoomValueOut\r\n          : this.props.rendererDict[this.props.activeFileId].zoomValueOut;\r\n      }\r\n\r\n      if (newZoom < this.zoomValueOut) {\r\n        newZoom = this.zoomValueOut;\r\n      }\r\n\r\n      // Limit maximum zoom in value\r\n      const maxZoomIn = 32;\r\n      newZoom = newZoom > maxZoomIn ? maxZoomIn : newZoom;\r\n\r\n      this.zoomTo = newZoom;\r\n      // redraw ui\r\n      this.forceUpdate();\r\n    }\r\n\r\n    // prevent other scroll actions\r\n    if (event.preventDefault) {\r\n      event.preventDefault();\r\n    }\r\n    event.returnValue = false;\r\n  };\r\n\r\n  mousewheel = (event) => {\r\n    // save zoom destination point\r\n    this.props.tiles.chainLeaderId = this.props.canvasId;\r\n    if (\r\n      this.state.initialized &&\r\n      !event.ctrlKey &&\r\n      !this.props.resultTab.getZoomLevelFixed()\r\n    ) {\r\n      this.zoomPoint = {\r\n        x: this.lastX,\r\n        y: this.lastY, // - this.canvas.getBoundingClientRect().top,\r\n      };\r\n      this.onScaleOnly(event);\r\n    }\r\n\r\n    if (this.props.isChained) {\r\n      if (this.props.showFullscreen) {\r\n        for (const value of Object.values(this.props.splitscreenFileIds)) {\r\n          this.props.rendererDict[\"Full\" + value].chainMousewheel(\r\n            event,\r\n            this.zoomPoint\r\n          );\r\n        }\r\n      } else {\r\n        for (const value of Object.values(this.props.chainListFileIds)) {\r\n          this.props.rendererDict[value].chainMousewheel(event, this.zoomPoint);\r\n        }\r\n      }\r\n    }\r\n    event.preventDefault();\r\n  };\r\n\r\n  chainMousewheel = (event, leaderZoomPoint) => {\r\n    // save zoom destination point\r\n    if (this.props.tiles.chainLeaderId !== this.props.canvasId) {\r\n      if (this.props.isChained) {\r\n        if (\r\n          this.state.initialized &&\r\n          !event.ctrlKey &&\r\n          !event.shiftKey &&\r\n          !this.props.resultTab.getZoomLevelFixed()\r\n        ) {\r\n          this.zoomPoint = leaderZoomPoint;\r\n          this.onScaleOnly(event);\r\n        }\r\n      }\r\n      event.preventDefault();\r\n    } else return;\r\n  };\r\n\r\n  miniMapZoom = (event, x, y) => {\r\n    this.props.tiles.chainLeaderId = this.props.canvasId;\r\n    if (\r\n      this.state.initialized &&\r\n      !event.ctrlKey &&\r\n      !this.props.resultTab.getZoomLevelFixed()\r\n    ) {\r\n      let ctx = this.miniMapRef.getCtx();\r\n      let tpt = ctx.transformedPoint(x, y);\r\n      let pt = {\r\n        x: tpt.x * this.ctx.getTransform().a + this.ctx.getTransform().e,\r\n        y: tpt.y * this.ctx.getTransform().d + this.ctx.getTransform().f,\r\n      };\r\n      pt.x = Math.round(pt.x);\r\n      pt.y = Math.round(pt.y);\r\n      if (\r\n        pt.x < this.canvas.width &&\r\n        pt.x > 0 &&\r\n        pt.y < this.canvas.height &&\r\n        pt.y > 0\r\n      ) {\r\n        this.zoomPoint = pt;\r\n      } else {\r\n        return;\r\n      }\r\n      this.onScaleOnly(event);\r\n    }\r\n    if (this.props.isChained) {\r\n      let l = this.props.showFullscreen\r\n        ? this.props.splitscreenFileIds\r\n        : this.props.chainListFileIds;\r\n      for (const value of Object.values(l)) {\r\n        if (value !== this.props.fileId) {\r\n          let r = this.props.showFullscreen\r\n            ? this.props.rendererDict[\"Full\" + value]\r\n            : this.props.rendererDict[value];\r\n          let c = r.miniMapRef.getCtx();\r\n          let p = c.transformedPoint(x, y);\r\n          let pt = {\r\n            x: p.x * r.ctx.getTransform().a + r.ctx.getTransform().e,\r\n            y: p.y * r.ctx.getTransform().d + r.ctx.getTransform().f,\r\n          };\r\n          pt.x = Math.round(pt.x);\r\n          pt.y = Math.round(pt.y);\r\n          if (\r\n            pt.x < r.canvas.width &&\r\n            pt.x > 0 &&\r\n            pt.y < r.canvas.height &&\r\n            pt.y > 0\r\n          ) {\r\n            r.zoomPoint = pt;\r\n          } else {\r\n            return;\r\n          }\r\n          r.chainMousewheel(event, pt);\r\n        }\r\n      }\r\n    }\r\n    event.preventDefault();\r\n  };\r\n\r\n  // returns the current zoom scale\r\n  getScale = () => {\r\n    return this.ctx ? this.ctx.getTransform().a : 1;\r\n  };\r\n\r\n  // returns position of our image\r\n  getPosition = () => {\r\n    return {\r\n      x: -this.ctx.getTransform().e,\r\n      y: -this.ctx.getTransform().f,\r\n    };\r\n  };\r\n\r\n  // zoom out to show the whole image\r\n  zoomOut = () => {\r\n    // center image first\r\n    let pt = this.getPointInCanvas({\r\n      x: (this.canvas.width - this.vw) / 2,\r\n      y: (this.canvas.height - this.vh) / 2,\r\n    });\r\n    this.ctx.translate(pt.x, pt.y);\r\n    // calc our transformation offset\r\n    pt = this.getPointInCanvas({\r\n      x: this.canvas.width / 2,\r\n      y: this.canvas.height / 2,\r\n    });\r\n    // move to origin\r\n    this.ctx.translate(pt.x, pt.y);\r\n    // calc scale factor so we can fit the whole image on our screen\r\n    let factor = Math.min(\r\n      this.canvas.height / this.vh,\r\n      this.canvas.width / this.vw\r\n    );\r\n    // perform scaling\r\n    this.ctx.scale(factor, factor);\r\n    // restore our offset\r\n    this.ctx.translate(-pt.x, -pt.y);\r\n    // save initial scale into our state\r\n    this.setMountedState({\r\n      initialized: true,\r\n      initialScale: factor,\r\n    });\r\n    this.props.resultTab.setRendererInitialized(true);\r\n  };\r\n\r\n  moveTo = (e) => {\r\n    // get curent position (center of screen) and transform into world coordinates\r\n    let pt = this.getPointInCanvas({\r\n      x: this.canvas.width / 2,\r\n      y: this.canvas.height / 2,\r\n    });\r\n    // translate by the offset to the destination point\r\n    this.ctx.translate(-(e.x - pt.x), -(e.y - pt.y));\r\n    // redraw screen\r\n    this.forceUpdate();\r\n    this.zoomMoveAction();\r\n  };\r\n\r\n  chainMoveTo = (x, y) => {\r\n    // get curent position (center of screen) and transform into world coordinates\r\n    let pt = this.getPointInCanvas({\r\n      x: this.canvas.width / 2,\r\n      y: this.canvas.height / 2,\r\n    });\r\n    // translate by the offset to the destination point\r\n    this.ctx.translate(-(x - pt.x), -(y - pt.y));\r\n    // redraw screen\r\n    this.forceUpdate();\r\n    this.zoomMoveAction();\r\n  };\r\n\r\n  chainMouseMove = (x, y, e) => {\r\n    if (this.props.isChained) {\r\n      if (this.props.showFullscreen) {\r\n        for (const value of Object.values(this.props.splitscreenFileIds)) {\r\n          if (value !== this.props.fileId) {\r\n            let ctx =\r\n              this.props.rendererDict[\"Full\" + value].miniMapRef.getCtx();\r\n            let pt = ctx.transformedPoint(x, y);\r\n            this.props.rendererDict[\"Full\" + value].chainMoveTo(pt.x, pt.y, e);\r\n          }\r\n        }\r\n      } else {\r\n        for (const value of Object.values(this.props.chainListFileIds)) {\r\n          if (value !== this.props.fileId) {\r\n            let ctx = this.props.rendererDict[value].miniMapRef.getCtx();\r\n            let pt = ctx.transformedPoint(x, y);\r\n            this.props.rendererDict[value].chainMoveTo(pt.x, pt.y, e);\r\n          }\r\n        }\r\n      }\r\n    }\r\n  };\r\n\r\n  hoverROI = (roi, hovered) => {\r\n    // update hovered parameter of roi\r\n    roi.hovered = hovered;\r\n    // redraw screen\r\n    this.forceUpdate();\r\n  };\r\n\r\n  centerROI = (roi) => {\r\n    // center roi\r\n    this.moveTo({ x: roi.x - roi.w / 2, y: roi.y - roi.h / 2 });\r\n  };\r\n\r\n  transformPoint = (x, y, m, tfact) => {\r\n    m[2] *= tfact;\r\n    m[5] *= tfact;\r\n    let a = m[0] * x + m[1] * y + m[2];\r\n    let b = m[3] * x + m[4] * y + m[5];\r\n    return [a, b];\r\n  };\r\n\r\n  transformLandmark = (h, tfact) => {\r\n    for (let roi of this.props.landmarkLayer.landmarkRois) {\r\n      let p = roi.regions;\r\n      roi.regions = this.transformPoint(p[0], p[1], h, tfact);\r\n    }\r\n  };\r\n\r\n  transformLandmarkNoOffset = (h, tfact) => {\r\n    let m = [];\r\n    for (let roi of this.props.landmarkLayer.landmarkRois) {\r\n      let p = roi.regions;\r\n      m.push(this.transformPoint(p[0], p[1], h, tfact));\r\n    }\r\n    return m;\r\n  };\r\n\r\n  transformAnnotation = (h, tfact) => {\r\n    for (let struct of this.props.roiLayers) {\r\n      let newRegionList = [];\r\n      if (struct.layer.regionRois.length > 0) {\r\n        for (let roi of struct.layer.regionRois) {\r\n          let newRegion = [];\r\n          for (let region of roi.regions[0]) {\r\n            let point = this.transformPoint(region[0], region[1], h, tfact);\r\n            newRegion.push(point);\r\n          }\r\n          let temp = roi;\r\n          temp.regions = newRegion;\r\n          let newRoi = new RegionROI(temp);\r\n          newRegionList.push(newRoi);\r\n        }\r\n        struct.tree.clear();\r\n        struct.layer.regionRois = newRegionList;\r\n        struct.tree.load(newRegionList.map((item) => item.treeItem));\r\n      }\r\n    }\r\n  };\r\n\r\n  generateTransformationOffset = (marks) => {\r\n    let origCenter = { x: this.vw / 2, y: this.vh / 2 };\r\n\r\n    let xValues = [];\r\n    let yValues = [];\r\n    for (let i = 0; i < marks.length; i++) {\r\n      xValues.push(marks[i][0]);\r\n      yValues.push(marks[i][1]);\r\n    }\r\n    let xMin = Math.min(...xValues);\r\n    let xMax = Math.max(...xValues);\r\n    let yMin = Math.min(...yValues);\r\n    let yMax = Math.max(...yValues);\r\n\r\n    let bbCenter = { x: xMin + (xMax - xMin) / 2, y: yMin + (yMax - yMin) / 2 };\r\n    let offset = { x: origCenter.x - bbCenter.x, y: origCenter.y - bbCenter.y };\r\n    return offset;\r\n    // return { x: 0, y: 0 };\r\n  };\r\n\r\n  generateLandmarkTransformation = (\r\n    pointBase,\r\n    pointShift,\r\n    baseId,\r\n    targetId,\r\n    baseOme\r\n  ) => {\r\n    calculateTransformationMatrix(\r\n      pointBase,\r\n      pointShift,\r\n      this.props.ome,\r\n      baseId,\r\n      targetId,\r\n      baseOme,\r\n      (h, tfact) => {\r\n        let marks = this.transformLandmarkNoOffset(h, 1);\r\n        let tOffset = this.generateTransformationOffset(marks);\r\n        h[2] += tOffset.x;\r\n        h[5] += tOffset.y;\r\n        let offset = [];\r\n        offset.push(tOffset.x);\r\n        offset.push(tOffset.y);\r\n        this.transformLandmark(h, 1);\r\n        this.transformAnnotation(h, 1);\r\n        this.props.tiles.setTransformationMatnFactnOff(\r\n          h,\r\n          this.props.fileId,\r\n          tfact,\r\n          offset\r\n        );\r\n        this.reset();\r\n      }\r\n    );\r\n  };\r\n\r\n  pushRegTile = (tileId, colImg, channel) => {\r\n    let mat = this.props.tiles.getTransformationMatrix(this.props.fileId);\r\n    let fact = this.props.tiles.getTransformationFactor(this.props.fileId);\r\n    if (Array.isArray(mat)) {\r\n      if (mat.length > 0) {\r\n        this.imgRegistered = false;\r\n        this.callbackCounter += 1;\r\n        if (this.state.isLoadingTiles === false) {\r\n          this.setMountedState({ isLoadingTiles: true });\r\n        }\r\n        var t0 = performance.now();\r\n        tileRegistration(colImg, tileId, mat, fact, channel, (Img) => {\r\n          this.props.tiles.pushColoredImages(Img, tileId);\r\n          var t1 = performance.now();\r\n          console.log(\"Tile registration took \", t1 - t0, \" ms.\");\r\n          if (mat.length === 0) {\r\n            console.log(\"empty mat\");\r\n          }\r\n          this.callbackCounter -= 1;\r\n          if (this.callbackCounter === 0) {\r\n            this.imgRegistered = true;\r\n            this.setMountedState({ isLoadingTiles: false });\r\n          }\r\n        });\r\n      }\r\n    }\r\n  };\r\n\r\n  pushColoredImage = (c, tileId, visImg) => {\r\n    let channel = this.props.histogramConfig.channels[c];\r\n    if (\r\n      (this.props.histogramConfig.channels.length < 2 &&\r\n        channel.color === \"#ffffff\") ||\r\n      channel.color === -1\r\n    ) {\r\n      // rgb channel\r\n      if (!this.props.tiles.getColoredImage(tileId)) {\r\n        let colImg = configureImage(visImg, channel);\r\n        this.props.tiles.pushColoredImages(colImg, tileId);\r\n        this.pushRegTile(tileId, visImg, channel);\r\n      }\r\n    } else {\r\n      // colored images cache\r\n      if (!this.props.tiles.getColoredImage(tileId) && visImg.width > 0) {\r\n        let colImg = colorInImage(visImg, channel);\r\n        this.props.tiles.pushColoredImages(colImg, tileId);\r\n        this.pushRegTile(tileId, visImg, channel);\r\n      }\r\n    }\r\n  };\r\n\r\n  loadAllTiles = () => {\r\n    for (let lv = 0; lv < Math.min(2, this.props.ome.maxLevel + 1); lv++) {\r\n      // calculate the number of grid columns for this level\r\n      let cols = Math.pow(2, lv);\r\n      for (let x = 0; x < cols; x++) {\r\n        for (let y = 0; y < cols; y++) {\r\n          for (let c = 0; c < this.props.ome.channels.length; c++) {\r\n            let page = this.getPageForChannel(c);\r\n            // load image first if missing\r\n            let tileId =\r\n              page + \",\" + lv + \",\" + x + \",\" + y + \",\" + this.props.fileId;\r\n            if (!this.props.tiles.getVisibleImage(tileId)) {\r\n              let visImg = new Image();\r\n              visImg.src = Backend.renderRegion({\r\n                id: this.props.fileId,\r\n                page: page,\r\n                lv: lv,\r\n                x: x,\r\n                y: y,\r\n              });\r\n              visImg.onload = () => {\r\n                this.pushColoredImage(c, tileId, visImg);\r\n                this.props.tiles.pushVisibleImage(visImg, tileId);\r\n                // set context width and height\r\n                this.props.tiles.setImgWidth(visImg.width);\r\n                this.props.tiles.setImgHeight(visImg.height);\r\n              };\r\n            } else if (this.props.tiles.getVisibleImage(tileId).complete) {\r\n              // set context width and height\r\n              let img = this.props.tiles.getVisibleImage(tileId);\r\n              this.props.tiles.setImgWidth(img.width);\r\n              this.props.tiles.setImgHeight(img.height);\r\n              this.pushColoredImage(\r\n                c,\r\n                tileId,\r\n                this.props.tiles.getVisibleImage(tileId)\r\n              );\r\n            }\r\n          }\r\n        }\r\n      }\r\n    }\r\n\r\n    this.preloadNextFrames();\r\n\r\n    this.props.changeHiConfig(true);\r\n    this.props.tiles.setHistogramConfig(this.props.histogramConfig);\r\n  };\r\n\r\n  preloadNextFrames = () => {\r\n    if (this.state.playDirection > 0) {\r\n      for (\r\n        let t = this.state.t;\r\n        t <\r\n        Math.min(\r\n          this.props.ome.sizeT - 1,\r\n          this.state.t + this.state.bufferSize\r\n        );\r\n        t++\r\n      ) {\r\n        this.preloadFrame(this.state.z, t);\r\n      }\r\n    } else {\r\n      for (\r\n        let t = this.state.t;\r\n        t >= Math.max(0, this.state.t - this.state.bufferSize);\r\n        t--\r\n      ) {\r\n        this.preloadFrame(this.state.z, t);\r\n      }\r\n    }\r\n  };\r\n\r\n  preloadNextZFrames = () => {\r\n    if (this.state.playDirectionZ > 0) {\r\n      for (\r\n        let z = this.state.z;\r\n        z <\r\n        Math.min(\r\n          this.props.ome.sizeZ - 1,\r\n          this.state.z + this.state.bufferSize\r\n        );\r\n        z++\r\n      ) {\r\n        this.preloadFrame(z, this.state.t);\r\n      }\r\n    } else {\r\n      for (\r\n        let z = this.state.z;\r\n        z >= Math.max(0, this.state.z - this.state.bufferSize);\r\n        z--\r\n      ) {\r\n        this.preloadFrame(z, this.state.t);\r\n      }\r\n    }\r\n  };\r\n\r\n  preloadFrame = (z, t) => {\r\n    for (let lv = 0; lv < 1; lv++) {\r\n      // calculate the number of grid columns for this level\r\n      let cols = Math.pow(2, lv);\r\n      for (let x = 0; x < cols; x++) {\r\n        for (let y = 0; y < cols; y++) {\r\n          for (let c = 0; c < this.props.ome.channels.length; c++) {\r\n            let page = this.getPage(c, z, t);\r\n            // load image first if missing\r\n            let tileId =\r\n              page + \",\" + lv + \",\" + x + \",\" + y + \",\" + this.props.fileId;\r\n            if (!this.props.tiles.getVisibleImage(tileId)) {\r\n              let visImg = new Image();\r\n              visImg.src = Backend.renderRegion({\r\n                id: this.props.fileId,\r\n                page: page,\r\n                lv: lv,\r\n                x: x,\r\n                y: y,\r\n              });\r\n              visImg.onload = () => {\r\n                this.pushColoredImage(c, tileId, visImg);\r\n              };\r\n            } else if (this.props.tiles.getVisibleImage(tileId).complete) {\r\n              this.pushColoredImage(\r\n                c,\r\n                tileId,\r\n                this.props.tiles.getVisibleImage(tileId)\r\n              );\r\n            }\r\n          }\r\n        }\r\n      }\r\n    }\r\n  };\r\n\r\n  zoomToFactor = (factor) => {\r\n    let scaleTarget = this.state.initialScale * factor;\r\n    this.zoomTo = scaleTarget;\r\n    this.zoomPoint = { x: this.canvas.width / 2, y: this.canvas.height / 2 };\r\n    this.zoomDirection =\r\n      this.getScale() < scaleTarget ? scaleTarget : -scaleTarget;\r\n\r\n    setTimeout(() => this.forceUpdate(), 10);\r\n  };\r\n\r\n  zoomOriginal = () => {\r\n    // no zooming enabled\r\n    if (\r\n      this.props.resultTab.getZoomLevelFixed() &&\r\n      this.props.resultTabActive()\r\n    ) {\r\n      return;\r\n    }\r\n\r\n    this.zoomOneToN(1);\r\n  };\r\n\r\n  zoomOneToN = (x) => {\r\n    // no zooming enabled\r\n    if (\r\n      this.props.resultTab.getZoomLevelFixed() &&\r\n      this.props.resultTabActive()\r\n    ) {\r\n      return;\r\n    }\r\n\r\n    this.zoomTo = x;\r\n    this.zoomPoint = { x: this.canvas.width / 2, y: this.canvas.height / 2 };\r\n    this.zoomDirection = this.getScale() < x ? 1 : -1;\r\n\r\n    setTimeout(() => this.forceUpdate(), 10);\r\n  };\r\n\r\n  zoomDelta = (delta) => {\r\n    // no zooming enabled\r\n    if (\r\n      this.props.resultTab.getZoomLevelFixed() &&\r\n      this.props.resultTabActive()\r\n    ) {\r\n      return;\r\n    }\r\n\r\n    // zoom middle\r\n    this.zoomPoint = { x: this.canvas.width / 2, y: this.canvas.height / 2 };\r\n    // zoom in (1) or out (-1)\r\n    this.zoomDirection = delta < 0 ? 1 : -1;\r\n\r\n    // set destination scale value\r\n    let newZoom = this.getScale() * Math.pow(1.2, this.zoomDirection);\r\n\r\n    // max zoom out value\r\n    if (newZoom < (0.75 * this.canvas.height) / this.vh) {\r\n      newZoom = (0.75 * this.canvas.height) / this.vh;\r\n    }\r\n\r\n    // max zoom in value\r\n    if (newZoom > (2 * this.vh) / this.canvas.height) {\r\n      newZoom = (2 * this.vh) / this.canvas.height;\r\n    }\r\n\r\n    this.zoomTo = newZoom;\r\n\r\n    // redraw ui\r\n    this.forceUpdate();\r\n  };\r\n\r\n  zoomFit = () => {\r\n    // no zooming enabled\r\n    if (\r\n      this.props.resultTab.getZoomLevelFixed() &&\r\n      this.props.resultTabActive()\r\n    ) {\r\n      return;\r\n    }\r\n\r\n    this.canvasTranform(1, 0, 0, 1, 0, 0);\r\n    this.zoomOut();\r\n    this.zoomMoveActionDebounced(); //to save zoomObject\r\n  };\r\n\r\n  /**\r\n   * Performs a context.setTransform, whilst ensuring that the pixel\r\n   * representation is according to zoomlevel\r\n   * @param {*} a Horizontal scaling. A value of 1 results in no scaling.\r\n   * @param {*} b Vertical skewing.\r\n   * @param {*} c Horizontal skewing.\r\n   * @param {*} d Vertical scaling. A value of 1 results in no scaling.\r\n   * @param {*} e Horizontal translation (moving).\r\n   * @param {*} f Vertical translation (moving).\r\n   */\r\n  canvasTranform = (a, b, c, d, e, f) => {\r\n    // disable smoothing to see pixels of image\r\n    if (this.getScale() > 5) {\r\n      this.ctx.imageSmoothingEnabled = false;\r\n    } else {\r\n      this.ctx.imageSmoothingEnabled = true;\r\n    }\r\n    // console.debug(this.getScale());\r\n    // Actual transformation\r\n    this.ctx.setTransform(a, b, c, d, e, f);\r\n  };\r\n\r\n  centerRoi = (rect) => {\r\n    const { roiLayers, selectedLayer, project } = this.props;\r\n    // make roi/rect in center of screen\r\n    if (this.state.initialized) {\r\n      // if change file in histo classification or point counting module\r\n      if (!rect) {\r\n        let selRoi = this.props.resultTab.getSelectedRoi();\r\n        rect = roiLayers[selectedLayer].layer.regionRois[selRoi].bounds;\r\n        let toolName = \"none\";\r\n        if (project.type.includes(\"HistoClassification\")) {\r\n          toolName = \"selectiontile\";\r\n        } else if (project.type.includes(\"HistoPointCounting\")) {\r\n          toolName = \"pointcountingtile\";\r\n        }\r\n        this.props.onChangeTool(toolName);\r\n\r\n        let roiItem = {\r\n          maxX: roiLayers[selectedLayer].layer.regionRois[selRoi].bounds.left,\r\n          maxY: roiLayers[selectedLayer].layer.regionRois[selRoi].bounds.top,\r\n          minX: roiLayers[selectedLayer].layer.regionRois[selRoi].bounds.right,\r\n          minY: roiLayers[selectedLayer].layer.regionRois[selRoi].bounds.bottom,\r\n          roi: roiLayers[selectedLayer].layer.regionRois[selRoi],\r\n        };\r\n\r\n        this.props.tools[toolName].setNextTile(roiItem);\r\n\r\n        // zoom to corresponding zoom level\r\n        if (\r\n          project.type.includes(\"HistoClassification\") ||\r\n          project.type.includes(\"HistoPointCounting\")\r\n        ) {\r\n          let gridSize = Math.sqrt(\r\n            roiLayers[selectedLayer].layer.regionRois.length\r\n          );\r\n          this.setZoomLevelForGridSize(gridSize);\r\n        }\r\n      }\r\n\r\n      let xKoord = (rect.left + rect.right) / 2; // x- and y-coordinate for zoomPoint\r\n      let yKoord = (rect.top + rect.bottom) / 2;\r\n      let pt1 = { x: xKoord, y: yKoord };\r\n\r\n      // make roi in center of screen:\r\n      let pt2 = pt1;\r\n      this.ctx.translate(\r\n        this.getPositionInImage(2).x - pt2.x,\r\n        this.getPositionInImage(2).y - pt2.y\r\n      );\r\n    } else {\r\n      setTimeout(() => this.centerRoi(rect), 400);\r\n    }\r\n    this.zoomMoveActionDebounced();\r\n  };\r\n\r\n  zoomInRoi = () => {\r\n    // make roi in center of screen\r\n    if (this.props.zoomROI && this.state.initialized) {\r\n      let xKoord = (this.props.zoomLeft + this.props.zoomRight) / 2; // x- and y-coordinate for zoomPoint\r\n      let yKoord = (this.props.zoomTop + this.props.zoomBottom) / 2;\r\n      let pt1 = {\r\n        x: xKoord,\r\n        y: yKoord,\r\n      };\r\n\r\n      // make roi in center of screen:\r\n      let pt2 = pt1;\r\n      this.ctx.translate(\r\n        this.getPositionInImage(2).x - pt2.x,\r\n        this.getPositionInImage(2).y - pt2.y\r\n      );\r\n\r\n      // zoom to roi:\r\n      while (\r\n        this.getPositionInImage(0).x < this.props.zoomLeft &&\r\n        this.getPositionInImage(1).x > this.props.zoomRight &&\r\n        this.getPositionInImage(0).y < this.props.zoomTop &&\r\n        this.getPositionInImage(1).y > this.props.zoomBottom\r\n      ) {\r\n        // as long as roi is completely inside\r\n        this.ctx.translate(pt1.x, pt1.y);\r\n        let factor = Math.pow(20, 40 / 1000);\r\n        this.ctx.scale(factor, factor);\r\n        this.ctx.translate(-pt1.x, -pt1.y);\r\n      }\r\n\r\n      //this.props.zoomROI1(1);\r\n      this.props.tzoomROI1(this.props.fileId);\r\n      this.zoomMoveActionDebounced();\r\n    }\r\n  };\r\n\r\n  //set structureIds if not set in first roi of\r\n  setStructureIds = () => {\r\n    for (let i = 1; i < this.props.roiLayers.length; i++) {\r\n      let regionRois = this.props.roiLayers[i].layer.regionRois;\r\n      let structure = this.props.structures[i];\r\n      if (regionRois.length > 0 && regionRois[0].structureId === 0) {\r\n        this.props.roiLayers[i].layer.regionRois = regionRois.map((roi) => {\r\n          roi.structureId = structure.id;\r\n          return roi;\r\n        });\r\n      }\r\n    }\r\n  };\r\n\r\n  setSubtypeRois = () => {\r\n    // check if rois are in subtype roilayer (e.g. opening project or run iam) --> put in parent roilayer\r\n    // get all childstructures\r\n    let childStructures = [];\r\n    for (let i = 0; i < this.props.structures.length; i++) {\r\n      if (\r\n        this.props.structures[i].isSubtype &&\r\n        this.props.structures[i].classificationSubtype\r\n      ) {\r\n        childStructures.push(i);\r\n      }\r\n    }\r\n\r\n    // make childrois in parentlayer\r\n    for (let i = 0; i < this.props.structures.length; i++) {\r\n      if (\r\n        this.props.roiLayers &&\r\n        this.findRoiLayer(this.props.roiLayers, this.props.structures[i]).layer\r\n          .regionRois.length !== 0 &&\r\n        childStructures.includes(i)\r\n      ) {\r\n        let layer = [];\r\n        let strs = this.props.structures;\r\n\r\n        // get parentlayer rois\r\n        let parentIndex = getParentIndexLayer(\r\n          this.props.structures[i],\r\n          this.props.structures\r\n        );\r\n        let parentLayerRois =\r\n          this.props.roiLayers[parentIndex].layer.regionRois;\r\n\r\n        this.props.roiLayers[i].layer.regionRois.forEach(function (element) {\r\n          // check if object exists in parent layer\r\n          let doubleObject = false;\r\n          let doubleObjectIndex = 0;\r\n          parentLayerRois.forEach(function (parentRoi, idx) {\r\n            if (\r\n              parentRoi.bounds.left === element.bounds.left &&\r\n              parentRoi.bounds.top === element.bounds.top &&\r\n              parentRoi.bounds.right === element.bounds.right &&\r\n              parentRoi.bounds.bottom === element.bounds.bottom\r\n            ) {\r\n              doubleObject = true;\r\n              doubleObjectIndex = idx;\r\n            }\r\n          });\r\n\r\n          // set element properties\r\n          element.subtypeName = strs[i].label;\r\n          element.color = strs[i].color;\r\n          element.structureId = strs[i].id;\r\n          element.isSubtype = true;\r\n\r\n          if (!doubleObject) {\r\n            // add to new layer that gets appended at end of parent\r\n            layer.push(element);\r\n          } else {\r\n            // replace element in parent layer with this element\r\n            parentLayerRois.splice(doubleObjectIndex, 1, element);\r\n          }\r\n        });\r\n\r\n        // make childlayer empty and put child rois in parentlayer\r\n        let arrayA = parentLayerRois;\r\n        let newArray = arrayA.concat(layer);\r\n        this.props.roiLayers[parentIndex].layer.regionRois = newArray;\r\n        this.props.roiLayers[i].layer.regionRois = [];\r\n        // build tree for parent\r\n        this.props.roiLayers[parentIndex].tree = new RBush();\r\n        for (let regionRoi of newArray) {\r\n          this.props.roiLayers[parentIndex].tree.insert(regionRoi.treeItem);\r\n        }\r\n        this.props.roiLayers[i].tree = new RBush();\r\n      }\r\n    }\r\n  };\r\n\r\n  // triggered by moving or zooming\r\n  zoomMoveAction = () => {\r\n    const p1 = this.getPointInCanvas({ x: 0, y: 0 });\r\n    const p2 = this.getPointInCanvas({\r\n      x: this.canvas.width,\r\n      y: this.canvas.height,\r\n    });\r\n    // save current zoom and position for reload\r\n    const zoomObject = {\r\n      zoomRoi: true,\r\n      zoomLeft: p1.x,\r\n      zoomRight: p1.x + p2.x - p1.x,\r\n      zoomTop: p1.y,\r\n      zoomBottom: p1.y + p2.y - p1.y,\r\n    };\r\n    if (!this.props.showFullscreen) {\r\n      this.props.persistentStorage.save(\r\n        \"zoomObject\" + this.props.fileId,\r\n        zoomObject\r\n      );\r\n    }\r\n    this.props.updateVisibleROIDebounced(p1, p2);\r\n  };\r\n\r\n  zoomMoveActionDebounced = debounce(this.zoomMoveAction, 100);\r\n\r\n  moveAnnotations = () => {\r\n    for (let struct of this.props.roiLayers) {\r\n      let newRegionList = [];\r\n      if (struct.layer.regionRois.length > 0) {\r\n        for (let roi of struct.layer.regionRois) {\r\n          let newRegion = [];\r\n          for (let region of roi.regions[0]) {\r\n            let point = [region[0] + 1, region[1] - 0.5];\r\n            newRegion.push(point);\r\n          }\r\n          let newRoi = new RegionROI(newRegion);\r\n          newRegionList.push(newRoi);\r\n        }\r\n        struct.tree.clear();\r\n        struct.layer.regionRois = newRegionList;\r\n        struct.tree.load(newRegionList.map((item) => item.treeItem));\r\n      }\r\n    }\r\n  };\r\n\r\n  updateZ = (z, minZ = this.state.minZ, maxZ = this.state.maxZ) => {\r\n    this.setMountedState({ z: z, minZ: minZ, maxZ: maxZ });\r\n    this.props.updateGlobalZ(z, minZ, maxZ);\r\n  };\r\n\r\n  updateT = (t) => {\r\n    this.setMountedState({ t: t });\r\n    this.props.updateGlobalT(t);\r\n  };\r\n\r\n  drawVisibleImage = () => {\r\n    this.zoomInRoi(); // zoom to roi if middle mouse button clicked on gallery image\r\n    this.setStructureIds(); //set structureIds if first one is 0 and not base roi\r\n    this.setSubtypeRois(); // set subtypes if iam is finished\r\n\r\n    // calc deltatime for animations and fps\r\n    let t1 = performance.now();\r\n    let dt = t1 - this.t0;\r\n    this.t0 = t1;\r\n\r\n    // calc smoothed fps\r\n    this.lastFps.pop();\r\n    this.lastFps = [1000 / dt, ...this.lastFps];\r\n    this.fps = Math.round(\r\n      this.lastFps.reduce((acc, val) => (acc += val)) / this.lastFps.length\r\n    );\r\n    if (FPS) {\r\n      this.setMountedState({\r\n        fps: this.fps,\r\n      });\r\n    }\r\n\r\n    // time playback\r\n    if (this.state.playing) {\r\n      let newT =\r\n        this.state.t + (dt / 60000) * this.state.sr * this.state.playDirection;\r\n      if (newT >= this.props.ome.sizeT) {\r\n        newT = 0;\r\n      } else if (newT < 0) {\r\n        newT = this.props.ome.sizeT - 0.001;\r\n      }\r\n      this.updateT(newT);\r\n      this.preloadNextFrames();\r\n    }\r\n\r\n    // time playback\r\n    if (this.state.playingZ) {\r\n      let newZ =\r\n        this.state.z +\r\n        (dt / 60000) * this.state.zsr * this.state.playDirectionZ;\r\n      if (newZ > this.props.ome.sizeZ - 1) {\r\n        newZ = 0;\r\n      } else if (newZ < 0) {\r\n        newZ = this.props.ome.sizeZ - 1;\r\n      } else {\r\n        newZ = newZ < 0 ? this.props.ome.sizeZ - 1 : newZ;\r\n      }\r\n      this.updateZ(newZ);\r\n      this.preloadNextZFrames();\r\n    }\r\n\r\n    // nothing to draw if we haven't loaded our meta data yet\r\n    if ((!this.props.ome || !this.canvas) && this.keepRendering) {\r\n      // request next animation frame\r\n      requestAnimationFrame(() => this.draw());\r\n      return;\r\n    }\r\n\r\n    // call the initialization if the viewer is not initalized yet\r\n    if (!this.state.initialized) {\r\n      // do we have our top region already loaded? (then -> this.vw is greater 0)\r\n      if (this.imgLoaded && this.imgRegistered) {\r\n        // do initial placement\r\n        this.zoomOut();\r\n      } else {\r\n        this.loadAllTiles();\r\n      }\r\n    }\r\n\r\n    // only set z once\r\n    if (!this.state.initializedZ) {\r\n      let z = this.props.persistentStorage.load(\"z\");\r\n      if (typeof z === \"undefined\") {\r\n        z = Math.floor(this.props.ome.sizeZ / 2);\r\n      }\r\n      let minZ = this.props.persistentStorage.load(\"minZ\");\r\n      if (typeof minZ === \"undefined\") {\r\n        minZ = 0;\r\n      }\r\n      let maxZ = this.props.persistentStorage.load(\"maxZ\");\r\n      if (typeof maxZ === \"undefined\") {\r\n        maxZ = this.props.ome.sizeZ - 1;\r\n      }\r\n      this.updateZ(z, minZ, maxZ);\r\n      this.props.tiles.setZLevel(Math.floor(this.props.ome.sizeZ / 2));\r\n      this.setMountedState({\r\n        minZ,\r\n        maxZ,\r\n        initializedZ: true,\r\n      });\r\n    }\r\n\r\n    if (this.zoomTo) {\r\n      if (typeof this.zoomPoint === \"undefined\") {\r\n        this.zoomPoint = { x: this.lastX, y: this.lastY };\r\n      }\r\n      if (this.zoomDirection > 0 && this.getScale() < this.zoomTo) {\r\n        // zoom in\r\n        // calc our transformation offset\r\n        let pt = this.getPointInCanvas({\r\n          x: this.zoomPoint.x,\r\n          y: this.zoomPoint.y,\r\n        });\r\n\r\n        this.ctx.translate(pt.x, pt.y);\r\n        // calc scale factor (zoom per second)\r\n        let factor = Math.pow(20, 40 / 1000);\r\n        // perform scaling\r\n        this.ctx.scale(factor, factor);\r\n        if (this.getScale() > this.zoomTo) {\r\n          this.canvasTranform(\r\n            this.zoomTo,\r\n            this.ctx.getTransform().b,\r\n            this.ctx.getTransform().c,\r\n            this.zoomTo,\r\n            this.ctx.getTransform().e,\r\n            this.ctx.getTransform().f\r\n          );\r\n        }\r\n        // restore our offset\r\n        this.ctx.translate(-pt.x, -pt.y);\r\n        // update screen, update scalebar etc\r\n        this.updatePreviewRect(this.props.activeTool);\r\n        this.zoomMoveActionDebounced();\r\n      } else if (this.zoomDirection < 0 && this.getScale() > this.zoomTo) {\r\n        // zoom out\r\n        // calc our transformation offset\r\n        let pt = this.getPointInCanvas({\r\n          x: this.zoomPoint.x,\r\n          y: this.zoomPoint.y,\r\n        });\r\n        this.ctx.translate(pt.x, pt.y);\r\n        // calc scale factor (zoom per second)\r\n        let factor = Math.pow(20, -40 / 1000);\r\n        // perform scaling\r\n        this.ctx.scale(factor, factor);\r\n\r\n        if (this.getScale() < this.zoomTo) {\r\n          this.canvasTranform(\r\n            this.zoomTo,\r\n            this.ctx.getTransform().b,\r\n            this.ctx.getTransform().c,\r\n            this.zoomTo,\r\n            this.ctx.getTransform().e,\r\n            this.ctx.getTransform().f\r\n          );\r\n        }\r\n        // restore our offset\r\n        this.ctx.translate(-pt.x, -pt.y);\r\n        // update screen, update scalebar etc\r\n\r\n        this.updatePreviewRect(this.props.activeTool);\r\n        this.zoomMoveActionDebounced();\r\n      } else {\r\n        // we reached the destination zoom level\r\n        this.zoomTo = null;\r\n      }\r\n    }\r\n\r\n    // get world size from ome metadata\r\n    this.vw = this.props.ome.sizeX;\r\n    this.vh = this.props.ome.sizeY;\r\n\r\n    // Clear the entire canvas\r\n    let p1 = this.getPointInCanvas({ x: 0, y: 0 });\r\n    let p2 = this.getPointInCanvas({\r\n      x: this.canvas.width,\r\n      y: this.canvas.height,\r\n    });\r\n    this.ctx.clearRect(p1.x, p1.y, p2.x - p1.x, p2.y - p1.y);\r\n    this.ctx.save();\r\n    this.canvasTranform(1, 0, 0, 1, 0, 0);\r\n    this.ctx.clearRect(0, 0, this.canvas.width, this.canvas.height);\r\n    this.ctx.restore();\r\n\r\n    this.ctx.fillStyle = \"#000\";\r\n    this.ctx.fillRect(0, 0, this.vw, this.vh);\r\n\r\n    // get pyramid level based on scaling\r\n    this.level = getBaseLog(2, (this.getScale() / this.state.initialScale) * 2);\r\n    // clip our level at lower bound\r\n    if (this.level < 0 || this.level === Infinity) {\r\n      this.level = 0;\r\n    }\r\n    // clip our level at upper bound\r\n    if (this.level > this.props.ome.maxLevel) {\r\n      this.level = this.props.ome.maxLevel;\r\n    }\r\n\r\n    let lv = Math.floor(this.level);\r\n\r\n    // calculate the number of grid columns for this level\r\n    let cols = Math.pow(2, lv);\r\n\r\n    // get visbile column indices\r\n    let visX = [];\r\n    for (let i = 0; i < cols; i++) {\r\n      if (\r\n        this.getPosition().x / this.getScale() < this.vw * ((i + 1) / cols) &&\r\n        (this.getPosition().x + this.canvas.width) / this.getScale() >\r\n          this.vw * (i / cols)\r\n      ) {\r\n        visX.push(i);\r\n      }\r\n    }\r\n    // out of bounds, add first region\r\n    if (visX.length === 0) visX.push(0);\r\n\r\n    // get visbile row indices\r\n    let visY = [];\r\n    for (let i = 0; i < cols; i++) {\r\n      if (\r\n        this.getPosition().y / this.getScale() < this.vh * ((i + 1) / cols) &&\r\n        (this.getPosition().y + this.canvas.height) / this.getScale() >\r\n          this.vh * (i / cols)\r\n      ) {\r\n        visY.push(i);\r\n      }\r\n    }\r\n    // out of bounds, add first region\r\n    if (visY.length === 0) visY.push(0);\r\n\r\n    for (let x of visX) {\r\n      for (let y of visY) {\r\n        //let page = this.getPage();\r\n        //for(let page = 0; page < this.props.histogramConfig.channels.length; page++) {\r\n        for (let c = 0; c < this.props.histogramConfig.channels.length; c++) {\r\n          let page = this.getPageForChannel(c);\r\n          let channel = this.props.histogramConfig.channels[c];\r\n\r\n          // skip disabled channels\r\n          if (!channel.enabled) continue;\r\n          // file +tile id im string\r\n          // load image first if missing\r\n          let tileId =\r\n            page + \",\" + lv + \",\" + x + \",\" + y + \",\" + this.props.fileId;\r\n          if (\r\n            this.zoomTo == null &&\r\n            !this.props.tiles.getVisibleImage(tileId) &&\r\n            !this.state.isLoadingTiles &&\r\n            !this.props.changingFile\r\n            /// TODO: Commented out to fix splitscreen, why has it been added originally?\r\n            //&& this.props.tiles.getFileId() === this.props.fileId\r\n          ) {\r\n            let visImg = new Image();\r\n            visImg.src = Backend.renderRegion({\r\n              id: this.props.fileId,\r\n              page: page,\r\n              lv: lv,\r\n              x: x,\r\n              y: y,\r\n            });\r\n            this.props.tiles.pushVisibleImage(visImg, tileId);\r\n          }\r\n\r\n          let img = this.props.tiles.getVisibleImage(tileId);\r\n          this.imgLoaded = img && img.complete;\r\n          // see https://developer.mozilla.org/en-US/docs/Web/API/CanvasRenderingContext2D/globalCompositeOperation\r\n          const compositionModeFluor = \"screen\";\r\n          const compositionModeBrightfield = \"lighter\";\r\n          if (this.imgLoaded && this.imgRegistered) {\r\n            // image is loaded -> draw it\r\n            this.pushColoredImage(c, tileId, img);\r\n\r\n            if (\r\n              tileId.includes(this.props.activeFileId) &&\r\n              (this.props.tiles.getImgWidth() !== img.width ||\r\n                this.props.tiles.getImgHeight() !== img.height)\r\n            ) {\r\n              // set context width and height (for splitscreen and gallery)\r\n              this.props.tiles.setImgWidth(img.width);\r\n              this.props.tiles.setImgHeight(img.height);\r\n            }\r\n\r\n            // composition should be screen for fluorescence\r\n            if (this.props.ome.channels[c].type === \"fluorescence\") {\r\n              this.ctx.globalCompositeOperation = compositionModeFluor;\r\n            } else {\r\n              this.ctx.globalCompositeOperation = compositionModeBrightfield;\r\n            }\r\n            if (\r\n              Object.prototype.toString.call(\r\n                this.props.tiles.getColoredImage(tileId)\r\n              ) === \"[object HTMLCanvasElement]\" &&\r\n              this.props.tiles.getColoredImage(tileId)\r\n            ) {\r\n              // draw colored image layer\r\n              this.ctx.drawImage(\r\n                this.props.tiles.getColoredImage(tileId),\r\n                (x * this.vw) / cols,\r\n                (y * this.vh) / cols,\r\n                this.vw / cols,\r\n                this.vh / cols\r\n              );\r\n            }\r\n          } else {\r\n            // draw image of previus pyramid level instead\r\n            let factor = 1;\r\n            let parentlv = lv;\r\n            while (parentlv > 0) {\r\n              parentlv--;\r\n              factor *= 2;\r\n              // get id of that image\r\n              tileId =\r\n                page +\r\n                \",\" +\r\n                parentlv +\r\n                \",\" +\r\n                Math.floor(x / factor) +\r\n                \",\" +\r\n                Math.floor(y / factor) +\r\n                \",\" +\r\n                this.props.fileId;\r\n\r\n              // image is loaded -> draw it\r\n              let imgOld = this.props.tiles.getVisibleImage(tileId);\r\n\r\n              if (imgOld && imgOld.complete) {\r\n                this.pushColoredImage(c, tileId, imgOld);\r\n\r\n                // composition should be screen for fluorescence\r\n                // see https://developer.mozilla.org/en-US/docs/Web/API/CanvasRenderingContext2D/globalCompositeOperation\r\n                this.ctx.globalCompositeOperation = compositionModeFluor;\r\n                // draw colored image layer\r\n                if (this.props.tiles.getColoredImage(tileId)) {\r\n                  this.ctx.drawImage(\r\n                    this.props.tiles.getColoredImage(tileId),\r\n                    ((x % factor) * imgOld.width) / factor,\r\n                    ((y % factor) * imgOld.height) / factor,\r\n                    imgOld.width / factor,\r\n                    imgOld.height / factor,\r\n                    (x * this.vw) / cols,\r\n                    (y * this.vh) / cols,\r\n                    this.vw / cols,\r\n                    this.vh / cols\r\n                  );\r\n                }\r\n                break;\r\n              }\r\n            }\r\n          }\r\n        }\r\n      }\r\n    }\r\n    // back to default overlay composition operation\r\n    // see https://developer.mozilla.org/en-US/docs/Web/API/CanvasRenderingContext2D/globalCompositeOperation\r\n    this.ctx.globalCompositeOperation = \"source-over\";\r\n  };\r\n\r\n  draw = () => {\r\n    if (this.objectMode && this.props.activeTool !== \"rectangle\") {\r\n      //deactivate if tool not active anymore\r\n      this.objectMode = false;\r\n    }\r\n    const opacity = this.props.opacity;\r\n    if (this.state.previewRectChanged) {\r\n      this.updatePreviewRect(this.props.activeTool);\r\n    }\r\n\r\n    this.drawVisibleImage();\r\n\r\n    let p1 = this.getPointInCanvas({ x: 0, y: 0 });\r\n    let p2 = this.getPointInCanvas({\r\n      x: this.canvas.width,\r\n      y: this.canvas.height,\r\n    });\r\n\r\n    if (this.getScale() > 5) {\r\n      this.ctx.imageSmoothingEnabled = false;\r\n    } else {\r\n      this.ctx.imageSmoothingEnabled = true;\r\n    }\r\n\r\n    // draw pixel annotation layer\r\n    this.ctx.globalAlpha = 0.5;\r\n    this.ctx.lineWidth = 1 / this.ctx.getTransform().a;\r\n    const scaleFactor = 1 / this.ctx.getTransform().a;\r\n    let drawLayer = this.props.drawLayer;\r\n    let commentLayer = this.props.commentLayer;\r\n    let landmarkLayer = this.props.landmarkLayer;\r\n    const maxGeometries = 15000;\r\n    if (!this.state.limitVisibleRegions) {\r\n      const roiCount = this.props.roiLayers.reduce(\r\n        (a, b) => a + b.layer.regionRois.length,\r\n        0\r\n      );\r\n      if (roiCount > maxGeometries) {\r\n        this.setMountedState({ limitVisibleRegions: true });\r\n      }\r\n    }\r\n\r\n    for (let l = 0; l < this.props.structures.length; l++) {\r\n      let structure = this.props.structures[l];\r\n      const roiLayer = this.props.roiLayers.find((c) => c.id === structure.id);\r\n      if (typeof roiLayer === \"undefined\") {\r\n        console.log(\"undefined layer found for roiLayer id\", structure.id);\r\n        continue;\r\n      }\r\n\r\n      let parentIndex = getParentIndexLayer(structure, this.props.structures);\r\n\r\n      let rr = roiLayer.layer;\r\n      let rRoi = {\r\n        regionRois: [],\r\n        inverted: false,\r\n      };\r\n\r\n      let centerX = p1.x + (p2.x - p1.x) / 2;\r\n      let centerY = p1.y + (p2.y - p1.y) / 2;\r\n\r\n      let visibleRegions = [];\r\n      if (this.state.limitVisibleRegions) {\r\n        if (this.updateCounter > 5) {\r\n          if (this.fps < 10) {\r\n            this.visibleRegionsRadius = this.visibleRegionsRadius * 0.98;\r\n          } else if (this.fps > 20) {\r\n            this.visibleRegionsRadius += 10;\r\n          }\r\n          this.updateCounter = 0;\r\n        }\r\n        this.updateCounter += 1;\r\n        let serachParams = {\r\n          minX: centerX - this.visibleRegionsRadius,\r\n          minY: centerY - this.visibleRegionsRadius,\r\n          maxX: centerX + this.visibleRegionsRadius,\r\n          maxY: centerY + this.visibleRegionsRadius,\r\n        };\r\n        let sarchLayer = structure.isSubtype\r\n          ? this.props.roiLayers[parentIndex]\r\n          : roiLayer;\r\n        visibleRegions = sarchLayer.tree\r\n          .search(serachParams)\r\n          .map((treeItem) => treeItem.roi);\r\n      } else {\r\n        visibleRegions = structure.isSubtype\r\n          ? this.props.roiLayers[parentIndex].layer.regionRois\r\n          : roiLayer.layer.regionRois;\r\n      }\r\n\r\n      let structureHasRois = false;\r\n      if (!structure.isSubtype || !structure.classificationSubtype) {\r\n        structureHasRois = visibleRegions.length > 0 ? true : structureHasRois;\r\n        if (structureHasRois) {\r\n          // get rois for parent or substructure\r\n          rr = visibleRegions.filter(\r\n            (element) => !element.isSubtype && !element.aiAnnotated\r\n          );\r\n          rRoi.regionRois = rr;\r\n        }\r\n      } else if (structure.isSubtype) {\r\n        // get subtype rois from parent layer\r\n        structureHasRois = visibleRegions.length > 0 ? true : structureHasRois;\r\n\r\n        if (structureHasRois) {\r\n          //console.log(\"color1: \" + structure.color);\r\n          rr = visibleRegions.filter(\r\n            (element) => element.structureId === structure.id\r\n          );\r\n          rRoi.regionRois = rr;\r\n        }\r\n      }\r\n\r\n      // check if parent of substructure shows subtype\r\n      let showSubstructure = true;\r\n      if (structure.isSubtype && !structure.classificationSubtype) {\r\n        parentIndex = getParentIndex(structure, this.props.structures);\r\n        if (parentIndex >= 0) {\r\n          showSubstructure = this.props.structures[parentIndex].showSubtypes;\r\n        }\r\n      }\r\n\r\n      // check if parent of subtype is substructure and not unfolded\r\n      if (structure.isSubtype && structure.classificationSubtype) {\r\n        let obj = this.subtypeHasSubstructureParent(structure);\r\n        if (obj.hasStrParent) {\r\n          // if parent is substructure --> check if it is visible\r\n          let parentIdx = getParentIndex(\r\n            this.props.structures[obj.index],\r\n            this.props.structures\r\n          );\r\n          if (parentIdx >= 0) {\r\n            showSubstructure = this.props.structures[parentIdx].showSubtypes;\r\n          }\r\n        }\r\n      }\r\n      if (structure.visible && showSubstructure && structureHasRois) {\r\n        let fillstyle = \"\";\r\n        // This color is the one of the filled shape\r\n        if (!structure.classificationSubtype) {\r\n          // draw parent always in parent color\r\n          if (\r\n            this.props.structures.length > 3 &&\r\n            this.props.structures[3] === structure\r\n          ) {\r\n            //console.log(\"color2: \" + structure.color);\r\n          }\r\n          this.ctx.fillStyle = structure.color;\r\n          fillstyle = structure.color;\r\n        } else {\r\n          // find color for subtypeStructure\r\n          //console.log(\"color3: \" + this.findColor(structure));\r\n          fillstyle = this.findColor(structure);\r\n          this.ctx.fillStyle = fillstyle;\r\n        }\r\n\r\n        if (l === 0) {\r\n          let ptrn = this.ctx.createPattern(this.backgroundPattern, \"repeat\");\r\n          let patternScale = 1 / this.getScale();\r\n          ptrn.setTransform({\r\n            a: patternScale,\r\n            b: 0,\r\n            c: 0,\r\n            d: patternScale,\r\n            e: 0,\r\n            f: 0,\r\n          });\r\n          this.ctx.fillStyle = ptrn;\r\n        }\r\n\r\n        // draw base roi\r\n        this.ctx.strokeStyle = this.state.isBrightfield ? \"black\" : \"white\";\r\n        if (structure.inversed && rRoi.regionRois.length > 0) {\r\n          this.ctx.lineWidth = 2 / this.ctx.getTransform().a;\r\n          this.ctx.globalAlpha = 1.0;\r\n          this.ctx.strokeStyle = this.state.isBrightfield ? \"black\" : \"white\";\r\n          // Draw the shape you want to take out\r\n          this.ctx.beginPath();\r\n          this.ctx.moveTo(0, 0);\r\n          this.ctx.lineTo(this.vw, 0);\r\n          this.ctx.lineTo(this.vw, this.vh);\r\n          this.ctx.lineTo(0, this.vh);\r\n          this.ctx.lineTo(0, 0);\r\n\r\n          for (let roi of rRoi.regionRois) {\r\n            for (let region of roi.regions) {\r\n              if (region[region.length - 1]) {\r\n                this.ctx.moveTo(\r\n                  region[region.length - 1][0],\r\n                  region[region.length - 1][1]\r\n                );\r\n                for (let i = 0; i < region.length; i++) {\r\n                  this.ctx.lineTo(region[i][0], region[i][1]);\r\n                }\r\n              }\r\n            }\r\n          }\r\n\r\n          this.ctx.closePath();\r\n          this.ctx.fill(\"evenodd\");\r\n          this.ctx.stroke();\r\n        } else {\r\n          this.ctx.lineWidth = 1 / this.ctx.getTransform().a;\r\n          this.ctx.globalAlpha = opacity / 2;\r\n          this.ctx.beginPath();\r\n\r\n          visibleRegions = rRoi.regionRois.filter((roi) => {\r\n            return roi.intersects(p1, p2);\r\n          });\r\n\r\n          // Draw visible, non-object regions\r\n          for (const roi of visibleRegions.filter((roi) => !roi.isObject)) {\r\n            let comp = roi.boundsAreaCompare(p1, p2);\r\n            let regions = [];\r\n            regions = roi.getDynamicRegions(comp, visibleRegions.length);\r\n\r\n            for (let points of regions) {\r\n              // //roi.regions,) {\r\n              let region = {\r\n                points: points,\r\n                bounds: roi.bounds,\r\n              };\r\n\r\n              this.ctx.moveTo(points.x, points.y);\r\n              if (points[points.length - 2]) {\r\n                this.ctx.moveTo(\r\n                  points[points.length - 2][0],\r\n                  points[points.length - 2][1]\r\n                );\r\n                for (let i = 0; i < points.length; i++) {\r\n                  this.ctx.lineTo(points[i][0], points[i][1]);\r\n                }\r\n              }\r\n\r\n              if (region[0]) {\r\n                this.ctx.moveTo(\r\n                  region[region.length - 1][0],\r\n                  region[region.length - 1][1]\r\n                );\r\n                for (let i = 0; i < region.length; i++) {\r\n                  this.ctx.lineTo(region[i][0], region[i][1]);\r\n                }\r\n              }\r\n              // show grid labels and tile names\r\n              if (this.props.showGridLabels) {\r\n                // draw tile name of roi / tile in upper right corner\r\n                this.ctx.fillStyle = \"#ff0000\";\r\n                this.ctx.font = \"90px Arial\";\r\n                this.ctx.globalAlpha = 0.8;\r\n                this.ctx.textAlign = \"right\";\r\n                if (roi.bounds.right === this.props.ome.sizeX) {\r\n                  this.ctx.textAlign = \"center\";\r\n                }\r\n                this.ctx.textBaseline = \"top\";\r\n                this.ctx.fillText(\r\n                  roi.tileName,\r\n                  points[points.length - 2][0] +\r\n                    (roi.bounds.right - roi.bounds.left),\r\n                  points[points.length - 2][1] -\r\n                    (roi.bounds.bottom - roi.bounds.top)\r\n                );\r\n\r\n                // if roi / tile is on edge draw col / row name\r\n                this.ctx.fillStyle = \"#ff0000\";\r\n                this.ctx.font = \"300px Arial\";\r\n                this.ctx.globalAlpha = 1;\r\n                // left edge\r\n                if (roi.bounds.left === 0) {\r\n                  let txt = roi.tileName.replace(/[^0-9]/g, \"\");\r\n                  this.ctx.textAlign = \"end\";\r\n                  this.ctx.textBaseline = \"middle\";\r\n                  this.ctx.fillText(\r\n                    txt,\r\n                    points[points.length - 2][0] - 30,\r\n                    points[points.length - 2][1] -\r\n                      (roi.bounds.bottom - roi.bounds.top) / 2\r\n                  );\r\n                }\r\n                // top edge\r\n                if (roi.bounds.top === 0) {\r\n                  let txt = roi.tileName.replace(/[^A-Z]/g, \"\");\r\n                  this.ctx.textAlign = \"center\";\r\n                  if (roi.bounds.right === this.props.ome.sizeX) {\r\n                    this.ctx.textAlign = \"left\";\r\n                  }\r\n                  this.ctx.textBaseline = \"bottom\";\r\n                  this.ctx.fillText(\r\n                    txt,\r\n                    points[points.length - 2][0] +\r\n                      (roi.bounds.right - roi.bounds.left) / 2,\r\n                    points[points.length - 2][1] -\r\n                      (roi.bounds.bottom - roi.bounds.top)\r\n                  );\r\n                }\r\n              }\r\n              this.ctx.globalAlpha = opacity / 2;\r\n              this.ctx.fillStyle = fillstyle;\r\n            }\r\n          }\r\n          this.ctx.closePath();\r\n          this.ctx.fill(\"evenodd\");\r\n          this.ctx.strokeStyle = structure.color;\r\n          this.ctx.lineWidth = 1 / this.ctx.getTransform().a;\r\n          this.ctx.globalAlpha = 1.0;\r\n          this.ctx.stroke();\r\n\r\n          let tempStrokeStyle = this.ctx.strokeStyle;\r\n          let tempLineWidth = this.ctx.lineWidth;\r\n          this.ctx.lineWidth = 2 / this.ctx.getTransform().a;\r\n          this.ctx.strokeStyle = structure.color;\r\n\r\n          this.ctx.beginPath();\r\n\r\n          // Draw non-area objects\r\n          for (const roi of visibleRegions.filter((roi) => roi.isObject)) {\r\n            let regions = roi.getRectRegions();\r\n\r\n            for (let points of regions) {\r\n              if (points[points.length - 2]) {\r\n                this.ctx.moveTo(\r\n                  points[points.length - 2][0],\r\n                  points[points.length - 2][1]\r\n                );\r\n                for (let i = 0; i < points.length; i++) {\r\n                  this.ctx.lineTo(points[i][0], points[i][1]);\r\n                }\r\n              }\r\n            }\r\n          }\r\n          this.ctx.stroke();\r\n\r\n          if (opacity !== 0) {\r\n            this.ctx.strokeStyle = tempStrokeStyle;\r\n            this.ctx.lineWidth = tempLineWidth;\r\n          }\r\n\r\n          if (this.state.showObjectIdx) {\r\n            let layerRois = structure.isSubtype\r\n              ? this.props.roiLayers[parentIndex].layer.regionRois\r\n              : roiLayer.layer.regionRois;\r\n            this.ctx.beginPath();\r\n            // show number for big annotations\r\n            for (const roi of visibleRegions) {\r\n              let comp = roi.boundsAreaCompare(p1, p2);\r\n              // uncomment for showing text in middle of visibly big polys\r\n              if (comp > 0.001) {\r\n                //console.log(\"big poly:\", comp);\r\n                const fontSize = 24 * scaleFactor;\r\n                //const fontMargin = 6 * scaleFactor;\r\n                this.ctx.fillStyle = this.state.isBrightfield\r\n                  ? \"black\"\r\n                  : \"white\";\r\n                this.ctx.font = \"bold \" + fontSize + \"px Arial\";\r\n                this.ctx.globalAlpha = 1.0;\r\n                this.ctx.textAlign = \"center\";\r\n                this.ctx.textBaseline = \"bottom\";\r\n                let center = roi.getPointOnPoly();\r\n                center.y += fontSize / 2;\r\n                let textToShow = layerRois.findIndex(\r\n                  (regionRoi) => regionRoi.uuid === roi.uuid\r\n                );\r\n                textToShow = textToShow + 1;\r\n\r\n                this.ctx.fillText(textToShow.toBase(62), center.x, center.y);\r\n              }\r\n            }\r\n            this.ctx.closePath();\r\n            this.ctx.stroke();\r\n          }\r\n        }\r\n      }\r\n    }\r\n    // if deleting with right click, draw drawing inversed\r\n    if (drawLayer.clear) {\r\n      this.ctx.fillStyle = this.props.structures[this.props.selectedLayer]\r\n        .inversed\r\n        ? this.props.structures[this.props.selectedLayer].color\r\n        : \"black\";\r\n    } else {\r\n      if (this.props.structures[this.props.selectedLayer].isSubtype) {\r\n        this.ctx.fillStyle = this.props.structures[this.props.selectedLayer]\r\n          .inversed\r\n          ? \"black\"\r\n          : this.props.structures[this.props.selectedLayer].color;\r\n      } else {\r\n        this.ctx.fillStyle = this.props.structures[this.props.selectedLayer]\r\n          .inversed\r\n          ? \"black\"\r\n          : this.props.structures[this.props.selectedLayer].color;\r\n      }\r\n    }\r\n\r\n    //draw only colored outline, if drawing objects\r\n    if (this.objectMode) {\r\n      this.ctx.globalAlpha = 1;\r\n      this.ctx.fillStyle = \"transparent\";\r\n      this.ctx.strokeStyle =\r\n        this.props.structures[this.props.selectedLayer].color;\r\n      this.ctx.lineWidth = 2 / this.ctx.getTransform().a;\r\n    } else {\r\n      //draw black outline with filled outline\r\n      this.ctx.globalAlpha = opacity / 2;\r\n      this.ctx.strokeStyle = this.state.isBrightfield ? \"black\" : \"white\";\r\n    }\r\n\r\n    this.ctx.beginPath();\r\n    for (let roi of drawLayer.regionRois) {\r\n      for (let points of roi.regions) {\r\n        if (points.length > 0) {\r\n          this.ctx.moveTo(\r\n            points[points.length - 1][0],\r\n            points[points.length - 1][1]\r\n          );\r\n          for (let i = 0; i < points.length; i++) {\r\n            this.ctx.lineTo(points[i][0], points[i][1]);\r\n          }\r\n        }\r\n      }\r\n    }\r\n    this.ctx.closePath();\r\n    this.ctx.fill(\"evenodd\");\r\n\r\n    this.ctx.globalAlpha = 1;\r\n    if (opacity === 0) {\r\n      this.ctx.strokeStyle =\r\n        this.props.structures[this.props.selectedLayer].color;\r\n      this.ctx.lineWidth = 2 / this.ctx.getTransform().a;\r\n    }\r\n    this.ctx.stroke();\r\n\r\n    this.ctx.strokeStyle = this.state.isBrightfield ? \"black\" : \"white\";\r\n    this.ctx.globalAlpha = opacity / 2;\r\n    this.ctx.lineWidth = 1 / this.ctx.getTransform().a;\r\n    if (\r\n      commentLayer &&\r\n      commentLayer.commentRois &&\r\n      this.props.activeTool === \"comment\"\r\n    ) {\r\n      this.ctx.globalAlpha = 1;\r\n      this.ctx.fillStyle = \"transparent\";\r\n      this.ctx.lineWidth = 4 / this.ctx.getTransform().a;\r\n\r\n      for (let roi of commentLayer.commentRois) {\r\n        this.ctx.beginPath();\r\n        this.ctx.strokeStyle = roi.type === \"commentBox\" ? \"black\" : roi.color;\r\n        let points = roi.regions;\r\n        if (points && points.length > 1) {\r\n          for (let i = 0; i < points.length; i++) {\r\n            this.ctx.lineTo(points[i][0], points[i][1]);\r\n          }\r\n        }\r\n        if (\r\n          roi.type === \"rectangle\" ||\r\n          roi.type === \"region\" ||\r\n          roi.type === \"commentBox\"\r\n        ) {\r\n          this.ctx.closePath();\r\n        }\r\n        this.ctx.stroke();\r\n\r\n        this.ctx.globalAlpha = 0.85;\r\n        this.ctx.fillStyle =\r\n          roi.type === \"commentBox\" ? \"white\" : \"transparent\";\r\n        this.ctx.fill();\r\n        this.ctx.globalAlpha = 1;\r\n\r\n        if (roi.commentValue !== \"\" && roi.regions.length > 1) {\r\n          let angle = 0;\r\n          this.ctx.save();\r\n\r\n          // Translate Text Positions\r\n          if (roi.type === \"rectangle\" || roi.type === \"region\") {\r\n            this.ctx.translate(roi.bounds.right, roi.bounds.bottom + 20);\r\n          } else if (roi.type === \"commentBox\") {\r\n            this.ctx.translate(\r\n              roi.bounds.left + Math.round(5 * scaleFactor),\r\n              roi.bounds.top + Math.round(5 * scaleFactor)\r\n            );\r\n          } else if (roi.type === \"arrow\" || roi.type === \"distance\") {\r\n            let p1 = { x: roi.regions[0][0], y: roi.regions[0][1] };\r\n            let p2 = { x: roi.regions[1][0], y: roi.regions[1][1] };\r\n            let vector = {\r\n              x: p2.x - p1.x,\r\n              y: p2.y - p1.y,\r\n            };\r\n            if (roi.type === \"distance\") {\r\n              this.ctx.translate(\r\n                (roi.bounds.left + roi.bounds.right) / 2,\r\n                (roi.bounds.top + roi.bounds.bottom) / 2\r\n              );\r\n              vector.x /= 20;\r\n              vector.y /= 20;\r\n              if (vector.x < 0) {\r\n                this.ctx.translate(-vector.y, vector.x);\r\n              } else {\r\n                this.ctx.translate(vector.y, -vector.x);\r\n              }\r\n              angle = Math.atan2(p2.y - p1.y, p2.x - p1.x);\r\n              if (angle > Math.PI / 2 || angle < -Math.PI / 2) angle -= Math.PI;\r\n            } else {\r\n              this.ctx.translate(roi.bounds.left, roi.bounds.top);\r\n              if (p1.x > p2.x) {\r\n                this.ctx.translate(-vector.x, 0);\r\n              }\r\n              if (p1.y > p2.y) {\r\n                this.ctx.translate(0, -vector.y);\r\n              }\r\n            }\r\n          }\r\n\r\n          // Do Text Formating\r\n          this.ctx.rotate(angle);\r\n          this.ctx.fillStyle = roi.type === \"commentBox\" ? \"black\" : roi.color;\r\n          let fontSize = Math.round(\r\n            20 * roi.fontScaleFactor * Math.min(scaleFactor, 14)\r\n          );\r\n          // comment back in if old behaviour is wanted -> Font-Size depends on Boxlength and not the scaleFactor in the Scene\r\n          //   roi.type === \"commentBox\"\r\n          //     ? Math.round(20 * roi.fontScaleFactor * Math.min(scaleFactor, 14))\r\n          //    : Math.round(length / 10 * roi.fontScaleFactor);\r\n          this.ctx.font = fontSize + \"px Arial\";\r\n\r\n          if (roi.type === \"arrow\") {\r\n            let p1 = { x: roi.regions[0][0], y: roi.regions[0][1] };\r\n            let p2 = { x: roi.regions[1][0], y: roi.regions[1][1] };\r\n\r\n            this.ctx.textAlign = \"right\";\r\n            this.ctx.textBaseline = \"bottom\";\r\n            if (p1.x > p2.x) {\r\n              this.ctx.textAlign = \"left\";\r\n            }\r\n            if (p1.y > p2.y) {\r\n              this.ctx.textBaseline = \"top\";\r\n            }\r\n          } else {\r\n            this.ctx.textAlign = \"center\";\r\n            this.ctx.textAlign =\r\n              roi.type === \"rectangle\" || roi.type === \"region\"\r\n                ? \"right\"\r\n                : \"center\";\r\n            this.ctx.textAlign = roi.type === \"commentBox\" ? \"left\" : \"center\";\r\n            this.ctx.textBaseline =\r\n              roi.type === \"rectangle\" ||\r\n              roi.type === \"region\" ||\r\n              roi.type === \"commentBox\"\r\n                ? \"top\"\r\n                : \"middle\";\r\n          }\r\n          this.wrapText(\r\n            this.ctx,\r\n            roi.commentValue,\r\n            0,\r\n            0,\r\n            roi.width,\r\n            fontSize + 5\r\n          );\r\n          this.ctx.restore();\r\n        }\r\n      }\r\n    }\r\n    if (landmarkLayer && landmarkLayer.landmarkRois && this.props.showMarks) {\r\n      this.ctx.globalAlpha = 1;\r\n      this.ctx.lineWidth = 2 / this.ctx.getTransform().a;\r\n      let linelength = 15 / this.getScale();\r\n      for (let roi of landmarkLayer.landmarkRois) {\r\n        if (typeof roi.regions !== \"undefined\") {\r\n          this.ctx.beginPath();\r\n          this.ctx.strokeStyle = roi.color;\r\n          let points = roi.regions;\r\n\r\n          let x = points[0];\r\n          let y = points[1];\r\n          this.ctx.lineTo(x, y);\r\n          this.ctx.lineTo(x, y - linelength);\r\n          this.ctx.lineTo(x, y + linelength);\r\n          this.ctx.lineTo(x, y);\r\n          this.ctx.lineTo(x - linelength, y);\r\n          this.ctx.lineTo(x + linelength, y);\r\n          this.ctx.lineTo(x, y);\r\n\r\n          this.ctx.closePath();\r\n          this.ctx.stroke();\r\n\r\n          this.ctx.save();\r\n          this.ctx.translate(x + linelength, y - linelength);\r\n\r\n          const scaleFactor = 1 / this.ctx.getTransform().a;\r\n          let fontSize = Math.round(20 * roi.fontScaleFactor * scaleFactor);\r\n          //* Math.min(scaleFactor, 14)\r\n          this.ctx.globalAlpha = 1;\r\n          this.ctx.font = fontSize + \"px Arial\";\r\n          this.ctx.textAlign = \"center\";\r\n          this.ctx.textBaseline = \"middle\";\r\n          this.ctx.fillStyle = roi.color;\r\n          let val = roi.commentValue;\r\n          this.wrapText(this.ctx, String(val), 0, 0, linelength, linelength);\r\n          this.ctx.restore();\r\n        }\r\n      }\r\n    }\r\n\r\n    //show heatmap while tool is active\r\n    if (this.props.activeTool !== \"heatmap\" && this.showHeatmap) {\r\n      this.showHeatmap = false;\r\n      this.heatmap.setData({ max: 100, data: [] });\r\n    }\r\n\r\n    this.drawUsers();\r\n\r\n\r\n    this.ctx.globalAlpha = 1.0;\r\n    // draw scale bar\r\n    // console.log(\"scalebar\", this.state.showScaleBar, this.state.scaleBarData);\r\n    if (this.state.showScaleBar && this.state.scaleBarData) {\r\n      this.ctx.beginPath();\r\n      this.ctx.strokeStyle = this.state.isBrightfield ? \"black\" : \"white\";\r\n      const scaleFactor = 1 / this.ctx.getTransform().a;\r\n      this.ctx.lineWidth = 3 * scaleFactor;\r\n      const marginRight = 5 * scaleFactor;\r\n      const marginBottom = 14 * scaleFactor;\r\n      const scaleWidth = (this.state.scaleBarData.width - 2) * scaleFactor;\r\n      const stopLineHeight = 16 * scaleFactor;\r\n      const maxScaleWidth = this.state.scaleBarData.maxScaleWidth * scaleFactor;\r\n      const delta = {\r\n        x: this.state.scaleBarData.x * scaleFactor,\r\n        y: this.state.scaleBarData.y * scaleFactor,\r\n      };\r\n      const center = {\r\n        x: p2.x - marginRight - maxScaleWidth / 2 + delta.x,\r\n        y: p2.y - marginBottom + delta.y,\r\n      };\r\n      this.ctx.moveTo(center.x - scaleWidth / 2, center.y);\r\n      this.ctx.lineTo(center.x - scaleWidth / 2, center.y - stopLineHeight / 2);\r\n      this.ctx.lineTo(center.x - scaleWidth / 2, center.y + stopLineHeight / 2);\r\n      this.ctx.lineTo(center.x - scaleWidth / 2, center.y);\r\n      this.ctx.lineTo(center.x + scaleWidth / 2, center.y);\r\n      this.ctx.lineTo(center.x + scaleWidth / 2, center.y - stopLineHeight / 2);\r\n      this.ctx.lineTo(center.x + scaleWidth / 2, center.y + stopLineHeight / 2);\r\n      this.ctx.stroke();\r\n\r\n      const fontSize = 14 * scaleFactor;\r\n      const fontMargin = 6 * scaleFactor;\r\n      this.ctx.fillStyle = this.state.isBrightfield ? \"black\" : \"white\";\r\n      this.ctx.font = \"bold \" + fontSize + \"px Arial\";\r\n      this.ctx.globalAlpha = 1.0;\r\n      this.ctx.textAlign = \"center\";\r\n      this.ctx.textBaseline = \"bottom\";\r\n      this.ctx.fillText(\r\n        this.state.scaleBarData.label,\r\n        center.x,\r\n        center.y - fontMargin\r\n      );\r\n    }\r\n\r\n    // uncomment to debug pixal annotaion regions\r\n    /*let rects = calcBoundingBoxes(this.layer);\r\n    for(let rect of rects) {\r\n      this.ctx.strokeStyle = \"black\"; \r\n      this.ctx.beginPath();\r\n      this.ctx.rect(rect.left, rect.top, rect.right - rect.left, rect.bottom - rect.top)\r\n      this.ctx.closePath();\r\n      this.ctx.stroke();\r\n    }*/\r\n\r\n    // draw rois\r\n    for (let roi of this.props.rois.filter((c) => !c.hovered)) {\r\n      roi.draw({\r\n        selected: roi === this.props.selectedROI,\r\n      });\r\n    }\r\n    for (let roi of this.props.rois.filter((c) => c.hovered)) {\r\n      roi.draw({\r\n        selected: roi === this.props.selectedROI,\r\n      });\r\n    }\r\n\r\n    // draw custom mouse cursor for pen tool\r\n    if (this.props.tools[this.props.activeTool]) {\r\n      this.ctx.lineWidth = 1 / this.ctx.getTransform().a;\r\n      let centerX = p1.x + (p2.x - p1.x) / 2;\r\n      let centerY = p1.y + (p2.y - p1.y) / 2;\r\n      this.props.tools[this.props.activeTool].drawCustomCursor(\r\n        this.ctx,\r\n        this.mousePos,\r\n        this.getScale(),\r\n        this.canvas,\r\n        { x: centerX, y: centerY },\r\n        this.state.mouseOnCanvas\r\n      );\r\n    }\r\n\r\n    // check if tiles are still loading from server\r\n    let isLoadingTiles = false;\r\n    for (let tileId in this.props.tiles.getVisibleImages()) {\r\n      if (this.props.tiles.getVisibleImage(tileId).complete === false) {\r\n        isLoadingTiles = true;\r\n        break;\r\n      }\r\n    }\r\n    if (isLoadingTiles !== this.state.isLoadingTiles) {\r\n      let nowTime = performance.now();\r\n      this.setMountedState(\r\n        {\r\n          isLoadingTiles: isLoadingTiles,\r\n          nowTime: nowTime,\r\n        },\r\n        () => {\r\n          if (!isLoadingTiles) {\r\n            // console.log(\r\n            //   \"loading tiles took \",\r\n            //   performance.now() - this.state.nowTime,\r\n            //   \"ms,\"\r\n            // );\r\n          }\r\n        }\r\n      );\r\n    }\r\n    if (this.props.showWindowTool && this.props.isActive) {\r\n      if (this.props.windowToolRef) {\r\n        this.props.windowToolRef.updateCanvas();\r\n      }\r\n    }\r\n\r\n    // request next animation frame\r\n    if (this.keepRendering) {\r\n      requestAnimationFrame(() => this.draw());\r\n    }\r\n  };\r\n\r\n  // draw user name with small arrow, where mouse of use is currently\r\n  drawUsers = () => {\r\n    const scaleFactor = 1 / this.ctx.getTransform().a;\r\n    const usersData = this.props.projectContext.getUsersData();\r\n\r\n    if (usersData !== null) {\r\n      let idx = 0;\r\n      for (const userData of Object.values(usersData)) {\r\n        const x = userData.x;\r\n        const y = userData.y;\r\n\r\n        const userName = userData.user;\r\n        const textWidth = userName.length * 9;\r\n        const arrowCoords = [\r\n          { x: x + 15 * scaleFactor, y: y + 5 * scaleFactor },\r\n          { x: x + (16 + textWidth) * scaleFactor, y: y + 5 * scaleFactor },\r\n          { x: x + (16 + textWidth) * scaleFactor, y: y + 35 * scaleFactor },\r\n          { x: x + 5 * scaleFactor, y: y + 35 * scaleFactor },\r\n          { x: x + 5 * scaleFactor, y: y + 15 * scaleFactor },\r\n          { x: x, y: y },\r\n        ];\r\n\r\n        this.ctx.globalAlpha = 1.0;\r\n        this.ctx.strokeStyle = colors[idx];\r\n        this.ctx.fillStyle = \"white\";\r\n        this.ctx.beginPath();\r\n\r\n        this.ctx.moveTo(x, y);\r\n        for (let p of arrowCoords) {\r\n          this.ctx.lineTo(p.x, p.y);\r\n        }\r\n        this.ctx.closePath();\r\n        this.ctx.fill();\r\n        this.ctx.stroke();\r\n\r\n        let fontSize = Math.round(20 * scaleFactor);\r\n        this.ctx.globalAlpha = 1;\r\n        this.ctx.font = fontSize + \"px Arial\";\r\n        this.ctx.textAlign = \"left\";\r\n        this.ctx.textBaseline = \"top\";\r\n        this.ctx.fillStyle = colors[idx];\r\n        this.ctx.fillText(userName, x + 10 * scaleFactor, y + 10 * scaleFactor);\r\n        idx++;\r\n      }\r\n    }\r\n  };\r\n\r\n  wrapText = (context, text, x, y, maxWidth, lineHeight, maxHeight) => {\r\n    if (text.split(\"\\n\").length > 1) {\r\n      for (let line of text.split(\"\\n\")) {\r\n        this.wrapText(\r\n          context,\r\n          line,\r\n          x,\r\n          y + this.lineIdx * lineHeight,\r\n          maxWidth,\r\n          lineHeight,\r\n          maxHeight\r\n        );\r\n        this.lineIdx += 1;\r\n      }\r\n      this.lineIdx = 0;\r\n    } else {\r\n      let words = text.split(\" \");\r\n      let line = \"\";\r\n\r\n      for (let n = 0; n < words.length; n++) {\r\n        let testLine = line + words[n] + \" \";\r\n        let metrics = context.measureText(testLine);\r\n        let testWidth = metrics.width;\r\n        if (testWidth > maxWidth && n > 0) {\r\n          context.fillText(line, x, y);\r\n          line = words[n] + \" \";\r\n          y += lineHeight;\r\n          this.lineIdx += 1;\r\n        } else {\r\n          line = testLine;\r\n        }\r\n      }\r\n      context.fillText(line, x, y);\r\n    }\r\n  };\r\n\r\n  subtypeHasSubstructureParent = (structure) => {\r\n    // check if subtype has substructure as parent\r\n    let obj = {\r\n      hasStrParent: false,\r\n      index: -1,\r\n    };\r\n\r\n    let index = this.props.structures.findIndex(\r\n      (element) => element === structure\r\n    );\r\n    while (\r\n      this.props.structures[index].subtypeLevel !== 0 &&\r\n      !obj.hasStrParent\r\n    ) {\r\n      index = getParentIndex(\r\n        this.props.structures[index],\r\n        this.props.structures\r\n      );\r\n      obj.index = index;\r\n      // if not classification subtype --> substructure\r\n      if (\r\n        !this.props.structures[index].classificationSubtype &&\r\n        this.props.structures[index].isSubtype\r\n      ) {\r\n        obj.hasStrParent = true;\r\n      }\r\n    }\r\n    return obj;\r\n  };\r\n\r\n  findColor = (structure) => {\r\n    // get color for subtype depending on if structure is unfolded (if not unfolded color of parent)\r\n    let parentIndex = this.props.structures.findIndex(\r\n      (element) => element === structure\r\n    );\r\n    while (!this.props.structures[parentIndex].isUnfolded) {\r\n      parentIndex = getParentIndex(\r\n        this.props.structures[parentIndex],\r\n        this.props.structures\r\n      );\r\n    }\r\n    return this.props.structures[parentIndex].color;\r\n  };\r\n\r\n  getChildsofStructure = (parentStructure) => {\r\n    // return direct classification subtypes\r\n    return this.props.structures.filter(\r\n      (element) =>\r\n        element.parentId === parentStructure.id && element.classificationSubtype\r\n    );\r\n  };\r\n\r\n  setNewSelRoi = (roi) => {\r\n    this.selROI = roi;\r\n  };\r\n\r\n  setZoomLevelForGridSize = (gridSize) => {\r\n    // make initial zoomlevel\r\n    this.zoomFit();\r\n    // zoom in that tile is size of viewer\r\n    this.ctx.scale(gridSize, gridSize);\r\n  };\r\n\r\n  classifySelectedRoi = (classId, withMouse) => {\r\n    const { selectedLayer, roiLayers, structures } = this.props;\r\n    // classify selected roi with key shortcut\r\n\r\n    // change getChildsofStructure for multiple subtypelvels\r\n    let childs = this.getChildsofStructure(structures[selectedLayer]);\r\n\r\n    // get parent layer\r\n    let parentIndexLayer = getParentIndexLayer(\r\n      structures[selectedLayer],\r\n      structures\r\n    );\r\n\r\n    let idxRoi = roiLayers[parentIndexLayer].layer.regionRois.findIndex(\r\n      (element) =>\r\n        element.bounds.left === this.selROI.r.bounds.left &&\r\n        element.bounds.top === this.selROI.r.bounds.top &&\r\n        element.bounds.bottom === this.selROI.r.bounds.bottom &&\r\n        element.bounds.right === this.selROI.r.bounds.right\r\n    );\r\n\r\n    let idxStr = structures.findIndex(\r\n      (element) =>\r\n        element.color === this.selROI.colors &&\r\n        element.parentId === structures[selectedLayer].id\r\n    );\r\n\r\n    let parentStructure = false;\r\n    let strToUse = null;\r\n    if (withMouse) {\r\n      // with mouse\r\n      // parent structure\r\n      if (idxStr === -1) {\r\n        parentStructure = true;\r\n        idxStr = selectedLayer;\r\n      }\r\n      strToUse = structures[idxStr];\r\n    } else {\r\n      // with keys\r\n      strToUse = childs[classId - 1];\r\n    }\r\n\r\n    let selectedRoi = roiLayers[parentIndexLayer].layer.regionRois[idxRoi];\r\n    let historyItem = [];\r\n    let histId = structures[parentIndexLayer].id;\r\n    if (\r\n      !parentStructure &&\r\n      idxRoi !== -1 &&\r\n      (childs[classId - 1] || strToUse) &&\r\n      selectedRoi\r\n    ) {\r\n      historyItem.push({ add: false, id: histId, roi: selectedRoi.copy() });\r\n      // set properties of roi for classification\r\n      selectedRoi.color = strToUse.color;\r\n      selectedRoi.isSubtype = true;\r\n      selectedRoi.isAnnotated = true;\r\n      selectedRoi.subtypeName = strToUse.label;\r\n      selectedRoi.structureId = strToUse.id;\r\n      selectedRoi.isLabeled = true;\r\n      selectedRoi.isSelObj = false;\r\n      selectedRoi.aiAnnotated = false;\r\n      historyItem.push({ add: true, id: histId, roi: selectedRoi.copy() });\r\n      window.projectHistory.add(historyItem);\r\n    }\r\n\r\n    if ((classId === 0 || parentStructure) && selectedRoi) {\r\n      historyItem.push({ add: false, id: histId, roi: selectedRoi.copy() });\r\n      selectedRoi.color = structures[selectedLayer].color;\r\n      selectedRoi.isSubtype = false;\r\n      selectedRoi.isAnnotated = false;\r\n      selectedRoi.subtypeName = structures[selectedLayer].label;\r\n      selectedRoi.structureId = structures[selectedLayer].id;\r\n      selectedRoi.isLabeled = false;\r\n      selectedRoi.isSelObj = false;\r\n      selectedRoi.aiAnnotated = false;\r\n      historyItem.push({ add: true, id: histId, roi: selectedRoi.copy() });\r\n      window.projectHistory.add(historyItem);\r\n    }\r\n\r\n    // if changeFile is true --> change file after classification\r\n    setTimeout(() => {\r\n      let nextFileId = this.getNextFileId();\r\n      if (\r\n        this.selROI.changeFile === true &&\r\n        this.selROI.automaticFileChange === true &&\r\n        nextFileId\r\n      ) {\r\n        this.props.onSelectFile(nextFileId);\r\n      }\r\n    }, 1000);\r\n  };\r\n\r\n  getNextFileId = () => {\r\n    const { project, fileId } = this.props;\r\n    let inxCurrentFile = project.files.findIndex(\r\n      (element) => element.id === fileId\r\n    );\r\n\r\n    if (project.files[inxCurrentFile + 1]) {\r\n      return project.files[inxCurrentFile + 1].id;\r\n    } else {\r\n      if (\r\n        this.props.project.type.includes(\"HistoClassification\") ||\r\n        this.props.project.type.includes(\"HistoPointCounting\")\r\n      ) {\r\n        // if last file\r\n        window.showWarningSnackbar(\"Last file.\");\r\n      }\r\n      return null;\r\n    }\r\n  };\r\n\r\n  checkToolInConfig = (toolName) => {\r\n    if (this.props.viewerConfig) {\r\n      if (this.props.viewerConfig.project.toolsInProject[toolName]) {\r\n        return true;\r\n      } else {\r\n        return false;\r\n      }\r\n    }\r\n  };\r\n\r\n  keyDown = (event) => {\r\n    if (\r\n      this.props.tools[this.props.activeTool] &&\r\n      this.props.tools[this.props.activeTool].rendererKeyDown\r\n    ) {\r\n      this.props.tools[this.props.activeTool].rendererKeyDown(event);\r\n    }\r\n  };\r\n\r\n  keyDownSelection = (event) => {\r\n    // change selected roi with arrow keys\r\n    let selection = this.props.tools[this.props.activeTool].onKeyDown(\r\n      event,\r\n      true,\r\n      this.isTilesToolUsed()\r\n    );\r\n\r\n    if (selection) {\r\n      this.selROI = selection;\r\n      this.props.setSelectedRoi(selection);\r\n    }\r\n  };\r\n\r\n  isTilesToolUsed = () => {\r\n    const { roiLayers, selectedLayer } = this.props;\r\n    // check if tiles tool was used to create rois\r\n    let hasLayerTileNames = false;\r\n    if (roiLayers[selectedLayer].layer.regionRois[0]) {\r\n      hasLayerTileNames =\r\n        roiLayers[selectedLayer].layer.regionRois[0].tileName !== \"\";\r\n    }\r\n\r\n    if (this.checkToolInConfig(\"TilesTool\") && hasLayerTileNames) {\r\n      return true;\r\n    } else {\r\n      return false;\r\n    }\r\n  };\r\n\r\n  updateFLChannels = (e) => {\r\n    this.props.tiles.setHistogramConfig(e);\r\n\r\n    this.setMountedState({ histogramConfig: e });\r\n\r\n    // invalidate all cached coloring images\r\n    //this.coloredImages = [];\r\n    this.props.tiles.setColoredImages([]);\r\n    for (let i = 0; i < this.props.structures.length; i++) {\r\n      if (this.props.roiLayers.length > 1) {\r\n        this.props.roiLayers[1].layer.regionRois.forEach(function (point) {\r\n          point.firstTimeGallery = true;\r\n        });\r\n      }\r\n    }\r\n    //this.props.tiles.setColoredImages([]);\r\n\r\n    this.loadAllTiles();\r\n  };\r\n\r\n  onPlayPause = (e, dir) => {\r\n    this.setMountedState({ playing: e, playingZ: false, playDirection: dir });\r\n  };\r\n\r\n  onPlayPauseZ = (e, dir) => {\r\n    this.setMountedState({ playingZ: e, playing: false, playDirectionZ: dir });\r\n  };\r\n\r\n  onSeek = (e, v) => {\r\n    this.updateT(v);\r\n  };\r\n\r\n  onChangeT = (e) => {\r\n    this.updateT(e);\r\n  };\r\n\r\n  onChangeZValue = (z, minZ = this.state.minZ, maxZ = this.state.maxZ) => {\r\n    this.updateZ(z, minZ, maxZ);\r\n    this.props.tiles.setZLevel(z);\r\n    this.props.persistentStorage.save(\"z\", z); //remember for use after project reload or reopen\r\n    this.props.persistentStorage.save(\"minZ\", minZ); //remember for use after project reload or reopen\r\n    this.props.persistentStorage.save(\"maxZ\", maxZ); //remember for use after project reload or reopen\r\n  };\r\n\r\n  onChangeZ = (e, v) => {\r\n    let minZ = v[0];\r\n    let z = v[1];\r\n    let maxZ = v[2];\r\n    this.onChangeZValue(z, minZ, maxZ);\r\n  };\r\n\r\n  onChangeSr = (e) => {\r\n    this.setMountedState({ sr: e });\r\n  };\r\n\r\n  onChangeZSr = (e) => {\r\n    this.setMountedState({ zsr: e });\r\n  };\r\n\r\n  onStep = (e) => {\r\n    this.updateT(\r\n      Math.min(this.props.ome.sizeT - 1, Math.max(0, this.state.t + e))\r\n    );\r\n  };\r\n\r\n  onStepZ = (e) => {\r\n    let zLevel = Math.min(\r\n      this.props.ome.sizeZ - 1,\r\n      Math.max(0, this.state.z + e)\r\n    );\r\n    this.onChangeZValue(zLevel);\r\n  };\r\n\r\n  updatePreviewRectSize = (size) => {\r\n    let scaledWidth = size.width * this.getScale();\r\n    let scaledHeight = size.height * this.getScale();\r\n\r\n    if (\r\n      this.state.previewWidth !== scaledWidth ||\r\n      this.state.previewHeight !== scaledHeight\r\n    ) {\r\n      this.setMountedState({\r\n        previewWidth: scaledWidth,\r\n        previewHeight: scaledHeight,\r\n        previewRectChanged: false,\r\n      });\r\n    }\r\n  };\r\n\r\n  onResize = (event, { size }) => {\r\n    size.width = size.width / this.getScale();\r\n    size.height = size.height / this.getScale();\r\n\r\n    let minSize = 500;\r\n    let maxSize = 2000;\r\n    //let maxSize = 14000;\r\n    size.width = size.width < minSize ? minSize : size.width;\r\n    size.width = size.width > maxSize ? maxSize : size.width;\r\n    size.height = size.height < minSize ? minSize : size.height;\r\n    size.height = size.height > maxSize ? maxSize : size.height;\r\n\r\n    this.props.tools[this.props.activeTool].setPreviewSize(\r\n      size.width,\r\n      size.height\r\n    );\r\n    let newSize = {\r\n      width: this.props.tools[this.props.activeTool].state.prevW,\r\n      height: this.props.tools[this.props.activeTool].state.prevH,\r\n    };\r\n    this.updatePreviewRectSize(newSize);\r\n  };\r\n\r\n  onToggle = (key) => {\r\n    let keyExtender = key.startsWith(\"show\") ? \"\" : this.props.fileId;\r\n    //e.g. \"showMiniMap\", true\r\n    if (this.props.showFullscreen) {\r\n      this.props.persistentStorage.save(\r\n        key + \"Full\" + keyExtender,\r\n        !this.state[key]\r\n      );\r\n    } else {\r\n      this.props.persistentStorage.save(key + keyExtender, !this.state[key]);\r\n    }\r\n\r\n    this.setMountedState({ [key]: !this.state[key] });\r\n  };\r\n\r\n  getLayoutElement = (key) => {\r\n    //used to get e.g. \"showMiniMap\" via rendererRef\r\n    return this.state[key];\r\n  };\r\n\r\n  checkMiniMapVisivility = () => {\r\n    const { hideMiniMap, showMiniMap } = this.state;\r\n    const hideMiniMapThresholdWidth = 600;\r\n    const hideMiniMapThresholdHeight = 400;\r\n    const hideRestrictions =\r\n      this.canvas.width < hideMiniMapThresholdWidth ||\r\n      this.canvas.height < hideMiniMapThresholdHeight;\r\n    let saveString = \"hideMiniMap\" + this.props.fileId;\r\n    if (this.props.showFullscreen) {\r\n      saveString = \"hideMiniMapFull\" + this.props.fileId;\r\n    }\r\n    if (hideRestrictions && !hideMiniMap && showMiniMap) {\r\n      this.props.persistentStorage.save(saveString, true);\r\n      this.onToggle(\"showMiniMap\");\r\n      this.setMountedState({ hideMiniMap: true });\r\n    } else if (!hideRestrictions && hideMiniMap && !showMiniMap) {\r\n      this.props.persistentStorage.save(saveString, false);\r\n      this.onToggle(\"showMiniMap\");\r\n      this.setMountedState({ hideMiniMap: false });\r\n    } else if (!hideRestrictions && hideMiniMap && showMiniMap) {\r\n      this.props.persistentStorage.save(saveString, false);\r\n      this.setMountedState({ hideMiniMap: false });\r\n    }\r\n  };\r\n\r\n  render = () => {\r\n    const { classes, fileId, project, ome, showTimeBar } = this.props;\r\n\r\n    const {\r\n      miniMapKey,\r\n      scaleBarData,\r\n      open,\r\n      anchorEl,\r\n      displayTimeBar,\r\n      displayZStackBar,\r\n      showMiniMap,\r\n      showScaleBar,\r\n      showZStackBar,\r\n      showImageInfo,\r\n      showZoomBar,\r\n      showResultTable,\r\n      showFileNavButtons,\r\n    } = this.state;\r\n\r\n    return (\r\n      <div className={classes.root} ref={(el) => (this.container = el)}>\r\n        <Popper\r\n          open={open}\r\n          anchorEl={anchorEl}\r\n          placement=\"left-start\"\r\n          transition\r\n        >\r\n          {({ TransitionProps }) => (\r\n            <Fade {...TransitionProps} timeout={350}>\r\n              <Paper\r\n                style={{\r\n                  position: \"absolute\",\r\n                  top: 5,\r\n                  right: 0,\r\n                }}\r\n              >\r\n                <ToggleButton\r\n                  classes={classes}\r\n                  title={\"Toggle Navigator\"}\r\n                  name={\"showMiniMap\"}\r\n                  value={showMiniMap}\r\n                  icon={\"MapIcon\"}\r\n                  onToggle={this.onToggle}\r\n                />\r\n                {ome && typeof ome.physicalSizeX !== \"undefined\" && (\r\n                  <ToggleButton\r\n                    classes={classes}\r\n                    title={\"Toggle scalebar\"}\r\n                    name={\"showScaleBar\"}\r\n                    value={showScaleBar}\r\n                    icon={\"faRuler\"}\r\n                    onToggle={this.onToggle}\r\n                  />\r\n                )}\r\n                {displayTimeBar && (\r\n                  <ToggleButton\r\n                    classes={classes}\r\n                    title={\"Toggle time bar\"}\r\n                    name={\"showTimeBar\"}\r\n                    value={showTimeBar}\r\n                    icon={\"faStopwatch\"}\r\n                    onToggle={this.onToggle}\r\n                  />\r\n                )}\r\n                {displayZStackBar && (\r\n                  <ToggleButton\r\n                    classes={classes}\r\n                    title={\"Toggle Z-stack\"}\r\n                    name={\"showZStackBar\"}\r\n                    value={showZStackBar}\r\n                    icon={\"faLayerGroup\"}\r\n                    onToggle={this.onToggle}\r\n                  />\r\n                )}\r\n                <ToggleButton\r\n                  classes={classes}\r\n                  title={\"Toggle image info\"}\r\n                  name={\"showImageInfo\"}\r\n                  value={showImageInfo}\r\n                  icon={\"faInfo\"}\r\n                  onToggle={this.onToggle}\r\n                />\r\n                {!(\r\n                  this.props.project.type.includes(\"HistoClassification\") ||\r\n                  this.props.project.type.includes(\"HistoPointCounting\")\r\n                ) && (\r\n                  <ToggleButton\r\n                    classes={classes}\r\n                    title={\"Toggle zoom info bar\"}\r\n                    name={\"showZoomBar\"}\r\n                    value={showZoomBar}\r\n                    icon={\"LinearScaleIcon\"}\r\n                    onToggle={this.onToggle}\r\n                  />\r\n                )}\r\n                <ToggleButton\r\n                  classes={classes}\r\n                  title={\"Toggle result table\"}\r\n                  name={\"showResultTable\"}\r\n                  value={showResultTable}\r\n                  icon={\"faTable\"}\r\n                  onToggle={this.onToggle}\r\n                />\r\n              </Paper>\r\n            </Fade>\r\n          )}\r\n        </Popper>\r\n\r\n        {this.props.splitscreenCount !== 1 && !this.props.showFullscreen && (\r\n          <Tooltip disableInteractive title=\"Adjust layout\">\r\n            <IconButton\r\n              className={\r\n                this.props.splitscreenCount === 1\r\n                  ? classes.toolbarButtonRootSingle\r\n                  : classes.toolbarButtonRoot\r\n              }\r\n              size=\"small\"\r\n              onClick={(e) =>\r\n                this.setMountedState({\r\n                  open: !this.state.open,\r\n                  anchorEl: e.target,\r\n                })\r\n              }\r\n            >\r\n              <ViewQuilt />\r\n            </IconButton>\r\n          </Tooltip>\r\n        )}\r\n        <div id=\"heatmapDiv\" className={classes.heatmapContainer} />\r\n        <canvas\r\n          id={this.props.canvasId}\r\n          className={classes.canvas}\r\n          style={{\r\n            height: showTimeBar\r\n              ? `calc(100% - ${this.props.timeLineHeight}px)`\r\n              : \"100%\",\r\n            userSelect: \"none\",\r\n          }}\r\n          onContextMenu={(event) => event.preventDefault()}\r\n          onMouseDown={this.mousedown}\r\n          onMouseMove={this.onCanvasMouseMove}\r\n          onMouseLeave={this.onCanvasMouseLeave}\r\n        />\r\n        {(this.state.isLoadingTiles ||\r\n          this.props.projectContext.isLoadingAnnotations) && (\r\n          <LinearProgress\r\n            style={{\r\n              position: \"fixed\",\r\n              top: 64,\r\n              left: 0,\r\n              right: this.props.rightSpace,\r\n            }}\r\n          />\r\n        )}\r\n        {FPS && (\r\n          <p style={{ color: \"#0673C1\" }} className={classes.fps}>\r\n            {this.state.fps + \" FPS\"}\r\n          </p>\r\n        )}\r\n        {!this.state.initialized && (\r\n          <CircularProgress className={classes.progress} />\r\n        )}\r\n        {this.props.tools[this.props.activeTool] &&\r\n          this.props.tools[this.props.activeTool].previewRect &&\r\n          this.props.tools[this.props.activeTool].state.preview && (\r\n            <Resizable\r\n              style={{ display: \"inline-block\" }}\r\n              className={classes.resizableContainer}\r\n              height={this.state.previewHeight}\r\n              width={this.state.previewWidth}\r\n              onResize={this.onResize}\r\n              resizeHandles={[\"se\"]}\r\n            >\r\n              <div\r\n                style={{\r\n                  width: this.state.previewWidth + \"px\",\r\n                  height: this.state.previewHeight + \"px\",\r\n                  border: \"2px solid #0673C1\",\r\n                  position: \"absolute\",\r\n                  top: \"50%\",\r\n                  left: \"50%\",\r\n                  marginLeft: \"-\" + this.state.previewWidth / 2 + \"px\",\r\n                  marginTop: \"-\" + this.state.previewHeight / 2 + \"px\",\r\n                  color: \"#0673C1\",\r\n                  pointerEvents: \"none\",\r\n                  textAlign: \"center\",\r\n                }}\r\n              >\r\n                <div\r\n                  style={{\r\n                    position: \"relative\",\r\n                    left: \"-4px\",\r\n                    top: \"-4px\",\r\n                    width: \"calc(100% + 8px)\",\r\n                    height: \"calc(100% + 8px)\",\r\n                    border: \"2px solid white\",\r\n                  }}\r\n                >\r\n                  <div\r\n                    style={{\r\n                      position: \"relative\",\r\n                      left: \"-4px\",\r\n                      top: \"-4px\",\r\n                      width: \"calc(100% + 8px)\",\r\n                      height: \"calc(100% + 8px)\",\r\n                      border: \"2px solid #0673C1\",\r\n                    }}\r\n                  ></div>\r\n                </div>\r\n              </div>\r\n            </Resizable>\r\n          )}\r\n        {this.state.initialized &&\r\n          showMiniMap &&\r\n          !this.props.resultTab.getZoomLevelFixed() && (\r\n            <MiniMap\r\n              componentRef={(c) => (this.miniMapRef = c)}\r\n              fileId={fileId}\r\n              key={miniMapKey}\r\n              pointerEvents={\r\n                !(\r\n                  this.canvas.style.cursor !== \"default\" ||\r\n                  this.props.drawLayer.regionRois.length > 0\r\n                )\r\n              }\r\n              ome={this.props.ome}\r\n              histogramConfig={this.props.histogramConfig}\r\n              visibleImage={this.props.tiles.getVisibleImages()}\r\n              coloredImages={this.props.tiles.getColoredImages()}\r\n              position={this.getPosition()}\r\n              zoom={this.getScale()}\r\n              canvas={this.canvas}\r\n              canvasId={this.props.canvasId}\r\n              onMoveTo={this.moveTo}\r\n              onScaleOnly={this.onScaleOnly}\r\n              getPageForChannel={this.getPageForChannel}\r\n              chainMouseMove={this.chainMouseMove}\r\n              zoomMouseWheel={this.miniMapZoom}\r\n            />\r\n          )}\r\n\r\n        {this.state.initialized && showZoomBar && (\r\n          <ZoomBar\r\n            key={fileId + \"ZoomBar\"}\r\n            zoom={this.getScale() / this.state.initialScale}\r\n            changeValue={(v) => this.zoomToFactor(v)}\r\n            clickable={\r\n              !(\r\n                project.type.includes(\"HistoClassification\") ||\r\n                project.type.includes(\"HistoPointCounting\")\r\n              )\r\n            }\r\n          />\r\n        )}\r\n        {this.state.initialized && showScaleBar && (\r\n          <ScaleBar\r\n            key={fileId + \"ScaleBar\"}\r\n            pointerEvents={\r\n              !(\r\n                this.canvas.style.cursor !== \"default\" ||\r\n                this.props.drawLayer.regionRois.length > 0\r\n              )\r\n            }\r\n            zoom={this.getScale()}\r\n            ome={this.props.ome}\r\n            setScaleBarData={(data) => {\r\n              if (\r\n                scaleBarData === null ||\r\n                scaleBarData.width !== data.width ||\r\n                scaleBarData.label !== data.label ||\r\n                scaleBarData.x !== data.x ||\r\n                scaleBarData.y !== data.y\r\n              ) {\r\n                if (data) {\r\n                  this.setMountedState({ scaleBarData: data });\r\n                }\r\n              }\r\n            }}\r\n          />\r\n        )}\r\n       \r\n        {this.state.initialized && showTimeBar && (\r\n          <TimeLineTool\r\n            key={fileId + \"TimeLineTool\"}\r\n            selectedLayer={this.props.selectedLayer}\r\n            structures={this.props.structures}\r\n            frameArray={this.props.frameArrayDict[this.props.fileId]}\r\n            time={this.state.t}\r\n            playing={this.state.playing}\r\n            onPlayPause={this.onPlayPause}\r\n            onSeek={this.onSeek}\r\n            onChangeT={this.onChangeT}\r\n            ome={this.props.ome}\r\n            sr={this.state.sr}\r\n            onChangeSr={this.onChangeSr}\r\n            playDirection={this.state.playDirection}\r\n            onStep={this.onStep}\r\n            resizeTimeLine={this.props.resizeTimeLine}\r\n            timeLineHeight={this.props.timeLineHeight}\r\n          />\r\n        )}\r\n        {this.state.initialized &&\r\n          showZStackBar &&\r\n          this.props.ome.sizeZ > 1 && (\r\n            <ZStackBar\r\n              key={fileId + \"ZStackBar\"}\r\n              pointerEvents={\r\n                !(\r\n                  this.canvas.style.cursor !== \"default\" ||\r\n                  this.props.drawLayer.regionRois.length > 0\r\n                )\r\n              }\r\n              z={this.state.z}\r\n              minZ={this.state.minZ}\r\n              maxZ={this.state.maxZ}\r\n              playing={this.state.playingZ}\r\n              onPlayPause={this.onPlayPauseZ}\r\n              zsr={this.state.zsr}\r\n              onChangeZ={this.onChangeZ}\r\n              onChangeZValue={this.onChangeZValue}\r\n              onChangeZSr={this.onChangeZSr}\r\n              playDirection={this.state.playDirectionZ}\r\n              ome={this.props.ome}\r\n              onStep={this.onStepZ}\r\n            />\r\n          )}\r\n        {this.state.initialized && showImageInfo && (\r\n          <ImageInfo ome={this.props.ome} />\r\n        )}\r\n        {this.state.initialized && showResultTable && (\r\n          <ResultTable\r\n            structures={this.props.structures}\r\n            selectedLayer={this.props.selectedLayer}\r\n            roiLayers={this.props.roiLayers}\r\n            allRoiLayers={this.props.allRoiLayers}\r\n            fileId={this.props.fileId}\r\n          />\r\n        )}\r\n\r\n        {showFileNavButtons && (\r\n          <React.Fragment>\r\n            <div className={classes.fileNavLeftBtn}>\r\n              <Tooltip\r\n                disableInteractive\r\n                placement=\"top\"\r\n                followCursor\r\n                title=\"Open previous file [Ctrl] + [<=]\"\r\n              >\r\n                <span>\r\n                  <IconButton\r\n                    disabled={\r\n                      this.props.fileId === this.props.project.files[0].id\r\n                    }\r\n                    onClick={() => {\r\n                      this.props.openPrevFile();\r\n                    }}\r\n                  >\r\n                    <KeyboardArrowLeftIcon />\r\n                  </IconButton>\r\n                </span>\r\n              </Tooltip>\r\n            </div>\r\n\r\n            <div className={classes.fileNavRightBtn}>\r\n              <Tooltip\r\n                disableInteractive\r\n                placement=\"top\"\r\n                followCursor\r\n                title=\"Open next file [Ctrl] + [=>]\"\r\n              >\r\n                <span>\r\n                  <IconButton\r\n                    disabled={\r\n                      this.props.fileId ===\r\n                      this.props.project.files[\r\n                        this.props.project.files.length - 1\r\n                      ].id\r\n                    }\r\n                    onClick={this.props.openNextFile}\r\n                  >\r\n                    <KeyboardArrowRightIcon />\r\n                  </IconButton>\r\n                </span>\r\n              </Tooltip>\r\n            </div>\r\n          </React.Fragment>\r\n        )}\r\n      </div>\r\n    );\r\n  };\r\n}\r\n\r\n// define the component's interface\r\nRenderer.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  projectContext: PropTypes.object,\r\n  project: PropTypes.object,\r\n  tools: PropTypes.array,\r\n  allRoiLayers: PropTypes.object,\r\n  viewerConfig: PropTypes.object,\r\n  structures: PropTypes.array,\r\n  rightSpace: PropTypes.number,\r\n  updateProject: PropTypes.func,\r\n  setSelectedRoi: PropTypes.func,\r\n  fsChain: PropTypes.func,\r\n  onChangeChain: PropTypes.func,\r\n  onSelectFile: PropTypes.func,\r\n  // to access the componenents ref through withStyles\r\n  componentRef: PropTypes.func,\r\n  // meta data stuff\r\n  id: PropTypes.string,\r\n  ome: PropTypes.object,\r\n  histogramConfig: PropTypes.object,\r\n  // roi draing\r\n  rois: PropTypes.array,\r\n  onChangeROIs: PropTypes.func,\r\n  // tool stuff\r\n  activeTool: PropTypes.string,\r\n  // view layout stuff\r\n  showGallery: PropTypes.bool,\r\n  showZStackBar: PropTypes.bool,\r\n  showTimeBar: PropTypes.bool,\r\n  resultTabActive: PropTypes.func,\r\n  // roiLayers\r\n  roiLayers: PropTypes.array,\r\n  drawLayer: PropTypes.object,\r\n  commentLayer: PropTypes.object,\r\n  landmarkLayers: PropTypes.object,\r\n  landmarkLayer: PropTypes.object,\r\n  selectedLayer: PropTypes.number,\r\n  opacity: PropTypes.number,\r\n  // from withTiles\r\n  tiles: PropTypes.object,\r\n  dimensionsUpdated: PropTypes.bool,\r\n  updateGlobalZ: PropTypes.func,\r\n  updateGlobalT: PropTypes.func,\r\n  //splitscreen stuff\r\n  splitscreenCount: PropTypes.number,\r\n  splitscreenFileIds: PropTypes.array,\r\n  isChained: PropTypes.bool,\r\n  chainListFileIds: PropTypes.object,\r\n  isActive: PropTypes.bool,\r\n  canvasId: PropTypes.string,\r\n  rendererDict: PropTypes.object,\r\n  fileId: PropTypes.string,\r\n  projectId: PropTypes.string,\r\n  activeFileId: PropTypes.string,\r\n  displayTimeBar: PropTypes.bool,\r\n  displayZStackBar: PropTypes.bool,\r\n  loadedAnnotationsCounter: PropTypes.number,\r\n  frameArrayDict: PropTypes.object,\r\n  resultTab: PropTypes.object,\r\n  persistentStorage: PropTypes.object,\r\n  showFullscreen: PropTypes.bool,\r\n  setChangingFile: PropTypes.func,\r\n  //not ordered\r\n  splitscreenIdx: PropTypes.number,\r\n  changeHiConfig: PropTypes.func,\r\n  onChangeTool: PropTypes.func,\r\n  zoomROI: PropTypes.bool,\r\n  zoomLeft: PropTypes.number,\r\n  zoomRight: PropTypes.number,\r\n  zoomTop: PropTypes.number,\r\n  zoomBottom: PropTypes.number,\r\n  tzoomROI1: PropTypes.func,\r\n  changingFile: PropTypes.bool,\r\n  showGridLabels: PropTypes.bool,\r\n  showMarks: PropTypes.bool,\r\n  selectedROI: PropTypes.object,\r\n  showWindowTool: PropTypes.bool,\r\n  windowToolRef: PropTypes.object,\r\n  timeLineHeight: PropTypes.number,\r\n  resizeTimeLine: PropTypes.func,\r\n  spinloader: PropTypes.object,\r\n  openNextFile: PropTypes.func,\r\n  openPrevFile: PropTypes.func,\r\n  updateVisibleROIDebounced: PropTypes.func.isRequired,\r\n};\r\n\r\nexport default withPersistentStorage(\r\n  withTiles(withResultTab(withSpinloader(withStyles(styles)(Renderer))))\r\n);\r\n","// Copyright HS Analysis GmbH, 2021\r\n// Author: Viktor Eberhardt, Timo Koch\r\n\r\n// Framework imports\r\nimport React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\n// Material UI imports\r\nimport Checkbox from \"@mui/material/Checkbox\";\r\nimport ExpandMoreIcon from \"@mui/icons-material/ExpandMore\";\r\nimport FormControlLabel from \"@mui/material/FormControlLabel\";\r\nimport MuiAccordion from \"@mui/material/Accordion\";\r\nimport MuiAccordionDetails from \"@mui/material/AccordionDetails\";\r\nimport MuiAccordionSummary from \"@mui/material/AccordionSummary\";\r\nimport Table from \"@mui/material/Table\";\r\nimport TableBody from \"@mui/material/TableBody\";\r\nimport TableCell from \"@mui/material/TableCell\";\r\nimport TableRow from \"@mui/material/TableRow\";\r\nimport Tooltip from \"@mui/material/Tooltip\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n\r\nimport Backend from \"../../../common/utils/Backend\";\r\n// import CircularProgress from \"@mui/material/CircularProgress\";\r\n\r\n// HSA imports\r\nimport { withAllViewerContexts } from \"../../contexts/AllViewerContexts\";\r\nimport { withPersistentStorage } from \"../../contexts/PersistentStorageContext\";\r\n\r\nconst Accordion = withStyles({\r\n  root: {\r\n    border: \"1px solid rgba(0, 0, 0, .125)\",\r\n    boxShadow: \"none\",\r\n    \"&:not(:last-child)\": {\r\n      borderBottom: 0,\r\n    },\r\n    \"&:before\": {\r\n      display: \"none\",\r\n    },\r\n    \"&$expanded\": {\r\n      margin: \"auto\",\r\n    },\r\n  },\r\n  expanded: {},\r\n})(MuiAccordion);\r\n\r\nconst AccordionSummary = withStyles({\r\n  root: {\r\n    backgroundColor: \"rgba(0, 0, 0, .03)\",\r\n    borderBottom: \"1px solid rgba(0, 0, 0, .125)\",\r\n    marginBottom: -1,\r\n    minHeight: 56,\r\n    \"&$expanded\": {\r\n      minHeight: 56,\r\n    },\r\n  },\r\n  content: {\r\n    \"&$expanded\": {\r\n      margin: \"12px 0\",\r\n    },\r\n  },\r\n  expanded: {},\r\n})(MuiAccordionSummary);\r\n\r\nconst AccordionDetails = withStyles((theme) => ({\r\n  root: {\r\n    padding: theme.spacing(2),\r\n  },\r\n}))(MuiAccordionDetails);\r\n\r\nconst styles = {\r\n  root: {\r\n    width: \"100%\",\r\n  },\r\n};\r\nlet usableModels = {};\r\n\r\nclass SideBarTabAISelectByModel extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n    this.selectedModels = [];\r\n    this.aiCockpitLoaded = false;\r\n    this.state = {\r\n      expandedIdx: -1, //nothing expanded on mount\r\n      export: false,\r\n      delete: false,\r\n      init: false,\r\n    };\r\n  }\r\n\r\n  componentDidUpdate = () => {\r\n    if (this.props.formDataAICockpit && !this.aiCockpitLoaded) {\r\n      this.aiCockpitLoaded = true;\r\n      this.init();\r\n    }\r\n\r\n    this.updateModelCheckboxes();\r\n  };\r\n\r\n  modelIsSelected = (modelName) => {\r\n    return this.selectedModels.indexOf(modelName) > -1;\r\n  };\r\n\r\n  /**\r\n   * Evaluate all AI model checkboxes, if they should be checked or not.\r\n   * Models for a structure with an appointed model should be deactivated.\r\n   * Needed values are stored in props.\r\n   */\r\n  updateModelCheckboxes = () => {\r\n    const { formDataAICockpit } = this.props;\r\n    let checkboxesChanged = false;\r\n    if (formDataAICockpit) {\r\n      // Iterate over all present models\r\n      for (const [key, model] of Object.entries(usableModels)) {\r\n        let modelIsDisabled = false;\r\n        let modelIsChecked = false;\r\n\r\n        // Iterate over all possible structures of each model\r\n        for (let usableStructure of model.usableStructures) {\r\n          // Get current state of currently viewed possible structure of current model\r\n          let selectedModel =\r\n            formDataAICockpit[usableStructure.id].selectedModel;\r\n          let structureIsChecked = usableStructure.isChecked;\r\n          let structureIsDisabled = usableStructure.isDisabled;\r\n\r\n          // A model has already been assigned to the current structure\r\n          if (selectedModel !== null) {\r\n            structureIsChecked = true;\r\n\r\n            // It is the same as the current model\r\n            if (key === selectedModel) {\r\n              modelIsChecked = true;\r\n              structureIsDisabled = false;\r\n            }\r\n            // It is a different model\r\n            else {\r\n              structureIsDisabled = true;\r\n              modelIsDisabled = true;\r\n            }\r\n          }\r\n          // No model selected for this structure\r\n          else {\r\n            structureIsChecked = false;\r\n            structureIsDisabled = false;\r\n          }\r\n\r\n          // Update usable structure attibutes\r\n          if (\r\n            structureIsChecked !== usableStructure.isChecked ||\r\n            structureIsDisabled !== usableStructure.isDisabled\r\n          ) {\r\n            usableStructure.isDisabled = structureIsDisabled;\r\n            usableStructure.isChecked = structureIsChecked;\r\n            checkboxesChanged = true;\r\n          }\r\n        }\r\n\r\n        // Update model attributes\r\n        if (\r\n          modelIsDisabled !== model.isDisabled ||\r\n          modelIsChecked !== model.isChecked\r\n        ) {\r\n          model.isDisabled = modelIsDisabled;\r\n          model.isChecked = modelIsChecked;\r\n          checkboxesChanged = true;\r\n        }\r\n      }\r\n      if (checkboxesChanged) {\r\n        this.updateSelectedTool();\r\n      }\r\n    }\r\n  };\r\n\r\n  /**\r\n   * Runs all checks when component initializes or updates.\r\n   */\r\n  init = () => {\r\n    const { structures, formDataAICockpit, availableModels } = this.props;\r\n    usableModels = {};\r\n\r\n    for (let row of Object.values(formDataAICockpit)) {\r\n      // Filter models per structure\r\n      let availableModelsForStructure =\r\n        this.props.getAvailableModelsForStructure(\r\n          availableModels,\r\n          row.fullStructure\r\n        );\r\n\r\n      // Extract necessary information from structure\r\n      let usableStructure = {\r\n        id: row.fullStructure.id,\r\n        structurePath: row.fullStructure.label,\r\n        name: row.fullStructure.label,\r\n        isChecked: false,\r\n        isDisabled: false,\r\n      };\r\n\r\n      // Find the topmost parent and build the structure path name as follows:\r\n      // Top - Intermediate - Intermediate - Target Structure\r\n      let parentId = row.fullStructure.parentId;\r\n      let findParentId = (structure) => structure.id === parentId;\r\n      while (parentId > 0) {\r\n        let parentStructure = structures.find(findParentId);\r\n        if (parentStructure) {\r\n          usableStructure.structurePath =\r\n            parentStructure.label + \" - \" + usableStructure.structurePath;\r\n\r\n          parentId = parentStructure.parentId;\r\n        } else {\r\n          parentId = -1;\r\n        }\r\n      }\r\n\r\n      if (availableModelsForStructure) {\r\n        // Ensure structures are assigned to models\r\n        for (let model of availableModelsForStructure) {\r\n          // if (model.versions.length === 0) continue;\r\n          let usableStructurClone = JSON.parse(JSON.stringify(usableStructure));\r\n\r\n          // In case of missing model, insert model into usable models\r\n          if (!(model.settings.meta_data.name in usableModels)) {\r\n            // Create new usable model from model\r\n            usableModels[model.settings.meta_data.name] = {\r\n              label: model.settings.meta_data.name,\r\n              name: model.settings.meta_data.name,\r\n              versions: [model],\r\n              usableStructures: [usableStructurClone],\r\n              isChecked: false,\r\n              isDisabled: false,\r\n            };\r\n          }\r\n\r\n          // In case of normal model, simply add model\r\n          else {\r\n            usableModels[model.settings.meta_data.name].usableStructures.push(\r\n              usableStructurClone\r\n            );\r\n          }\r\n        }\r\n      }\r\n    }\r\n\r\n    this.updateModelCheckboxes();\r\n    this.setState({ init: true });\r\n  };\r\n\r\n  componentDidMount = () => {\r\n    if (this.props.formDataAICockpit && !this.aiCockpitLoaded) {\r\n      this.aiCockpitLoaded = true;\r\n      this.init();\r\n    }\r\n  };\r\n\r\n  updateSelectedTool = () => {\r\n    this.updatePersistentDefaultModels(usableModels);\r\n    // No model is selected -> exit\r\n    if (!(this.state.expandedIdx >= 0)) {\r\n      this.props.onChangeTool(\"none\");\r\n      return;\r\n    }\r\n\r\n    // Only modify the currently selected model\r\n    // Except models with \"Hyper\" and/or \"Efficiant\" in their name -> exit\r\n    let selectedModel = Object.values(usableModels)[this.state.expandedIdx];\r\n    if (\r\n      !selectedModel.isChecked ||\r\n      selectedModel.name.includes(\"Hyper\") ||\r\n      selectedModel.name.includes(\"Efficient\")\r\n    ) {\r\n      if (selectedModel.versions.length === 0) {\r\n        this.props.onChangeTool(\"none\");\r\n        return;\r\n      }\r\n    }\r\n\r\n    for (let structure of selectedModel.usableStructures) {\r\n      // Ensure that each structure only has 1 model assigned.\r\n      if (structure.isDisabled || !structure.isChecked) {\r\n        continue;\r\n      }\r\n\r\n      // Assign checked model to its structure.\r\n      this.props.setAiUsedStructures(\r\n        {\r\n          structureName: structure.name,\r\n          selectedModel: selectedModel.name,\r\n          selectedVersion: selectedModel.versions[0].label,\r\n          id: structure.id,\r\n        },\r\n        \"add\"\r\n      );\r\n      // No break\r\n    }\r\n\r\n    for (let structure of selectedModel.usableStructures) {\r\n      if (structure.isDisabled || !structure.isChecked) {\r\n        continue;\r\n      }\r\n\r\n      // Find global index of current structure\r\n      let selectedLayerIdx = this.props.structures.findIndex(\r\n        (item) => item.id === structure.id\r\n      );\r\n\r\n      // Check if in viewerless \"FilesGallery\" mode and keep current layer\r\n      const fileClassification =\r\n        this.props.viewerConfig.project.projectStringProperties[\"ViewerType\"] ==\r\n        \"Gallery\";\r\n      if (fileClassification) {\r\n        selectedLayerIdx = this.props.projectContext.selectedLayer; // do not change layer for classification models\r\n      }\r\n\r\n      // Update selected structure and open the AI preview window for it\r\n      if (selectedLayerIdx >= 0) {\r\n        this.props.projectContext.setState(\r\n          { selectedLayer: selectedLayerIdx },\r\n          () => {\r\n            this.props.onChangeTool(\"iam_ai_inference\", {\r\n              selectedModel: selectedModel.name,\r\n              selectedVersion: selectedModel.versions[0].label,\r\n            });\r\n          }\r\n        );\r\n        return;\r\n      }\r\n      break;\r\n    }\r\n\r\n    this.props.onChangeTool(\"none\");\r\n  };\r\n\r\n  updatePersistentDefaultModels = (usableModels) => {\r\n    let currentDefaultModels = [];\r\n    for (let model of Object.values(usableModels)) {\r\n      if (model.isChecked) {\r\n        currentDefaultModels.push(model.name);\r\n      }\r\n    }\r\n    this.props.persistentStorage.saveProjectTypeValue(\r\n      this.props.projectContext.project.type,\r\n      \"defaultModels\",\r\n      currentDefaultModels\r\n    );\r\n  };\r\n\r\n  handleExpandingChange = (idx) => {\r\n    let expandedIdx = this.state.expandedIdx === idx ? -1 : idx;\r\n    this.setState({ expandedIdx }, () => this.updateSelectedTool());\r\n  };\r\n\r\n  onExportClick = (modelName, version) => {\r\n    this.setState({ export: true });\r\n    var aiModel = {\r\n      Name: modelName,\r\n      WeightsName: version,\r\n    };\r\n    Backend.exportAIModel(JSON.stringify(aiModel), (result) => {\r\n      console.log(\"Success\", result);\r\n      this.setState({ export: false });\r\n    });\r\n  };\r\n\r\n  onDeleteClick = (modelName, version) => {\r\n    window.openResponseDialog(\"Delete model forever?\", (response) => {\r\n      if (response) {\r\n        this.setState({ delete: true });\r\n        var aiModel = {\r\n          Name: modelName,\r\n          WeightsName: version,\r\n        };\r\n        Backend.deleteAIModel(JSON.stringify(aiModel), (result) => {\r\n          this.props.initAIFormData(false);\r\n          this.setState({ delete: false });\r\n          if (result.successful) {\r\n            window.showSuccessSnackbar(result.information);\r\n          } else {\r\n            window.showErrorSnackbar(result.information);\r\n          }\r\n        });\r\n      }\r\n    });\r\n  };\r\n\r\n  // toggle model and uncheck all structures or check best fit structures\r\n  toggleModel = (model) => {\r\n    const usableStructures = usableModels[model.name].usableStructures;\r\n    if (model.isChecked) {\r\n      this.props.setAiUsedStructures(null, \"remove_all\");\r\n      usableStructures.forEach((usableStructure) => {\r\n        if (usableStructure.isChecked && !usableStructure.isDisabled) {\r\n          this.props.handleChangeModel(null, usableStructure.id);\r\n        }\r\n      });\r\n    } else {\r\n      if (model.structure_indices) {\r\n        const structures = this.props.structures;\r\n        usableStructures.forEach((usableStructure) => {\r\n          for (let idx of model.structure_indices) {\r\n            if (\r\n              idx < structures.length &&\r\n              structures[idx].label === usableStructure.name\r\n            ) {\r\n              this.props.handleChangeModel(model.name, usableStructure.id);\r\n              break;\r\n            }\r\n          }\r\n        });\r\n      } else if (model.structure) {\r\n        let structureNameArray = model.structure.split(\",\");\r\n        for (let structureName of structureNameArray) {\r\n          for (let usableStructure of usableStructures) {\r\n            if (!usableStructure.isChecked) {\r\n              if (usableStructure.name === structureName) {\r\n                this.props.handleChangeModel(model.name, usableStructure.id);\r\n                break;\r\n              }\r\n            }\r\n          }\r\n        }\r\n      } else {\r\n        this.props.handleChangeModel(model.name, usableStructures[0].id);\r\n      }\r\n    }\r\n  };\r\n\r\n  handleModelChange = (model, usableStructure) => {\r\n    this.props.handleChangeModel(\r\n      usableStructure.isChecked ? null : model.name,\r\n      usableStructure.id\r\n    );\r\n  };\r\n\r\n  render() {\r\n    const { expandedIdx } = this.state;\r\n    // const { classes, formDataAICockpit } = this.props;\r\n    const { classes } = this.props;\r\n    // const { groupPermissions, userPermissions } = this.props.projectContext;\r\n    const { groupPermissions } = this.props.projectContext;\r\n\r\n    return (\r\n      <>\r\n        <div className={classes.root}>\r\n          {Object.values(usableModels).map((model, idx) => {\r\n            return (\r\n              <Accordion\r\n                key={idx}\r\n                expanded={expandedIdx === idx}\r\n                onChange={() => this.handleExpandingChange(idx)}\r\n              >\r\n                <AccordionSummary\r\n                  expandIcon={<ExpandMoreIcon />}\r\n                  aria-label=\"Expand\"\r\n                >\r\n                  <FormControlLabel\r\n                    aria-label=\"Acknowledge\"\r\n                    onClick={(event) => event.stopPropagation()}\r\n                    onFocus={(event) => event.stopPropagation()}\r\n                    control={\r\n                      <Tooltip\r\n                        disableInteractive\r\n                        title={\r\n                          groupPermissions.canEditModel\r\n                            ? \"depending on Structure selection\"\r\n                            : \"No Permission!\"\r\n                        }\r\n                      >\r\n                        <span>\r\n                          <Checkbox\r\n                            checked={model.isChecked}\r\n                            disabled={\r\n                              !model.isChecked &&\r\n                              model.isDisabled &&\r\n                              !groupPermissions.canEditModel\r\n                            }\r\n                            onChange={() => {\r\n                              this.toggleModel(model);\r\n                              this.updateModelCheckboxes();\r\n                            }}\r\n                          />\r\n                        </span>\r\n                      </Tooltip>\r\n                    }\r\n                    label={model.label}\r\n                  />\r\n                </AccordionSummary>\r\n                <AccordionDetails>\r\n                  {model.versions.length > 0 && expandedIdx === idx && (\r\n                    <div style={{ width: \"100%\" }}>\r\n                      <Table>\r\n                        <TableBody>\r\n                          <TableRow>\r\n                            <TableCell>Name:</TableCell>\r\n                            <TableCell>{model.label}</TableCell>\r\n                          </TableRow>\r\n                          <TableRow>\r\n                            <TableCell>Structures:</TableCell>\r\n                            <TableCell>\r\n                              {model.usableStructures.map(\r\n                                (usableStructure, structureIdx) => (\r\n                                  <div key={structureIdx}>\r\n                                    <FormControlLabel\r\n                                      control={\r\n                                        <Checkbox\r\n                                          name=\"CheckboxStructure\"\r\n                                          checked={usableStructure.isChecked}\r\n                                          disabled={\r\n                                            usableStructure.isDisabled &&\r\n                                            !groupPermissions.canEditModel\r\n                                          }\r\n                                          onChange={() => {\r\n                                            if (\r\n                                              model.structure_indices &&\r\n                                              model.structure_indices.length ==\r\n                                                model.usableStructures.length\r\n                                            ) {\r\n                                              for (let struct of model.usableStructures) {\r\n                                                this.handleModelChange(\r\n                                                  model,\r\n                                                  struct\r\n                                                );\r\n                                              }\r\n                                            } else {\r\n                                              this.handleModelChange(\r\n                                                model,\r\n                                                usableStructure\r\n                                              );\r\n                                            }\r\n\r\n                                            this.updateModelCheckboxes();\r\n                                          }}\r\n                                        />\r\n                                      }\r\n                                      label={usableStructure.structurePath}\r\n                                    />\r\n                                  </div>\r\n                                )\r\n                              )}\r\n                            </TableCell>\r\n                          </TableRow>\r\n                        </TableBody>\r\n                      </Table>\r\n                    </div>\r\n                  )}\r\n                </AccordionDetails>\r\n              </Accordion>\r\n            );\r\n          })}\r\n        </div>\r\n      </>\r\n    );\r\n  }\r\n}\r\n\r\n// define the component's interface\r\nSideBarTabAISelectByModel.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  availableModels: PropTypes.array,\r\n  formDataAICockpit: PropTypes.object,\r\n  structures: PropTypes.array,\r\n  getAvailableModelsForStructure: PropTypes.func,\r\n  handleChangeModel: PropTypes.func,\r\n  handleChangeVersion: PropTypes.func,\r\n  onChangeTool: PropTypes.func,\r\n  projectContext: PropTypes.object,\r\n  initAIFormData: PropTypes.func,\r\n  setAiUsedStructures: PropTypes.func,\r\n  viewerConfig: PropTypes.object,\r\n  persistentStorage: PropTypes.object,\r\n};\r\n\r\nexport default withAllViewerContexts(\r\n  withPersistentStorage(withStyles(styles)(SideBarTabAISelectByModel))\r\n);\r\n","// Copyright HS Analysis GmbH, 2019\r\n// Author: Viktor Eberhardt, Timo Koch\r\n\r\n// Framework imports\r\nimport React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\n// Material UI imports\r\nimport ArrowDropDown from \"@mui/icons-material/ArrowDropDown\";\r\nimport ArrowDropUp from \"@mui/icons-material/ArrowDropUp\";\r\nimport CircularProgress from \"@mui/material/CircularProgress\";\r\nimport CloudDownload from \"@mui/icons-material/CloudDownload\";\r\nimport ExpandMoreIcon from \"@mui/icons-material/ExpandMore\";\r\nimport IconButton from \"@mui/material/IconButton\";\r\nimport MenuItem from \"@mui/material/MenuItem\";\r\nimport MuiAccordion from \"@mui/material/Accordion\";\r\nimport MuiAccordionDetails from \"@mui/material/AccordionDetails\";\r\nimport MuiAccordionSummary from \"@mui/material/AccordionSummary\";\r\nimport Paper from \"@mui/material/Paper\";\r\nimport PlayArrow from \"@mui/icons-material/PlayArrow\";\r\nimport PublishIcon from \"@mui/icons-material/Publish\";\r\nimport Refresh from \"@mui/icons-material/Refresh\";\r\nimport Remove from \"@mui/icons-material/Remove\";\r\nimport Select from \"@mui/material/Select\";\r\nimport Tab from \"@mui/material/Tab\";\r\nimport Table from \"@mui/material/Table\";\r\nimport TableBody from \"@mui/material/TableBody\";\r\nimport TableCell from \"@mui/material/TableCell\";\r\nimport TableContainer from \"@mui/material/TableContainer\";\r\nimport TableHead from \"@mui/material/TableHead\";\r\nimport TableRow from \"@mui/material/TableRow\";\r\nimport Tabs from \"@mui/material/Tabs\";\r\nimport Tooltip from \"@mui/material/Tooltip\";\r\nimport Typography from \"@mui/material/Typography\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n\r\n// HSA imports\r\nimport { withAllViewerContexts } from \"../../../viewer/contexts/AllViewerContexts\";\r\nimport Backend from \"../../../common/utils/Backend\";\r\nimport SideBarTabAISelectByModel from \"./SideBarTabAISelectByModel\";\r\nimport AiTrainingTab from \"../../../audioViewer/sidebar/AiTrainingTab\";\r\nimport Structure from \"../../../common/components/Structure\";\r\n\r\nconst Accordion = withStyles({\r\n  root: {\r\n    border: \"1px solid rgba(0, 0, 0, .125)\",\r\n    boxShadow: \"none\",\r\n    \"&:not(:last-child)\": {\r\n      borderBottom: 0,\r\n    },\r\n    \"&:before\": {\r\n      display: \"none\",\r\n    },\r\n    \"&$expanded\": {\r\n      margin: \"auto\",\r\n    },\r\n  },\r\n  expanded: {},\r\n})(MuiAccordion);\r\n\r\nconst AccordionSummary = withStyles({\r\n  root: {\r\n    backgroundColor: \"rgba(0, 0, 0, .03)\",\r\n    borderBottom: \"1px solid rgba(0, 0, 0, .125)\",\r\n    marginBottom: -1,\r\n    minHeight: 56,\r\n    \"&$expanded\": {\r\n      minHeight: 56,\r\n    },\r\n  },\r\n  content: {\r\n    \"&$expanded\": {\r\n      margin: \"12px 0\",\r\n    },\r\n  },\r\n  expanded: {},\r\n})(MuiAccordionSummary);\r\n\r\nconst AccordionDetails = withStyles((theme) => ({\r\n  root: {\r\n    padding: theme.spacing(2),\r\n  },\r\n}))(MuiAccordionDetails);\r\n\r\nconst styles = {\r\n  root: {\r\n    width: \"100%\",\r\n    height: \"100%\",\r\n    display: \"grid\",\r\n    gridTemplateRows: \"auto 1fr\",\r\n    overflow: \"hidden\",\r\n  },\r\n  tableContainer: {\r\n    width: \"100%\",\r\n    boxShadow: \"none\",\r\n  },\r\n  table: {\r\n    width: \"100%\",\r\n  },\r\n  flexRowRemainingHeight: {\r\n    flex: \"1 1 auto\",\r\n    overflowY: \"auto\",\r\n  },\r\n  spinnerContainer: {\r\n    width: \"100%\",\r\n    height: \"100%\",\r\n    padding: \"20px\",\r\n    textAlign: \"center\",\r\n  },\r\n  tab: {\r\n    minWidth: \"100px\",\r\n    minHeight: \"25px\",\r\n    fontWeight: \"bold\",\r\n  },\r\n  tabContainer: {\r\n    height: \"100%\",\r\n    display: \"grid\",\r\n    gridTemplateRows: \"auto 1fr\",\r\n  },\r\n  modelSelectionContainer: {\r\n    position: \"relative\",\r\n  },\r\n  getOnlineModelsContainer: {\r\n    textAlign: \"right\",\r\n  },\r\n  accordionContainer: {\r\n    height: \"100%\",\r\n    overflow: \"auto\",\r\n  },\r\n};\r\n\r\nclass SideBarTabAI extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n    this.state = {\r\n      activeTab: 0,\r\n      online: true,\r\n      isImporting: false,\r\n    };\r\n    try {\r\n      this.state.online = props.viewerConfig.project.projectProperties.Online;\r\n    } catch {\r\n      console.log(\r\n        \"Error: 'online' could not be read in Project Module config!\"\r\n      );\r\n    }\r\n    this.initModelCounter = -1;\r\n    this.convertedStructures = this.convertStructures(this.props.structures);\r\n  }\r\n\r\n  componentDidMount() {\r\n    this.props.initAIFormData(false);\r\n  }\r\n\r\n  convertStructures = (structures) => {\r\n    let convertedStructures = [];\r\n    structures.forEach((structure) => {\r\n      convertedStructures.push(\r\n        new Structure(\r\n          structure.id,\r\n          structure.label,\r\n          !structure.classificationSubtype,\r\n          structure.color,\r\n          structure.dynamic,\r\n          structure.parentId > 0 ? structure.parentId : null,\r\n          0, // TODO: sameLevelRank?\r\n          structure.isUnfolded,\r\n          structure.visible,\r\n          structure.hasChild,\r\n          structure.subtypeLevel,\r\n          1, // TODO: get number of annotations from roilayers\r\n          true,\r\n          false,\r\n          null,\r\n          null\r\n        )\r\n      );\r\n    });\r\n\r\n    return convertedStructures;\r\n  };\r\n\r\n  setFormDataAICockpit = (formDataAICockpit) => {\r\n    this.props.setAIFormData(formDataAICockpit);\r\n  };\r\n\r\n  checkForAvailableIAMSubtype = (structure) => {\r\n    let childs = this.findChilds(structure);\r\n    for (let i = 1; i < childs.length; i++) {\r\n      if (childs[i].tools.length > 0) return true;\r\n    }\r\n    return false;\r\n  };\r\n\r\n  findChilds = (subType) => {\r\n    const { structures } = this.props;\r\n\r\n    return structures.filter(\r\n      (element) =>\r\n        element.subtypeLevel === subType.subtypeLevel + 1 &&\r\n        element.parentId === subType.id\r\n    );\r\n  };\r\n\r\n  findClassificationSubtypes = (subType) => {\r\n    const { structures } = this.props;\r\n\r\n    return structures.filter(\r\n      (element) =>\r\n        element.subtypeLevel === subType.subtypeLevel + 1 &&\r\n        element.parentId === subType.id &&\r\n        element.classificationSubtype\r\n    );\r\n  };\r\n\r\n  getParentIndex = (structure) => {\r\n    let parentIndex = this.props.structures.findIndex(\r\n      (element) => element.id === structure.parentId\r\n    );\r\n    return parentIndex;\r\n  };\r\n\r\n  findAllSubtypes = (str) => {\r\n    let childs = this.findChilds(str);\r\n    let allChilds = [];\r\n\r\n    while (childs.length !== 0) {\r\n      childs = childs.concat(this.findChilds(childs[0]));\r\n      if (!allChilds.includes(childs[0])) {\r\n        allChilds.push(childs[0]);\r\n      }\r\n      childs.shift();\r\n    }\r\n\r\n    return allChilds;\r\n  };\r\n\r\n  hideSubtypes = (subType, lv) => {\r\n    if (subType.hasChild) {\r\n      let childs = this.findChilds(subType);\r\n      for (let i = 0; i < childs.length; i++) {\r\n        this.hideSubtypes(childs[i], lv);\r\n      }\r\n    }\r\n    // make visibility like parent\r\n    if (subType.classificationSubtype && subType.subtypeLevel > lv) {\r\n      let idx = this.getParentIndex(subType);\r\n      subType.visible = this.props.structures[idx].visible;\r\n    }\r\n    subType.showSubtypes = false;\r\n    subType.isUnfolded = false;\r\n    this.props.projectContext.forceUpdate();\r\n  };\r\n\r\n  showSubtypes = (subType) => {\r\n    const { structures } = this.props;\r\n    for (let structure of structures) {\r\n      if (structure.parentId === subType.id) {\r\n        structure.isUnfolded = true;\r\n      }\r\n    }\r\n    this.props.projectContext.setState({ structures });\r\n  };\r\n\r\n  /**\r\n   * Assigns a given model to a given structure.\r\n   * @param {string} selModel Name of model\r\n   * @param {int} structureId Structure id\r\n   */\r\n  handleChangeModel = (selModel, structureId) => {\r\n    const formDataAICockpit = this.props.formDataAICockpit;\r\n\r\n    if (selModel === \"null\") {\r\n      selModel = null;\r\n    }\r\n\r\n    // Assign model to structure\r\n    formDataAICockpit[structureId].selectedModel = selModel;\r\n\r\n    // Save changes\r\n    this.props.setAIFormData(formDataAICockpit);\r\n  };\r\n\r\n  handleChangeVersion = (event, structure, selectedModel) => {\r\n    if (selectedModel) {\r\n      const formDataAICockpit = this.props.formDataAICockpit;\r\n      const modelName = formDataAICockpit[structure].selectedModel;\r\n      const versionName = event.target.value;\r\n      formDataAICockpit[structure].models[selectedModel].selectedVersion =\r\n        versionName;\r\n\r\n      if (modelName !== null) {\r\n        for (const key of Object.keys(formDataAICockpit)) {\r\n          if (formDataAICockpit[key].selectedModel === modelName) {\r\n            formDataAICockpit[key].selectedVersion = versionName;\r\n            formDataAICockpit[key].models[selectedModel].selectedVersion =\r\n              versionName;\r\n          }\r\n        }\r\n      }\r\n      const params = {\r\n        selectedModel: selectedModel,\r\n        selectedVersion: event.target.value,\r\n      };\r\n      this.props.onChangeTool(\"iam_ai_inference\", params);\r\n      this.props.setAIFormData(formDataAICockpit);\r\n    }\r\n  };\r\n\r\n  handleImportModelSelection = (e) => {\r\n    let files = e.target.files;\r\n    this.setState({\r\n      isImporting: true,\r\n    });\r\n    Backend.importAIModels(files[0], (result) => {\r\n      if (!result.success) {\r\n        window.showErrorSnackbar(\"Import failed\");\r\n      } else if (result.fileIsNew) {\r\n        this.props.initAIFormData(false);\r\n        window.showSuccessSnackbar(\"Successfully imported model\");\r\n      } else {\r\n        window.showWarningSnackbar(\"Model already exists\");\r\n      }\r\n      this.setState({\r\n        isImporting: false,\r\n      });\r\n    });\r\n  };\r\n\r\n  handleChangeActiveTab = (event, value) => {\r\n    this.setState({ activeTab: value });\r\n  };\r\n\r\n  getAvailableModelsForStructure = (availableModels, fullStructure) => {\r\n    if (!availableModels) return null;\r\n    // get models that can be used with given structure\r\n    return availableModels.filter((model) => {\r\n      return model.settings.structures.some((modelStructure) => {\r\n        return modelStructure.label === fullStructure.label;\r\n      });\r\n    });\r\n  };\r\n\r\n  modelIncludesSubtypes = () => {\r\n    // TODO: depending on naming of classification models, check if model has correct subtypes\r\n    // let childs = this.findClassificationSubtypes(parentStructure);\r\n    return true;\r\n  };\r\n\r\n  renderRow = (structure) => {\r\n    const formDataAICockpit = this.props.formDataAICockpit;\r\n    let selectedModel = formDataAICockpit[structure].selectedModel;\r\n    const fullStructure = formDataAICockpit[structure].fullStructure;\r\n    const { structures, availableModels } = this.props;\r\n\r\n    // get available models for structure\r\n    const availableModelsForStructure = this.getAvailableModelsForStructure(\r\n      availableModels,\r\n      fullStructure\r\n    );\r\n    const visibleVersions =\r\n      selectedModel &&\r\n      availableModelsForStructure &&\r\n      availableModelsForStructure.length > 0 &&\r\n      availableModelsForStructure.find(\r\n        (c) => c.settings.meta_data.name === selectedModel\r\n      );\r\n\r\n    let selectedDropDownVersion =\r\n      (selectedModel &&\r\n        formDataAICockpit[structure].models[selectedModel] &&\r\n        formDataAICockpit[structure].models[selectedModel].selectedVersion) ||\r\n      \"\";\r\n\r\n    if (availableModelsForStructure) {\r\n      let modelIndex = availableModelsForStructure.findIndex(\r\n        (item) => item.settings.meta_data.name === selectedModel\r\n      );\r\n      if (modelIndex < 0) {\r\n        selectedModel = \"\";\r\n      }\r\n    }\r\n\r\n    if (visibleVersions) {\r\n      let versionIndex = visibleVersions.versions.findIndex(\r\n        (item) => item.label === selectedDropDownVersion\r\n      );\r\n      if (versionIndex < 0) {\r\n        selectedDropDownVersion = \"\";\r\n      }\r\n    } else {\r\n      selectedDropDownVersion = \"\";\r\n    }\r\n\r\n    // make line below last classification subtype to seperate classification subtypes from substructures\r\n    let lastSubtype = false;\r\n    if (fullStructure.classificationSubtype) {\r\n      let parentStructure = structures.filter(\r\n        (element) => element.id === fullStructure.parentId\r\n      );\r\n      let childs = null;\r\n      if (parentStructure[0]) {\r\n        childs = this.findClassificationSubtypes(parentStructure[0]);\r\n      }\r\n      // if fullStructure is last classification subtype --> draw divider\r\n      if (\r\n        childs[childs.length - 1] &&\r\n        fullStructure.id === childs[childs.length - 1].id\r\n      ) {\r\n        lastSubtype = true;\r\n      }\r\n    }\r\n\r\n    let id = structures.findIndex((element) => element.id === +structure);\r\n\r\n    if (typeof structures[id] !== \"undefined\" && structures[id].isUnfolded) {\r\n      return (\r\n        <TableRow key={structure} style={{ width: \"100%\" }}>\r\n          <TableCell\r\n            align=\"left\"\r\n            component=\"th\"\r\n            scope=\"row\"\r\n            style={{\r\n              paddingBottom: 0,\r\n              paddingTop: 0,\r\n              paddingLeft: (fullStructure.subtypeLevel + 1) * 10,\r\n              borderBottom: lastSubtype\r\n                ? \"1px solid #595959\"\r\n                : \"1px solid #E0E0E0\",\r\n            }}\r\n          >\r\n            {fullStructure.isSubtype && fullStructure.classificationSubtype && (\r\n              <IconButton\r\n                style={{ background: \"none\", padding: \"2px\" }}\r\n                size=\"large\"\r\n              >\r\n                <PlayArrow style={{ fontSize: \"small\" }} />\r\n              </IconButton>\r\n            )}\r\n            {fullStructure.isSubtype && !fullStructure.classificationSubtype && (\r\n              <IconButton\r\n                style={{ background: \"none\", padding: \"2px\" }}\r\n                size=\"large\"\r\n              >\r\n                <Remove style={{ fontSize: \"small\" }} />\r\n              </IconButton>\r\n            )}\r\n\r\n            {fullStructure.label}\r\n          </TableCell>\r\n          {fullStructure.hasChild && (\r\n            <TableCell>\r\n              <IconButton\r\n                onClick={() => {\r\n                  if (fullStructure.showSubtypes === false) {\r\n                    this.showSubtypes(fullStructure);\r\n                    fullStructure.showSubtypes = true;\r\n                  } else {\r\n                    this.hideSubtypes(\r\n                      fullStructure,\r\n                      fullStructure.subtypeLevel\r\n                    );\r\n                    fullStructure.isUnfolded = true;\r\n                  }\r\n                }}\r\n                size=\"large\"\r\n              >\r\n                {fullStructure.showSubtypes ? (\r\n                  <ArrowDropUp />\r\n                ) : (\r\n                  <ArrowDropDown />\r\n                )}\r\n              </IconButton>\r\n            </TableCell>\r\n          )}\r\n          {!fullStructure.hasChild && <TableCell />}\r\n          <TableCell align=\"center\">\r\n            <Select\r\n              name=\"SelectModel\"\r\n              variant=\"standard\"\r\n              value={selectedModel || \"null\"}\r\n              onChange={(event) =>\r\n                this.handleChangeModel(event.target.value, structure)\r\n              }\r\n              disabled={\r\n                !(\r\n                  availableModelsForStructure &&\r\n                  availableModelsForStructure.length > 0\r\n                )\r\n              }\r\n            >\r\n              <MenuItem value=\"null\">\r\n                <em>Select Model ...</em>\r\n              </MenuItem>\r\n              {availableModelsForStructure &&\r\n                availableModelsForStructure.map((model, idx) => {\r\n                  if (typeof structure !== \"undefined\" || structure != null) {\r\n                    return (\r\n                      <MenuItem key={idx} value={model.settings.meta_data.name}>\r\n                        {model.settings.meta_data.name}\r\n                      </MenuItem>\r\n                    );\r\n                  }\r\n                  return null;\r\n                })}\r\n            </Select>\r\n          </TableCell>\r\n          <TableCell align=\"right\">\r\n            <Select\r\n              name=\"SelectVersion\"\r\n              variant=\"standard\"\r\n              value={selectedDropDownVersion}\r\n              onChange={(event) =>\r\n                this.handleChangeVersion(event, structure, selectedModel)\r\n              }\r\n              disabled={!selectedModel}\r\n            >\r\n              {visibleVersions &&\r\n                visibleVersions.versions.map((version, idx) => (\r\n                  <MenuItem key={idx} value={version.label}>\r\n                    {version.label}\r\n                  </MenuItem>\r\n                ))}\r\n            </Select>\r\n          </TableCell>\r\n        </TableRow>\r\n      );\r\n    }\r\n  };\r\n\r\n  render() {\r\n    const { classes, visible, formDataAICockpit } = this.props;\r\n    const { groupPermissions, userPermissions } = this.props.projectContext;\r\n\r\n    if (!visible) return null;\r\n    return (\r\n      <div className={classes.root}>\r\n        <Tabs\r\n          className={classes.tabsContainer}\r\n          style={{ minHeight: \"30px\" }}\r\n          value={this.state.activeTab}\r\n          onChange={this.handleChangeActiveTab}\r\n          indicatorColor=\"primary\"\r\n          textColor=\"primary\"\r\n          variant=\"fullWidth\"\r\n        >\r\n          <Tab className={classes.tab} label=\"model selection\" />\r\n          <Tab\r\n            className={classes.tab}\r\n            disabled={!groupPermissions.canTrainModel}\r\n            label=\"train model\"\r\n          />\r\n        </Tabs>\r\n        {this.state.activeTab === 0 && (\r\n          <div\r\n            style={{ position: \"relative\", height: \"100%\", overflow: \"hidden\" }}\r\n          >\r\n            <div className={classes.getOnlineModelsContainer}>\r\n              {this.state.online && (\r\n                <Tooltip\r\n                  disableInteractive\r\n                  title=\"Load available online AI Models\"\r\n                >\r\n                  <IconButton\r\n                    aria-label=\"Import\"\r\n                    onClick={() => this.props.initAIFormData(true)}\r\n                    size=\"large\"\r\n                  >\r\n                    <CloudDownload />\r\n                  </IconButton>\r\n                </Tooltip>\r\n              )}\r\n              <Tooltip\r\n                disableInteractive\r\n                title=\"Update available offline AI Models\"\r\n              >\r\n                <IconButton\r\n                  aria-label=\"Import\"\r\n                  onClick={() => this.props.initAIFormData(false)}\r\n                  size=\"large\"\r\n                >\r\n                  <Refresh />\r\n                </IconButton>\r\n              </Tooltip>\r\n\r\n              {this.state.isImporting ? (\r\n                <CircularProgress\r\n                  size=\"20px\"\r\n                  thickness={3}\r\n                  style={{\r\n                    marginLeft: \"15px\",\r\n                    marginTop: \"15px\",\r\n                    marginRight: \"15px\",\r\n                  }}\r\n                />\r\n              ) : (\r\n                <Tooltip\r\n                  disableInteractive\r\n                  title={\r\n                    userPermissions.canImportModels\r\n                      ? \"Import AI Model\"\r\n                      : \"No Permission!\"\r\n                  }\r\n                >\r\n                  <span>\r\n                    <IconButton\r\n                      disabled={!userPermissions.canImportModels}\r\n                      onClick={() =>\r\n                        document.getElementById(\"importAIModel\").click()\r\n                      }\r\n                      size=\"large\"\r\n                    >\r\n                      <PublishIcon />\r\n                    </IconButton>\r\n                  </span>\r\n                </Tooltip>\r\n              )}\r\n              <input\r\n                type=\"file\"\r\n                id=\"importAIModel\"\r\n                style={{ position: \"absolute\", top: \"-150px\" }}\r\n                accept=\".modelhsa\"\r\n                onChange={this.handleImportModelSelection}\r\n              />\r\n            </div>\r\n            {this.props.modelsInitialized ? (\r\n              <div className={classes.tabContainer}>\r\n                <div className={classes.accordionContainer}>\r\n                  <Accordion\r\n                    expanded={this.props.showFirstAccordion}\r\n                    onChange={() => this.props.toggleShowFirstAccordion()}\r\n                  >\r\n                    <AccordionSummary\r\n                      expandIcon={<ExpandMoreIcon />}\r\n                      aria-controls=\"panel1d-content\"\r\n                      id=\"panel1d-header\"\r\n                    >\r\n                      <Typography>Select by Model</Typography>\r\n                    </AccordionSummary>\r\n                    <AccordionDetails>\r\n                      {this.props.showFirstAccordion && (\r\n                        <SideBarTabAISelectByModel\r\n                          availableModels={this.props.availableModels}\r\n                          formDataAICockpit={this.props.formDataAICockpit}\r\n                          structures={this.props.structures}\r\n                          handleChangeModel={this.handleChangeModel}\r\n                          handleChangeVersion={this.handleChangeVersion}\r\n                          getAvailableModelsForStructure={\r\n                            this.getAvailableModelsForStructure\r\n                          }\r\n                          onChangeTool={this.props.onChangeTool}\r\n                          initAIFormData={this.props.initAIFormData}\r\n                          setAiUsedStructures={this.props.setAiUsedStructures}\r\n                          viewerConfig={this.props.viewerConfig}\r\n                        />\r\n                      )}\r\n                    </AccordionDetails>\r\n                  </Accordion>\r\n                  <Accordion\r\n                    square\r\n                    expanded={!this.props.showFirstAccordion}\r\n                    onChange={() => this.props.toggleShowFirstAccordion()}\r\n                  >\r\n                    <AccordionSummary\r\n                      expandIcon={<ExpandMoreIcon />}\r\n                      aria-controls=\"panel2d-content\"\r\n                      id=\"panel2d-header\"\r\n                    >\r\n                      <Typography>Select by Structure </Typography>\r\n                    </AccordionSummary>\r\n                    <AccordionDetails>\r\n                      <TableContainer\r\n                        className={classes.tableContainer}\r\n                        component={Paper}\r\n                      >\r\n                        {!this.props.showFirstAccordion && (\r\n                          <Table className={classes.table} size=\"medium\">\r\n                            <TableHead>\r\n                              <TableRow>\r\n                                <TableCell align=\"left\">Structure</TableCell>\r\n                                <TableCell />\r\n                                <TableCell align=\"center\">Model</TableCell>\r\n                                <TableCell align=\"right\">Version</TableCell>\r\n                              </TableRow>\r\n                            </TableHead>\r\n                            <TableBody>\r\n                              {formDataAICockpit &&\r\n                                Object.values(formDataAICockpit)\r\n                                  .sort((a, b) =>\r\n                                    a.structureIndex > b.structureIndex ? 1 : -1\r\n                                  ) // sort because dictionary is sorted by structure index value\r\n                                  .filter((item) => item !== \"null\")\r\n                                  .map((element) =>\r\n                                    this.renderRow(element.fullStructure.id)\r\n                                  )}\r\n                            </TableBody>\r\n                          </Table>\r\n                        )}\r\n                      </TableContainer>\r\n                    </AccordionDetails>\r\n                  </Accordion>\r\n                </div>\r\n              </div>\r\n            ) : (\r\n              <div className={classes.spinnerContainer}>\r\n                <CircularProgress />\r\n              </div>\r\n            )}\r\n          </div>\r\n        )}\r\n        {this.state.activeTab === 1 && (\r\n          <AiTrainingTab\r\n            ome={this.props.ome}\r\n            project={this.props.project}\r\n            structures={this.convertedStructures}\r\n          ></AiTrainingTab>\r\n        )}\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\n// define the component's interface\r\nSideBarTabAI.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  viewerConfig: PropTypes.object,\r\n  structures: PropTypes.array,\r\n  visible: PropTypes.bool,\r\n  setAIFormData: PropTypes.func,\r\n  formDataAICockpit: PropTypes.object,\r\n  onChangeTool: PropTypes.func,\r\n  projectContext: PropTypes.object,\r\n  setAvailableModels: PropTypes.func,\r\n  setModelsInitialized: PropTypes.func,\r\n  modelsInitialized: PropTypes.bool,\r\n  availableModels: PropTypes.array,\r\n  initAIFormData: PropTypes.func,\r\n  showFirstAccordion: PropTypes.bool,\r\n  toggleShowFirstAccordion: PropTypes.func,\r\n  setAiUsedStructures: PropTypes.func,\r\n  roiLayers: PropTypes.array,\r\n  projectId: PropTypes.string,\r\n  onSave: PropTypes.func,\r\n  ome: PropTypes.object,\r\n  histogramConfig: PropTypes.object,\r\n  fileId: PropTypes.string,\r\n  project: PropTypes.object,\r\n};\r\n\r\nexport default withAllViewerContexts(withStyles(styles)(SideBarTabAI));\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport MoreVertIcon from \"@mui/icons-material/MoreVert\";\r\nimport DeleteIcon from \"@mui/icons-material/Delete\";\r\nimport PlaylistAddIcon from \"@mui/icons-material/PlaylistAdd\";\r\nimport ArrowUpwardIcon from \"@mui/icons-material/ArrowUpward\";\r\nimport ArrowDownwardIcon from \"@mui/icons-material/ArrowDownward\";\r\nimport FileCopyIcon from \"@mui/icons-material/FileCopy\";\r\n\r\nimport {\r\n  Tooltip,\r\n  IconButton,\r\n  Menu,\r\n  MenuItem,\r\n  ListItemIcon,\r\n  Divider,\r\n} from \"@mui/material\";\r\nimport { GetApp, Publish } from \"@mui/icons-material\";\r\n\r\nimport { intersects } from \"../utils/PolygonUtil\";\r\nimport { withSpinloader } from \"../../common/components/Spinloader\";\r\nimport { RegionROI } from \"../utils/ROI\";\r\nimport { getContainedRegionRois } from \"../utils/StructuresUtils\";\r\nimport { downloadArrayAsFile } from \"../../common/utils/Utils\";\r\n\r\nclass ListItemOptionsMenu extends Component {\r\n  state = {\r\n    optionsAnchorEl: null,\r\n  };\r\n\r\n  handleOptionsOpen = (e) => {\r\n    this.setState({ optionsAnchorEl: e.target });\r\n  };\r\n\r\n  handleOptionsClose = (e) => {\r\n    this.setState({ optionsAnchorEl: null });\r\n    e.preventDefault();\r\n    e.stopPropagation();\r\n    return false;\r\n  };\r\n\r\n  addSubType = (e) => {\r\n    const { structure, projectContext } = this.props;\r\n\r\n    if (structure.subtypeLevel < 9) {\r\n      projectContext.addSubType(structure);\r\n      structure.showSubtypes = true;\r\n      structure.hasChild = true;\r\n      this.handleOptionsClose(e);\r\n    }\r\n  };\r\n\r\n  addSubStructure = (e) => {\r\n    const { structure, projectContext } = this.props;\r\n\r\n    if (structure.subtypeLevel < 9) {\r\n      projectContext.addSubStructure(structure);\r\n      structure.showSubtypes = true;\r\n      structure.hasChild = true;\r\n      this.handleOptionsClose(e);\r\n    }\r\n  };\r\n\r\n  // start export of annotations of selected structure\r\n  exportAnnotations = (e) => {\r\n    const { projectContext } = this.props;\r\n    const { selectedLayer, structures } = projectContext;\r\n    const strData = projectContext.getProjectStringInfos();\r\n    const roiLayers = projectContext.roiLayers[projectContext.fileId];\r\n    let rois = getContainedRegionRois(\r\n      structures[selectedLayer],\r\n      structures,\r\n      roiLayers\r\n    );\r\n    let roiRegions = rois.map((regionRoi) => {\r\n      return {\r\n        regions: regionRoi.regions,\r\n        isObject: regionRoi.isObject,\r\n      };\r\n    });\r\n\r\n    console.log(\"roiRegions:\", roiRegions);\r\n\r\n    downloadArrayAsFile(\r\n      roiRegions,\r\n      strData.name +\r\n        \"_\" +\r\n        this.props.structure.label +\r\n        \"_\" +\r\n        strData.date +\r\n        \"_\" +\r\n        roiRegions.length +\r\n        \"_\" +\r\n        projectContext.user +\r\n        \".annhsa\"\r\n    );\r\n    this.handleOptionsClose(e);\r\n  };\r\n\r\n  // open file dialog and import structures from selcted file\r\n  importAnnotations = (e) => {\r\n    const { projectContext } = this.props;\r\n    const { structures, selectedLayer } = projectContext;\r\n    const roiLayers = projectContext.roiLayers[projectContext.fileId];\r\n    let inputElem = document.createElement(\"INPUT\");\r\n    inputElem.setAttribute(\"type\", \"file\");\r\n    inputElem.setAttribute(\"onChange\", \"file\");\r\n    inputElem.setAttribute(\"accept\", \".annhsa\");\r\n    inputElem.onchange = (e) => {\r\n      let files = e.target.files;\r\n      if (files.length <= 0) return false;\r\n\r\n      let fr = new FileReader();\r\n      fr.onload = (e) => {\r\n        this.props.spinloader.show();\r\n        //timeout, so spinloader can start\r\n        setTimeout(() => {\r\n          try {\r\n            let historyItem = [];\r\n            const histId = structures[selectedLayer].id;\r\n            let drawRegions = JSON.parse(e.target.result);\r\n            let nonOverlapping = [];\r\n            const tree = roiLayers[selectedLayer].tree;\r\n            for (let i = 0; i < drawRegions.length; i++) {\r\n              let drawRegion = drawRegions[i];\r\n              const roi = new RegionROI({\r\n                regions: drawRegion.regions,\r\n                isObject: drawRegion.isObject,\r\n                structureId: histId,\r\n              });\r\n              const overlappingRois = tree.search(roi.treeItem);\r\n              let intersecting = false;\r\n              for (let r of overlappingRois) {\r\n                try {\r\n                  if (intersects(roi, r.roi)) {\r\n                    intersecting = true;\r\n                    break;\r\n                  }\r\n                } catch (e) {\r\n                  intersecting = true;\r\n                  break;\r\n                }\r\n              }\r\n              if (!intersecting) {\r\n                nonOverlapping.push(roi);\r\n              }\r\n            }\r\n            nonOverlapping.forEach((r) => {\r\n              historyItem.push({ add: true, id: histId, roi: r });\r\n              roiLayers[selectedLayer].layer.regionRois.push(r);\r\n              tree.insert(r.treeItem);\r\n            });\r\n            roiLayers[selectedLayer].layer.regionRois = tree\r\n              .all()\r\n              .map((treeItem) => treeItem.roi);\r\n            window.projectHistory.add(historyItem);\r\n          } catch (e) {\r\n            console.log(\"not supported error:\", e);\r\n            window.showErrorSnackbar(\"File not supported!\");\r\n          }\r\n          this.props.spinloader.hide();\r\n        });\r\n      };\r\n      fr.readAsText(files.item(0));\r\n    };\r\n    inputElem.click();\r\n    inputElem.remove();\r\n    this.handleOptionsClose(e);\r\n  };\r\n\r\n  /**\r\n   * Checks if a structure can be moved in a direction.\r\n   *\r\n   * @param {int} direction - 1 is up -1 is down\r\n   * @returns {bool} Move in this direction possible\r\n   */\r\n  canMoveStructure = (direction) => {\r\n    const { structure, projectContext } = this.props;\r\n    return projectContext.canMoveStructure(structure, direction);\r\n  };\r\n\r\n  /**\r\n   * Moves a structure up or down in structure list\r\n   *\r\n   * @param {event} e\r\n   * @param {int} direction - 1 is up -1 is down\r\n   */\r\n  moveStructure = (e, direction) => {\r\n    const { structure, projectContext } = this.props;\r\n    const newSelectedLayer = projectContext.moveStructure(structure, direction);\r\n    if (newSelectedLayer) this.props.onSelectLayer(newSelectedLayer);\r\n    this.handleOptionsClose(e);\r\n  };\r\n\r\n  deleteStructure = (e) => {\r\n    const { structure, projectContext } = this.props;\r\n    let parentId = structure.parentId;\r\n    const newSelectedLayer = projectContext.deleteStructure(structure);\r\n    if (newSelectedLayer) this.props.onSelectLayer(newSelectedLayer);\r\n    this.handleOptionsClose(e);\r\n\r\n    // check if parent still has childs\r\n    let numberChilds = projectContext.structures.filter(\r\n      (element) => element.parentId === parentId\r\n    ).length;\r\n\r\n    if (numberChilds === 0 && parentId !== 0) {\r\n      let parentIdx = projectContext.structures.findIndex(\r\n        (element) => element.id === parentId\r\n      );\r\n      projectContext.structures[parentIdx].hasChild = false;\r\n    }\r\n  };\r\n\r\n  duplicateStructure = (e) => {\r\n    const { structure, projectContext } = this.props;\r\n    const newSelectedLayer = projectContext.duplicateStructure(structure);\r\n    if (newSelectedLayer) this.props.onSelectLayer(newSelectedLayer);\r\n    this.handleOptionsClose(e);\r\n  };\r\n\r\n  render() {\r\n    const { structure } = this.props;\r\n\r\n    const { optionsAnchorEl } = this.state;\r\n\r\n    return (\r\n      <React.Fragment>\r\n        <Tooltip disableInteractive title=\"Actions\">\r\n          <IconButton onClick={this.handleOptionsOpen} size=\"large\">\r\n            <MoreVertIcon />\r\n          </IconButton>\r\n        </Tooltip>\r\n        {optionsAnchorEl && (\r\n          <Menu\r\n            anchorEl={optionsAnchorEl}\r\n            keepMounted\r\n            open={Boolean(optionsAnchorEl)}\r\n            onClose={this.handleOptionsClose}\r\n          >\r\n            {structure.id !== 1 && [\r\n              <MenuItem\r\n                key={10000}\r\n                onClick={this.addSubType}\r\n                disabled={!structure.dynamic}\r\n              >\r\n                <ListItemIcon>\r\n                  <PlaylistAddIcon fontSize=\"small\" />\r\n                </ListItemIcon>\r\n                Add subtype\r\n              </MenuItem>,\r\n              <MenuItem\r\n                key={10001}\r\n                onClick={this.addSubStructure}\r\n                disabled={!structure.dynamic || structure.classificationSubtype}\r\n              >\r\n                <ListItemIcon>\r\n                  <PlaylistAddIcon fontSize=\"small\" />\r\n                </ListItemIcon>\r\n                Add substructure\r\n              </MenuItem>,\r\n              <MenuItem\r\n                key={10002}\r\n                onClick={this.duplicateStructure}\r\n                disabled={!structure.dynamic}\r\n              >\r\n                <ListItemIcon>\r\n                  <FileCopyIcon fontSize=\"small\" />\r\n                </ListItemIcon>\r\n                Duplicate structure\r\n              </MenuItem>,\r\n            ]}\r\n\r\n            <MenuItem key={10003} onClick={this.exportAnnotations}>\r\n              <ListItemIcon>\r\n                <GetApp fontSize=\"small\" />\r\n              </ListItemIcon>\r\n              Export annotations\r\n            </MenuItem>\r\n            <MenuItem key={10004} onClick={this.importAnnotations}>\r\n              <ListItemIcon>\r\n                <Publish fontSize=\"small\" />\r\n              </ListItemIcon>\r\n              Import annotations\r\n            </MenuItem>\r\n            {structure.id !== 1 && [\r\n              <Divider key={10005} />,\r\n              <MenuItem\r\n                key={10006}\r\n                onClick={(e) => this.moveStructure(e, 1)}\r\n                disabled={!this.canMoveStructure(1)}\r\n              >\r\n                <ListItemIcon>\r\n                  <ArrowUpwardIcon fontSize=\"small\" />\r\n                </ListItemIcon>\r\n                Move structure up\r\n              </MenuItem>,\r\n              <MenuItem\r\n                key={10007}\r\n                onClick={(e) => this.moveStructure(e, -1)}\r\n                disabled={!this.canMoveStructure(-1)}\r\n              >\r\n                <ListItemIcon>\r\n                  <ArrowDownwardIcon fontSize=\"small\" />\r\n                </ListItemIcon>\r\n                Move structure down\r\n              </MenuItem>,\r\n              <Divider key={10008} />,\r\n              <MenuItem\r\n                key={10009}\r\n                style={{ color: \"red\" }}\r\n                onClick={this.deleteStructure}\r\n                disabled={!structure.dynamic}\r\n              >\r\n                <ListItemIcon>\r\n                  <DeleteIcon fontSize=\"small\" style={{ color: \"red\" }} />\r\n                </ListItemIcon>\r\n                Delete structure\r\n              </MenuItem>,\r\n            ]}\r\n          </Menu>\r\n        )}\r\n      </React.Fragment>\r\n    );\r\n  }\r\n}\r\n\r\n// define the component's interface\r\nListItemOptionsMenu.propTypes = {\r\n  projectContext: PropTypes.object,\r\n  structure: PropTypes.object,\r\n  onSelectLayer: PropTypes.func,\r\n  spinloader: PropTypes.object,\r\n};\r\n\r\nexport default withSpinloader(ListItemOptionsMenu);\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport SketchColorPicker from \"../../common/components/SketchColorPicker\";\r\nimport {\r\n  getParentIndexLayer,\r\n  getParentIndex,\r\n  getContainedRegionRois,\r\n} from \"../utils/StructuresUtils\";\r\n\r\nimport {\r\n  Divider,\r\n  TextField,\r\n  ListItemButton,\r\n  ListItemText,\r\n  Tooltip,\r\n  IconButton,\r\n  Checkbox,\r\n} from \"@mui/material\";\r\n\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n\r\nimport ListItemOptionsMenu from \"./ListItemOptionsMenu\";\r\n\r\n// Icons\r\nimport VisibilityOffIcon from \"@mui/icons-material/VisibilityOff\";\r\nimport VisibilityIcon from \"@mui/icons-material/Visibility\";\r\nimport ArrowDropUpIcon from \"@mui/icons-material/ArrowDropUp\";\r\nimport ArrowDropDownIcon from \"@mui/icons-material/ArrowDropDown\";\r\nimport AccountTreeIcon from \"@mui/icons-material/AccountTree\";\r\nimport StopIcon from \"@mui/icons-material/Stop\";\r\n\r\n// define the component's styling\r\nconst styles = () => ({\r\n  listItem: {\r\n    \"&.Mui-selected\": {\r\n      background: \"rgba(0, 0, 0, 0.2) !important\",\r\n    },\r\n  },\r\n});\r\n\r\nclass ListItemSubType extends Component {\r\n  textFieldRef = React.createRef();\r\n  findChilds = (subType) => {\r\n    const { structures } = this.props;\r\n    // return all direct childs\r\n    return structures.filter(\r\n      (element) =>\r\n        element.subtypeLevel === subType.subtypeLevel + 1 &&\r\n        element.parentId === subType.id\r\n    );\r\n  };\r\n\r\n  findAllSubtypes = (str) => {\r\n    // find all childs of structure (not only direct childs)\r\n    let childs = this.findChilds(str);\r\n    let allChilds = [];\r\n    while (childs.length !== 0) {\r\n      childs = childs.concat(this.findChilds(childs[0]));\r\n      if (!allChilds.includes(childs[0])) {\r\n        allChilds.push(childs[0]);\r\n      }\r\n      childs.shift();\r\n    }\r\n    return allChilds;\r\n  };\r\n\r\n  hideSubtypes = (subType, lv) => {\r\n    const { structures } = this.props;\r\n    // hide subtypes if not unfolded anymore in sidebar\r\n    if (subType.hasChild) {\r\n      let childs = this.findChilds(subType);\r\n      for (let i = 0; i < childs.length; i++) {\r\n        this.hideSubtypes(childs[i], lv);\r\n      }\r\n    }\r\n    // make visibility like parent\r\n    if (subType.classificationSubtype && subType.subtypeLevel > lv) {\r\n      let idx = getParentIndex(subType, structures);\r\n      subType.visible = structures[idx].visible;\r\n    }\r\n    subType.showSubtypes = false;\r\n    subType.isUnfolded = false;\r\n  };\r\n\r\n  showSubtypes = (subType) => {\r\n    const { structures } = this.props;\r\n    // unfold direct subtypes of structure\r\n    structures.forEach(function (element) {\r\n      if (element.parentId === subType.id) {\r\n        element.isUnfolded = true;\r\n      }\r\n    });\r\n  };\r\n\r\n  visibilitySubtypesOff = (subType) => {\r\n    // set visibility of rois in viewer of subtypes to invisible\r\n    if (subType.hasChild) {\r\n      let childs = this.findChilds(subType);\r\n      for (let i = 0; i < childs.length; i++) {\r\n        this.visibilitySubtypesOff(childs[i]);\r\n      }\r\n    }\r\n    subType.visible = false;\r\n  };\r\n\r\n  visibilitySubtypesOn = (subType) => {\r\n    // set visibility of rois in viewer of subtypes to visible\r\n    if (subType.hasChild) {\r\n      let childs = this.findChilds(subType);\r\n      for (let i = 0; i < childs.length; i++) {\r\n        this.visibilitySubtypesOn(childs[i]);\r\n      }\r\n    }\r\n    subType.visible = true;\r\n  };\r\n\r\n  itemClicked = () => {\r\n    const {\r\n      structures,\r\n      onChangeTool,\r\n      activeTool,\r\n      showGallery,\r\n      updateStructureChange,\r\n      onSelectLayer,\r\n      subType,\r\n    } = this.props;\r\n    if (activeTool && activeTool.startsWith(\"iam_\")) {\r\n      onChangeTool(\"none\");\r\n    }\r\n    if (showGallery) {\r\n      updateStructureChange();\r\n    }\r\n\r\n    onSelectLayer(structures.findIndex((element) => element.id === subType.id));\r\n    this.props.tiles.setStructure(subType);\r\n    this.forceUpdate();\r\n  };\r\n\r\n  adaptRois = (str, newName) => {\r\n    const { roiLayers, structures } = this.props;\r\n    // change subtypename of rois\r\n    let parentIdxLayer = getParentIndexLayer(str, structures);\r\n    roiLayers[parentIdxLayer].layer.regionRois.forEach((element) => {\r\n      if (element.structureId === str.id) {\r\n        element.subtypeName = newName;\r\n      }\r\n    });\r\n  };\r\n\r\n  render() {\r\n    const {\r\n      roiLayers,\r\n      selectedLayer,\r\n      structures,\r\n      projectContext,\r\n      onChangeLayers,\r\n      updateViewer,\r\n      // item specific\r\n      subType,\r\n      parent,\r\n      i,\r\n      onSelectLayer,\r\n      classes,\r\n      renderLocation,\r\n      formData,\r\n      allStructuresEnabled,\r\n    } = this.props;\r\n\r\n    // only draw if it is in subtypes of parent\r\n    if (\r\n      renderLocation == \"SideBarTabRois\" &&\r\n      !this.findAllSubtypes(parent).includes(subType)\r\n    ) {\r\n      return <div></div>;\r\n    }\r\n\r\n    // calculate if draw divider to seperate substructures from classification subtypes\r\n    let drawDivider = false;\r\n    let parentIndex = structures.findIndex(\r\n      (element) => element.id === subType.parentId\r\n    );\r\n    let childs = this.findChilds(structures[parentIndex]);\r\n    let subStructures = childs.filter(\r\n      (element) => !element.classificationSubtype\r\n    );\r\n    if (subStructures.length !== 0) {\r\n      // parent has substructures\r\n      let classificationChilds = childs.filter(\r\n        (element) => element.classificationSubtype\r\n      );\r\n      // if subType is first classification subtype --> draw divider\r\n      if (\r\n        classificationChilds[classificationChilds.length - 1] &&\r\n        subType.label ===\r\n          classificationChilds[classificationChilds.length - 1].label\r\n      ) {\r\n        drawDivider = true;\r\n      }\r\n    }\r\n\r\n    const index = structures.findIndex((element) => element.id === subType.id);\r\n\r\n    let numberOfObjects = getContainedRegionRois(\r\n      subType,\r\n      structures,\r\n      roiLayers\r\n    ).length;\r\n\r\n    // check if structure is unfolded/visible in sidebar\r\n    if (!subType.isUnfolded && renderLocation == \"SideBarTabRois\") {\r\n      return null;\r\n    }\r\n\r\n    return (\r\n      <div\r\n        ref={(el) => {\r\n          this.listItemRef = el;\r\n        }}\r\n        style={{\r\n          height: 48,\r\n          width: \"100%\",\r\n        }}\r\n      >\r\n        {(renderLocation == \"AI-Cockpit\" ||\r\n          this.props.isInView(this.listItemRef) > 0) && (\r\n          <div key={index + 200 + i}>\r\n            <ListItemButton\r\n              disabled={\r\n                numberOfObjects == 0 &&\r\n                renderLocation == \"AI-Cockpit\" &&\r\n                !allStructuresEnabled\r\n              }\r\n              selected={\r\n                selectedLayer ===\r\n                  structures.findIndex(\r\n                    (element) => element.id === subType.id\r\n                  ) && renderLocation == \"SideBarTabRois\"\r\n              }\r\n              className={classes.listItem}\r\n              style={{\r\n                paddingBottom: 0,\r\n                paddingTop: 0,\r\n              }}\r\n              onClick={() => {\r\n                if (renderLocation == \"SideBarTabRois\") {\r\n                  this.itemClicked();\r\n                }\r\n              }}\r\n            >\r\n              {renderLocation == \"AI-Cockpit\" && (\r\n                <Checkbox\r\n                  name=\"CheckboxStructureSelection\"\r\n                  onChange={(e) => {\r\n                    this.props.updateFormDataStructures(\r\n                      structures[subType.index],\r\n                      e.currentTarget.checked\r\n                    );\r\n                  }}\r\n                  checked={\r\n                    formData.selStructures.findIndex(\r\n                      (item) => item.id === structures[subType.index].id\r\n                    ) > -1\r\n                  }\r\n                />\r\n              )}\r\n\r\n              <IconButton\r\n                style={{\r\n                  background: \"none\",\r\n                  paddingLeft: (subType.subtypeLevel - 1) * 24,\r\n                }}\r\n                size=\"large\"\r\n              >\r\n                {subType.classificationSubtype ? (\r\n                  <AccountTreeIcon style={{ fontSize: \"small\" }} />\r\n                ) : (\r\n                  <StopIcon style={{ fontSize: \"small\" }} />\r\n                )}\r\n              </IconButton>\r\n              {selectedLayer === index ? (\r\n                <Tooltip\r\n                  disableInteractive\r\n                  title={numberOfObjects + \" objects\"}\r\n                >\r\n                  <span style={{ width: \"100%\", minWidth: 0 }}>\r\n                    <TextField\r\n                      inputRef={this.textFieldRef}\r\n                      name=\"Textfield\"\r\n                      variant=\"standard\"\r\n                      style={{\r\n                        width: \"100%\",\r\n                        \"& input\": {\r\n                          textOverflow: \"ellipsis\",\r\n                          overflow: \"hidden\",\r\n                          whiteSpace: \"nowrap\",\r\n                        },\r\n                      }}\r\n                      value={subType.label}\r\n                      onChange={(e) => {\r\n                        if (\r\n                          e.target.value.includes(\"_\") ||\r\n                          e.target.value.includes(\"/\")\r\n                        ) {\r\n                          window.showWarningSnackbar(\r\n                            \"Do no use / and _ inside structure names.\"\r\n                          );\r\n                          return; // do not allow these signs in structure label\r\n                        }\r\n                        // update rois and structure\r\n                        this.adaptRois(subType, e.target.value);\r\n                        subType.label = e.target.value;\r\n                        projectContext.forceUpdate();\r\n                      }}\r\n                      onBlur={() => {\r\n                        projectContext.sendStructures(\r\n                          projectContext.structures\r\n                        );\r\n                      }}\r\n                      onKeyDown={(e) => {\r\n                        if (e.key === \"Enter\") {\r\n                          this.textFieldRef.current.blur();\r\n                        }\r\n                      }}\r\n                      InputProps={{\r\n                        disableUnderline: true,\r\n                      }}\r\n                    />\r\n                  </span>\r\n                </Tooltip>\r\n              ) : (\r\n                <Tooltip\r\n                  disableInteractive\r\n                  title={numberOfObjects + \" objects\"}\r\n                >\r\n                  <span style={{ width: \"100%\", minWidth: 0 }}>\r\n                    <ListItemText\r\n                      style={{\r\n                        padding: \"0px\",\r\n                      }}\r\n                      primary={\r\n                        <div\r\n                          style={{\r\n                            textOverflow: \"ellipsis\",\r\n                            overflow: \"hidden\",\r\n                            whiteSpace: \"nowrap\",\r\n                          }}\r\n                        >\r\n                          {subType.label}\r\n                        </div>\r\n                      }\r\n                    />\r\n                  </span>\r\n                </Tooltip>\r\n              )}\r\n              {subType.hasChild && renderLocation == \"SideBarTabRois\" && (\r\n                <IconButton\r\n                  onClick={() => {\r\n                    if (subType.showSubtypes === false) {\r\n                      this.showSubtypes(subType);\r\n                      subType.showSubtypes = true;\r\n                    } else {\r\n                      this.hideSubtypes(subType, subType.subtypeLevel);\r\n                      subType.isUnfolded = true;\r\n                    }\r\n                    setTimeout(() => {\r\n                      this.props.forceSidebarUpdate();\r\n                    }, 10);\r\n                  }}\r\n                  size=\"large\"\r\n                >\r\n                  {subType.showSubtypes ? (\r\n                    <ArrowDropUpIcon />\r\n                  ) : (\r\n                    <ArrowDropDownIcon />\r\n                  )}\r\n                </IconButton>\r\n              )}\r\n              {renderLocation == \"SideBarTabRois\" && (\r\n                <Tooltip disableInteractive title=\"Hide current structure\">\r\n                  <IconButton\r\n                    onClick={() => {\r\n                      subType.visible = !subType.visible;\r\n                      if (!subType.visible) {\r\n                        this.visibilitySubtypesOff(subType);\r\n                      } else {\r\n                        this.visibilitySubtypesOn(subType);\r\n                      }\r\n                      this.forceUpdate();\r\n                      onChangeLayers(roiLayers);\r\n                    }}\r\n                    size=\"large\"\r\n                  >\r\n                    {subType.visible ? (\r\n                      <VisibilityIcon />\r\n                    ) : (\r\n                      <VisibilityOffIcon />\r\n                    )}\r\n                  </IconButton>\r\n                </Tooltip>\r\n              )}\r\n\r\n              <SketchColorPicker\r\n                color={subType.color}\r\n                handleChange={(color) => {\r\n                  subType.color = color;\r\n                  // adjust roi color\r\n                  let parLayer = getParentIndexLayer(subType, structures);\r\n                  roiLayers[parLayer].layer.regionRois.forEach(function (\r\n                    element\r\n                  ) {\r\n                    if (\r\n                      subType.classificationSubtype &&\r\n                      element.subtypeName === subType.label\r\n                    ) {\r\n                      element.color = color;\r\n                    }\r\n                    if (\r\n                      !subType.classificationSubtype &&\r\n                      element.subtypeName === \"\"\r\n                    ) {\r\n                      element.color = color;\r\n                    }\r\n                  });\r\n                  updateViewer();\r\n                  projectContext.sendStructures(structures);\r\n                }}\r\n              />\r\n              {!this.props.viewerConfig.project.projectProperties[\r\n                \"HideSubMenus\"\r\n              ] &&\r\n                renderLocation == \"SideBarTabRois\" && (\r\n                  <ListItemOptionsMenu\r\n                    projectContext={projectContext}\r\n                    structure={subType}\r\n                    onSelectLayer={onSelectLayer}\r\n                  />\r\n                )}\r\n            </ListItemButton>\r\n            {drawDivider && <Divider />}\r\n          </div>\r\n        )}\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\n// define the component's interface\r\nListItemSubType.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  structures: PropTypes.array,\r\n  roiLayers: PropTypes.array,\r\n  onChangeTool: PropTypes.func,\r\n  activeTool: PropTypes.string,\r\n  showGallery: PropTypes.bool,\r\n  updateStructureChange: PropTypes.func,\r\n  projectContext: PropTypes.object,\r\n  viewerConfig: PropTypes.object,\r\n  tiles: PropTypes.object,\r\n  onChangeLayers: PropTypes.func,\r\n  updateViewer: PropTypes.func,\r\n  onSelectLayer: PropTypes.func,\r\n  isAdmin: PropTypes.bool,\r\n  // item specific\r\n  subType: PropTypes.object,\r\n  parent: PropTypes.object,\r\n  i: PropTypes.number,\r\n  selectedLayer: PropTypes.number,\r\n  isInView: PropTypes.func,\r\n  forceSidebarUpdate: PropTypes.func,\r\n  renderLocation: PropTypes.string,\r\n  updateFormDataStructures: PropTypes.func,\r\n  formData: PropTypes.object,\r\n  allStructuresEnabled: PropTypes.bool,\r\n};\r\n\r\nexport default withStyles(styles)(ListItemSubType);\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport SketchColorPicker from \"../../common/components/SketchColorPicker\";\r\n\r\nimport ListItemOptionsMenu from \"./ListItemOptionsMenu\";\r\n\r\nimport {\r\n  TextField,\r\n  ListItemText,\r\n  Tooltip,\r\n  IconButton,\r\n  Checkbox,\r\n  ListItemButton,\r\n} from \"@mui/material\";\r\n\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n\r\n// Icons\r\nimport VisibilityOffIcon from \"@mui/icons-material/VisibilityOff\";\r\nimport VisibilityIcon from \"@mui/icons-material/Visibility\";\r\nimport ArrowDropUpIcon from \"@mui/icons-material/ArrowDropUp\";\r\nimport ArrowDropDownIcon from \"@mui/icons-material/ArrowDropDown\";\r\n\r\n// define the component's styling\r\nconst styles = () => ({\r\n  listItem: {\r\n    \"&.Mui-selected\": {\r\n      background: \"rgba(0, 0, 0, 0.2) !important\",\r\n    },\r\n  },\r\n  structureInput: {\r\n    \"& >div\": {\r\n      width: \"100%\",\r\n    },\r\n    \"& input\": {\r\n      textOverflow: \"ellipsis\",\r\n      overflow: \"hidden\",\r\n      whiteSpace: \"nowrap\",\r\n    },\r\n  },\r\n});\r\n\r\nclass ListItemStructure extends Component {\r\n  state = {\r\n    optionsAnchorEl: null,\r\n  };\r\n\r\n  findChilds = (subType) => {\r\n    const { structures } = this.props;\r\n    // return all direct childs\r\n    return structures.filter(\r\n      (element) =>\r\n        element.subtypeLevel === subType.subtypeLevel + 1 &&\r\n        element.parentId === subType.id\r\n    );\r\n  };\r\n\r\n  getParentIndex = (structure) => {\r\n    // return index of parent structure\r\n    let parentIndex = this.props.structures.findIndex(\r\n      (element) => element.id === structure.parentId\r\n    );\r\n    return parentIndex;\r\n  };\r\n\r\n  hideSubtypes = (subType, lv) => {\r\n    const { structures } = this.props;\r\n    // hide subtypes if not unfolded anymore in sidebar\r\n    if (subType.hasChild) {\r\n      let childs = this.findChilds(subType);\r\n      for (let i = 0; i < childs.length; i++) {\r\n        this.hideSubtypes(childs[i], lv);\r\n      }\r\n    }\r\n    // make visibility like parent\r\n    if (subType.classificationSubtype && subType.subtypeLevel > lv) {\r\n      let idx = this.getParentIndex(subType);\r\n      subType.visible = structures[idx].visible;\r\n    }\r\n    subType.showSubtypes = false;\r\n    subType.isUnfolded = false;\r\n    this.props.projectContext.forceUpdate();\r\n  };\r\n\r\n  showSubtypes = (subType) => {\r\n    const { structures } = this.props;\r\n    // unfold direct subtypes of structure\r\n    for (let structure of structures) {\r\n      if (structure.parentId === subType.id) {\r\n        structure.isUnfolded = true;\r\n      }\r\n    }\r\n    this.props.projectContext.setState({ structures });\r\n  };\r\n\r\n  visibilitySubtypesOff = (subType) => {\r\n    // set visibility of rois in viewer of subtypes to invisible\r\n    if (subType.hasChild) {\r\n      let childs = this.findChilds(subType);\r\n      for (let i = 0; i < childs.length; i++) {\r\n        this.visibilitySubtypesOff(childs[i]);\r\n      }\r\n    }\r\n    subType.visible = false;\r\n    this.props.projectContext.forceUpdate();\r\n  };\r\n\r\n  visibilitySubtypesOn = (subType) => {\r\n    // set visibility of rois in viewer of subtypes to visible\r\n    if (subType.hasChild) {\r\n      let childs = this.findChilds(subType);\r\n      for (let i = 0; i < childs.length; i++) {\r\n        this.visibilitySubtypesOn(childs[i]);\r\n      }\r\n    }\r\n    subType.visible = true;\r\n    this.props.projectContext.forceUpdate();\r\n  };\r\n\r\n  selectStructure = (structure, index) => {\r\n    this.props.onSelectLayer(index, () => {\r\n      this.props.tiles.setStructure(structure);\r\n    });\r\n  };\r\n\r\n  adaptRois = (str, newName) => {\r\n    const { roiLayers, selectedLayer } = this.props;\r\n    // change subtypename of rois\r\n    roiLayers[selectedLayer].layer.regionRois.forEach((element) => {\r\n      if (element.structureId === str.id) {\r\n        element.subtypeName = newName;\r\n      }\r\n    });\r\n  };\r\n\r\n  render() {\r\n    const {\r\n      selectedLayer,\r\n      roiLayers,\r\n      classes,\r\n      projectContext,\r\n      onChangeLayers,\r\n      updateViewer,\r\n      onSelectLayer,\r\n      // item props\r\n      structure,\r\n      index,\r\n      textInputRef,\r\n      setTextInputRef,\r\n      renderLocation,\r\n      structures,\r\n      formData,\r\n      allStructuresEnabled,\r\n    } = this.props;\r\n\r\n    return (\r\n      <ListItemButton\r\n        className={classes.listItem}\r\n        disabled={\r\n          renderLocation == \"AI-Cockpit\" &&\r\n          !allStructuresEnabled &&\r\n          (roiLayers[index].layer.regionRois.length == 0 ||\r\n            structure.label == \"Base ROI\")\r\n        }\r\n        key={index}\r\n        selected={selectedLayer === index && renderLocation == \"SideBarTabRois\"}\r\n        style={{\r\n          paddingBottom: 0,\r\n          paddingTop: 0,\r\n        }}\r\n        onClick={() => {\r\n          if (renderLocation == \"SideBarTabRois\") {\r\n            this.selectStructure(structure, index);\r\n          }\r\n        }}\r\n      >\r\n        {renderLocation == \"AI-Cockpit\" && (\r\n          <Checkbox\r\n            name=\"CheckboxStructure\"\r\n            onChange={(e) => {\r\n              this.props.updateFormDataStructures(\r\n                structures[structure.index],\r\n                e.currentTarget.checked\r\n              );\r\n            }}\r\n            checked={\r\n              formData.selStructures.findIndex(\r\n                (item) => item.id === structures[structure.index].id\r\n              ) > -1\r\n            }\r\n          />\r\n        )}\r\n\r\n        {selectedLayer === index ? (\r\n          <Tooltip\r\n            disableInteractive\r\n            title={roiLayers[index].layer.regionRois.length + \" objects\"}\r\n          >\r\n            <span style={{ width: \"100%\", minWidth: 0 }}>\r\n              <TextField\r\n                variant=\"standard\"\r\n                name=\"Textfield\"\r\n                style={{\r\n                  width: \"100%\",\r\n                }}\r\n                className={classes.structureInput}\r\n                value={structure.label === null ? \"\" : structure.label}\r\n                onChange={(e) => {\r\n                  if (\r\n                    e.target.value.includes(\"_\") ||\r\n                    e.target.value.includes(\"/\")\r\n                  ) {\r\n                    window.showWarningSnackbar(\r\n                      \"Do no use / and _ inside structure names.\"\r\n                    );\r\n                    return; // do not allow these signs in structure label\r\n                  }\r\n                  // update rois and structure\r\n                  this.adaptRois(structure, e.target.value);\r\n                  structure.label = e.target.value;\r\n                  projectContext.forceUpdate();\r\n                }}\r\n                onBlur={() => {\r\n                  projectContext.sendStructures(projectContext.structures);\r\n                }}\r\n                onKeyDown={(e) => {\r\n                  if (e.key === \"Enter\") {\r\n                    textInputRef.blur();\r\n                  }\r\n                }}\r\n                inputRef={setTextInputRef}\r\n                InputProps={{\r\n                  disableUnderline: true,\r\n                }}\r\n              />\r\n            </span>\r\n          </Tooltip>\r\n        ) : (\r\n          <Tooltip\r\n            disableInteractive\r\n            title={\r\n              roiLayers[index]\r\n                ? roiLayers[index].layer.regionRois.length + \" objects\"\r\n                : \"\"\r\n            }\r\n          >\r\n            <span style={{ width: \"100%\", minWidth: 0 }}>\r\n              <ListItemText\r\n                style={{\r\n                  padding: \"0px\",\r\n                }}\r\n                primary={\r\n                  <div\r\n                    style={{\r\n                      textOverflow: \"ellipsis\",\r\n                      overflow: \"hidden\",\r\n                      whiteSpace: \"nowrap\",\r\n                    }}\r\n                  >\r\n                    {structure.label || \"Brightfield\"}\r\n                  </div>\r\n                }\r\n              />\r\n            </span>\r\n          </Tooltip>\r\n        )}\r\n\r\n        {structure.hasChild && renderLocation == \"SideBarTabRois\" && (\r\n          <IconButton\r\n            onClick={() => {\r\n              if (structure.showSubtypes === false) {\r\n                this.showSubtypes(structure);\r\n                structure.showSubtypes = true;\r\n              } else {\r\n                this.hideSubtypes(structure, structure.subtypeLevel);\r\n                structure.isUnfolded = true;\r\n              }\r\n              setTimeout(() => {\r\n                this.props.forceSidebarUpdate();\r\n              }, 10);\r\n            }}\r\n            size=\"large\"\r\n          >\r\n            {structure.showSubtypes ? (\r\n              <ArrowDropUpIcon />\r\n            ) : (\r\n              <ArrowDropDownIcon />\r\n            )}\r\n          </IconButton>\r\n        )}\r\n        {renderLocation == \"SideBarTabRois\" && (\r\n          <Tooltip\r\n            disableInteractive\r\n            title={(structure.visible ? \"Hide\" : \"Show\") + \" current structure\"}\r\n          >\r\n            <IconButton\r\n              onClick={(e) => {\r\n                structure.visible = !structure.visible;\r\n                if (!structure.visible) {\r\n                  this.visibilitySubtypesOff(structure);\r\n                } else {\r\n                  this.visibilitySubtypesOn(structure);\r\n                }\r\n                this.forceUpdate();\r\n                onChangeLayers(roiLayers);\r\n                e.stopPropagation();\r\n              }}\r\n              size=\"large\"\r\n            >\r\n              {structure.visible ? <VisibilityIcon /> : <VisibilityOffIcon />}\r\n            </IconButton>\r\n          </Tooltip>\r\n        )}\r\n\r\n        {structure.color !== -1 && (\r\n          <SketchColorPicker\r\n            color={structure.color}\r\n            handleChange={(color) => {\r\n              structure.color = color;\r\n              // adjust roi color\r\n              roiLayers[selectedLayer].layer.regionRois.forEach(function (\r\n                element\r\n              ) {\r\n                if (element.subtypeName === \"\") {\r\n                  element.color = color;\r\n                }\r\n              });\r\n              updateViewer();\r\n              projectContext.sendStructures(structures);\r\n            }}\r\n          />\r\n        )}\r\n        {!this.props.viewerConfig.project.projectProperties[\"HideSubMenus\"] &&\r\n          renderLocation == \"SideBarTabRois\" && (\r\n            <ListItemOptionsMenu\r\n              projectContext={projectContext}\r\n              structure={structure}\r\n              onSelectLayer={onSelectLayer}\r\n            />\r\n          )}\r\n      </ListItemButton>\r\n    );\r\n  }\r\n}\r\n\r\n// define the component's interface\r\nListItemStructure.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  roiLayers: PropTypes.array,\r\n  structures: PropTypes.array,\r\n  selectedLayer: PropTypes.number,\r\n  projectContext: PropTypes.object,\r\n  viewerConfig: PropTypes.object,\r\n  onChangeLayers: PropTypes.func,\r\n  updateViewer: PropTypes.func,\r\n  isAdmin: PropTypes.bool,\r\n  // item specific\r\n  structure: PropTypes.object,\r\n  tiles: PropTypes.object,\r\n  index: PropTypes.number,\r\n  activeTool: PropTypes.string,\r\n  textInputRef: PropTypes.object,\r\n  setTextInputRef: PropTypes.func,\r\n  onChangeTool: PropTypes.func,\r\n  showGallery: PropTypes.bool,\r\n  updateStructureChange: PropTypes.func,\r\n  onSelectLayer: PropTypes.func,\r\n  forceSidebarUpdate: PropTypes.func,\r\n  renderLocation: PropTypes.string,\r\n  updateFormDataStructures: PropTypes.func,\r\n  formData: PropTypes.object,\r\n  allStructuresEnabled: PropTypes.bool,\r\n};\r\n\r\nexport default withStyles(styles)(ListItemStructure);\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n\r\nimport {\r\n  getParentIndexLayer,\r\n  getContainedRegionRois,\r\n} from \"../../../viewer/utils/StructuresUtils\";\r\n\r\nimport {\r\n  TextField,\r\n  Grid,\r\n  List,\r\n  ListItem,\r\n  ListItemButton,\r\n  ListItemText,\r\n  Typography,\r\n  Tooltip,\r\n  FormHelperText,\r\n  Slider,\r\n  IconButton,\r\n  FormControl,\r\n  Select,\r\n  MenuItem,\r\n} from \"@mui/material\";\r\n\r\nimport {\r\n  Delete,\r\n  VisibilityOff,\r\n  GetApp,\r\n  Publish,\r\n  Visibility,\r\n  Add,\r\n} from \"@mui/icons-material\";\r\nimport { withAllViewerContexts } from \"../../contexts/AllViewerContexts\";\r\nimport { withTiles } from \"../../contexts/TilesContext\";\r\nimport ListItemSubType from \"../ListItemSubType\";\r\nimport ListItemStructure from \"../ListItemStructure\";\r\n\r\n// define the component's styling\r\nconst styles = () => ({\r\n  roiContainer: {\r\n    padding: 20,\r\n    overflowY: \"auto\",\r\n    width: 355,\r\n  },\r\n  flexVerticalContainer: {\r\n    height: \"100%\",\r\n    display: \"grid\",\r\n    gridTemplateRows: \"1fr auto\",\r\n  },\r\n  flexRowContentHeight: {\r\n    padding: 10,\r\n  },\r\n  flexRowRemainingHeight: {\r\n    overflowY: \"auto\",\r\n    overflowX: \"hidden\",\r\n  },\r\n  spacing: {\r\n    padding: 10,\r\n    paddingBottom: 0,\r\n    paddingTop: 0,\r\n  },\r\n});\r\n\r\nclass SideBarTabRois extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n    this.state = {\r\n      dynamicStructureText: \"\",\r\n      structuresListHeight: 300,\r\n      selectedStructureView: \"all\",\r\n    };\r\n    this.textInputRef = React.createRef();\r\n    this.focusTextInput = this.focusTextInput.bind(this);\r\n    this.structureRefs = [];\r\n  }\r\n\r\n  componentWillUnmount = () => {\r\n    if (this.structureScrollList) {\r\n      this.structureScrollList.removeEventListener(\r\n        \"scroll\",\r\n        this.handlestructureListScroll\r\n      );\r\n    }\r\n  };\r\n\r\n  handlestructureListScroll = () => {\r\n    this.forceUpdate();\r\n  };\r\n\r\n  focusTextInput() {\r\n    setTimeout(() => {\r\n      if (this.textInputRef) {\r\n        this.textInputRef.select();\r\n      }\r\n    }, 100);\r\n  }\r\n\r\n  countVisibleStructures = () => {\r\n    return this.props.structures.reduce(\r\n      (acc, cur) => acc + (cur.visible ? 1 : 0),\r\n      0\r\n    );\r\n  };\r\n\r\n  checkToolInConfig(toolName) {\r\n    if (this.props.viewerConfig) {\r\n      if (this.props.viewerConfig.project.toolsInProject[toolName]) {\r\n        return true;\r\n      } else {\r\n        return false;\r\n      }\r\n    }\r\n  }\r\n\r\n  addStructure = () => {\r\n    const { roiLayers, projectContext } = this.props;\r\n    const { dynamicStructureText } = this.state;\r\n    // add dynamic structure\r\n    if (dynamicStructureText !== \"\") {\r\n      projectContext.addStructure(dynamicStructureText);\r\n      this.props.onSelectLayer(roiLayers.length - 1);\r\n      this.focusTextInput();\r\n      this.setState({ dynamicStructureText: \"\" });\r\n    }\r\n  };\r\n\r\n  isInView = (el) => {\r\n    if (\r\n      !this.structureScrollList ||\r\n      this.structureScrollList.getBoundingClientRect().height === 0\r\n    ) {\r\n      this.structureScrollList = document.getElementById(\r\n        \"StructuresListContainer\"\r\n      );\r\n      if (\r\n        this.structureScrollList &&\r\n        this.structureScrollList.getAttribute(\"listener\") !== \"true\"\r\n      ) {\r\n        this.structureScrollList.addEventListener(\r\n          \"scroll\",\r\n          this.handlestructureListScroll\r\n        );\r\n      }\r\n    }\r\n    let result = true;\r\n    if (this.structureScrollList && el) {\r\n      let parentTop = this.structureScrollList.getBoundingClientRect().top;\r\n      let parentHeight =\r\n        this.structureScrollList.getBoundingClientRect().height;\r\n      let elTop = el.getBoundingClientRect().top;\r\n      let elHeight = el.getBoundingClientRect().height;\r\n\r\n      result = elTop + elHeight > parentTop && elTop < parentTop + parentHeight;\r\n    }\r\n    return result;\r\n  };\r\n\r\n  isStructureAndShown = (structure) => {\r\n    const { roiLayers, structures } = this.props;\r\n    let isVisible = !structure.isSubtype;\r\n    if (this.state.selectedStructureView === \"all\") {\r\n      return isVisible;\r\n    }\r\n    return (\r\n      isVisible &&\r\n      getContainedRegionRois(structure, structures, roiLayers).length > 0\r\n    );\r\n  };\r\n\r\n  isSubtypeAndShown = (structure) => {\r\n    const { roiLayers, structures } = this.props;\r\n    let isVisible = structure.isSubtype && structure.subtypeLevel > 0;\r\n    if (this.state.selectedStructureView === \"all\") {\r\n      return isVisible;\r\n    }\r\n    return (\r\n      isVisible &&\r\n      getContainedRegionRois(structure, structures, roiLayers).length > 0\r\n    );\r\n  };\r\n\r\n  onChangeStructureView = (e) => {\r\n    const { structures } = this.props;\r\n    const value = e.target.value;\r\n    if (value === \"annotated\") {\r\n      structures.forEach(function (element) {\r\n        if (element.isSubtype) {\r\n          element.isUnfolded = true;\r\n        }\r\n        if (element.hasChild) {\r\n          element.showSubtypes = true;\r\n        }\r\n      });\r\n    } else {\r\n      structures.forEach(function (element) {\r\n        if (element.isSubtype) {\r\n          element.isUnfolded = false;\r\n        }\r\n        if (element.hasChild) {\r\n          element.showSubtypes = false;\r\n        }\r\n      });\r\n    }\r\n    this.setState({ selectedStructureView: e.target.value });\r\n  };\r\n\r\n  render() {\r\n    const {\r\n      ome,\r\n      rois,\r\n      activeTool,\r\n      roiLayers,\r\n      selectedLayer,\r\n      structures,\r\n      visible,\r\n      isAdmin,\r\n    } = this.props;\r\n    const { classes, ...propsWithoutClasses } = this.props;\r\n    const { groupPermissions } = this.props.projectContext;\r\n\r\n    const { dynamicStructureText } = this.state;\r\n\r\n    if (!visible) return null;\r\n    const annotatedStructureCount = roiLayers.reduce((acc, structureLayer) => {\r\n      if (structureLayer.layer.regionRois.length > 0) {\r\n        return acc + 1;\r\n      }\r\n      return acc;\r\n    }, 0);\r\n\r\n    return (\r\n      <Grid\r\n        className={`${classes.tabContent} ${classes.flexRowRemainingHeight} ${classes.flexVerticalContainer}`}\r\n      >\r\n        {activeTool !== \"comment\" && (\r\n          <div\r\n            style={{\r\n              overflowY: \"auto\",\r\n              display: \"grid\",\r\n              gridTemplateRows: \"auto 1fr\",\r\n              height: \"100%\",\r\n            }}\r\n          >\r\n            <Grid className={classes.flexRowContentHeight} item>\r\n              <Typography variant=\"h6\">\r\n                <FormControl>\r\n                  <Select\r\n                    name=\"SelectStructureView\"\r\n                    value={this.state.selectedStructureView}\r\n                    onChange={this.onChangeStructureView}\r\n                    inputProps={{\r\n                      \"aria-label\": \"structure view\",\r\n                    }}\r\n                    variant=\"standard\"\r\n                  >\r\n                    <MenuItem value=\"all\">\r\n                      {ome\r\n                        ? \"All Structures (\" + roiLayers.length + \"):\"\r\n                        : \"Channels:\"}\r\n                    </MenuItem>\r\n                    <MenuItem value=\"annotated\">\r\n                      {ome\r\n                        ? \"Annotated Structures (\" +\r\n                          annotatedStructureCount +\r\n                          \"):\"\r\n                        : \"Channels:\"}\r\n                    </MenuItem>\r\n                  </Select>\r\n                </FormControl>\r\n\r\n                <Tooltip\r\n                  disableInteractive\r\n                  title={\r\n                    groupPermissions.canAnnotate\r\n                      ? \"Clear selected structures\"\r\n                      : \"No Permission!\"\r\n                  }\r\n                >\r\n                  <span>\r\n                    <IconButton\r\n                      disabled={\r\n                        selectedLayer < 0 || !groupPermissions.canAnnotate\r\n                      }\r\n                      onClick={() => {\r\n                        let selectedStructure = structures[selectedLayer];\r\n                        let historyItem = roiLayers[\r\n                          selectedLayer\r\n                        ].layer.regionRois.map((roi) => {\r\n                          return {\r\n                            add: false,\r\n                            id: structures[selectedLayer].id,\r\n                            roi: roi,\r\n                          };\r\n                        });\r\n                        window.projectHistory.add(historyItem);\r\n                        roiLayers[selectedLayer].layer.regionRois = [];\r\n                        roiLayers[selectedLayer].tree.clear();\r\n                        if (selectedStructure.isSubtype) {\r\n                          let parentIdx = getParentIndexLayer(\r\n                            selectedStructure,\r\n                            structures\r\n                          );\r\n                          roiLayers[parentIdx].layer.regionRois = roiLayers[\r\n                            parentIdx\r\n                          ].layer.regionRois.filter((regionRoi) => {\r\n                            if (\r\n                              regionRoi.subtypeName === selectedStructure.label\r\n                            ) {\r\n                              roiLayers[parentIdx].tree.remove(\r\n                                regionRoi.treeItem\r\n                              );\r\n                              return false;\r\n                            } else {\r\n                              return true;\r\n                            }\r\n                          });\r\n                        }\r\n                      }}\r\n                      size=\"large\"\r\n                    >\r\n                      <Delete />\r\n                    </IconButton>\r\n                  </span>\r\n                </Tooltip>\r\n\r\n                <Tooltip\r\n                  disableInteractive\r\n                  title={\r\n                    this.countVisibleStructures() > 0\r\n                      ? \"Hide all structures [Shift] + [R]\"\r\n                      : \"Show all structures [Shift] + [R]\"\r\n                  }\r\n                >\r\n                  <span>\r\n                    <IconButton\r\n                      id=\"toggleAllStructuresBtn\"\r\n                      disabled={selectedLayer < 0}\r\n                      onClick={() => {\r\n                        if (this.countVisibleStructures() > 0) {\r\n                          for (let roiLayer of structures) {\r\n                            roiLayer.visible = false;\r\n                          }\r\n                        } else {\r\n                          for (let roiLayer of structures) {\r\n                            roiLayer.visible = true;\r\n                          }\r\n                        }\r\n                        this.forceUpdate();\r\n                      }}\r\n                      size=\"large\"\r\n                    >\r\n                      {this.countVisibleStructures() === 0 ? (\r\n                        <Visibility />\r\n                      ) : (\r\n                        <VisibilityOff />\r\n                      )}\r\n                    </IconButton>\r\n                  </span>\r\n                </Tooltip>\r\n                <Tooltip disableInteractive title=\"Export structure tree\">\r\n                  <IconButton\r\n                    onClick={this.props.onExportParameters}\r\n                    size=\"large\"\r\n                  >\r\n                    <GetApp />\r\n                  </IconButton>\r\n                </Tooltip>\r\n                <Tooltip\r\n                  disableInteractive\r\n                  title={\r\n                    groupPermissions.canEditStructures\r\n                      ? \"Import structure tree\"\r\n                      : \"No Permission!\"\r\n                  }\r\n                >\r\n                  <span>\r\n                    <IconButton\r\n                      disabled={!groupPermissions.canEditStructures}\r\n                      onClick={() =>\r\n                        document.getElementById(\"selectFiles\").click()\r\n                      }\r\n                      size=\"large\"\r\n                    >\r\n                      <Publish />\r\n                    </IconButton>\r\n                  </span>\r\n                </Tooltip>\r\n              </Typography>\r\n              <input\r\n                type=\"file\"\r\n                id=\"selectFiles\"\r\n                style={{ position: \"absolute\", top: \"-150px\" }}\r\n                accept=\".json, .strhsa\"\r\n                onChange={this.props.onImportParameters}\r\n              />\r\n            </Grid>\r\n            <Grid\r\n              className={classes.flexRowRemainingHeight}\r\n              style={{\r\n                overflowY: \"hidden\",\r\n                display: \"grid\",\r\n                gridTemplateRows: \"1fr auto\",\r\n              }}\r\n            >\r\n              <Grid style={{ overflow: \"auto\" }}>\r\n                <List\r\n                  id=\"StructuresListContainer\"\r\n                  style={{\r\n                    overflowX: \"hidden\",\r\n                  }}\r\n                >\r\n                  {structures.map((structure, index) => (\r\n                    <div key={index + 600}>\r\n                      {this.isStructureAndShown(structure) && (\r\n                        <div\r\n                          ref={(el) => {\r\n                            this.structureRefs[index] = el;\r\n                          }}\r\n                          style={{\r\n                            height: 48,\r\n                            width: \"100%\",\r\n                          }}\r\n                        >\r\n                          {this.isInView(this.structureRefs[index]) && (\r\n                            <ListItemStructure\r\n                              {...propsWithoutClasses}\r\n                              key={structure.id}\r\n                              structure={structure}\r\n                              index={index}\r\n                              textInputRef={this.textInputRef}\r\n                              setTextInputRef={(el) => (this.textInputRef = el)}\r\n                              isAdmin={isAdmin}\r\n                              renderLocation={\"SideBarTabRois\"}\r\n                            />\r\n                          )}\r\n                        </div>\r\n                      )}\r\n\r\n                      {structure.showSubtypes &&\r\n                        !structure.isSubtype &&\r\n                        structures\r\n                          .filter((element) => this.isSubtypeAndShown(element))\r\n                          .map((subType, i) => (\r\n                            <ListItemSubType\r\n                              {...propsWithoutClasses}\r\n                              isInView={this.isInView}\r\n                              key={structure.id + \"-\" + subType.id}\r\n                              subType={subType}\r\n                              parent={structure}\r\n                              isAdmin={isAdmin}\r\n                              i={i}\r\n                              renderLocation={\"SideBarTabRois\"}\r\n                            />\r\n                          ))}\r\n                    </div>\r\n                  ))}\r\n\r\n                  {this.props.viewerConfig.project.dynamicStructure &&\r\n                    groupPermissions.canEditStructures && (\r\n                      <ListItem\r\n                        style={{\r\n                          paddingBottom: 0,\r\n                          paddingTop: 0,\r\n                          paddingLeft: 15,\r\n                          width: \"100%\",\r\n                          display: \"grid\",\r\n                          gridTemplateColumns: \"1fr auto\",\r\n                        }}\r\n                        key={500 + 400}\r\n                      >\r\n                        <TextField\r\n                          variant=\"standard\"\r\n                          name=\"Textfield\"\r\n                          style={{\r\n                            paddingBottom: 0,\r\n                            paddingTop: 0,\r\n                            paddingLeft: 0,\r\n                          }}\r\n                          value={dynamicStructureText}\r\n                          onChange={(e) =>\r\n                            this.setState({\r\n                              dynamicStructureText: e.target.value,\r\n                            })\r\n                          }\r\n                          onKeyDown={(e) => {\r\n                            if (e.key === \"Enter\") {\r\n                              this.addStructure();\r\n                            }\r\n                          }}\r\n                        />\r\n                        <Tooltip disableInteractive title=\"Add new structure\">\r\n                          <IconButton onClick={this.addStructure} size=\"large\">\r\n                            <Add />\r\n                          </IconButton>\r\n                        </Tooltip>\r\n                      </ListItem>\r\n                    )}\r\n                </List>\r\n\r\n                <List>\r\n                  {rois.map((roi, index) => (\r\n                    <ListItemButton\r\n                      key={index}\r\n                      onClick={() => this.props.onCenterROI(roi)}\r\n                      onMouseEnter={() => this.props.onHoverROI(roi, true)}\r\n                      onMouseLeave={() => this.props.onHoverROI(roi, false)}\r\n                    >\r\n                      <ListItemText\r\n                        primary={\"ROI \" + index}\r\n                        secondary={roi.summary()}\r\n                      />\r\n                    </ListItemButton>\r\n                  ))}\r\n                </List>\r\n              </Grid>\r\n\r\n              <Grid className={classes.spacing}>\r\n                <FormHelperText>Opacity:</FormHelperText>\r\n                <Slider\r\n                  style={{ width: \"calc(100% - 12px)\" }}\r\n                  min={0}\r\n                  max={180}\r\n                  value={this.props.opacity * 100}\r\n                  onChange={(event, newValue) =>\r\n                    this.props.onChangeOpacity(newValue / 100)\r\n                  }\r\n                />\r\n              </Grid>\r\n            </Grid>\r\n          </div>\r\n        )}\r\n      </Grid>\r\n    );\r\n  }\r\n}\r\n\r\n// define the component's interface\r\nSideBarTabRois.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  // sidebar tab properties\r\n  visible: PropTypes.bool,\r\n  isAdmin: PropTypes.bool,\r\n  // general properties\r\n  viewerConfig: PropTypes.object,\r\n  id: PropTypes.string.isRequired,\r\n  ome: PropTypes.object,\r\n  // roiLayers\r\n  roiLayers: PropTypes.array,\r\n  selectedLayer: PropTypes.number,\r\n  onSelectLayer: PropTypes.func,\r\n  deleteforAllScenes: PropTypes.func,\r\n  onCenterROI: PropTypes.func,\r\n  onHoverROI: PropTypes.func,\r\n  // tools\r\n  activeTool: PropTypes.string,\r\n  // opacity slider\r\n  opacity: PropTypes.number,\r\n  onChangeOpacity: PropTypes.func,\r\n  // Parameterset Export Import\r\n  onExportParameters: PropTypes.func,\r\n  onImportParameters: PropTypes.func,\r\n  // not ordered\r\n  structures: PropTypes.array,\r\n  projectContext: PropTypes.object,\r\n  rois: PropTypes.array,\r\n};\r\n\r\nexport default withTiles(\r\n  withAllViewerContexts(withStyles(styles)(SideBarTabRois))\r\n);\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport classNames from \"classnames\";\r\n\r\nimport withStyles from \"@mui/styles/withStyles\";\r\nimport { withAllViewerContexts } from \"../contexts/AllViewerContexts\";\r\nimport {\r\n  Grid,\r\n  Typography,\r\n  Tooltip,\r\n  Divider,\r\n  List,\r\n  IconButton,\r\n} from \"@mui/material\";\r\nimport RemoveCircleIcon from \"@mui/icons-material/RemoveCircle\";\r\nimport AddCircleIcon from \"@mui/icons-material/AddCircle\";\r\nimport Backend from \"../../common/utils/Backend\";\r\n\r\n// define the component's styling\r\nconst styles = () => ({\r\n  fileTreeView: {\r\n    width: \"100%\",\r\n    margin: 0,\r\n    background: \"#fff\",\r\n    position: \"relative\",\r\n  },\r\n  sidebarHandle: {\r\n    position: \"absolute\",\r\n    right: 0,\r\n    top: 0,\r\n    bottom: 0,\r\n    width: 5,\r\n    background: \"#EBEBEB\",\r\n    cursor: \"pointer\",\r\n    \"&:hover\": {\r\n      background: \"#0673C1\",\r\n    },\r\n  },\r\n  closeButton: {\r\n    position: \"absolute\",\r\n    right: 5,\r\n    top: 5,\r\n  },\r\n  expensionSummary: {\r\n    marginTop: 0,\r\n    marginBottom: 0,\r\n    background: \"#ff0000\",\r\n  },\r\n  labelWrap: {\r\n    paddingRight: 15,\r\n    width: \"100%\",\r\n    textOverflow: \"ellipsis\",\r\n    overflow: \"hidden\",\r\n    display: \"inline-block\",\r\n  },\r\n  previewImageContainer: {\r\n    position: \"relative\",\r\n  },\r\n  importText: {\r\n    padding: 5,\r\n    fontWeight: \"bold\",\r\n    lineHeight: \"45px\",\r\n    display: \"inline-block\",\r\n  },\r\n  lineThrough1: {\r\n    position: \"absolute\",\r\n    top: 0,\r\n    left: 0,\r\n    width: \"100%\",\r\n    height: \"100%\",\r\n    pointerEvents: \"none\",\r\n    background:\r\n      \"linear-gradient(to bottom right, transparent calc(50% - 1px), red, transparent calc(50% + 1px) )\",\r\n  },\r\n  lineThrough2: {\r\n    position: \"absolute\",\r\n    top: 0,\r\n    left: 0,\r\n    width: \"100%\",\r\n    height: \"100%\",\r\n    pointerEvents: \"none\",\r\n    background:\r\n      \"linear-gradient(to top right, transparent calc(50% - 1px), red, transparent calc(50% + 1px) )\",\r\n  },\r\n  previewImageNotSelected: {\r\n    border: \"1px solid #ccc\",\r\n  },\r\n  previewImageSelected: {\r\n    border: \"3px solid #0673C1!important\",\r\n  },\r\n  previewImageInSplitscreen: {\r\n    border: \"3px dashed #0673C1!important\",\r\n  },\r\n  fileItem: {\r\n    paddingTop: 10,\r\n    paddingBottom: 10,\r\n  },\r\n  sceneItem: {\r\n    position: \"relative\",\r\n    display: \"inline-block\",\r\n    width: \"fit-content\",\r\n    paddingLeft: \"5px\",\r\n    objectFit: \"contain\",\r\n    // border: \"1px solid #ccc!important\",\r\n    cursor: \"pointer\",\r\n    \"& button\": {\r\n      padding: 0,\r\n      visibility: \"hidden\",\r\n      zIndex: 999999,\r\n      width: 0,\r\n      height: 0,\r\n    },\r\n    \"&:hover\": {\r\n      boxShadow: \"1px 1px 2px #333\",\r\n      \"& button\": {\r\n        visibility: \"visible\",\r\n        zIndex: 999999999999,\r\n      },\r\n    },\r\n  },\r\n  divider: {\r\n    paddingLeft: 5,\r\n    paddingRight: 15,\r\n  },\r\n  filesList: {\r\n    height: \"calc(100vh - 480px)\",\r\n    overflowY: \"auto\",\r\n    overflowX: \"hidden\",\r\n  },\r\n  excludeAllContainer: {\r\n    position: \"absolute\",\r\n    top: 0,\r\n    right: 0,\r\n  },\r\n  excludeButton: {\r\n    position: \"absolute\",\r\n    top: 0,\r\n    right: 0,\r\n  },\r\n});\r\n\r\nclass FileTreeView extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n    this.overflowListRef = React.createRef(); // Create a ref object\r\n    this.state = {\r\n      missingThumbnails: {},\r\n      currentSceneFilterIdx: 0,\r\n    };\r\n    this.imageListItemRefs = [];\r\n  }\r\n\r\n  handleScroll = (e) => {\r\n    this.props.persistentStorage.save(\"files_scroll\", e.target.scrollTop);\r\n  };\r\n\r\n  setMountedState = (stateObject, callback) => {\r\n    if (this._isMounted) {\r\n      this.setState(stateObject, callback);\r\n    }\r\n  };\r\n\r\n  componentDidMount() {\r\n    this._isMounted = true;\r\n    this.overflowListRef.current.addEventListener(\"scroll\", this.handleScroll);\r\n\r\n    let scrollPosition = this.props.persistentStorage.load(\"files_scroll\"); //localStorage.getItem(scrollKey);\r\n    this.overflowListRef.current.scrollTo(0, scrollPosition);\r\n  }\r\n\r\n  componentWillUnmount() {\r\n    this._isMounted = false;\r\n    this.overflowListRef.current.removeEventListener(\r\n      \"scroll\",\r\n      this.handleScroll\r\n    );\r\n  }\r\n\r\n  hasNotExcludedScenes = (files) => {\r\n    const result = files.some((file) => !file.excludeScene);\r\n    return result;\r\n  };\r\n\r\n  isInView = (el) => {\r\n    if (\r\n      !this.imageList ||\r\n      this.imageList.getBoundingClientRect().height === 0\r\n    ) {\r\n      this.imageList = document.getElementById(\"SceneImageList\");\r\n      if (\r\n        this.imageList &&\r\n        this.imageList.getAttribute(\"listener\") !== \"true\"\r\n      ) {\r\n        this.imageList.addEventListener(\"scroll\", this.handleImageListScroll);\r\n      }\r\n    }\r\n    let result = false;\r\n    if (this.imageList && el) {\r\n      let parentTop = this.imageList.getBoundingClientRect().top;\r\n      let parentHeight = this.imageList.getBoundingClientRect().height;\r\n      let elTop = el.getBoundingClientRect().top;\r\n      let elHeight = el.getBoundingClientRect().height;\r\n\r\n      result = elTop + elHeight > parentTop && elTop < parentTop + parentHeight;\r\n    }\r\n    return result;\r\n  };\r\n\r\n  handleImageListScroll = () => {\r\n    this.forceUpdate();\r\n  };\r\n\r\n  render() {\r\n    const { currentSceneFilterIdx } = this.state;\r\n    const {\r\n      classes,\r\n      project,\r\n      onSelectFile,\r\n      fileId,\r\n      onExcludeFilesToggle,\r\n      splitscreenFileIds,\r\n      projectContext,\r\n    } = this.props;\r\n    const { fileGroups } = projectContext;\r\n\r\n    const fileNames = Object.keys(fileGroups).sort();\r\n    let selectedPath = \"\";\r\n    for (let scenes of Object.values(fileGroups)) {\r\n      for (let file of scenes) {\r\n        if (fileId === file.id) {\r\n          selectedPath = file.sourcePath;\r\n        }\r\n      }\r\n    }\r\n\r\n    let maxSceneIdx = 0;\r\n    for (let file of project.files) {\r\n      if (file.scene > maxSceneIdx) {\r\n        maxSceneIdx = file.scene;\r\n      }\r\n    }\r\n\r\n    return (\r\n      <Grid item className={classes.fileTreeView}>\r\n        {project && (\r\n          <Grid item xs={12}>\r\n            <Typography variant=\"h6\" style={{ fontSize: \"18px\" }}>\r\n              {\"Files (\" + fileNames.length + \"):\"}\r\n            </Typography>\r\n            <div className={classes.excludeAllContainer}>\r\n              {maxSceneIdx > 0 && (\r\n                <Tooltip\r\n                  title={\r\n                    \"Include only scene \" +\r\n                    (((currentSceneFilterIdx + 1) % (maxSceneIdx + 1)) + 1) +\r\n                    \" of each file!\"\r\n                  }\r\n                >\r\n                  <IconButton\r\n                    style={{ color: \"#757575\" }}\r\n                    size=\"small\"\r\n                    onClick={() => {\r\n                      const projectsToExclude = project.files.filter((file) => {\r\n                        return (\r\n                          file.scene === currentSceneFilterIdx &&\r\n                          file.excludeScene !== true\r\n                        );\r\n                      });\r\n                      const projectsToInclude = project.files.filter((file) => {\r\n                        return (\r\n                          file.scene !== currentSceneFilterIdx &&\r\n                          file.excludeScene === true\r\n                        );\r\n                      });\r\n                      onExcludeFilesToggle(projectsToExclude, true);\r\n                      onExcludeFilesToggle(projectsToInclude, false);\r\n                      if (maxSceneIdx > currentSceneFilterIdx) {\r\n                        this.setState({\r\n                          currentSceneFilterIdx: currentSceneFilterIdx + 1,\r\n                        });\r\n                      } else {\r\n                        this.setState({ currentSceneFilterIdx: 0 });\r\n                      }\r\n                    }}\r\n                  >\r\n                    <div\r\n                      style={{\r\n                        width: 20,\r\n                        height: 20,\r\n                        border: \"2px solid rgb(102, 102, 102)\",\r\n                        borderRadius: \"50%\",\r\n                        textAlign: \"center\",\r\n                        lineHeight: \"14px\",\r\n                        fontWeight: \"bold\",\r\n                      }}\r\n                    >\r\n                      {currentSceneFilterIdx + 1}\r\n                    </div>\r\n                  </IconButton>\r\n                </Tooltip>\r\n              )}\r\n\r\n              <Tooltip\r\n                disableInteractive\r\n                title={\r\n                  this.hasNotExcludedScenes(project.files)\r\n                    ? \"Exclude all from analysis\"\r\n                    : \"Include all to analysis\"\r\n                }\r\n              >\r\n                <IconButton\r\n                  style={{ color: \"#757575\" }}\r\n                  size=\"small\"\r\n                  onClick={() => {\r\n                    const toExclude = this.hasNotExcludedScenes(project.files);\r\n                    console.log(\"project.files:\", project.files);\r\n                    onExcludeFilesToggle(\r\n                      project.files.filter(\r\n                        (file) => file.excludeScene !== toExclude\r\n                      ),\r\n                      toExclude\r\n                    );\r\n                  }}\r\n                >\r\n                  {this.hasNotExcludedScenes(project.files) ? (\r\n                    <RemoveCircleIcon />\r\n                  ) : (\r\n                    <AddCircleIcon />\r\n                  )}\r\n                </IconButton>\r\n              </Tooltip>\r\n            </div>\r\n\r\n            <List\r\n              id={\"SceneImageList\"}\r\n              ref={this.overflowListRef}\r\n              className={classes.filesList}\r\n            >\r\n              {fileNames.map((fn, fn_index) => (\r\n                <React.Fragment key={fn_index}>\r\n                  <div\r\n                    ref={(el) => {\r\n                      if (!this.imageListItemRefs[fn_index]) {\r\n                        this.imageListItemRefs[fn_index] = el;\r\n                        this.forceUpdate();\r\n                      }\r\n                    }}\r\n                    className={classes.fileItem}\r\n                    style={{\r\n                      marginTop: fn_index === 0 && 0,\r\n                      background:\r\n                        fn === selectedPath ? \"rgba(0, 0, 0, 0.08)\" : \"none\",\r\n                    }}\r\n                  >\r\n                    {this.isInView(this.imageListItemRefs[fn_index]) ? (\r\n                      <React.Fragment>\r\n                        <Typography noWrap={true} className={classes.labelWrap}>\r\n                          {fileGroups[fn][0].fileName}\r\n                        </Typography>\r\n                        <div>\r\n                          {fileGroups[fn]\r\n                            .sort((a, b) => a.scene - b.scene)\r\n                            .map((sceneFile, f_id) => (\r\n                              <div\r\n                                key={f_id}\r\n                                className={classes.sceneItem}\r\n                                style={{\r\n                                  display: sceneFile.sceneName\r\n                                    ? \"block\"\r\n                                    : \"inline-block\",\r\n                                  margin: 10,\r\n                                  width: sceneFile.sceneName\r\n                                    ? \"inherit\"\r\n                                    : \"fit-content\",\r\n                                }}\r\n                              >\r\n                                <Tooltip\r\n                                  disableInteractive\r\n                                  placement=\"top\"\r\n                                  title={\r\n                                    !sceneFile.excludeScene\r\n                                      ? \"Exclude from analysis\"\r\n                                      : \"Include in analysis\"\r\n                                  }\r\n                                >\r\n                                  <IconButton\r\n                                    className={classes.excludeButton}\r\n                                    style={{ color: \"#757575\" }}\r\n                                    size=\"small\"\r\n                                    onClick={() =>\r\n                                      onExcludeFilesToggle(\r\n                                        [sceneFile],\r\n                                        !sceneFile.excludeScene\r\n                                      )\r\n                                    }\r\n                                  >\r\n                                    {!sceneFile.excludeScene ? (\r\n                                      <RemoveCircleIcon />\r\n                                    ) : (\r\n                                      <AddCircleIcon />\r\n                                    )}\r\n                                  </IconButton>\r\n                                </Tooltip>\r\n                                <Tooltip\r\n                                  disableInteractive\r\n                                  key={f_id}\r\n                                  title={\"Scene \" + (sceneFile.scene + 1)}\r\n                                >\r\n                                  <div\r\n                                    className={classes.previewImageContainer}\r\n                                    onClick={() => onSelectFile(sceneFile.id)}\r\n                                  >\r\n                                    <div\r\n                                      className={\r\n                                        classNames(\r\n                                          (fileId === sceneFile.id &&\r\n                                            classes.previewImageSelected) ||\r\n                                            (splitscreenFileIds.includes(\r\n                                              sceneFile.id\r\n                                            ) &&\r\n                                              classes.previewImageInSplitscreen)\r\n                                        ) ||\r\n                                        (fileId !== sceneFile.id &&\r\n                                          classes.previewImageNotSelected)\r\n                                      }\r\n                                    >\r\n                                      {this.state.missingThumbnails[\r\n                                        sceneFile.id\r\n                                      ] && (\r\n                                        <div className={classes.importText}>\r\n                                          import\r\n                                        </div>\r\n                                      )}\r\n                                      {sceneFile.sceneName ? (\r\n                                        <span>{sceneFile.sceneName}</span>\r\n                                      ) : (\r\n                                        <img\r\n                                          draggable=\"true\"\r\n                                          onDragStart={(e) => {\r\n                                            e.dataTransfer.setData(\r\n                                              \"text/plain\",\r\n                                              sceneFile.id\r\n                                            );\r\n                                          }}\r\n                                          className={classes.previewImage}\r\n                                          height=\"45\"\r\n                                          src={Backend.renderThumbnail(\r\n                                            sceneFile.id\r\n                                          )}\r\n                                          onError={() => {\r\n                                            let missingThumbnails =\r\n                                              this.state.missingThumbnails;\r\n                                            missingThumbnails[\r\n                                              sceneFile.id\r\n                                            ] = true;\r\n                                            this.setMountedState({\r\n                                              missingThumbnails:\r\n                                                missingThumbnails,\r\n                                            });\r\n                                          }}\r\n                                          alt=\"\"\r\n                                        />\r\n                                      )}\r\n                                    </div>\r\n                                    <div\r\n                                      style={{\r\n                                        display: !sceneFile.excludeScene\r\n                                          ? \"none\"\r\n                                          : \"block\",\r\n                                      }}\r\n                                      className={classes.lineThrough1}\r\n                                    ></div>\r\n                                    <div\r\n                                      style={{\r\n                                        display: !sceneFile.excludeScene\r\n                                          ? \"none\"\r\n                                          : \"block\",\r\n                                      }}\r\n                                      className={classes.lineThrough2}\r\n                                    ></div>\r\n                                  </div>\r\n                                </Tooltip>\r\n                              </div>\r\n                            ))}\r\n                        </div>\r\n                      </React.Fragment>\r\n                    ) : (\r\n                      <div style={{ height: 78 }}></div>\r\n                    )}\r\n                  </div>\r\n                  {fn_index < fileNames.length - 1 && (\r\n                    <Divider className={classes.divider} />\r\n                  )}\r\n                </React.Fragment>\r\n              ))}\r\n            </List>\r\n          </Grid>\r\n        )}\r\n      </Grid>\r\n    );\r\n  }\r\n}\r\n\r\n// define the component's interface\r\nFileTreeView.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  project: PropTypes.object,\r\n  onSelectFile: PropTypes.func,\r\n  onExcludeFilesToggle: PropTypes.func,\r\n  fileId: PropTypes.string,\r\n  splitscreenFileIds: PropTypes.array,\r\n  persistentStorage: PropTypes.object,\r\n  projectContext: PropTypes.object,\r\n};\r\n\r\nexport default withAllViewerContexts(withStyles(styles)(FileTreeView));\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport Histogram from \"../Histogram\";\r\nimport FileTreeView from \"../FileTreeView\";\r\n\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n\r\nimport { Grid, Typography } from \"@mui/material\";\r\n\r\nimport { withAllViewerContexts } from \"../../contexts/AllViewerContexts\";\r\nimport { withTiles } from \"../../contexts/TilesContext\";\r\nimport { withResultTab } from \"../../contexts/ResultTabContext\";\r\n\r\n// define the component's styling\r\nconst styles = () => ({\r\n  flexRowRemainingHeight: {\r\n    flex: \"1 1 auto\",\r\n    overflowY: \"auto\",\r\n  },\r\n  spacing: {\r\n    padding: 10,\r\n    paddingBottom: 0,\r\n    paddingTop: 0,\r\n  },\r\n  histogramContainer: {\r\n    minHeight: 280,\r\n  },\r\n});\r\n\r\nclass SideBarTabView extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n    this.state = {\r\n      activeTab: 0,\r\n      channelSelectMode: \"all\",\r\n      availableModels: [],\r\n      isMounted: false,\r\n    };\r\n  }\r\n\r\n  componentDidMount = () => {\r\n    this.setState({ isMounted: true });\r\n  };\r\n\r\n  changeChannelSelectMode = (mode) => {\r\n    this.setState({\r\n      channelSelectMode: mode,\r\n    });\r\n  };\r\n\r\n  checkToolInConfig(toolName) {\r\n    if (this.props.viewerConfig) {\r\n      if (this.props.viewerConfig.project.toolsInProject[toolName]) {\r\n        return true;\r\n      } else {\r\n        return false;\r\n      }\r\n    }\r\n  }\r\n\r\n  render() {\r\n    const {\r\n      classes,\r\n      fileId,\r\n      histogramConfig,\r\n      ome,\r\n      onChangeChannels,\r\n      onSelectFile,\r\n      onExcludeFilesToggle,\r\n      project,\r\n      projectContext,\r\n      sideBarWidth,\r\n      splitscreenFileIds,\r\n      tiles,\r\n      visible,\r\n    } = this.props;\r\n\r\n    if (!visible) return null;\r\n\r\n    return (\r\n      <Grid container className={classes.flexRowRemainingHeight}>\r\n        {histogramConfig[fileId] && (\r\n          <Grid className={classes.spacing} item xs={12}>\r\n            <Typography variant=\"h6\" style={{ fontSize: \"18px\" }}>\r\n              Histogram:\r\n            </Typography>\r\n            <div className={classes.histogramContainer}>\r\n              {this.props.ome && this.state.isMounted && (\r\n                <Histogram\r\n                  sideBarWidth={sideBarWidth}\r\n                  histogramConfig={histogramConfig[fileId]}\r\n                  bitDepth={ome.bitDepth}\r\n                  id={fileId}\r\n                  channelSelectMode={this.state.channelSelectMode}\r\n                  changeChannelSelectMode={this.changeChannelSelectMode}\r\n                  onChange={onChangeChannels}\r\n                  style={{ borderBottom: \"#EBEBEB solid\" }}\r\n                  projectType={project.type}\r\n                  projectContext={projectContext}\r\n                />\r\n              )}\r\n            </div>\r\n\r\n            {!tiles.getHistoClassificationStarted() && (\r\n              <FileTreeView\r\n                project={project}\r\n                fileId={fileId}\r\n                splitscreenFileIds={splitscreenFileIds}\r\n                onSelectFile={onSelectFile}\r\n                onExcludeFilesToggle={onExcludeFilesToggle}\r\n              />\r\n            )}\r\n          </Grid>\r\n        )}\r\n      </Grid>\r\n    );\r\n  }\r\n}\r\n\r\n// define the component's interface\r\nSideBarTabView.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  // sidebar tab properties\r\n  sideBarWidth: PropTypes.number,\r\n  visible: PropTypes.bool,\r\n  // general properties\r\n  id: PropTypes.string.isRequired,\r\n  viewerConfig: PropTypes.object,\r\n  // historgram\r\n  ome: PropTypes.object,\r\n  histogramConfig: PropTypes.object,\r\n  onChangeChannels: PropTypes.func,\r\n  // file management\r\n  onSelectFile: PropTypes.func,\r\n  onExcludeFilesToggle: PropTypes.func,\r\n  splitscreenFileIds: PropTypes.array,\r\n  // not ordered\r\n  fileId: PropTypes.string,\r\n  project: PropTypes.object,\r\n  projectContext: PropTypes.object,\r\n  tiles: PropTypes.object,\r\n  resultTab: PropTypes.object,\r\n};\r\n\r\nexport default withAllViewerContexts(\r\n  withTiles(withResultTab(withStyles(styles)(SideBarTabView)))\r\n);\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport { withAllViewerContexts } from \"../contexts/AllViewerContexts\";\r\nimport { withTiles } from \"../contexts/TilesContext\";\r\nimport { withResultTab } from \"../contexts/ResultTabContext\";\r\n\r\nimport {\r\n  Grid,\r\n  Typography,\r\n  Button,\r\n  Tooltip,\r\n  FormControl,\r\n  InputLabel,\r\n  Select,\r\n  MenuItem,\r\n} from \"@mui/material\";\r\n\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n\r\nconst styles = {};\r\n\r\nclass ScoringMatrixHistoClassification extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n\r\n    window.addFrequencyClass = this.addFrequencyClass;\r\n\r\n    this.store = this.props.persistentStorage;\r\n  }\r\n\r\n  componentDidMount = () => {};\r\n\r\n  componentDidUpdate() {}\r\n\r\n  UNSAFE_componentWillMount = () => {\r\n    // get all parent structures\r\n    const selSample = this.store.load(\"selLayerSample\");\r\n    if (selSample) {\r\n      this.props.onSelectLayer(selSample);\r\n      let selId = this.props.structures[selSample].id;\r\n\r\n      // get all parent structures\r\n      let parentStructures = this.props.structures.filter(\r\n        (element) => element.subtypeLevel === 0\r\n      );\r\n\r\n      // get Index of sample in parent structures\r\n      let parentIdxSelStructure = parentStructures.findIndex(\r\n        (element) => element.id === selId\r\n      );\r\n      this.props.resultTab.setSelectedStructure(parentIdxSelStructure);\r\n    }\r\n  };\r\n\r\n  findChilds = (subType) => {\r\n    const { structures } = this.props;\r\n    // return direct childs of structure\r\n    return structures.filter(\r\n      (element) =>\r\n        element.subtypeLevel === subType.subtypeLevel + 1 &&\r\n        element.parentId === subType.id\r\n    );\r\n  };\r\n\r\n  getAbbreviationOfStructure = (structure) => {\r\n    // get abbreviation of structure --> label [abbreviation]\r\n    let strWithBracket = structure.label.split(\"[\")[1];\r\n    if (!strWithBracket) {\r\n      strWithBracket = structure.label;\r\n    }\r\n    let abbreviation = strWithBracket.substring(0, strWithBracket.length - 1);\r\n    return abbreviation;\r\n  };\r\n\r\n  isCriticalOrSelected = (structure) => {\r\n    const { structures, selectedLayer } = this.props;\r\n    // check if structure is selected (color dark grey) or critical (color red)\r\n    let selectedChildIndex = this.props.resultTab.getSelectedChildIndex();\r\n    if (this.isStructureCritical(structure)) {\r\n      // if structure has critical value\r\n      return \"#ff0000\";\r\n    } else if (\r\n      structure.id === structures[selectedLayer + selectedChildIndex].id\r\n    ) {\r\n      // if structure is selected\r\n      return \"#d8d8d8\";\r\n    } else {\r\n      return \"#ffffff\";\r\n    }\r\n  };\r\n\r\n  isStructureCritical = (structure) => {\r\n    const { selectedLayer, roiLayers, project } = this.props;\r\n    // calculate arithmetic mean (look at specifications)\r\n    let numberTiles =\r\n      project.files.length * roiLayers[selectedLayer].layer.regionRois.length;\r\n\r\n    let totalClassFrequencies = 0;\r\n    let idx = 0;\r\n    for (const [key, value] of Object.entries(structure.classFrequencies)) {\r\n      if (key !== \"class_0\") {\r\n        totalClassFrequencies = totalClassFrequencies + value * idx;\r\n      }\r\n      idx = idx + 1;\r\n    }\r\n\r\n    let mean = Math.round(totalClassFrequencies / numberTiles);\r\n    this.setAvgClassFrequ(structure, mean);\r\n\r\n    // if mean is greater or equal than critical class of structure return true\r\n    if (mean >= structure.criticalClass && structure.criticalClass !== 0) {\r\n      return true;\r\n    } else {\r\n      return false;\r\n    }\r\n  };\r\n\r\n  setAvgClassFrequ = (structure, mean) => {\r\n    // set average frequency class\r\n    if (!Number.isNaN(mean) && mean !== null) {\r\n      structure.avgClassFrequency = mean;\r\n    }\r\n  };\r\n\r\n  subtractFrequencyClass = (x) => {\r\n    const { structures, selectedLayer } = this.props;\r\n    // subtract frequency class (is structure gert reclassified)\r\n\r\n    let selectedChildIndex = this.props.resultTab.getSelectedChildIndex();\r\n    let selectedStructure = selectedLayer + selectedChildIndex;\r\n\r\n    switch (x) {\r\n      case 0:\r\n        structures[selectedStructure].classFrequencies.class_0 =\r\n          structures[selectedStructure].classFrequencies.class_0 - 1;\r\n        break;\r\n      case 1:\r\n        structures[selectedStructure].classFrequencies.class_1 =\r\n          structures[selectedStructure].classFrequencies.class_1 - 1;\r\n        break;\r\n      case 2:\r\n        structures[selectedStructure].classFrequencies.class_2 =\r\n          structures[selectedStructure].classFrequencies.class_2 - 1;\r\n        break;\r\n      case 3:\r\n        structures[selectedStructure].classFrequencies.class_3 =\r\n          structures[selectedStructure].classFrequencies.class_3 - 1;\r\n        break;\r\n      case 4:\r\n        structures[selectedStructure].classFrequencies.class_4 =\r\n          structures[selectedStructure].classFrequencies.class_4 - 1;\r\n        break;\r\n      case 5:\r\n        structures[selectedStructure].classFrequencies.class_5 =\r\n          structures[selectedStructure].classFrequencies.class_5 - 1;\r\n        break;\r\n      case 6:\r\n        structures[selectedStructure].classFrequencies.class_6 =\r\n          structures[selectedStructure].classFrequencies.class_6 - 1;\r\n        break;\r\n      default:\r\n    }\r\n  };\r\n\r\n  addFrequencyClass = (x) => {\r\n    const { structures, selectedLayer, roiLayers, selectedRoi } = this.props;\r\n    // add frequency class when classifying tile\r\n\r\n    let selectedChildIndex = this.props.resultTab.getSelectedChildIndex();\r\n\r\n    // if not started no classification possible\r\n    if (!this.props.tiles.getHistoClassificationStarted()) {\r\n      window.showWarningSnackbar(\"Please click 'RUN' to classify.\");\r\n      return;\r\n    }\r\n\r\n    // if no grid\r\n    if (roiLayers[selectedLayer].layer.regionRois.length === 0) {\r\n      window.showWarningSnackbar(\"Please create a grid before annotating\");\r\n      this.props.onChangeTool(\"gridtool\");\r\n      return;\r\n    }\r\n\r\n    /*// zoomLevel is not fixed yet\r\n    if (!this.props.zoomLevelFixed) {\r\n      window.showWarningSnackbar(\"Plese fix zoom level before annotating\");\r\n      return;\r\n    }*/\r\n\r\n    let selectedStructure = selectedLayer + selectedChildIndex;\r\n\r\n    // check if tile was classified before\r\n    let fClass =\r\n      roiLayers[selectedStructure].layer.regionRois[selectedRoi].frequencyClass;\r\n    if (fClass !== -1) {\r\n      // if tile was classified before undo previous classification\r\n      this.subtractFrequencyClass(fClass);\r\n    }\r\n\r\n    switch (x) {\r\n      case 0:\r\n        structures[selectedStructure].classFrequencies.class_0 =\r\n          structures[selectedStructure].classFrequencies.class_0 + 1;\r\n        break;\r\n      case 1:\r\n        structures[selectedStructure].classFrequencies.class_1 =\r\n          structures[selectedStructure].classFrequencies.class_1 + 1;\r\n        break;\r\n      case 2:\r\n        structures[selectedStructure].classFrequencies.class_2 =\r\n          structures[selectedStructure].classFrequencies.class_2 + 1;\r\n        break;\r\n      case 3:\r\n        structures[selectedStructure].classFrequencies.class_3 =\r\n          structures[selectedStructure].classFrequencies.class_3 + 1;\r\n        break;\r\n      case 4:\r\n        structures[selectedStructure].classFrequencies.class_4 =\r\n          structures[selectedStructure].classFrequencies.class_4 + 1;\r\n        break;\r\n      case 5:\r\n        structures[selectedStructure].classFrequencies.class_5 =\r\n          structures[selectedStructure].classFrequencies.class_5 + 1;\r\n        break;\r\n      case 6:\r\n        structures[selectedStructure].classFrequencies.class_6 =\r\n          structures[selectedStructure].classFrequencies.class_6 + 1;\r\n        break;\r\n      default:\r\n    }\r\n\r\n    // assign frequencyClass to tile\r\n    roiLayers[selectedStructure].layer.regionRois[\r\n      this.props.selectedRoi\r\n    ].frequencyClass = x;\r\n\r\n    if (\r\n      selectedChildIndex < this.findChilds(structures[selectedLayer]).length\r\n    ) {\r\n      // not last substructure of tile\r\n      let newSelChildIdx = selectedChildIndex + 1;\r\n      this.props.resultTab.setSelectedChildIndex(newSelChildIdx);\r\n    } else {\r\n      // last substructure of tile\r\n      this.props.resultTab.setSelectedChildIndex(1);\r\n    }\r\n\r\n    if (\r\n      structures[selectedStructure] &&\r\n      this.isStructureCritical(structures[selectedStructure]) &&\r\n      !structures[selectedStructure].warningWasShown\r\n    ) {\r\n      // show warning that sample is critical\r\n      let warningStr =\r\n        \"Histologische Beurteilung auffällig (\" +\r\n        structures[selectedStructure].label +\r\n        \" reached average class \" +\r\n        structures[selectedStructure].criticalClass +\r\n        \").\";\r\n\r\n      window.showErrorSnackbar(warningStr);\r\n      structures[selectedStructure].warningWasShown = true;\r\n    }\r\n\r\n    this.forceUpdate();\r\n  };\r\n\r\n  handleChangeSelectedStructure = (e) => {\r\n    // get all parent structures\r\n    let parentStructures = this.props.structures.filter(\r\n      (element) => element.subtypeLevel === 0\r\n    );\r\n\r\n    const idxNewSelectedStructure = this.props.structures.findIndex(\r\n      (element) => element.id === parentStructures[e.target.value].id\r\n    );\r\n\r\n    if (idxNewSelectedStructure >= 0) {\r\n      this.props.onSelectLayer(idxNewSelectedStructure);\r\n    }\r\n\r\n    this.props.resultTab.setSelectedChildIndex(1);\r\n    this.props.resultTab.setSelectedStructure(e.target.value);\r\n\r\n    // reset structures\r\n    this.props.resetStructures(true);\r\n\r\n    // save selectedLayer in local storage\r\n    this.store.save(\"selLayerSample\", idxNewSelectedStructure);\r\n  };\r\n\r\n  selectRow = (structure) => {\r\n    const { structures, selectedLayer } = this.props;\r\n    // select row which was clicked\r\n    // get childindex of selected structure\r\n    let childIdx = this.findChilds(structures[selectedLayer]).findIndex(\r\n      (element) => element.id === structure.id\r\n    );\r\n    this.props.resultTab.setSelectedChildIndex(childIdx + 1);\r\n    this.forceUpdate();\r\n  };\r\n\r\n  renderSubtypeRow = (structure, idx) => {\r\n    const { structures, roiLayers } = this.props;\r\n\r\n    // if it is critical make row red\r\n    let backgroundColor = this.isCriticalOrSelected(structure);\r\n\r\n    // get frequencyClass of selected Tile for row\r\n    let structureIndex = structures.findIndex(\r\n      (element) => element.id === structure.id\r\n    );\r\n    let rowFrequencyClass = 0;\r\n    if (\r\n      structureIndex > -1 &&\r\n      roiLayers[structureIndex].layer.regionRois.length > 0 &&\r\n      roiLayers[structureIndex].layer.regionRois[this.props.selectedRoi]\r\n    ) {\r\n      rowFrequencyClass =\r\n        roiLayers[structureIndex].layer.regionRois[this.props.selectedRoi]\r\n          .frequencyClass;\r\n    }\r\n\r\n    if (!structure.avgClassFrequency) {\r\n      structure.avgClassFrequency = 0;\r\n    }\r\n\r\n    return (\r\n      <Grid\r\n        key={idx}\r\n        container\r\n        spacing={0}\r\n        style={{\r\n          background: backgroundColor,\r\n        }}\r\n        onClick={() => this.selectRow(structure)}\r\n      >\r\n        <Grid item xs>\r\n          <Tooltip disableInteractive title={structure.label}>\r\n            <Typography>\r\n              {this.getAbbreviationOfStructure(structure)}\r\n            </Typography>\r\n          </Tooltip>\r\n        </Grid>\r\n        <Grid item xs>\r\n          <Typography\r\n            style={{\r\n              background:\r\n                (rowFrequencyClass === 0 || rowFrequencyClass === -1) &&\r\n                \"#A4A4A4\",\r\n              textAlign: \"center\",\r\n            }}\r\n          >\r\n            {structure.classFrequencies.class_0}\r\n          </Typography>\r\n        </Grid>\r\n        <Grid item xs>\r\n          <Typography\r\n            style={{\r\n              background: rowFrequencyClass === 1 && \"#A4A4A4\",\r\n              textAlign: \"center\",\r\n            }}\r\n          >\r\n            {structure.classFrequencies.class_1}\r\n          </Typography>\r\n        </Grid>\r\n        <Grid item xs>\r\n          <Typography\r\n            style={{\r\n              background: rowFrequencyClass === 2 && \"#A4A4A4\",\r\n              textAlign: \"center\",\r\n            }}\r\n          >\r\n            {structure.classFrequencies.class_2}\r\n          </Typography>\r\n        </Grid>\r\n        <Grid item xs>\r\n          <Typography\r\n            style={{\r\n              background: rowFrequencyClass === 3 && \"#A4A4A4\",\r\n              textAlign: \"center\",\r\n            }}\r\n          >\r\n            {structure.classFrequencies.class_3}\r\n          </Typography>\r\n        </Grid>\r\n        <Grid item xs>\r\n          <Typography\r\n            style={{\r\n              background: rowFrequencyClass === 4 && \"#A4A4A4\",\r\n              textAlign: \"center\",\r\n            }}\r\n          >\r\n            {structure.classFrequencies.class_4}\r\n          </Typography>\r\n        </Grid>\r\n        <Grid item xs>\r\n          <Typography\r\n            style={{\r\n              background: rowFrequencyClass === 5 && \"#A4A4A4\",\r\n              textAlign: \"center\",\r\n            }}\r\n          >\r\n            {structure.classFrequencies.class_5}\r\n          </Typography>\r\n        </Grid>\r\n        <Grid item xs>\r\n          <Typography\r\n            style={{\r\n              background: rowFrequencyClass === 6 && \"#A4A4A4\",\r\n              textAlign: \"center\",\r\n            }}\r\n          >\r\n            {structure.classFrequencies.class_6}\r\n          </Typography>\r\n        </Grid>\r\n        <Grid item xs={1}>\r\n          <Typography\r\n            style={{\r\n              textAlign: \"center\",\r\n            }}\r\n          >\r\n            {structure.avgClassFrequency}\r\n          </Typography>\r\n        </Grid>\r\n      </Grid>\r\n    );\r\n  };\r\n\r\n  renderFrequencyClasses = () => {\r\n    return (\r\n      <Grid container spacing={0}>\r\n        <Grid item xs>\r\n          <Typography\r\n            style={{\r\n              textAlign: \"center\",\r\n              color: \"#ffffff\",\r\n            }}\r\n          >\r\n            0\r\n          </Typography>\r\n          <Typography\r\n            style={{\r\n              background: \"#ffffff\",\r\n              color: \"#ffffff\",\r\n              textAlign: \"center\",\r\n            }}\r\n          >\r\n            0\r\n          </Typography>\r\n        </Grid>\r\n        <Grid item xs>\r\n          <Typography\r\n            style={{\r\n              textAlign: \"center\",\r\n              color: \"#ffffff\",\r\n            }}\r\n          >\r\n            0\r\n          </Typography>\r\n          <Tooltip\r\n            disableInteractive\r\n            title=\"Classify with key [0]\"\r\n            placement=\"top\"\r\n          >\r\n            <Button\r\n              style={{\r\n                background: \"#ffffff\",\r\n                textAlign: \"center\",\r\n                width: \"100%\",\r\n              }}\r\n              onClick={() => this.addFrequencyClass(0)}\r\n            >\r\n              0\r\n            </Button>\r\n          </Tooltip>\r\n        </Grid>\r\n        <Grid item xs>\r\n          <Typography\r\n            style={{\r\n              textAlign: \"center\",\r\n              width: \"100%\",\r\n            }}\r\n          >\r\n            1x\r\n          </Typography>\r\n          <Tooltip\r\n            disableInteractive\r\n            title=\"Classify with key [1]\"\r\n            placement=\"top\"\r\n          >\r\n            <Button\r\n              style={{\r\n                background: \"#d9eeff\",\r\n                textAlign: \"center\",\r\n                width: \"100%\",\r\n              }}\r\n              onClick={() => this.addFrequencyClass(1)}\r\n            >\r\n              1\r\n            </Button>\r\n          </Tooltip>\r\n        </Grid>\r\n        <Grid item xs>\r\n          <Typography\r\n            style={{\r\n              textAlign: \"center\",\r\n              width: \"100%\",\r\n            }}\r\n          >\r\n            {\"<5%\"}\r\n          </Typography>\r\n          <Tooltip\r\n            disableInteractive\r\n            title=\"Classify with key [2]\"\r\n            placement=\"top\"\r\n          >\r\n            <Button\r\n              style={{\r\n                background: \"#b9dfff\",\r\n                textAlign: \"center\",\r\n                width: \"100%\",\r\n              }}\r\n              onClick={() => this.addFrequencyClass(2)}\r\n            >\r\n              2\r\n            </Button>\r\n          </Tooltip>\r\n        </Grid>\r\n        <Grid item xs>\r\n          <Typography\r\n            style={{\r\n              textAlign: \"center\",\r\n              width: \"100%\",\r\n            }}\r\n          >\r\n            5-20%\r\n          </Typography>\r\n          <Tooltip\r\n            disableInteractive\r\n            title=\"Classify with key [3]\"\r\n            placement=\"top\"\r\n          >\r\n            <Button\r\n              style={{\r\n                background: \"#9fd4ff\",\r\n                textAlign: \"center\",\r\n                width: \"100%\",\r\n              }}\r\n              onClick={() => this.addFrequencyClass(3)}\r\n            >\r\n              3\r\n            </Button>\r\n          </Tooltip>\r\n        </Grid>\r\n        <Grid item xs>\r\n          <Typography\r\n            style={{\r\n              textAlign: \"center\",\r\n              width: \"100%\",\r\n            }}\r\n          >\r\n            20-35%\r\n          </Typography>\r\n          <Tooltip\r\n            disableInteractive\r\n            title=\"Classify with key [4]\"\r\n            placement=\"top\"\r\n          >\r\n            <Button\r\n              style={{\r\n                background: \"#79c2ff\",\r\n                textAlign: \"center\",\r\n                width: \"100%\",\r\n              }}\r\n              onClick={() => this.addFrequencyClass(4)}\r\n            >\r\n              4\r\n            </Button>\r\n          </Tooltip>\r\n        </Grid>\r\n        <Grid item xs>\r\n          <Typography\r\n            style={{\r\n              textAlign: \"center\",\r\n              width: \"100%\",\r\n            }}\r\n          >\r\n            35-50%\r\n          </Typography>\r\n          <Tooltip\r\n            disableInteractive\r\n            title=\"Classify with key [5]\"\r\n            placement=\"top\"\r\n          >\r\n            <Button\r\n              style={{\r\n                background: \"#5db6ff\",\r\n                textAlign: \"center\",\r\n                width: \"100%\",\r\n              }}\r\n              onClick={() => this.addFrequencyClass(5)}\r\n            >\r\n              5\r\n            </Button>\r\n          </Tooltip>\r\n        </Grid>\r\n        <Grid item xs>\r\n          <Typography\r\n            style={{\r\n              textAlign: \"center\",\r\n              width: \"100%\",\r\n            }}\r\n          >\r\n            {\">50%\"}\r\n          </Typography>\r\n          <Tooltip\r\n            disableInteractive\r\n            title=\"Classify with key [6]\"\r\n            placement=\"top\"\r\n          >\r\n            <Button\r\n              style={{\r\n                background: \"#37a5ff\",\r\n                textAlign: \"center\",\r\n                width: \"100%\",\r\n              }}\r\n              onClick={() => this.addFrequencyClass(6)}\r\n            >\r\n              6\r\n            </Button>\r\n          </Tooltip>\r\n        </Grid>\r\n        <Grid item xs={1}>\r\n          <Typography\r\n            style={{\r\n              textAlign: \"center\",\r\n              color: \"#ffffff\",\r\n            }}\r\n          >\r\n            Ø\r\n          </Typography>\r\n          <Tooltip\r\n            disableInteractive\r\n            title=\"Average frequency class\"\r\n            placement=\"top\"\r\n          >\r\n            <Typography\r\n              style={{\r\n                background: \"#ffffff\",\r\n                textAlign: \"center\",\r\n                width: \"100%\",\r\n                marginTop: \"7px\",\r\n              }}\r\n            >\r\n              Ø\r\n            </Typography>\r\n          </Tooltip>\r\n        </Grid>\r\n      </Grid>\r\n    );\r\n  };\r\n\r\n  isSelSampleSet = () => {\r\n    // disable dropdown if sample is set and classification started\r\n    const dropdownDisabled = this.props.tiles.getHistoClassificationStarted();\r\n    return dropdownDisabled;\r\n  };\r\n\r\n  render() {\r\n    const { structures, selectedLayer } = this.props;\r\n    return (\r\n      <div>\r\n        <FormControl>\r\n          <InputLabel>Sample</InputLabel>\r\n          <Select\r\n            name=\"SelectSample\"\r\n            label=\"Sample\"\r\n            variant=\"standard\"\r\n            value={this.props.resultTab.getSelectedStructure()}\r\n            onChange={this.handleChangeSelectedStructure}\r\n            disabled={this.isSelSampleSet()}\r\n          >\r\n            {this.props.structures\r\n              .filter((element) => element.subtypeLevel === 0)\r\n              .map((structure, idx) => (\r\n                <MenuItem key={idx} value={idx}>\r\n                  {structure.label}\r\n                </MenuItem>\r\n              ))}\r\n          </Select>\r\n        </FormControl>\r\n        <div style={{ overflowX: \"auto\" }}>\r\n          <div style={{ minWidth: \"550px\" }}>\r\n            {this.renderFrequencyClasses()}\r\n            {this.findChilds(structures[selectedLayer]).map((structure, idx) =>\r\n              this.renderSubtypeRow(structure, idx)\r\n            )}\r\n          </div>\r\n        </div>\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\n// define the component's interface\r\nScoringMatrixHistoClassification.propTypes = {\r\n  persistentStorage: PropTypes.object,\r\n  structures: PropTypes.array,\r\n  roiLayers: PropTypes.array,\r\n  resultTab: PropTypes.object,\r\n  onSelectLayer: PropTypes.func,\r\n  selectedLayer: PropTypes.number,\r\n  project: PropTypes.object,\r\n  selectedRoi: PropTypes.number,\r\n  tiles: PropTypes.object,\r\n  onChangeTool: PropTypes.func,\r\n  resetStructures: PropTypes.func,\r\n};\r\n\r\nexport default withAllViewerContexts(\r\n  withTiles(withResultTab(withStyles(styles)(ScoringMatrixHistoClassification)))\r\n);\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport { withAllViewerContexts } from \"../contexts/AllViewerContexts\";\r\nimport { withTiles } from \"../contexts/TilesContext\";\r\nimport { withResultTab } from \"../contexts/ResultTabContext\";\r\n\r\nimport {\r\n  Grid,\r\n  Typography,\r\n  Tooltip,\r\n  FormControl,\r\n  InputLabel,\r\n  Select,\r\n  MenuItem,\r\n  IconButton,\r\n} from \"@mui/material\";\r\n\r\nimport { Add } from \"@mui/icons-material\";\r\n\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n\r\nconst styles = {};\r\n\r\nclass ScoringMatrixHistoPointCounting extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n\r\n    window.addFrequencyClass = this.addFrequencyClass;\r\n    window.classifyTileWithkey = this.classifyTileWithkey;\r\n\r\n    this.store = this.props.persistentStorage;\r\n    this.canCallClassifyTileWithKey = true;\r\n  }\r\n\r\n  componentDidMount = () => {};\r\n\r\n  componentDidUpdate() {}\r\n\r\n  UNSAFE_componentWillMount = () => {\r\n    // get all parent structures\r\n    let selSample = this.store.load(\"selLayerSample\");\r\n    if (selSample) {\r\n      this.props.onSelectLayer(selSample);\r\n      let selId = this.props.structures[selSample].id;\r\n\r\n      // get all parent structures\r\n      let parentStructures = this.props.structures.filter(\r\n        (element) => element.subtypeLevel === 0\r\n      );\r\n\r\n      // get Index of sample in parent structures\r\n      let parentIdxSelStructure = parentStructures.findIndex(\r\n        (element) => element.id === selId\r\n      );\r\n      this.props.resultTab.setSelectedStructure(parentIdxSelStructure);\r\n    }\r\n  };\r\n\r\n  findChilds = (subType) => {\r\n    const { structures } = this.props;\r\n    // return direct childs of structure\r\n    return structures.filter(\r\n      (element) =>\r\n        element.subtypeLevel === subType.subtypeLevel + 1 &&\r\n        element.parentId === subType.id\r\n    );\r\n  };\r\n\r\n  getAbbreviationOfStructure = (structure) => {\r\n    // get abbreviation of structure --> label [abbreviation]\r\n    let strWithBracket = structure.label.split(\"[\")[1];\r\n    if (!strWithBracket) {\r\n      strWithBracket = structure.label;\r\n    }\r\n    let abbreviation = strWithBracket.substring(0, strWithBracket.length - 1);\r\n    return abbreviation;\r\n  };\r\n\r\n  handleChangeSelectedStructure = (e) => {\r\n    const { resultTab } = this.props;\r\n    // get all parent structures\r\n    const parentStructures = this.props.structures.filter(\r\n      (element) => element.subtypeLevel === 0\r\n    );\r\n\r\n    const idxNewSelectedStructure = this.props.structures.findIndex(\r\n      (element) => element.id === parentStructures[e.target.value].id\r\n    );\r\n\r\n    if (idxNewSelectedStructure >= 0) {\r\n      this.props.onSelectLayer(idxNewSelectedStructure);\r\n    }\r\n\r\n    resultTab.setSelectedChildIndex(1);\r\n    resultTab.setSelectedStructure(e.target.value);\r\n\r\n    // reset structures\r\n    this.props.resetStructures(true);\r\n\r\n    // save selectedLayer in local storage\r\n    this.store.save(\"selLayerSample\", idxNewSelectedStructure);\r\n  };\r\n\r\n  getCount = (structure) => {\r\n    const { roiLayers, selectedLayer } = this.props;\r\n    // calculate number of rois in parent layer\r\n    const numberRois = roiLayers[selectedLayer].layer.regionRois.filter(\r\n      (roi) => roi.structureId === structure.id\r\n    ).length;\r\n\r\n    return numberRois;\r\n  };\r\n\r\n  blockClassifyTile = (structure) => {\r\n    const { roiLayers, selectedLayer, resultTab, tiles, onChangeTool } =\r\n      this.props;\r\n    const selectedRoi = resultTab.getSelectedRoi();\r\n\r\n    // if file is changing no classification is possible for a few seconds\r\n    if (resultTab.getFileChange()) return true;\r\n\r\n    // if not started no classification is possible\r\n    if (!tiles.getHistoClassificationStarted()) {\r\n      window.showWarningSnackbar(\"Please click 'RUN' to classify.\");\r\n      return true;\r\n    }\r\n\r\n    // if no grid no classification is possible\r\n    if (roiLayers[selectedLayer].layer.regionRois.length === 0) {\r\n      window.showWarningSnackbar(\"Please create a grid before annotating\");\r\n      onChangeTool(\"gridtool\");\r\n      return true;\r\n    }\r\n\r\n    // do not classify empty structure if 100 already reached\r\n    if (\r\n      resultTab.getHundredTiles() &&\r\n      structure.label !== \"leer [leer]\" &&\r\n      roiLayers[selectedLayer].layer.regionRois[selectedRoi].subtypeName ===\r\n        \"leer [leer]\"\r\n    ) {\r\n      window.showWarningSnackbar(\"Finished!\");\r\n      return true;\r\n    }\r\n\r\n    return false;\r\n  };\r\n\r\n  classifyTile = (structure) => {\r\n    if (this.blockClassifyTile(structure)) return;\r\n\r\n    const { roiLayers, selectedLayer, resultTab } = this.props;\r\n    const selectedRoi = resultTab.getSelectedRoi();\r\n\r\n    // classify tile --> set roi properties\r\n    roiLayers[selectedLayer].layer.regionRois[selectedRoi].structureId =\r\n      structure.id;\r\n    roiLayers[selectedLayer].layer.regionRois[selectedRoi].subtypeName =\r\n      structure.label;\r\n    roiLayers[selectedLayer].layer.regionRois[selectedRoi].color =\r\n      structure.color;\r\n    roiLayers[selectedLayer].layer.regionRois[selectedRoi].isSubtype = true;\r\n    roiLayers[selectedLayer].layer.regionRois[selectedRoi].isAnnotated = true;\r\n    roiLayers[selectedLayer].layer.regionRois[selectedRoi].isLabeled = true;\r\n\r\n    //this.criticalValueReached();\r\n    // set hundret tiles to true only if from classification button\r\n    this.getTotalCount();\r\n    this.props.onNext();\r\n    this.forceUpdate();\r\n  };\r\n\r\n  classifyTileWithkey = (keyNumber) => {\r\n    if (keyNumber > 0 && this.canCallClassifyTileWithKey) {\r\n      const { structures, selectedLayer } = this.props;\r\n      // classification with key shortcut\r\n      let childs = this.findChilds(structures[selectedLayer]);\r\n\r\n      if (childs[keyNumber - 1]) {\r\n        let structureForClassification = childs[keyNumber - 1];\r\n        this.classifyTile(structureForClassification);\r\n        this.canCallClassifyTileWithKey = false;\r\n        setTimeout(() => {\r\n          this.canCallClassifyTileWithKey = true;\r\n        }, 100); // re-enable the call after 0.1 seconds\r\n      }\r\n    }\r\n  };\r\n\r\n  isTileClassified = (structure) => {\r\n    const { roiLayers, selectedLayer } = this.props;\r\n    // color structure in dark grey if selected tile was classified with structure\r\n\r\n    // if no grid return\r\n    if (roiLayers[selectedLayer].layer.regionRois.length === 0) {\r\n      return;\r\n    }\r\n\r\n    // check if selected tile has class of structure\r\n    let selectedRoi = this.props.resultTab.getSelectedRoi();\r\n    let tileHasStructureClass =\r\n      roiLayers[selectedLayer].layer.regionRois[selectedRoi].structureId ===\r\n      structure.id;\r\n\r\n    // if tile has no classification yet\r\n    if (structure.label === \"leer [leer]\" && !tileHasStructureClass) {\r\n      tileHasStructureClass =\r\n        roiLayers[selectedLayer].layer.regionRois[selectedRoi].structureId ===\r\n        0;\r\n    }\r\n\r\n    if (tileHasStructureClass && !this.props.showGallery) {\r\n      return \"#d8d8d8\";\r\n    } else {\r\n      return \"#FFFFFF\";\r\n    }\r\n  };\r\n\r\n  renderSubtypeRow = (structure, indexSubtype) => {\r\n    // check if selected tile is classified with this structure\r\n    let backgroundColor = this.isTileClassified(structure);\r\n\r\n    return (\r\n      <Grid\r\n        key={indexSubtype}\r\n        container\r\n        spacing={0}\r\n        style={{\r\n          background: backgroundColor,\r\n        }}\r\n      >\r\n        <Grid item xs>\r\n          <Tooltip disableInteractive title={structure.label}>\r\n            <Typography>\r\n              {this.getAbbreviationOfStructure(structure)}\r\n            </Typography>\r\n          </Tooltip>\r\n        </Grid>\r\n        <Grid item xs>\r\n          <Typography\r\n            style={{\r\n              marginLeft: \"20px\",\r\n              color: structure.label === \"leer [leer]\" && backgroundColor,\r\n            }}\r\n          >\r\n            {this.getCount(structure)}\r\n          </Typography>\r\n        </Grid>\r\n        <Grid item xs>\r\n          <Tooltip\r\n            disableInteractive\r\n            title={\r\n              indexSubtype < 9\r\n                ? \"Shortcut key: [\" + (indexSubtype + 1) + \"]\"\r\n                : \"\"\r\n            }\r\n          >\r\n            <IconButton\r\n              style={{ marginLeft: \"32px\" }}\r\n              onClick={() => this.classifyTile(structure)}\r\n              size=\"large\"\r\n            >\r\n              <Add />\r\n            </IconButton>\r\n          </Tooltip>\r\n        </Grid>\r\n      </Grid>\r\n    );\r\n  };\r\n\r\n  getTotalCount = (fromRendering) => {\r\n    const { structures, roiLayers, selectedLayer, resultTab } = this.props;\r\n\r\n    // get id of \"leer\" child\r\n    let emptyId = 0;\r\n    this.findChilds(structures[selectedLayer]).forEach((child) => {\r\n      if (child.label === \"leer [leer]\") {\r\n        emptyId = child.id;\r\n      }\r\n    });\r\n\r\n    // get number of rois that are not of class \"leer\"\r\n    const numberRois = roiLayers[selectedLayer].layer.regionRois.filter(\r\n      (roi) => roi.isAnnotated && roi.structureId !== emptyId\r\n    ).length;\r\n\r\n    if (numberRois >= 100 && !fromRendering) {\r\n      resultTab.setHundredTiles(true);\r\n    }\r\n\r\n    return numberRois;\r\n  };\r\n\r\n  renderMatrixBottom = () => {\r\n    return (\r\n      <Grid container spacing={0}>\r\n        <Grid item xs>\r\n          <Typography>Total</Typography>\r\n        </Grid>\r\n        <Grid item xs>\r\n          <Typography>{this.getTotalCount(true)} / 100</Typography>\r\n        </Grid>\r\n        <Grid item xs></Grid>\r\n      </Grid>\r\n    );\r\n  };\r\n\r\n  renderMatrixHeader = () => {\r\n    return (\r\n      <Grid container spacing={0} style={{ marginBottom: \"15px\" }}>\r\n        <Grid item xs>\r\n          <Typography\r\n            style={{\r\n              textAlign: \"left\",\r\n              fontWeight: \"bold\",\r\n            }}\r\n          >\r\n            Gewebeart\r\n          </Typography>\r\n        </Grid>\r\n        <Grid item xs>\r\n          <Typography\r\n            style={{\r\n              textAlign: \"left\",\r\n              fontWeight: \"bold\",\r\n            }}\r\n          >\r\n            Count\r\n          </Typography>\r\n        </Grid>\r\n        <Grid item xs>\r\n          <Typography\r\n            style={{\r\n              textAlign: \"left\",\r\n              fontWeight: \"bold\",\r\n            }}\r\n          >\r\n            Increase Count\r\n          </Typography>\r\n        </Grid>\r\n      </Grid>\r\n    );\r\n  };\r\n\r\n  isSelSampleSet = () => {\r\n    // disable dropdown if sample is set and classification started\r\n    const dropdownDisabled = this.props.tiles.getHistoClassificationStarted();\r\n    return dropdownDisabled;\r\n  };\r\n\r\n  render() {\r\n    const { structures, selectedLayer } = this.props;\r\n    return (\r\n      <div>\r\n        <FormControl>\r\n          <InputLabel>Sample</InputLabel>\r\n          <Select\r\n            name=\"SelectSample\"\r\n            label=\"Sample\"\r\n            variant=\"standard\"\r\n            style={{ marginBottom: \"30px\" }}\r\n            value={this.props.resultTab.getSelectedStructure()}\r\n            onChange={this.handleChangeSelectedStructure}\r\n            disabled={this.isSelSampleSet()}\r\n          >\r\n            {this.props.structures\r\n              .filter((element) => element.subtypeLevel === 0)\r\n              .map((structure, idx) => (\r\n                <MenuItem key={idx} value={idx}>\r\n                  {structure.label}\r\n                </MenuItem>\r\n              ))}\r\n          </Select>\r\n        </FormControl>\r\n        {this.renderMatrixHeader()}\r\n        {this.findChilds(structures[selectedLayer]).map((structure, idx) =>\r\n          this.renderSubtypeRow(structure, idx)\r\n        )}\r\n        {this.renderMatrixBottom()}\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\n// define the component's interface\r\nScoringMatrixHistoPointCounting.propTypes = {\r\n  persistentStorage: PropTypes.object,\r\n  resultTab: PropTypes.object,\r\n  tiles: PropTypes.object,\r\n  selectedLayer: PropTypes.number,\r\n  showGallery: PropTypes.bool,\r\n  structures: PropTypes.array,\r\n  roiLayers: PropTypes.array,\r\n  onSelectLayer: PropTypes.func,\r\n  resetStructures: PropTypes.func,\r\n  onChangeTool: PropTypes.func,\r\n  onNext: PropTypes.func,\r\n  project: PropTypes.object,\r\n};\r\n\r\nexport default withAllViewerContexts(\r\n  withTiles(withResultTab(withStyles(styles)(ScoringMatrixHistoPointCounting)))\r\n);\r\n","import React, { Component } from \"react\";\r\nimport { withRouter } from \"react-router-dom\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport ScoringMatrixHistoClassification from \"../ScoringMatrixHistoClassification\";\r\nimport ScoringMatrixHistoPointCounting from \"../ScoringMatrixHistoPointCounting\";\r\nimport MiniMap from \"../MiniMap\";\r\n\r\nimport { Add, ArrowDropDown, ArrowDropUp } from \"@mui/icons-material\";\r\n\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n\r\nimport {\r\n  Grid,\r\n  Typography,\r\n  Button,\r\n  Tooltip,\r\n  IconButton,\r\n  ListItem,\r\n  TextField,\r\n  FormControlLabel,\r\n  Checkbox,\r\n} from \"@mui/material\";\r\n\r\nimport { withAllViewerContexts } from \"../../contexts/AllViewerContexts\";\r\nimport { withTiles } from \"../../contexts/TilesContext\";\r\nimport { withResultTab } from \"../../contexts/ResultTabContext\";\r\n\r\nimport Backend from \"../../../common/utils/Backend\";\r\n\r\n// define the component's styling\r\nconst styles = () => ({\r\n  flexRowRemainingHeight: {\r\n    flex: \"1 1 auto\",\r\n    overflowY: \"auto\",\r\n  },\r\n  spacing: {\r\n    padding: 10,\r\n    paddingBottom: 0,\r\n    paddingTop: 0,\r\n  },\r\n});\r\n\r\n// all possible substructures for module \"Histo-Klassifikation\"\r\nconst HistoClassififcationLabels = [\r\n  \"Skelettmuskulatur [Skm]\",\r\n  \"Brätstrukturen [Brät]\",\r\n  \"Bindegewebe kollagenes  [kBdg]\",\r\n  \"Bindegewebe elastisches [eBdg]\",\r\n  \"Fettgewebe [Fett]\",\r\n  \"Pflanzliches Fett  [pFett]\",\r\n  \"Gewürze [Gewü]\",\r\n  \"Gefäße [Gefä]\",\r\n  \"Drüsengewebe [Drüs]\",\r\n  \"Haut äußere Schwarten [Schwa]\",\r\n  \"Lebergewebe [Leber]\",\r\n  \"Lymphatisches Gewebe [Lymph]\",\r\n  \"Muskeleiweiß strukturlos (teils granuliert) [Mus]\",\r\n  \"Brät mit Hülle wiederverarbeitetes [ReMit]\",\r\n  \"Brät ohne Hülle wiederverarbeitetes [ReOhne]\",\r\n  \"Gelatineartige fremde Eiweißstrukturen [Gelat]\",\r\n  \"Stärkepartikel [Stärke]\",\r\n  \"Haut Geflügel [GHaut]\",\r\n  \"Speicheldrüse [Speidrü]\",\r\n  \"Knorpelpartikel [Knorpel]\",\r\n  \"Knochenpartikel [Knochen]\",\r\n  \"Pflanzliches Protein [pProt]\",\r\n  \"Pflanzliche Partikel [pPart]\",\r\n  \"Muskelabrieb, strukturlose Masse (teils granuliert, auch Vakuolen) [Mgranu]\",\r\n  \"Muskelabrieb, feinbrätartig (>drei Vakuolen auf einer Stelle) [Mbrät]\",\r\n  \"Muskelabrieb in Form amorpher Proteinstrukturen [Mamorph]\",\r\n  \"Deutlich von umgebender Muskulatur abgegrenzte straßenartige Bahnen aus Muskeleiweiß wabig-schaumig vernetzt großporig [MeatIn1]\",\r\n  \"Deutlich von umgebender Muskulatur abgegrenzte straßenartige Bahnen aus Muskeleiweiß wabig-schaumig vernetzt kleinporig [MeatIn2]\",\r\n  \"Deutlich von umgebender Muskulatur abgegrenzte straßenartige Bahnen aus Muskeleiweiß in Form von Detritus [MeatIn3]\",\r\n  \"Strukturen wie durch Transglutaminase entstanden inter-/intramuskulär [Transgl]\",\r\n  \"Tierisches Fremdprotein Plasmaeiweiß [tProt]\",\r\n  \"Schilddrüse [SchiDrü]\",\r\n  \"Skelettmuskulatur, zusammengefügt [SkmZus]\",\r\n  \"unbekannte Strukturen [US]\",\r\n];\r\n\r\nclass SideBarTabResults extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n    this.state = {\r\n      isMounted: false,\r\n      dynamicStructureText: \"\",\r\n      dynamicStructureAbbrText: \"\",\r\n      // shows if grid from last use uf project exists\r\n      gridExists: this.getGridExists(),\r\n      structuresToAdd: [],\r\n      showLabelsToAdd: false,\r\n    };\r\n\r\n    const { project } = this.props;\r\n\r\n    this.store = this.props.persistentStorage;\r\n    this.gridtool = \"gridtool\";\r\n    this.selectiontile = \"selectiontile\";\r\n    this.pointcountingtile = \"pointcountingtile\";\r\n    this.isHistoClass = project.type.includes(\"HistoClassification\");\r\n    this.isHistoPntC = project.type.includes(\"HistoPointCounting\");\r\n    this.tile = this.isHistoClass ? this.selectiontile : this.pointcountingtile;\r\n\r\n    this.sortSlides();\r\n  }\r\n\r\n  componentDidMount = () => {\r\n    this.setState({ isMounted: true });\r\n    this.props.resultTab.setZoomLevelFixed(false); // Re-enable zoom on customer request\r\n    if (!this.props.tiles.getHistoClassificationStarted()) {\r\n      this.props.onChangeTool(this.gridtool);\r\n    }\r\n  };\r\n\r\n  UNSAFE_componentWillMount = () => {\r\n    this.setSelectedSampleFromFilename();\r\n  };\r\n\r\n  componentWillUnmount = () => {\r\n    this.props.onChangeTool(\"none\");\r\n  };\r\n\r\n  setSelectedSampleFromFilename = () => {\r\n    const { project, resultTab, structures } = this.props;\r\n    // set selected sample according to file name (hint in filename about sample)\r\n    if (project && project.name && !resultTab.getSelSampleSet()) {\r\n      const res = project.name.split(\"-\");\r\n      const sampleAbbr = res[res.length - 2];\r\n      let sampleLabel = \"\";\r\n      switch (sampleAbbr) {\r\n        case \"KP\": // Kochpökelware\r\n          sampleLabel = \"Kochpökelware\";\r\n          break;\r\n        case \"BR\": // Brühwurst\r\n          sampleLabel = \"Brühwurst\";\r\n          break;\r\n        case \"HA\": // Hackfleisch\r\n          sampleLabel = \"Hackfleisch\";\r\n          break;\r\n        case \"KO\": // Kochwurst\r\n          sampleLabel = \"Kochwurst\";\r\n          break;\r\n        case \"RO\": // Rohwurst\r\n          sampleLabel = \"Rohwurst\";\r\n          break;\r\n        case \"VP\": // VegFleischersatz\r\n          sampleLabel = \"VegFleischersatz\";\r\n          break;\r\n        default:\r\n          break;\r\n      }\r\n\r\n      // get index of sample to select\r\n      const idxNewSelectedStructure = structures.findIndex(\r\n        (element) => element.label === sampleLabel\r\n      );\r\n\r\n      if (idxNewSelectedStructure >= 0) {\r\n        this.props.onSelectLayer(idxNewSelectedStructure);\r\n        const selId = structures[idxNewSelectedStructure].id;\r\n\r\n        // get all parent structures\r\n        const parentStructures = structures.filter(\r\n          (element) => element.subtypeLevel === 0\r\n        );\r\n\r\n        // get Index of sample in parent structures\r\n        const parentIdxSelStructure = parentStructures.findIndex(\r\n          (element) => element.id === selId\r\n        );\r\n        resultTab.setSelectedStructure(parentIdxSelStructure);\r\n        this.store.save(\"selLayerSample\", idxNewSelectedStructure);\r\n      }\r\n      resultTab.setSelSampleSet(true);\r\n    }\r\n  };\r\n\r\n  getGridExists = () => {\r\n    const { roiLayers, resultTab } = this.props;\r\n    // check if grid was created in one roilayer\r\n    let exists = false;\r\n    roiLayers.forEach((l) => {\r\n      if (l.layer.regionRois.length > 0) {\r\n        exists = true;\r\n      }\r\n    });\r\n    resultTab.setGridExists(exists);\r\n    return exists;\r\n  };\r\n\r\n  findChilds = (subType) => {\r\n    const { structures } = this.props;\r\n    // return direct classification subtypes\r\n    return structures.filter(\r\n      (element) =>\r\n        element.subtypeLevel === subType.subtypeLevel + 1 &&\r\n        element.parentId === subType.id &&\r\n        element.classificationSubtype\r\n    );\r\n  };\r\n\r\n  resetStructures = (changeSample) => {\r\n    const {\r\n      structures,\r\n      roiLayers,\r\n      selectedLayer,\r\n      tools,\r\n      onChangeTool,\r\n      resultTab,\r\n    } = this.props;\r\n    const numberTiles = roiLayers[selectedLayer].layer.regionRois.length;\r\n    const gridSize = Math.sqrt(numberTiles);\r\n\r\n    // reset properties for each structure\r\n    structures.forEach((structure) => {\r\n      structure.avgClassFrequency = 0;\r\n      for (const key of Object.keys(structure.classFrequencies)) {\r\n        structure.classFrequencies[key] = 0;\r\n      }\r\n    });\r\n    resultTab.setSelectedRoi(0);\r\n    resultTab.setSelectedChildIndex(1);\r\n    resultTab.setResetPressed(true);\r\n    resultTab.setHundredTiles(false);\r\n\r\n    if (this.isHistoClass) {\r\n      // set started to false\r\n      this.props.tiles.setHistoClassificationStarted(false);\r\n    }\r\n\r\n    // save selectedRoi in local storage\r\n    this.store.save(\"selectedRoi\", resultTab.getSelectedRoi());\r\n\r\n    if (changeSample) {\r\n      // delete roiLayers\r\n      roiLayers.forEach((roiLayer) => {\r\n        roiLayer.layer.regionRois = [];\r\n      });\r\n      //if condistion so that onChangeTool(\"none\") doesnt affect Histo Modules, but otherwise no new bugs occur\r\n      if (!(this.isHistoClass || this.isHistoPntC)) {\r\n        onChangeTool(\"none\");\r\n      }\r\n    } else {\r\n      // make new grid\r\n      // if no grid finish here\r\n      if (numberTiles === 0) {\r\n        return;\r\n      }\r\n\r\n      const roiItem = this.setRoiItem(roiLayers, selectedLayer, 0);\r\n\r\n      // make new grid\r\n      if (this.isHistoClass) {\r\n        tools[this.gridtool].createGrid(gridSize);\r\n      } else if (this.isHistoPntC) {\r\n        tools[this.gridtool].createGrid(gridSize, true);\r\n      }\r\n      onChangeTool(this.tile);\r\n      tools[this.tile].setNextTile(roiItem);\r\n    }\r\n  };\r\n\r\n  resetRoiLayers = () => {\r\n    const { allRoiLayers } = this.props;\r\n    // make all roiLayers in all files empty\r\n    for (const value of Object.entries(allRoiLayers)) {\r\n      value[1].forEach((element) => {\r\n        element.layer.regionRois = [];\r\n      });\r\n    }\r\n  };\r\n\r\n  sortSlides = () => {\r\n    this.props.project.files.sort((a, b) => {\r\n      if (a.fileName < b.fileName) return -1;\r\n      if (a.fileName > b.fileName) return 1;\r\n      return 0;\r\n    });\r\n  };\r\n\r\n  onStart = () => {\r\n    const {\r\n      tools,\r\n      onChangeTool,\r\n      roiLayers,\r\n      selectedLayer,\r\n      project,\r\n      fileId,\r\n      onSelectFile,\r\n      resultTab,\r\n      tiles,\r\n    } = this.props;\r\n    const savedRoi = this.store.load(\"selectedRoi\");\r\n    const numberRegionRois = roiLayers[selectedLayer].layer.regionRois.length;\r\n    const gridSize = Math.sqrt(numberRegionRois);\r\n\r\n    // if no grid\r\n    if (numberRegionRois === 0 && this.isHistoClass) {\r\n      window.showWarningSnackbar(\"Please create a grid before annotating\");\r\n      this.props.onChangeTool(this.gridtool);\r\n      return;\r\n    }\r\n\r\n    // reset\r\n    if (tiles.getHistoClassificationStarted()) {\r\n      // initialize gridtool if not initialized yet\r\n      onChangeTool(this.gridtool);\r\n      setTimeout(() => this.resetStructures(), 100);\r\n      // set started to false\r\n      tiles.setHistoClassificationStarted(false);\r\n\r\n      if (fileId !== project.files[0].id && this.isHistoClass) {\r\n        this.resetRoiLayers();\r\n        window.showWarningSnackbar(\"Changing to file 1 ...\");\r\n        onSelectFile(project.files[0].id);\r\n      }\r\n      return;\r\n    }\r\n\r\n    // set corresponding zoom level for grid size\r\n    if (this.isHistoClass) {\r\n      window.setZoomLevelForGridSize(gridSize);\r\n\r\n      // get selectedRoi from previous use\r\n      if (savedRoi !== undefined) {\r\n        resultTab.setSelectedRoi(savedRoi);\r\n      } else {\r\n        resultTab.setSelectedRoi(0);\r\n      }\r\n\r\n      // make tilesClassificationTool active\r\n      const roiItem = this.setRoiItem(roiLayers, selectedLayer, 0);\r\n      tools[this.selectiontile].setNextTile(roiItem);\r\n      onChangeTool(this.selectiontile);\r\n      // On Start set Labels to 0\r\n      this.checkIfSkipped();\r\n      this.setClassToZero();\r\n    } else if (this.isHistoPntC) {\r\n      onChangeTool(this.gridtool);\r\n      // make small delay to initialize grid tool\r\n      setTimeout(() => this.startHistoPointCounting(), 100);\r\n    }\r\n\r\n    tiles.setHistoClassificationStarted(true);\r\n    resultTab.setResetPressed(false);\r\n    window.setGridSize(gridSize);\r\n  };\r\n\r\n  startHistoPointCounting = () => {\r\n    const { tools, onChangeTool, roiLayers, selectedLayer, resultTab } =\r\n      this.props;\r\n    const numberRegionRois = roiLayers[selectedLayer].layer.regionRois.length;\r\n    const savedRoi = this.store.load(\"selectedRoi\");\r\n\r\n    // only create grid if not exists\r\n    if (numberRegionRois === 0) {\r\n      tools[this.gridtool].createGrid(20, true);\r\n    }\r\n\r\n    window.setZoomLevelForGridSize(20);\r\n\r\n    // get selectedRoi from previous use\r\n    if (savedRoi !== undefined) {\r\n      resultTab.setSelectedRoi(savedRoi);\r\n    } else {\r\n      resultTab.setSelectedRoi(0);\r\n    }\r\n\r\n    // make tilesClassificationTool active\r\n    onChangeTool(this.pointcountingtile);\r\n    const roiItem = this.setRoiItem(roiLayers, selectedLayer, 0);\r\n    tools[this.pointcountingtile].setNextTile(roiItem);\r\n\r\n    // check if 100 tiles already classified\r\n    const totalCount = this.getTotalCount();\r\n    resultTab.setHundredTiles(totalCount >= 100);\r\n  };\r\n\r\n  onPause = () => {\r\n    const belongsToFinishedTab = this.store.load(\"belongsToFinishedTab\");\r\n\r\n    if (belongsToFinishedTab === undefined) {\r\n      this.props.onSave();\r\n    } else {\r\n      this.saveToJSON();\r\n    }\r\n  };\r\n\r\n  setRoiItem = (roiLayers, selectedLayer, selectedRoi) => {\r\n    return {\r\n      maxX: roiLayers[selectedLayer].layer.regionRois[selectedRoi].bounds.left,\r\n      maxY: roiLayers[selectedLayer].layer.regionRois[selectedRoi].bounds.top,\r\n      minX: roiLayers[selectedLayer].layer.regionRois[selectedRoi].bounds.right,\r\n      minY: roiLayers[selectedLayer].layer.regionRois[selectedRoi].bounds\r\n        .bottom,\r\n      roi: roiLayers[selectedLayer].layer.regionRois[selectedRoi],\r\n    };\r\n  };\r\n\r\n  blockPrevious = () => {\r\n    const { roiLayers, selectedLayer, onChangeTool } = this.props;\r\n    const numberRegionRois = roiLayers[selectedLayer].layer.regionRois.length;\r\n\r\n    // if no grid\r\n    if (numberRegionRois === 0) {\r\n      window.showWarningSnackbar(\"Please create a grid before annotating\");\r\n      onChangeTool(this.gridtool);\r\n      return true;\r\n    }\r\n\r\n    return false;\r\n  };\r\n\r\n  onPrevious = () => {\r\n    if (this.blockPrevious()) return;\r\n\r\n    const { tools, roiLayers, selectedLayer, onChangeTool, resultTab } =\r\n      this.props;\r\n    const selectedRoi = resultTab.getSelectedRoi();\r\n    const roiItem = this.setRoiItem(roiLayers, selectedLayer, selectedRoi);\r\n\r\n    if (this.isHistoClass) {\r\n      this.previousHistoClassification();\r\n    } else if (this.isHistoPntC) {\r\n      this.previousHistoPointCounting();\r\n    }\r\n    tools[this.tile].setNextTile(roiItem);\r\n    onChangeTool(this.tile);\r\n\r\n    this.store.save(\"selectedRoi\", resultTab.getSelectedRoi());\r\n  };\r\n\r\n  previousHistoClassification = () => {\r\n    const { roiLayers, selectedLayer } = this.props;\r\n\r\n    this.checkIfSkipped();\r\n    // if first tile of scene go to previous file last tile\r\n    if (this.props.resultTab.getSelectedRoi() === 0) {\r\n      // change file\r\n      let prevFileId = this.getPrevFileId();\r\n      if (prevFileId) {\r\n        let numberTiles = roiLayers[selectedLayer].layer.regionRois.length;\r\n        this.props.resultTab.setSelectedRoi(numberTiles - 1);\r\n        this.props.resultTab.setSelectedChildIndex(1);\r\n        window.showWarningSnackbar(\"Please wait, loading previous file ...\");\r\n        this.props.onSelectFile(prevFileId);\r\n        this.props.resultTab.setZoomLevelFixed(false);\r\n        this.setClassToZero();\r\n      } else {\r\n        return;\r\n      }\r\n    } else {\r\n      let nextRoi = this.props.resultTab.getSelectedRoi() - 1;\r\n      this.props.resultTab.setSelectedRoi(nextRoi);\r\n      this.props.resultTab.setSelectedChildIndex(1);\r\n      this.setClassToZero();\r\n    }\r\n  };\r\n\r\n  previousHistoPointCounting = () => {\r\n    const { resultTab, onSelectFile } = this.props;\r\n    const selectedRoi = resultTab.getSelectedRoi();\r\n    const lastTileIndices = this.store.load(\"tileIndices\");\r\n    let nextRoi;\r\n\r\n    // if first tile of scene do nothing\r\n    if (selectedRoi === 0) {\r\n      const prevFileId = this.getPrevFileId();\r\n      if (prevFileId) {\r\n        const roiFile = lastTileIndices ? lastTileIndices[prevFileId] : 0;\r\n        // get tile index from previous file\r\n        resultTab.setSelectedRoi(roiFile);\r\n        resultTab.setSelectedChildIndex(1);\r\n        resultTab.setZoomLevelFixed(false);\r\n        resultTab.setHundredTiles(false);\r\n        window.showWarningSnackbar(\"Please wait, loading previous file ...\");\r\n        onSelectFile(prevFileId);\r\n      } else {\r\n        return;\r\n      }\r\n    } else {\r\n      // if first tile of blue tiles from specification\r\n      if (resultTab.getSelectedRoi() === 21) {\r\n        // set last red tile from specification\r\n        resultTab.setSelectedRoi(378);\r\n        return;\r\n      }\r\n\r\n      // check if last tile in row --> then skip next row\r\n      if (selectedRoi % 20 === 0 || selectedRoi % 20 === 1) {\r\n        nextRoi = selectedRoi - 22;\r\n      } else {\r\n        nextRoi = selectedRoi - 2;\r\n      }\r\n\r\n      resultTab.setSelectedRoi(nextRoi);\r\n    }\r\n  };\r\n\r\n  blockNext = () => {\r\n    const { roiLayers, selectedLayer, onChangeTool, resultTab } = this.props;\r\n    const numberTiles = roiLayers[selectedLayer].layer.regionRois.length;\r\n\r\n    // if file is changing no classification is possible for a few seconds\r\n    if (resultTab.getFileChange()) return true;\r\n\r\n    // if no grid is initialized yet no classification is possible\r\n    if (numberTiles === 0) {\r\n      window.showWarningSnackbar(\"Please create a grid before annotating\");\r\n      onChangeTool(this.gridtool);\r\n      return true;\r\n    }\r\n\r\n    // if last tile in last file stop\r\n    if (this.nextButtonDisabled() && !resultTab.getFileChange()) {\r\n      window.showWarningSnackbar(\"Finished!\");\r\n      return true;\r\n    }\r\n\r\n    return false;\r\n  };\r\n\r\n  onNext = () => {\r\n    if (this.blockNext()) return;\r\n\r\n    const { tools, roiLayers, selectedLayer, onChangeTool, resultTab } =\r\n      this.props;\r\n    const selectedRoi = resultTab.getSelectedRoi();\r\n    const roiItem = this.setRoiItem(roiLayers, selectedLayer, selectedRoi);\r\n\r\n    // set new selectedRoi\r\n    if (this.isHistoClass) {\r\n      this.nextHistoClassification();\r\n    } else if (this.isHistoPntC) {\r\n      this.nextHistoPointCounting();\r\n    }\r\n    tools[this.tile].setNextTile(roiItem);\r\n    onChangeTool(this.tile);\r\n\r\n    this.store.save(\"selectedRoi\", resultTab.getSelectedRoi());\r\n  };\r\n\r\n  nextHistoClassification = () => {\r\n    const { roiLayers, selectedLayer, onSelectFile } = this.props;\r\n    let selectedRoi = this.props.resultTab.getSelectedRoi();\r\n\r\n    this.checkIfSkipped();\r\n\r\n    let numberTiles = roiLayers[selectedLayer].layer.regionRois.length;\r\n    if (selectedRoi === numberTiles - 1) {\r\n      // change file\r\n      let nextFileId = this.getNextFileId();\r\n      if (nextFileId) {\r\n        window.showWarningSnackbar(\"Please wait, loading next file ...\");\r\n        onSelectFile(nextFileId);\r\n        this.props.resultTab.setZoomLevelFixed(false);\r\n        this.props.resultTab.setSelectedRoi(0);\r\n      } else {\r\n        return;\r\n      }\r\n    } else {\r\n      let nextRoi = this.props.resultTab.getSelectedRoi() + 1;\r\n      this.props.resultTab.setSelectedRoi(nextRoi);\r\n    }\r\n\r\n    this.setClassToZero();\r\n    this.props.resultTab.setSelectedChildIndex(1);\r\n  };\r\n\r\n  checkIfSkipped = () => {\r\n    const { structures, roiLayers, resultTab } = this.props;\r\n    const selectedRoi = resultTab.getSelectedRoi();\r\n    const id_range = this.getRoiLayersIdRange();\r\n\r\n    // check if some layer was classified, if so return\r\n    for (let id in id_range) {\r\n      if (\r\n        roiLayers[id_range[id]].layer.regionRois[selectedRoi].frequencyClass !==\r\n        0\r\n      ) {\r\n        return;\r\n      }\r\n    }\r\n\r\n    // set Class to -1 and reduce counter by one for all Rois\r\n    for (let id in id_range) {\r\n      roiLayers[id_range[id]].layer.regionRois[selectedRoi].frequencyClass = -1;\r\n      for (let e in structures) {\r\n        if (structures[e].id === roiLayers[id_range[id]].id) {\r\n          structures[e].classFrequencies.class_0 -= 1;\r\n          break;\r\n        }\r\n      }\r\n    }\r\n  };\r\n\r\n  setClassToZero = () => {\r\n    const { structures, roiLayers, resultTab } = this.props;\r\n    const selectedRoi = resultTab.getSelectedRoi();\r\n    const id_range = this.getRoiLayersIdRange();\r\n\r\n    // set Class to 0 and increase the according counter\r\n    for (let id in id_range) {\r\n      if (\r\n        roiLayers[id_range[id]].layer.regionRois[selectedRoi].frequencyClass ===\r\n        -1\r\n      ) {\r\n        roiLayers[id_range[id]].layer.regionRois[\r\n          selectedRoi\r\n        ].frequencyClass = 0;\r\n        for (let e in structures) {\r\n          if (structures[e].id === roiLayers[id_range[id]].id) {\r\n            structures[e].classFrequencies.class_0 += 1;\r\n            break;\r\n          }\r\n        }\r\n      }\r\n    }\r\n  };\r\n\r\n  getRoiLayersIdRange = () => {\r\n    const { structures, roiLayers, selectedLayer } = this.props;\r\n    // get ids of RoiLayers that should be set to zero\r\n    const tmp = structures.filter(\r\n      (element) =>\r\n        element.subtypeLevel === structures[selectedLayer].subtypeLevel + 1 &&\r\n        element.parentId === structures[selectedLayer].id\r\n    );\r\n    let roi_min = 99999;\r\n    let roi_max = -1;\r\n\r\n    roiLayers.filter((element, idx) => {\r\n      for (let e in tmp) {\r\n        if (tmp[e].id === element.id) {\r\n          if (roi_min > idx) {\r\n            roi_min = idx;\r\n          }\r\n          if (roi_max < idx) {\r\n            roi_max = idx;\r\n          }\r\n          return true;\r\n        }\r\n      }\r\n      return false;\r\n    });\r\n\r\n    // create a range of ids\r\n    let id_range = [...Array(roi_max - roi_min + 1).keys()]; //+roi_min\r\n    for (let e in id_range) {\r\n      id_range[e] += roi_min;\r\n    }\r\n\r\n    return id_range;\r\n  };\r\n\r\n  nextHistoPointCounting = () => {\r\n    const { roiLayers, selectedLayer, onSelectFile, fileId, resultTab } =\r\n      this.props;\r\n    const numberTiles = roiLayers[selectedLayer].layer.regionRois.length;\r\n    const selectedRoi = resultTab.getSelectedRoi();\r\n    const totalCount = this.getTotalCount();\r\n    let lastTileIndices = this.store.load(\"tileIndices\");\r\n    let indicesObject = {};\r\n    resultTab.setHundredTiles(totalCount >= 100);\r\n\r\n    if (\r\n      (resultTab.getHundredTiles() && this.isLastClassifiedTile()) ||\r\n      selectedRoi === numberTiles - 1\r\n    ) {\r\n      const nextFileId = this.getNextFileId();\r\n      if (nextFileId) {\r\n        if (lastTileIndices === undefined) {\r\n          indicesObject[fileId] = selectedRoi;\r\n          this.store.save(\"tileIndices\", indicesObject);\r\n        } else {\r\n          lastTileIndices[fileId] = selectedRoi;\r\n          this.store.save(\"tileIndices\", lastTileIndices);\r\n        }\r\n\r\n        window.showWarningSnackbar(\"Please wait, loading next file ...\");\r\n        onSelectFile(nextFileId);\r\n        resultTab.setFileChange(true);\r\n        resultTab.setZoomLevelFixed(false);\r\n        resultTab.setSelectedRoi(0);\r\n        resultTab.setHundredTiles(false);\r\n        return;\r\n      }\r\n    }\r\n\r\n    // check if last tile in row --> then skip next row\r\n    let nextRoi;\r\n    if (selectedRoi % 20 === 18 || selectedRoi % 20 === 19) {\r\n      nextRoi = selectedRoi + 22;\r\n    } else {\r\n      nextRoi = selectedRoi + 2;\r\n    }\r\n\r\n    // check if nextRoi exists\r\n    if (nextRoi >= numberTiles) {\r\n      // roi does not exist --> start with \"blue\" tiles from specifications\r\n      nextRoi = 21;\r\n    }\r\n\r\n    resultTab.setSelectedRoi(nextRoi);\r\n  };\r\n\r\n  isLastClassifiedTile = () => {\r\n    const { structures, roiLayers, selectedLayer, resultTab } = this.props;\r\n    const selectedRoi = resultTab.getSelectedRoi();\r\n\r\n    // get id of \"leer\" child\r\n    let emptyId = 0;\r\n    this.findChilds(structures[selectedLayer]).forEach((child) => {\r\n      if (child.label === \"leer [leer]\") {\r\n        emptyId = child.id;\r\n      }\r\n    });\r\n\r\n    // get all classified tiles\r\n    // if selectedRoi is even --> red tile (see specifications)\r\n    let classifiedTiles;\r\n    if (selectedRoi % 2 === 0) {\r\n      classifiedTiles = roiLayers[selectedLayer].layer.regionRois.filter(\r\n        (roi, idx) =>\r\n          roi.isAnnotated && roi.structureId !== emptyId && idx % 2 === 0\r\n      );\r\n    } else {\r\n      // if selectedRoi is uneven --> blue tile (see specifications)\r\n      classifiedTiles = roiLayers[selectedLayer].layer.regionRois.filter(\r\n        (roi, idx) =>\r\n          roi.isAnnotated && roi.structureId !== emptyId && idx % 2 === 1\r\n      );\r\n    }\r\n\r\n    // get index of last classified tile\r\n    const idxLastTile = roiLayers[selectedLayer].layer.regionRois.findIndex(\r\n      (element) => element === classifiedTiles[classifiedTiles.length - 1]\r\n    );\r\n\r\n    // check if blue tiles classified\r\n    const blueTiles = roiLayers[selectedLayer].layer.regionRois.filter(\r\n      (roi, idx) =>\r\n        roi.isAnnotated && roi.structureId !== emptyId && idx % 2 === 1\r\n    );\r\n\r\n    const blueTilesClassified = blueTiles.length > 0 ? true : false;\r\n\r\n    // if selectedRoi has same Index as last classified tile return true\r\n    if (idxLastTile === selectedRoi) {\r\n      if (selectedRoi === 378 && blueTilesClassified) {\r\n        // if last red tile but blue tiles are already classified\r\n        return false;\r\n      } else {\r\n        return true;\r\n      }\r\n    } else {\r\n      return false;\r\n    }\r\n  };\r\n\r\n  getNextFileId = () => {\r\n    const { project, fileId } = this.props;\r\n    const inxCurrentFile = project.files.findIndex(\r\n      (element) => element.id === fileId\r\n    );\r\n\r\n    if (project.files[inxCurrentFile + 1]) {\r\n      return project.files[inxCurrentFile + 1].id;\r\n    } else {\r\n      window.showWarningSnackbar(\"Last file.\");\r\n      return null;\r\n    }\r\n  };\r\n\r\n  getPrevFileId = () => {\r\n    const { project, fileId } = this.props;\r\n    const inxCurrentFile = project.files.findIndex(\r\n      (element) => element.id === fileId\r\n    );\r\n\r\n    if (project.files[inxCurrentFile - 1]) {\r\n      return project.files[inxCurrentFile - 1].id;\r\n    } else {\r\n      window.showWarningSnackbar(\"First file.\");\r\n      return null;\r\n    }\r\n  };\r\n\r\n  saveToJSON = () => {\r\n    if (this.isHistoClass) {\r\n      this.checkIfSkipped();\r\n    }\r\n\r\n    this.props.onSave();\r\n\r\n    if (this.getTotalCount() < 100 && this.isHistoPntC) {\r\n      window.showWarningSnackbar(\"Not 100 classified tiles in each file\");\r\n    }\r\n\r\n    // make excel table with results\r\n    Backend.setProjectsPending([this.props.project.id], () => {\r\n      console.log(\"project state changed to pending:\", this.props.project.id);\r\n    });\r\n  };\r\n\r\n  onEnd = () => {\r\n    this.store.save(\"belongsToFinishedTab\", true);\r\n    this.saveToJSON();\r\n\r\n    const { history } = this.props;\r\n\r\n    setTimeout(\r\n      function () {\r\n        history.push(\"/\");\r\n      },\r\n      3000,\r\n      history\r\n    );\r\n  };\r\n\r\n  getTotalCount = () => {\r\n    const { structures, roiLayers, selectedLayer } = this.props;\r\n\r\n    let emptyId = 0;\r\n    this.findChilds(structures[selectedLayer]).forEach((child) => {\r\n      if (child.label === \"leer [leer]\") {\r\n        emptyId = child.id;\r\n      }\r\n    });\r\n\r\n    // get number of rois that are not of class \"leer\"\r\n    let numberRois = roiLayers[selectedLayer].layer.regionRois.filter(\r\n      (roi) => roi.isAnnotated && roi.structureId !== emptyId\r\n    ).length;\r\n\r\n    return numberRois;\r\n  };\r\n\r\n  renderGridTool = () => {\r\n    const { tool } = this.props;\r\n    return (\r\n      <div>\r\n        {tool && !tool.noConfig && <Grid>{tool.renderConfiguration()}</Grid>}\r\n      </div>\r\n    );\r\n  };\r\n\r\n  addStructure = () => {\r\n    const { projectContext, structures, selectedLayer } = this.props;\r\n    const { dynamicStructureText, dynamicStructureAbbrText } = this.state;\r\n\r\n    if (dynamicStructureText === \"\") {\r\n      window.showWarningSnackbar(\"Please add label of new structure.\");\r\n      return;\r\n    } else if (dynamicStructureAbbrText === \"\") {\r\n      window.showWarningSnackbar(\"Please add abbreviation for new structure.\");\r\n      return;\r\n    }\r\n\r\n    // put label and abbreviation together for label of new structure\r\n    const newSubstructureLabel =\r\n      dynamicStructureText + \" [\" + dynamicStructureAbbrText + \"]\";\r\n\r\n    if (this.isHistoPntC) {\r\n      // add new subtype\r\n      projectContext.addSubType(\r\n        structures[selectedLayer],\r\n        newSubstructureLabel,\r\n        true\r\n      );\r\n    }\r\n\r\n    this.setState({ dynamicStructureText: \"\", dynamicStructureAbbrText: \"\" });\r\n  };\r\n\r\n  addSelectedStructures = () => {\r\n    const { projectContext, structures, selectedLayer } = this.props;\r\n    const { structuresToAdd } = this.state;\r\n\r\n    if (this.isHistoClass) {\r\n      // add new substructures\r\n      structuresToAdd.forEach((newSubstructureLabel) => {\r\n        projectContext.addSubStructure(\r\n          structures[selectedLayer],\r\n          newSubstructureLabel,\r\n          true\r\n        );\r\n      });\r\n    }\r\n\r\n    this.setState({ structuresToAdd: [], showLabelsToAdd: false });\r\n  };\r\n\r\n  getCurrentFileInx = () => {\r\n    const { project, fileId } = this.props;\r\n    return project.files.findIndex((element) => element.id === fileId) + 1;\r\n  };\r\n\r\n  startOrContinueText = () => {\r\n    if (!this.props.tiles.getHistoClassificationStarted()) {\r\n      return \"RUN\";\r\n    } else {\r\n      if (this.isHistoClass) {\r\n        return \"RESET ALL FILES\";\r\n      } else if (this.isHistoPntC) {\r\n        return \"RESET CURRENT FILE\";\r\n      } else {\r\n        return \"RESET\";\r\n      }\r\n    }\r\n  };\r\n\r\n  nextOrSkipText = () => {\r\n    if (this.isHistoClass) {\r\n      return \"NEXT\";\r\n    }\r\n\r\n    if (!this.getGridExists()) {\r\n      return \"NEXT\";\r\n    }\r\n    const { roiLayers, resultTab } = this.props;\r\n    const selectedRoi = resultTab.getSelectedRoi();\r\n\r\n    const id_range = this.getRoiLayersIdRange();\r\n\r\n    // set label to \"NEXT\" if Roi has classifications\r\n    for (let id in id_range) {\r\n      if (roiLayers[id_range[id]].layer.regionRois[selectedRoi] === undefined) {\r\n        return \"NEXT\";\r\n      }\r\n      if (\r\n        roiLayers[id_range[id]].layer.regionRois[selectedRoi].frequencyClass !==\r\n        0\r\n      ) {\r\n        return \"NEXT\";\r\n      }\r\n    }\r\n    return \"SKIP TILE\";\r\n  };\r\n\r\n  isLastFile = () => {\r\n    const { project, fileId } = this.props;\r\n    const inxCurrentFile = project.files.findIndex(\r\n      (element) => element.id === fileId\r\n    );\r\n\r\n    if (inxCurrentFile === project.files.length - 1) {\r\n      return true;\r\n    } else {\r\n      return false;\r\n    }\r\n  };\r\n\r\n  nextButtonDisabled = () => {\r\n    const { roiLayers, selectedLayer, resultTab, tiles } = this.props;\r\n\r\n    if (resultTab.getFileChange()) return true;\r\n\r\n    let disabled;\r\n    if (tiles.getHistoClassificationStarted()) {\r\n      disabled = false;\r\n    } else {\r\n      disabled = true;\r\n    }\r\n\r\n    const selectedRoi = resultTab.getSelectedRoi();\r\n    const numberTiles = roiLayers[selectedLayer].layer.regionRois.length;\r\n    if (!disabled && this.isHistoClass) {\r\n      // if last file and last tile\r\n      const lastTileClassification =\r\n        selectedRoi === numberTiles - 1 ? true : false;\r\n      if (this.isLastFile() && lastTileClassification) {\r\n        return true;\r\n      }\r\n    } else if (!disabled && this.isHistoPntC) {\r\n      // last file and last tile or last file and 100 annotated\r\n      const lastTileCounting = selectedRoi === numberTiles - 1 ? true : false;\r\n      if (\r\n        (this.isLastFile() && lastTileCounting) ||\r\n        (this.isLastFile() &&\r\n          resultTab.getHundredTiles() &&\r\n          this.isLastClassifiedTile())\r\n      ) {\r\n        return true;\r\n      }\r\n    }\r\n\r\n    return disabled;\r\n  };\r\n\r\n  getAbbreviationOfStructure = (label) => {\r\n    let labelWithBracket = label.split(\"[\")[1];\r\n    if (!labelWithBracket) {\r\n      labelWithBracket = label;\r\n    }\r\n    const abbreviation = labelWithBracket.substring(\r\n      0,\r\n      labelWithBracket.length - 1\r\n    );\r\n    return abbreviation;\r\n  };\r\n\r\n  getOtherLabels = () => {\r\n    const { structures, selectedLayer } = this.props;\r\n\r\n    // get all childs of selected sample\r\n    const sampleChilds = structures.filter(\r\n      (structure) => structure.parentId === structures[selectedLayer].id\r\n    );\r\n\r\n    // get all labels sampleChilds\r\n    let sampleChildsLabels = [];\r\n    sampleChilds.forEach((child) => {\r\n      sampleChildsLabels.push(child.label);\r\n    });\r\n\r\n    // get all labels of histoclassificationlabels that are not in samplechilds\r\n    let newLabels = [];\r\n    HistoClassififcationLabels.forEach((histoLabel) => {\r\n      if (!sampleChildsLabels.includes(histoLabel)) {\r\n        newLabels.push(histoLabel);\r\n      }\r\n    });\r\n\r\n    return newLabels;\r\n  };\r\n\r\n  handleChangeNewStructures = (e, label) => {\r\n    // check if add ort remove structure\r\n    let updatedStructures = this.state.structuresToAdd;\r\n    if (e.target.checked) {\r\n      // add structure\r\n      updatedStructures.push(label);\r\n    } else {\r\n      // remove structure\r\n      // find index of label and remove it\r\n      const idx = updatedStructures.findIndex((labelStr) => labelStr === label);\r\n      updatedStructures.splice(idx, 1);\r\n    }\r\n\r\n    this.setState({ structuresToAdd: updatedStructures });\r\n  };\r\n\r\n  render() {\r\n    const { classes, visible, ...propsWithoutClasses } = this.props;\r\n\r\n    if (!visible) return null;\r\n\r\n    let numberTilesFile =\r\n      this.props.roiLayers[this.props.selectedLayer].layer.regionRois.length;\r\n\r\n    let showAddSubstructure = !this.props.tiles.getHistoClassificationStarted();\r\n    return (\r\n      <Grid\r\n        style={{ overflowX: \"hidden\", overflowY: \"auto\" }}\r\n        container\r\n        className={classes.flexRowRemainingHeight}\r\n      >\r\n        <Grid className={classes.spacing} item xs={12}>\r\n          <Typography\r\n            variant=\"h6\"\r\n            style={{ fontSize: \"18px\", marginBottom: \"20px\" }}\r\n          >\r\n            File {this.getCurrentFileInx()} / {this.props.project.files.length}\r\n          </Typography>\r\n          {this.isHistoClass && (\r\n            <ScoringMatrixHistoClassification\r\n              selectedRoi={this.props.resultTab.getSelectedRoi()}\r\n              resetStructures={this.resetStructures}\r\n              zoomLevelFixed={this.props.resultTab.getZoomLevelFixed()}\r\n              project={this.props.project}\r\n              {...propsWithoutClasses}\r\n            ></ScoringMatrixHistoClassification>\r\n          )}\r\n          {this.isHistoPntC && (\r\n            <ScoringMatrixHistoPointCounting\r\n              selectedRoi={this.props.resultTab.getSelectedRoi()}\r\n              onNext={this.onNext}\r\n              resetStructures={this.resetStructures}\r\n              zoomLevelFixed={this.props.resultTab.getZoomLevelFixed()}\r\n              project={this.props.project}\r\n              {...propsWithoutClasses}\r\n            ></ScoringMatrixHistoPointCounting>\r\n          )}\r\n          {this.isHistoPntC && showAddSubstructure && (\r\n            <ListItem\r\n              style={{\r\n                paddingBottom: 0,\r\n                paddingTop: 15,\r\n                paddingLeft: 0,\r\n              }}\r\n              key={1111}\r\n            >\r\n              <TextField\r\n                style={{\r\n                  paddingBottom: 0,\r\n                  paddingTop: 0,\r\n                  paddingLeft: 0,\r\n                  paddingRight: 5,\r\n                  width: 180,\r\n                }}\r\n                name=\"Textfield\"\r\n                placeholder=\"Label\"\r\n                label=\"Label\"\r\n                value={this.state.dynamicStructureText}\r\n                onChange={(e) =>\r\n                  this.setState({\r\n                    dynamicStructureText: e.target.value,\r\n                  })\r\n                }\r\n              />\r\n              <TextField\r\n                style={{\r\n                  paddingBottom: 0,\r\n                  paddingTop: 0,\r\n                  paddingLeft: 0,\r\n                  width: 120,\r\n                }}\r\n                name=\"Textfield\"\r\n                placeholder=\"Abbreviation\"\r\n                label=\"Abbreviation\"\r\n                value={this.state.dynamicStructureAbbrText}\r\n                onChange={(e) =>\r\n                  this.setState({\r\n                    dynamicStructureAbbrText: e.target.value,\r\n                  })\r\n                }\r\n              />\r\n              <Tooltip\r\n                disableInteractive\r\n                title=\"Add new structure (label [abbreviation])\"\r\n              >\r\n                <IconButton onClick={this.addStructure} size=\"large\">\r\n                  <Add />\r\n                </IconButton>\r\n              </Tooltip>\r\n            </ListItem>\r\n          )}\r\n\r\n          {this.isHistoClass && showAddSubstructure && (\r\n            <div style={{ marginTop: \"30px\" }}>\r\n              <Typography style={{ float: \"left\" }}>Add structures:</Typography>\r\n              <Tooltip\r\n                disableInteractive\r\n                title=\"Add new structures\"\r\n                style={{ display: \"inline-block\", marginTop: \"-12px\" }}\r\n              >\r\n                <IconButton\r\n                  onClick={() => {\r\n                    this.setState({\r\n                      showLabelsToAdd: !this.state.showLabelsToAdd,\r\n                    });\r\n                  }}\r\n                  size=\"large\"\r\n                >\r\n                  {this.state.showLabelsToAdd ? (\r\n                    <ArrowDropUp />\r\n                  ) : (\r\n                    <ArrowDropDown />\r\n                  )}\r\n                </IconButton>\r\n              </Tooltip>\r\n            </div>\r\n          )}\r\n\r\n          {this.isHistoClass &&\r\n            showAddSubstructure &&\r\n            this.state.showLabelsToAdd && (\r\n              <div>\r\n                {this.getOtherLabels().map((histoLabel, idx) => {\r\n                  return (\r\n                    <Tooltip disableInteractive key={idx} title={histoLabel}>\r\n                      <FormControlLabel\r\n                        style={{ width: \"160px\" }}\r\n                        control={\r\n                          <Checkbox\r\n                            name=\"CheckboxStructure\"\r\n                            onChange={(e) => {\r\n                              this.handleChangeNewStructures(e, histoLabel);\r\n                            }}\r\n                          />\r\n                        }\r\n                        label={this.getAbbreviationOfStructure(histoLabel)}\r\n                      />\r\n                    </Tooltip>\r\n                  );\r\n                })}\r\n              </div>\r\n            )}\r\n\r\n          {this.isHistoClass &&\r\n            showAddSubstructure &&\r\n            this.state.showLabelsToAdd && (\r\n              <Tooltip disableInteractive title=\"Add selected structures\">\r\n                <Button\r\n                  style={{ marginTop: \"5px\" }}\r\n                  size=\"small\"\r\n                  variant=\"contained\"\r\n                  color=\"primary\"\r\n                  onClick={() => this.addSelectedStructures()}\r\n                >\r\n                  Add selected structures\r\n                </Button>\r\n              </Tooltip>\r\n            )}\r\n\r\n          <Grid container spacing={3} style={{ marginTop: \"20px\" }}>\r\n            <Grid item xs={4}>\r\n              {this.props.resultTab.getRendererInitialized() &&\r\n                this.props.histogramConfig && (\r\n                  <MiniMap\r\n                    inSideBar={true}\r\n                    ome={this.props.ome}\r\n                    histogramConfig={\r\n                      this.props.histogramConfig[this.props.fileId]\r\n                    }\r\n                    visibleImage={this.props.tiles.getVisibleImages()}\r\n                    coloredImages={this.props.tiles.getColoredImages()}\r\n                    position={this.props.resultTab.getPosition()}\r\n                    zoom={this.props.resultTab.getScale()}\r\n                    canvas={this.props.resultTab.getRendererCanvas()}\r\n                    getPageForChannel={(c) => c}\r\n                    fileId={this.props.fileId}\r\n                  />\r\n                )}\r\n            </Grid>\r\n            <Grid item xs={8}>\r\n              <div>\r\n                <Grid container spacing={1}>\r\n                  <Grid item xs>\r\n                    <Button\r\n                      style={{ marginTop: \"5px\" }}\r\n                      size=\"small\"\r\n                      disabled={this.nextButtonDisabled()}\r\n                      fullWidth\r\n                      variant=\"contained\"\r\n                      color=\"primary\"\r\n                      onClick={() => this.onNext()}\r\n                    >\r\n                      {this.nextOrSkipText()}\r\n                    </Button>\r\n                  </Grid>\r\n                  <Grid item xs>\r\n                    <Button\r\n                      style={{ marginTop: \"5px\" }}\r\n                      size=\"small\"\r\n                      disabled={\r\n                        this.props.tiles.getHistoClassificationStarted()\r\n                          ? false\r\n                          : true\r\n                      }\r\n                      fullWidth\r\n                      variant=\"contained\"\r\n                      color=\"primary\"\r\n                      onClick={() => this.onPrevious()}\r\n                    >\r\n                      Previous\r\n                    </Button>\r\n                  </Grid>\r\n                  <Grid item xs style={{ marginTop: \"11px\" }}>\r\n                    <Typography variant=\"body1\" style={{ textAlign: \"center\" }}>\r\n                      Tile {this.props.resultTab.getSelectedRoi() + 1} /{\" \"}\r\n                      {numberTilesFile}\r\n                    </Typography>\r\n                  </Grid>\r\n                </Grid>\r\n                <Grid container spacing={1}>\r\n                  <Grid item xs>\r\n                    <Button\r\n                      style={{ marginTop: \"5px\" }}\r\n                      size=\"small\"\r\n                      fullWidth\r\n                      variant=\"contained\"\r\n                      color=\"primary\"\r\n                      onClick={() => this.onStart()}\r\n                    >\r\n                      {this.startOrContinueText()}\r\n                    </Button>\r\n                  </Grid>\r\n                  <Grid item xs>\r\n                    <Button\r\n                      style={{ marginTop: \"5px\" }}\r\n                      size=\"small\"\r\n                      fullWidth\r\n                      variant=\"contained\"\r\n                      color=\"primary\"\r\n                      onClick={() => this.onPause()}\r\n                    >\r\n                      Pause\r\n                    </Button>\r\n                  </Grid>\r\n                  <Grid item xs>\r\n                    <Button\r\n                      style={{ marginTop: \"5px\" }}\r\n                      size=\"small\"\r\n                      fullWidth\r\n                      variant=\"contained\"\r\n                      color=\"primary\"\r\n                      onClick={() => this.onEnd()}\r\n                    >\r\n                      End\r\n                    </Button>\r\n                  </Grid>\r\n                </Grid>\r\n              </div>\r\n            </Grid>\r\n          </Grid>\r\n        </Grid>\r\n      </Grid>\r\n    );\r\n  }\r\n}\r\n\r\n// define the component's interface\r\nSideBarTabResults.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  // sidebar tab properties\r\n  sideBarWidth: PropTypes.number,\r\n  visible: PropTypes.bool,\r\n  // general properties\r\n  id: PropTypes.string.isRequired,\r\n  viewerConfig: PropTypes.object,\r\n  // historgram\r\n  ome: PropTypes.object,\r\n  histogramConfig: PropTypes.object,\r\n  onChangeChannels: PropTypes.func,\r\n  // file management\r\n  onSelectFile: PropTypes.func,\r\n  onExcludeFilesToggle: PropTypes.func,\r\n  //not ordered\r\n  project: PropTypes.object,\r\n  resultTab: PropTypes.object,\r\n  structures: PropTypes.array,\r\n  roiLayers: PropTypes.array,\r\n  onSelectLayer: PropTypes.func,\r\n  persistentStorage: PropTypes.object,\r\n  selectedLayer: PropTypes.number,\r\n  tools: PropTypes.array,\r\n  onChangeTool: PropTypes.func,\r\n  tiles: PropTypes.object,\r\n  allRoiLayers: PropTypes.object,\r\n  fileId: PropTypes.string,\r\n  onSave: PropTypes.func,\r\n  history: PropTypes.object,\r\n  tool: PropTypes.object,\r\n  projectContext: PropTypes.object,\r\n};\r\n\r\nexport default withRouter(\r\n  withAllViewerContexts(\r\n    withTiles(withResultTab(withStyles(styles)(SideBarTabResults)))\r\n  )\r\n);\r\n","// Copyright: HS Analysis GmbH, 2019\r\n// Author: Viktor Eberhardt\r\n\r\n// Framework imports\r\nimport React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\n// External packages\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n\r\nimport Grid from \"@mui/material/Grid\";\r\nimport Tabs from \"@mui/material/Tabs\";\r\nimport Tab from \"@mui/material/Tab\";\r\n\r\nimport { FontAwesomeIcon } from \"@fortawesome/react-fontawesome\";\r\nimport {\r\n  faPencilRuler,\r\n  faCog,\r\n  faBrain,\r\n  faChartBar,\r\n} from \"@fortawesome/free-solid-svg-icons\";\r\n\r\n// HSA imports\r\nimport Backend from \"../../common/utils/Backend\";\r\nimport { Role } from \"../../common/utils\";\r\nimport { authenticationService } from \"../../common/services\";\r\n\r\nimport { Tools } from \"./VerticalToolBar\";\r\nimport { withAllViewerContexts } from \"../contexts/AllViewerContexts\";\r\n\r\nimport SideBarTabAI from \"./sidebar/SideBarTabAI\";\r\nimport SideBarTabRois from \"./sidebar/SideBarTabRois\";\r\nimport SideBarTabView from \"./sidebar/SideBarTabView\";\r\nimport SideBarTabResults from \"./sidebar/SideBarTabResults\";\r\n\r\nimport {\r\n  DatasetType,\r\n  DatasetTypeNames,\r\n  DatasetApproach,\r\n} from \"../../common/components/AITrainingSettings\";\r\n\r\n// define the component's styling\r\nconst styles = () => ({\r\n  sidebar: {\r\n    margin: 0,\r\n    background: \"#fff\",\r\n  },\r\n  tabsContainer: {\r\n    width: \"100%\",\r\n    \"& .MuiTabs-fixed\": {\r\n      minHeight: 44,\r\n      height: 44,\r\n    },\r\n  },\r\n  tab: {\r\n    minWidth: 395 / 3,\r\n    minHeight: 44,\r\n    height: 44,\r\n    paddingBottom: 0,\r\n    paddingTop: 0,\r\n    \"& *\": {\r\n      display: \"inline-block\",\r\n      fontSize: \"16px\",\r\n      lineHeight: \"16px\",\r\n    },\r\n    \"& svg\": {\r\n      marginRight: \"5px\",\r\n      position: \"relative\",\r\n      top: \"4px\",\r\n    },\r\n  },\r\n  flexVerticalContainer: {\r\n    height: \"100%\",\r\n    display: \"grid\",\r\n    gridTemplateRows: \"60px 1fr\",\r\n  },\r\n  flexRowContentHeight: {\r\n    //flex: \"0 1 auto\",\r\n    padding: 10,\r\n  },\r\n  tabContentContainer: {\r\n    display: \"grid\",\r\n    gridTemplateRows: \"1fr auto\",\r\n    height: \"100%\",\r\n    overflow: \"hidden\",\r\n  },\r\n});\r\n\r\nclass SideBar extends Component {\r\n  _isMounted = false;\r\n\r\n  constructor(props) {\r\n    super(props);\r\n    this.state = {\r\n      activeTab: 0,\r\n      channelSelectMode: \"all\",\r\n      availableModels: [],\r\n      currentUser: null,\r\n      isAdmin: false,\r\n      modelsInitialized: false,\r\n    };\r\n\r\n    window.forceSidebarUpdate = this.forceSidebarUpdate;\r\n  }\r\n\r\n  setMountedState = (stateObject, callback) => {\r\n    if (this._isMounted) {\r\n      this.setState(stateObject, callback);\r\n    }\r\n  };\r\n\r\n  forceSidebarUpdate = () => {\r\n    this.forceUpdate();\r\n  };\r\n\r\n  componentDidMount = () => {\r\n    this._isMounted = true;\r\n    // set active tab from local storage\r\n    let activeTab = this.props.persistentStorage.load(\"activeTab\");\r\n    if (activeTab) {\r\n      if (activeTab !== this.state.activeTab) {\r\n        this.setMountedState({ activeTab: activeTab });\r\n      }\r\n      this.props.projectContext.setActiveTab(activeTab);\r\n    }\r\n    authenticationService.currentUser.subscribe((x) => {\r\n      this.setMountedState({\r\n        currentUser: x,\r\n        isAdmin: x && x.role === Role.Admin,\r\n      });\r\n    });\r\n\r\n    // only load ai data if ai tab is present\r\n    if (this.props.viewerConfig.project.toolsInProject[\"AICockpit\"]) {\r\n      this.initAIFormData(false);\r\n      this.initAICockpitData();\r\n    }\r\n  };\r\n\r\n  initAICockpitData = () => {\r\n    let aiStateObject = {\r\n      open: false,\r\n      activeStep: 0,\r\n      maxEpochs: 0,\r\n      stepsProgress: \"-\",\r\n      epochsProgress: \"-\",\r\n      showTrainingButton: true,\r\n      buildingModel: false,\r\n      showTrainingProgress: false,\r\n      trainingFinished: false,\r\n      newModelName: \"\",\r\n      overallProgress: 0.0,\r\n      trainingSuccessful: true,\r\n      startTrainingTime: null,\r\n      errorLabel: \"Failed\",\r\n      metricsDict: {},\r\n      formData: {\r\n        modelType: DatasetType.ImageSegmentation,\r\n        datasetOnly: false,\r\n        fullScene:\r\n          this.props.viewerConfig.project.projectStringProperties[\r\n            \"ViewerType\"\r\n          ] == \"Gallery\",\r\n        selStructures: [],\r\n        structureIndices: [],\r\n        augmentations: [\"h_flip\", \"v_flip\"],\r\n        metaData: {\r\n          modelName: \"\",\r\n          versionName: \"001\",\r\n          newModel: true,\r\n          uniqueName: false,\r\n          validChar: false,\r\n        },\r\n        advancedSettings: {\r\n          backbones: {\r\n            unet: [],\r\n            unet_pp: [],\r\n            deepLabV3_p: [],\r\n            classification_models: [],\r\n          },\r\n          lossFunction: \"Cross Entropy\",\r\n          comDLArchitecture: null,\r\n          level: this.props.ome.maxLevel,\r\n          physicalSize: this.props.ome.physicalSizeX\r\n            ? this.props.ome.physicalSizeX\r\n            : 1,\r\n          physicalSizeUnit: this.props.ome.physicalSizeXUnit\r\n            ? this.props.ome.physicalSizeXUnit\r\n            : \"px\",\r\n          in_channels: this.setInputChannels(),\r\n          flChannels: this.setFlChannels(),\r\n          modelsize: \"m\",\r\n          epochs: 100,\r\n          optimizer: \"Adam\",\r\n          lr: 0.0001,\r\n          batch_size: 2,\r\n          datasetApproach: DatasetApproach.ImageSlidingWindow,\r\n          includeBackgroundTiles: false,\r\n          tileSize: 512,\r\n          overlap: 64,\r\n          objectBasedBaseStructure: null,\r\n          calculateWeightMap: false,\r\n          useExistingDataset: false,\r\n          useClassWeights: false,\r\n        },\r\n      },\r\n    };\r\n\r\n    this.props.projectContext.setState({\r\n      aiStateObject: aiStateObject,\r\n    });\r\n  };\r\n\r\n  setInputChannels = () => {\r\n    const { ome } = this.props;\r\n    let isBrightfield =\r\n      ome &&\r\n      ome.channels.length === 1 &&\r\n      ome.channels[0].type === \"brightfield\";\r\n\r\n    return isBrightfield ? 3 : ome.channels.length;\r\n  };\r\n\r\n  setFlChannels = () => {\r\n    const { ome, histogramConfig, fileId } = this.props;\r\n    let isBrightfield =\r\n      ome &&\r\n      ome.channels.length === 1 &&\r\n      ome.channels[0].type === \"brightfield\";\r\n\r\n    if (histogramConfig[fileId] && !isBrightfield) {\r\n      return histogramConfig[fileId].channels.map((c) => c.name);\r\n    } else {\r\n      return [];\r\n    }\r\n  };\r\n\r\n  componentWillUnmount = () => {\r\n    this._isMounted = false;\r\n  };\r\n\r\n  setAvailableModels = (availableModels) => {\r\n    this.setMountedState({ availableModels: availableModels });\r\n  };\r\n\r\n  setModelsInitialized = (initialized) => {\r\n    this.setMountedState({ modelsInitialized: initialized });\r\n  };\r\n\r\n  loadPersistentDefaultModels = () => {\r\n    let defaultModels = this.props.persistentStorage.loadProjectTypeValue(\r\n      this.props.project.type,\r\n      \"defaultModels\"\r\n    );\r\n    return Array.isArray(defaultModels) ? defaultModels : [];\r\n  };\r\n\r\n  /**\r\n   * Request all model data from disk and optionally from online sources.\r\n   * @param {bool} connectOnline Should models be donwloaded from the HSA online server. Defaults to false.\r\n   */\r\n  initAIFormData = (connectOnline = false) => {\r\n    this.setMountedState({ modelsInitialized: false });\r\n    Backend.initPythonModules();\r\n\r\n    Backend.getModelMetadata(\"hsa_models\", connectOnline, (aiModels) => {\r\n      // TODO Viktor: please check online mode\r\n\r\n      const formDataAICockpit = {};\r\n\r\n      // Set selected models for each structure\r\n      // start with index 1 -> skip Base ROI\r\n      for (let i = 1; i < this.props.structures.length; i++) {\r\n        let s = this.props.structures[i];\r\n        let selected_model = null;\r\n        let selected_version = null;\r\n        if (this.props.formDataAICockpit != null) {\r\n          if (typeof this.props.formDataAICockpit[s.id] !== \"undefined\") {\r\n            selected_model = this.props.formDataAICockpit[s.id].selectedModel;\r\n\r\n            if (\r\n              selected_model !== null &&\r\n              this.props.formDataAICockpit[s.id].models[selected_model]\r\n            ) {\r\n              selected_version =\r\n                this.props.formDataAICockpit[s.id].models[selected_model]\r\n                  .selectedVersion;\r\n            }\r\n          }\r\n        }\r\n\r\n        formDataAICockpit[s.id] = {\r\n          structureIndex: i,\r\n          selectedModel: selected_model,\r\n          selectedVersion: selected_version,\r\n          modelType: null,\r\n          fullStructure: s,\r\n          models: {},\r\n        };\r\n\r\n        for (let model of aiModels.newModels) {\r\n          formDataAICockpit[s.id].models[model.settings.meta_data.name] = {\r\n            selectedVersion: \"001\",\r\n            modelType:\r\n              DatasetTypeNames[model.settings.dataset_parameters.dataset_type],\r\n          };\r\n        }\r\n      }\r\n\r\n      this.setMountedState({\r\n        availableModels: aiModels.newModels,\r\n        modelsInitialized: true,\r\n      });\r\n\r\n      this.props.projectContext.setState({\r\n        aiModelRepository: aiModels.newModels,\r\n      });\r\n\r\n      // when project not saved yet\r\n      // try to apply models in project config\r\n      Backend.loadProject({ id: this.props.project.id }, (project) => {\r\n        if (project.projectData === null) {\r\n          const stringProperties =\r\n            this.props.viewerConfig.project.projectStringProperties;\r\n\r\n          let defaultModels = this.loadPersistentDefaultModels();\r\n          if (defaultModels.length === 0 && stringProperties.DefaultModels) {\r\n            defaultModels = stringProperties.DefaultModels.split(\",\");\r\n          }\r\n        }\r\n\r\n        // check if selected models still exist, otherwise, deselect it!\r\n        for (const structure of Object.values(formDataAICockpit)) {\r\n          if (structure.selectedModel !== null) {\r\n            const modelInRepo = aiModels.newModels.find(\r\n              (item) => item.settings.meta_data.name === structure.selectedModel\r\n            );\r\n            if (typeof modelInRepo === \"undefined\") {\r\n              structure.selectedModel = null;\r\n              structure.selectedVersion = null;\r\n            }\r\n          }\r\n        }\r\n\r\n        this.props.setAIFormData(formDataAICockpit);\r\n      });\r\n    });\r\n  };\r\n\r\n  componentDidUpdate() {\r\n    const { activeTool } = this.props;\r\n    if (\r\n      activeTool === \"none\" ||\r\n      typeof activeTool === \"undefined\" ||\r\n      activeTool === Tools.NONE ||\r\n      activeTool === \"iam_ai_inference\" ||\r\n      (activeTool === \"gridtool\" &&\r\n        !(\r\n          this.props.project.type.includes(\"HistoPointCounting\") ||\r\n          this.props.project.type.includes(\"HistoClassification\")\r\n        ))\r\n    )\r\n      return;\r\n  }\r\n\r\n  handleTabChange = (event, value) => {\r\n    const { project } = this.props;\r\n\r\n    if (value === this.state.activeTab) return;\r\n    // select tool coresponding to roilayer roi tab\r\n    if (value === 1 && this.props.activeTool === \"none\") {\r\n      if (this.props.structures[this.props.selectedLayer].tools[0]) {\r\n        let toolName =\r\n          this.props.structures[this.props.selectedLayer].tools[0].name;\r\n        if (\r\n          (toolName =\r\n            \"iam_ai_inference\" &&\r\n            !this.props.aiUsedStructures.filter(\r\n              (e) => e.id === this.props.structures[this.props.selectedLayer].id\r\n            ).length > 0)\r\n        ) {\r\n          toolName = \"none\";\r\n        }\r\n\r\n        this.props.onChangeTool(toolName);\r\n      }\r\n    }\r\n\r\n    // make tools to none if view tab is selected for some cases\r\n    if (value === 0) {\r\n      if (\r\n        project.type.includes(\"HistoPointCounting\") ||\r\n        project.type.includes(\"HistoClassification\") ||\r\n        (this.props.activeTool && this.props.activeTool.includes(\"iam_\"))\r\n      ) {\r\n        this.props.onChangeTool(\"none\");\r\n      }\r\n    }\r\n\r\n    // if resultTab select coresponding tools\r\n    if (this.isResultTab(value)) {\r\n      if (project.type.includes(\"HistoPointCounting\")) {\r\n        this.props.onChangeTool(\"pointcountingtile\");\r\n      } else if (project.type.includes(\"HistoClassification\")) {\r\n        this.props.onChangeTool(\"selectiontile\");\r\n      }\r\n    }\r\n\r\n    // save active tab to local storage\r\n    if (this.state.activeTab !== value) {\r\n      this.props.persistentStorage.save(\"activeTab\", value);\r\n      this.setMountedState({ activeTab: value });\r\n    }\r\n    this.props.projectContext.setActiveTab(value);\r\n\r\n    // only update if sidebar width changed\r\n    if (\r\n      project.type.includes(\"HistoPointCounting\") ||\r\n      project.type.includes(\"HistoClassification\")\r\n    ) {\r\n      setTimeout(() => this.props.setSideBarWidth(), 50);\r\n    }\r\n  };\r\n\r\n  isResultTab = (tab) => {\r\n    // check if active tab is result tab\r\n    if (!this.checkToolInConfig(\"ResultTab\")) {\r\n      return false;\r\n    }\r\n\r\n    // check which tabs exist in module --> then decide which index result tab has\r\n    let nextTab = tab;\r\n    if (\r\n      this.checkToolInConfig(\"AICockpit\") &&\r\n      this.checkToolInConfig(\"RoiTab\")\r\n    ) {\r\n      // resultTab = 3\r\n      return nextTab === 3;\r\n    } else if (\r\n      this.checkToolInConfig(\"AICockpit\") ||\r\n      this.checkToolInConfig(\"RoiTab\")\r\n    ) {\r\n      // resultTab = 2\r\n      return nextTab === 2;\r\n    } else {\r\n      // resultTab = 1\r\n      return nextTab === 1;\r\n    }\r\n  };\r\n\r\n  changeChannelSelectMode = (mode) => {\r\n    this.setMountedState({\r\n      channelSelectMode: mode,\r\n    });\r\n  };\r\n\r\n  checkToolInConfig(toolName) {\r\n    if (this.props.viewerConfig) {\r\n      if (this.props.viewerConfig.project.toolsInProject[toolName]) {\r\n        return true;\r\n      } else {\r\n        return false;\r\n      }\r\n    }\r\n  }\r\n\r\n  getActiveTabResults = () => {\r\n    // get tab number/index for reslults tab\r\n    // if AICockpit in project module results tab is number 3\r\n    if (\r\n      this.checkToolInConfig(\"AICockpit\") &&\r\n      this.checkToolInConfig(\"RoiTab\")\r\n    ) {\r\n      return 3;\r\n    } else if (\r\n      this.checkToolInConfig(\"AICockpit\") ||\r\n      this.checkToolInConfig(\"RoiTab\")\r\n    ) {\r\n      return 2;\r\n    } else {\r\n      return 1;\r\n    }\r\n  };\r\n\r\n  renderCommentTool = () => {\r\n    const { tool } = this.props;\r\n    return (\r\n      <div>\r\n        {tool && !tool.noConfig && <Grid>{tool.renderConfiguration()}</Grid>}\r\n      </div>\r\n    );\r\n  };\r\n\r\n  render() {\r\n    const { classes, ...propsWithoutClasses } = this.props;\r\n    const { rois, roiLayers, activeTool, showGallery, rendererRef, tool } =\r\n      this.props;\r\n    const { activeTab, isAdmin } = this.state;\r\n    const { annotationsReduced, totalRoiCount } = this.props.projectContext;\r\n\r\n    if (!roiLayers) return null;\r\n\r\n    let roiCount = 0;\r\n    const gridTileCount =\r\n      rendererRef && rendererRef.gridTileCount ? rendererRef.gridTileCount : 0;\r\n    if (annotationsReduced) {\r\n      roiCount = totalRoiCount;\r\n    } else if (rendererRef) {\r\n      roiCount =\r\n        rois.length -\r\n        gridTileCount +\r\n        roiLayers.reduce((acc, cur) => acc + cur.layer.regionRois.length, 0);\r\n    }\r\n\r\n    return (\r\n      <Grid\r\n        item\r\n        style={{\r\n          width: this.props.sideBarWidth,\r\n          overflow: \"hidden\",\r\n        }}\r\n        className={`${classes.sidebar} ${classes.flexVerticalContainer}`}\r\n      >\r\n        <Tabs\r\n          className={`${classes.tabsContainer} ${classes.flexRowContentHeight}`}\r\n          value={activeTab}\r\n          onChange={this.handleTabChange}\r\n          variant=\"fullWidth\"\r\n          indicatorColor=\"primary\"\r\n          textColor=\"primary\"\r\n        >\r\n          <Tab\r\n            id=\"viewTabBtn\"\r\n            className={classes.tab}\r\n            icon={<FontAwesomeIcon icon={faCog} size=\"lg\" />}\r\n            label=\"View\"\r\n          ></Tab>\r\n          {this.checkToolInConfig(\"RoiTab\") && rendererRef && (\r\n            <Tab\r\n              id=\"roiTabBtn\"\r\n              className={classes.tab}\r\n              icon={<FontAwesomeIcon icon={faPencilRuler} size=\"lg\" />}\r\n              label={\"ROIS (\" + roiCount + \")\"}\r\n            />\r\n          )}\r\n          {this.checkToolInConfig(\"AICockpit\") && (\r\n            <Tab\r\n              id=\"aiTabBtn\"\r\n              className={classes.tab}\r\n              icon={<FontAwesomeIcon icon={faBrain} size=\"lg\" />}\r\n              label=\"AI\"\r\n            ></Tab>\r\n          )}\r\n          {this.checkToolInConfig(\"ResultTab\") && (\r\n            <Tab\r\n              id=\"resultTabBtn\"\r\n              className={classes.tab}\r\n              icon={<FontAwesomeIcon icon={faChartBar} size=\"lg\" />}\r\n              label=\"scoring\"\r\n            ></Tab>\r\n          )}\r\n        </Tabs>\r\n        {activeTool !== \"comment\" || activeTool !== \"landmark\" ? (\r\n          <div className={classes.tabContentContainer}>\r\n            <SideBarTabView\r\n              visible={activeTab === 0}\r\n              {...propsWithoutClasses}\r\n            />\r\n            {this.checkToolInConfig(\"RoiTab\") && (\r\n              <SideBarTabRois\r\n                visible={activeTab === 1}\r\n                isAdmin={isAdmin}\r\n                forceSidebarUpdate={this.forceSidebarUpdate}\r\n                {...propsWithoutClasses}\r\n              />\r\n            )}\r\n            {this.checkToolInConfig(\"AICockpit\") && (\r\n              <SideBarTabAI\r\n                visible={activeTab === 2}\r\n                modelsInitialized={this.state.modelsInitialized}\r\n                availableModels={this.state.availableModels}\r\n                setAvailableModels={this.setAvailableModels}\r\n                setModelsInitialized={this.setModelsInitialized}\r\n                initAIFormData={this.initAIFormData}\r\n                {...propsWithoutClasses}\r\n              />\r\n            )}\r\n            {this.checkToolInConfig(\"ResultTab\") && (\r\n              <SideBarTabResults\r\n                componentRef={(c) => (this.sideBarTabResults = c)}\r\n                visible={\r\n                  activeTab === this.getActiveTabResults() && !showGallery\r\n                }\r\n                {...propsWithoutClasses}\r\n              />\r\n            )}\r\n            {tool && !tool.noConfig && (\r\n              <Grid\r\n                className={classes.flexRowContentHeight}\r\n                item\r\n                key={activeTool}\r\n                xs={12}\r\n                style={{\r\n                  borderTop: \"#EBEBEB solid\",\r\n                  overflowY: \"auto\",\r\n                  padding: \"20px\",\r\n                }}\r\n              >\r\n                {tool.renderConfiguration()}\r\n              </Grid>\r\n            )}\r\n          </div>\r\n        ) : (\r\n          <div style={{ padding: 10 }}>{this.renderCommentTool()}</div>\r\n        )}\r\n      </Grid>\r\n    );\r\n  }\r\n}\r\n\r\n// define the component's interface\r\nSideBar.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  sideBarWidth: PropTypes.number,\r\n  viewerConfig: PropTypes.object,\r\n  alterStructure: PropTypes.func,\r\n  histogramConfig: PropTypes.object,\r\n  onChangeChannels: PropTypes.func,\r\n  id: PropTypes.string.isRequired,\r\n  ome: PropTypes.object,\r\n  rois: PropTypes.array,\r\n  onCenterROI: PropTypes.func,\r\n  onHoverROI: PropTypes.func,\r\n  onSelectFile: PropTypes.func,\r\n  onExcludeFileToggle: PropTypes.func,\r\n  // roiLayers\r\n  roiLayers: PropTypes.array,\r\n  selectedLayer: PropTypes.number,\r\n  onChangeLayers: PropTypes.func,\r\n  onChangeTool: PropTypes.func,\r\n  deleteforAllScenes: PropTypes.func,\r\n  // tools\r\n  activeTool: PropTypes.string,\r\n  tool: PropTypes.object,\r\n  // opacity slider\r\n  opacity: PropTypes.number,\r\n  onChangeOpacity: PropTypes.func,\r\n  // Parameterset Export Import\r\n  onExportParameters: PropTypes.func,\r\n  onImportParameters: PropTypes.func,\r\n  formDataAICockpit: PropTypes.object,\r\n  onUpdateDimensions: PropTypes.func,\r\n  onSave: PropTypes.func,\r\n  //not ordered\r\n  persistentStorage: PropTypes.object,\r\n  projectContext: PropTypes.object,\r\n  project: PropTypes.object,\r\n  rendererRef: PropTypes.object,\r\n  setSideBarWidth: PropTypes.func,\r\n  showGallery: PropTypes.bool,\r\n  structures: PropTypes.array,\r\n  setAIFormData: PropTypes.func,\r\n  setAiUsedStructures: PropTypes.func,\r\n  aiUsedStructures: PropTypes.array,\r\n  fileId: PropTypes.string,\r\n};\r\n\r\nexport default withAllViewerContexts(withStyles(styles)(SideBar));\r\n","import React, { Component } from \"react\";\r\n\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport * as THREE from \"three\";\r\n\r\nclass ViewHelper extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n\r\n    this.state = {\r\n      scene: new THREE.Scene(),\r\n      renderer: new THREE.WebGLRenderer({ antialias: true, alpha: true }),\r\n      camera: new THREE.PerspectiveCamera(75, 800 / 800, 0.1, 1000),\r\n      propsCam: this.props.camera,\r\n      cameraPosition: new THREE.Vector3(0, 0, 1),\r\n      focusPoint: new THREE.Vector3(0, 0, 0),\r\n    };\r\n  }\r\n\r\n  componentDidMount = () => {\r\n    let width = this.props.viewHelperSize;\r\n    let height = this.props.viewHelperSize;\r\n    //Config Renderer\r\n    this.state.renderer.setClearColor(0x000000, 0);\r\n    this.state.renderer.setSize(width, height);\r\n    this.mount.appendChild(this.state.renderer.domElement);\r\n    //Config Camera\r\n    let cameraPosition = new THREE.Vector3(0, 0, 1);\r\n    let focusPoint = new THREE.Vector3(0, 0, 0);\r\n    this.setState({\r\n      cameraPosition,\r\n      focusPoint,\r\n    });\r\n    this.state.camera.position.set(\r\n      cameraPosition.x,\r\n      cameraPosition.y,\r\n      cameraPosition.z\r\n    );\r\n    this.state.camera.lookAt(focusPoint);\r\n    // Custom Axes\r\n    let color1 = new THREE.Color(\"#ff3653\");\r\n    let color2 = new THREE.Color(\"#8adb00\");\r\n    let color3 = new THREE.Color(\"#2c8fff\");\r\n    let geometry = new THREE.BoxGeometry(0.4, 0.01, 0.01).translate(0.2, 0, 0);\r\n    let xAxis = new THREE.Mesh(geometry, this.getAxisMaterial(color1));\r\n    let yAxis = new THREE.Mesh(geometry, this.getAxisMaterial(color2));\r\n    let zAxis = new THREE.Mesh(geometry, this.getAxisMaterial(color3));\r\n    yAxis.rotation.z = Math.PI / 2;\r\n    zAxis.rotation.y = -Math.PI / 2;\r\n    this.state.scene.add(xAxis);\r\n    this.state.scene.add(zAxis);\r\n    this.state.scene.add(yAxis);\r\n    let posXAxisHelper = new THREE.Sprite(this.getSpriteMaterial(color1, \"X\"));\r\n    posXAxisHelper.userData.type = \"posX\";\r\n    let posYAxisHelper = new THREE.Sprite(this.getSpriteMaterial(color2, \"Z\"));\r\n    posYAxisHelper.userData.type = \"posY\";\r\n    let posZAxisHelper = new THREE.Sprite(this.getSpriteMaterial(color3, \"Y\"));\r\n    posZAxisHelper.userData.type = \"posZ\";\r\n    let negXAxisHelper = new THREE.Sprite(this.getSpriteMaterial(color1));\r\n    negXAxisHelper.userData.type = \"negX\";\r\n    let negYAxisHelper = new THREE.Sprite(this.getSpriteMaterial(color2));\r\n    negYAxisHelper.userData.type = \"negY\";\r\n    let negZAxisHelper = new THREE.Sprite(this.getSpriteMaterial(color3));\r\n    negZAxisHelper.userData.type = \"negZ\";\r\n    posXAxisHelper.position.x = 0.4;\r\n    posYAxisHelper.position.y = 0.4;\r\n    posZAxisHelper.position.z = 0.4;\r\n    negXAxisHelper.position.x = -0.4;\r\n    negYAxisHelper.position.y = -0.4;\r\n    negZAxisHelper.position.z = -0.4;\r\n    posXAxisHelper.scale.setScalar(0.3);\r\n    negXAxisHelper.scale.setScalar(0.2);\r\n    posYAxisHelper.scale.setScalar(0.3);\r\n    negYAxisHelper.scale.setScalar(0.2);\r\n    posZAxisHelper.scale.setScalar(0.3);\r\n    negZAxisHelper.scale.setScalar(0.2);\r\n    this.state.scene.add(posXAxisHelper);\r\n    this.state.scene.add(posYAxisHelper);\r\n    this.state.scene.add(posZAxisHelper);\r\n    this.state.scene.add(negXAxisHelper);\r\n    this.state.scene.add(negYAxisHelper);\r\n    this.state.scene.add(negZAxisHelper);\r\n    this.renderScene();\r\n    //start animation\r\n    this.start();\r\n  };\r\n\r\n  getAxisMaterial = (color) => {\r\n    return new THREE.MeshBasicMaterial({ color: color, toneMapped: false });\r\n  };\r\n\r\n  getSpriteMaterial = (color, text = null) => {\r\n    let canvas = document.createElement(\"canvas\");\r\n    canvas.width = 64;\r\n    canvas.height = 64;\r\n\r\n    let context = canvas.getContext(\"2d\");\r\n    context.beginPath();\r\n    context.arc(32, 32, 16, 0, 2 * Math.PI);\r\n    context.closePath();\r\n    context.fillStyle = color.getStyle();\r\n    context.fill();\r\n\r\n    if (text !== null) {\r\n      context.font = \"24px Arial\";\r\n      context.textAlign = \"center\";\r\n      context.fillStyle = \"#000000\";\r\n      context.fillText(text, 32, 41);\r\n    }\r\n    let texture = new THREE.CanvasTexture(canvas);\r\n\r\n    return new THREE.SpriteMaterial({ map: texture, toneMapped: false });\r\n  };\r\n\r\n  renderScene = () => {\r\n    if (this.state.renderer) {\r\n      let cameraPosition = new THREE.Vector3(0, 0, 1).applyQuaternion(\r\n        this.props.camera.quaternion\r\n      );\r\n      // let cube = this.state.scene.children[2];\r\n      let posXAxisHelper = this.state.scene.children[3];\r\n      let posYAxisHelper = this.state.scene.children[4];\r\n      let posZAxisHelper = this.state.scene.children[5];\r\n      let negXAxisHelper = this.state.scene.children[6];\r\n      let negYAxisHelper = this.state.scene.children[7];\r\n      let negZAxisHelper = this.state.scene.children[8];\r\n\r\n      if (cameraPosition.x >= 0) {\r\n        posXAxisHelper.material.opacity = 1;\r\n        negXAxisHelper.material.opacity = 0.5;\r\n      } else {\r\n        posXAxisHelper.material.opacity = 0.5;\r\n        negXAxisHelper.material.opacity = 1;\r\n      }\r\n      if (cameraPosition.y >= 0) {\r\n        posYAxisHelper.material.opacity = 1;\r\n        negYAxisHelper.material.opacity = 0.5;\r\n      } else {\r\n        posYAxisHelper.material.opacity = 0.5;\r\n        negYAxisHelper.material.opacity = 1;\r\n      }\r\n      if (cameraPosition.z >= 0) {\r\n        posZAxisHelper.material.opacity = 1;\r\n        negZAxisHelper.material.opacity = 0.5;\r\n      } else {\r\n        posZAxisHelper.material.opacity = 0.5;\r\n        negZAxisHelper.material.opacity = 1;\r\n      }\r\n\r\n      this.state.camera.position.set(\r\n        cameraPosition.x,\r\n        cameraPosition.y,\r\n        cameraPosition.z\r\n      );\r\n      this.state.camera.position.set(\r\n        cameraPosition.x,\r\n        cameraPosition.y,\r\n        cameraPosition.z\r\n      );\r\n      this.state.camera.lookAt(this.state.focusPoint);\r\n      this.state.renderer.render(this.state.scene, this.state.camera);\r\n    }\r\n  };\r\n\r\n  start = () => {\r\n    if (!this.frameId) {\r\n      this.frameId = requestAnimationFrame(this.animate);\r\n    }\r\n  };\r\n\r\n  stop = () => {\r\n    cancelAnimationFrame(this.frameId);\r\n  };\r\n\r\n  animate = () => {\r\n    //Animate Models Here\r\n    //ReDraw Scene with Camera and Scene Object\r\n    this.renderScene();\r\n    this.frameId = window.requestAnimationFrame(this.animate);\r\n  };\r\n\r\n  render() {\r\n    return (\r\n      <div\r\n        ref={(ref) => (this.mount = ref)}\r\n        style={{ position: \"absolute\", right: 0, bottom: 0 }}\r\n      />\r\n    );\r\n  }\r\n}\r\n\r\n// define the component's interface\r\nViewHelper.propTypes = {\r\n  viewHelperSize: PropTypes.number,\r\n  camera: PropTypes.object,\r\n};\r\n\r\nexport default ViewHelper;\r\n","// ... App.js\r\n\r\nimport React, { Component } from \"react\";\r\n\r\nimport PropTypes from \"prop-types\";\r\nimport { withSpinloader } from \"../../common/components/Spinloader\";\r\n\r\n// 3D-Viewer Libraries\r\nimport * as THREE from \"three\";\r\nimport { GLTFLoader } from \"three/examples/jsm/loaders/GLTFLoader\";\r\nimport { OrbitControls } from \"three/examples/jsm/controls/OrbitControls\";\r\nimport ViewHelper from \"./3DViewHelper\";\r\n\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n\r\nimport { FontAwesomeIcon } from \"@fortawesome/react-fontawesome\";\r\nimport { faInfo } from \"@fortawesome/free-solid-svg-icons\";\r\nimport { Typography } from \"@mui/material\";\r\n\r\n// Custom Components\r\nimport Backend from \"../../common/utils/Backend\";\r\n\r\nconst styles = {\r\n  root: {\r\n    pointerEvents: \"none\",\r\n    width: \"auto\",\r\n    maxWidth: \"600px\",\r\n    height: 46,\r\n\r\n    position: \"absolute\",\r\n    top: 10,\r\n    left: 5,\r\n    color: \"#ffffff\",\r\n\r\n    padding: 0,\r\n    \"& :active\": {\r\n      outline: \"\",\r\n    },\r\n    background: \"#000000AA\",\r\n    border: \"2px solid rgb(85, 85, 85)\",\r\n    borderRadius: 10,\r\n  },\r\n  barIcon: {\r\n    position: \"absolute\",\r\n    top: 2,\r\n    left: 0,\r\n    height: 36,\r\n    width: \"36px!important\",\r\n    padding: 8,\r\n    color: \"#ffffff\",\r\n  },\r\n  infoArea: {\r\n    paddingLeft: \"40px\",\r\n    paddingRight: \"10px\",\r\n    right: 0,\r\n    top: 0,\r\n    bottom: 0,\r\n    color: \"#fff\",\r\n  },\r\n};\r\n\r\nclass Viewer3D extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n\r\n    if (props.componentRef) props.componentRef(this);\r\n    this.state = {\r\n      width: 800,\r\n      height: 800,\r\n      viewHelperSize: 128,\r\n      mode: \"Loading\",\r\n      status: \"Loading\",\r\n    };\r\n    this.scene = new THREE.Scene();\r\n    this.renderer3D = new THREE.WebGLRenderer({ antialias: true });\r\n    this.camera = new THREE.PerspectiveCamera(75, 800 / 800, 0.1, 1000);\r\n  }\r\n\r\n  componentDidMount = () => {\r\n    const container = document.getElementById(\"3dViewerContainer\");\r\n    let width = container.offsetWidth;\r\n    let height = container.offsetHeight;\r\n    this.setState({ width });\r\n    this.setState({ height });\r\n\r\n    this.props.spinloader.show(20);\r\n\r\n    //Config Renderer\r\n    this.renderer3D.setClearColor(\"#263238\");\r\n    this.renderer3D.setSize(width, height);\r\n    this.renderer3D.outputEncoding = THREE.sRGBEncoding;\r\n    this.renderer3D.toneMappingExposure = 1.0;\r\n    this.mount.appendChild(this.renderer3D.domElement);\r\n    //Config Camera\r\n    this.camera.position.set(0, 0, 500);\r\n    this.camera.lookAt(0, 0, 0);\r\n    this.camera.aspect = width / height;\r\n    this.camera.updateProjectionMatrix();\r\n    // add Light to camera and scene\r\n    let color = 0xffffff;\r\n    let intensity = 1;\r\n    let light = new THREE.DirectionalLight(color, intensity);\r\n    light.position.set(0.5, 0, 0.866);\r\n    this.camera.add(light);\r\n    this.scene.add(this.camera);\r\n\r\n    color = 0x222222;\r\n    light = new THREE.AmbientLight(color, intensity);\r\n    this.scene.add(light);\r\n\r\n    //Camera Controls\r\n    this.controls = new OrbitControls(this.camera, this.renderer3D.domElement);\r\n    //LIGHTS\r\n\r\n    // add GridHelper\r\n    // const size = 100;\r\n    // const divisions = 20;\r\n    // const gridHelper = new THREE.GridHelper(size, divisions);\r\n    // this.scene.add(gridHelper);\r\n\r\n    // Get variables for analysis\r\n    const fileId = this.props.fileId;\r\n    const projectId = this.props.projectId;\r\n    const minZ = this.props.minZ;\r\n    const maxZ = this.props.maxZ;\r\n    const zRange = minZ + \",\" + maxZ;\r\n    const showPointCloud = this.props.showPointCloud;\r\n\r\n    const data = {\r\n      fileId,\r\n      projectId,\r\n      zRange,\r\n      showPointCloud,\r\n    };\r\n\r\n    // Render Scene\r\n    this.renderScene();\r\n    //start animation\r\n    this.start();\r\n\r\n    // Adding 3D-Models\r\n    let res = Backend.get3dObjects(data);\r\n    const gltfLoader = new GLTFLoader();\r\n\r\n    gltfLoader.load(\r\n      // \"./assets3d/Horse.glb\",\r\n      res,\r\n      (gltf) => {\r\n        const box = new THREE.Box3().setFromObject(gltf.scene);\r\n        const center = box.getCenter(new THREE.Vector3());\r\n\r\n        gltf.scene.position.x += gltf.scene.position.x - center.x;\r\n        gltf.scene.position.y += gltf.scene.position.y - center.y;\r\n        gltf.scene.position.z += gltf.scene.position.z - center.z;\r\n\r\n        gltf.scene.name = \"object_scene\";\r\n\r\n        this.scene.add(gltf.scene);\r\n        this.renderScene();\r\n        this.setState({ status: \"\" });\r\n        this.props.spinloader.hide();\r\n      },\r\n      // called while loading is progressing\r\n      () => {},\r\n      // called when loading has errors\r\n      (error) => {\r\n        console.log(\"An error happened\");\r\n        console.log(error);\r\n        this.setState({ status: \"ERROR\", mode: \"ERROR\" });\r\n        this.props.spinloader.hide();\r\n      }\r\n    );\r\n\r\n    Backend.get3DAllObjectsExists(data, (res) => {\r\n      if (res === \"True\") {\r\n        this.setState({ mode: \"Job results\" });\r\n      } else {\r\n        this.setState({ mode: \"Histogram Preview\" });\r\n      }\r\n    });\r\n  };\r\n\r\n  componentDidUpdate(prevProps) {\r\n    if (prevProps.showPointCloud !== this.props.showPointCloud) {\r\n      this.load3DObject(this.props.showPointCloud);\r\n    }\r\n  }\r\n\r\n  load3DObject = (showPointCloud) => {\r\n    this.props.spinloader.show(20);\r\n\r\n    let selectedObject = this.scene.getObjectByName(\"object_scene\");\r\n    this.scene.remove(selectedObject);\r\n    console.log(\"showProintCloud\", showPointCloud);\r\n\r\n    // Get variables for analysis\r\n    const fileId = this.props.fileId;\r\n    const projectId = this.props.projectId;\r\n    const minZ = this.props.minZ;\r\n    const maxZ = this.props.maxZ;\r\n    const zRange = minZ + \",\" + maxZ;\r\n\r\n    const data = {\r\n      fileId,\r\n      projectId,\r\n      zRange,\r\n      showPointCloud,\r\n    };\r\n\r\n    // Adding 3D-Models\r\n    let res = Backend.get3dObjects(data);\r\n    const gltfLoader = new GLTFLoader();\r\n\r\n    gltfLoader.load(\r\n      // \"./assets3d/Horse.glb\",\r\n      res,\r\n      (gltf) => {\r\n        const box = new THREE.Box3().setFromObject(gltf.scene);\r\n        const center = box.getCenter(new THREE.Vector3());\r\n\r\n        gltf.scene.position.x += gltf.scene.position.x - center.x;\r\n        gltf.scene.position.y += gltf.scene.position.y - center.y;\r\n        gltf.scene.position.z += gltf.scene.position.z - center.z;\r\n\r\n        gltf.scene.name = \"object_scene\";\r\n\r\n        this.scene.add(gltf.scene);\r\n        this.renderScene();\r\n        this.setState({ status: \"\" });\r\n        this.props.spinloader.hide();\r\n      },\r\n      // called while loading is progressing\r\n      () => {},\r\n      // called when loading has errors\r\n      (error) => {\r\n        console.log(\"An error happened\");\r\n        console.log(error);\r\n        this.setState({ status: \"ERROR\", mode: \"ERROR\" });\r\n        this.props.spinloader.hide();\r\n      }\r\n    );\r\n  };\r\n\r\n  start = () => {\r\n    if (!this.frameId) {\r\n      this.frameId = requestAnimationFrame(this.animate);\r\n    }\r\n  };\r\n\r\n  stop = () => {\r\n    cancelAnimationFrame(this.frameId);\r\n  };\r\n\r\n  animate = () => {\r\n    //Animate Models Here\r\n    //ReDraw Scene with Camera and Scene Object\r\n    this.renderScene();\r\n    this.frameId = window.requestAnimationFrame(this.animate);\r\n  };\r\n\r\n  renderScene = () => {\r\n    if (this.renderer3D) {\r\n      this.renderer3D.render(this.scene, this.camera);\r\n    }\r\n  };\r\n\r\n  render() {\r\n    const { classes } = this.props;\r\n    return (\r\n      <div id=\"3dViewerContainer\" style={{ width: \"100%\", height: \"100%\" }}>\r\n        <ViewHelper\r\n          viewHelperSize={this.state.viewHelperSize}\r\n          camera={this.camera}\r\n        />\r\n\r\n        <div className={classes.root}>\r\n          <FontAwesomeIcon className={classes.barIcon} icon={faInfo} />\r\n          <div className={classes.infoArea}>\r\n            <Typography color=\"inherit\" noWrap={true}>\r\n              {this.state.mode}\r\n            </Typography>\r\n            <Typography color=\"inherit\" noWrap={true} style={{ fontSize: 8 }}>\r\n              {this.state.status}\r\n            </Typography>\r\n          </div>\r\n        </div>\r\n\r\n        <div ref={(ref) => (this.mount = ref)} />\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\n// define the component's interface\r\nViewer3D.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  fileId: PropTypes.string,\r\n  ome: PropTypes.object,\r\n  projectId: PropTypes.string,\r\n  minZ: PropTypes.number,\r\n  maxZ: PropTypes.number,\r\n  showPointCloud: PropTypes.bool,\r\n  componentRef: PropTypes.object,\r\n  spinloader: PropTypes.object,\r\n};\r\n\r\n// const rootElement = document.getElementById(\"root\")\r\n// ReactDOM.render(<Viewer3D />, rootElement);\r\nexport default withSpinloader(withStyles(styles)(Viewer3D));\r\n","class Tool {\r\n  name = \"Tool Display Name\";\r\n  flag = false;\r\n  prevX = 0;\r\n  currX = 0;\r\n  prevY = 0;\r\n  currY = 0;\r\n  downScale = 2;\r\n\r\n  setLayer() {}\r\n\r\n  setPreviewRect() {}\r\n\r\n  initDrawing() {}\r\n\r\n  updateDrawing() {}\r\n\r\n  mouse() {}\r\n\r\n  drawCustomCursor() {}\r\n\r\n  renderConfiguration() {}\r\n\r\n  exit() {}\r\n}\r\n\r\nexport default Tool;\r\n","import React, { Component } from \"react\";\r\n\r\nimport { FormLabel, FormControl, Button, Typography } from \"@mui/material\";\r\nimport Tool from \"./Tool\";\r\n\r\nclass ActiveLearningTool extends Tool {\r\n  name = \"Active Learning\";\r\n\r\n  setLayer(obj) {\r\n    this.id = obj.fileId;\r\n    this.layer = obj.layer;\r\n    this.ome = obj.ome;\r\n    this.projectId = obj.projectId;\r\n    this.roiLayers = obj.roiLayers;\r\n    this.structures = obj.structures;\r\n    this.selectedLayer = obj.selectedLayer;\r\n\r\n    if (obj.structures[obj.selectedLayer]) {\r\n      this.toolLayerConfig = obj.structures[obj.selectedLayer].tools.find(\r\n        (c) => c.name === this.toolConfig.name\r\n      );\r\n    }\r\n\r\n    if (typeof this.toolLayerConfig !== \"undefined\")\r\n      Object.assign(this.state, this.toolLayerConfig.parameters);\r\n  }\r\n  setPreviewRect() {}\r\n\r\n  exit() {}\r\n\r\n  renderConfiguration() {\r\n    return (\r\n      <div>\r\n        <Typography variant=\"h6\">{this.name}:</Typography>\r\n        <ConfigForm\r\n          ome={this.ome}\r\n          toolConfig={this.toolConfig}\r\n          state={this.state}\r\n          onChange={this.onChange}\r\n          structures={this.structures}\r\n          selectedLayer={this.selectedLayer}\r\n          onApply={(component) => {\r\n            return this.state.preview\r\n              ? this.calcPreview(component)\r\n              : this.calcFull(component);\r\n          }}\r\n        />\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nclass ConfigForm extends Component {\r\n  render() {\r\n    return (\r\n      <div>\r\n        <FormControl component=\"fieldset\" fullWidth>\r\n          <FormLabel component=\"legend\">\r\n            <Button\r\n              style={{ marginTop: \"5px\" }}\r\n              fullWidth\r\n              variant=\"contained\"\r\n              color=\"primary\" /*onClick={() => onApply(this)}*/\r\n            >\r\n              Start\r\n            </Button>\r\n          </FormLabel>\r\n        </FormControl>\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nexport default ActiveLearningTool;\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\nimport MUIDataTable from \"mui-datatables\";\r\n\r\n// define the component's styling\r\nconst styles = () => ({\r\n  dataTable: {\r\n    boxShadow: \"none !important\",\r\n    \"& .MuiTableSortLabel-active\": {\r\n      height: \"auto !important\",\r\n    },\r\n  },\r\n});\r\n\r\nconst handleRowClick = () => {\r\n  // console.log(rowData, rowMeta);\r\n};\r\n\r\nconst columns = [\r\n  {\r\n    name: \"name\",\r\n    label: \"Name\",\r\n    options: {\r\n      filter: true,\r\n      sort: false,\r\n    },\r\n  },\r\n  {\r\n    name: \"structure\",\r\n    label: \"Structure\",\r\n    options: {\r\n      filter: true,\r\n      sort: false,\r\n    },\r\n  },\r\n  {\r\n    name: \"datetime\",\r\n    label: \"Date created\",\r\n    options: {\r\n      filter: true,\r\n      sort: true,\r\n    },\r\n  },\r\n  {\r\n    name: \"validationloss\",\r\n    label: \"Validation Loss\",\r\n    options: {\r\n      filter: false,\r\n      sort: true,\r\n    },\r\n  },\r\n  {\r\n    name: \"validationmiou\",\r\n    label: \"Validation Mean IoU\",\r\n    options: {\r\n      filter: false,\r\n      sort: true,\r\n    },\r\n  },\r\n  {\r\n    name: \"epochs\",\r\n    label: \"Epochs\",\r\n    options: {\r\n      filter: false,\r\n      sort: true,\r\n    },\r\n  },\r\n  {\r\n    name: \"trainingObjectsCount\",\r\n    label: \"Object Count\",\r\n    options: {\r\n      filter: false,\r\n      sort: true,\r\n    },\r\n  },\r\n  {\r\n    name: \"modelType\",\r\n    label: \"Model Type\",\r\n    options: {\r\n      filter: false,\r\n      sort: true,\r\n    },\r\n  },\r\n];\r\n\r\nclass AIModelDialogTable extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n    this.state = {\r\n      selected: [],\r\n    };\r\n  }\r\n\r\n  render() {\r\n    const { data, classes } = this.props;\r\n\r\n    const options = {\r\n      sortOrder: {\r\n        name: \"datetime\",\r\n        direction: \"desc\",\r\n      },\r\n      filter: true,\r\n      filterType: \"dropdown\",\r\n      print: false,\r\n      download: false,\r\n      responsive: \"standard\",\r\n      rowsSelected: this.props.rowsSelected,\r\n      selectToolbarPlacement: \"none\",\r\n      draggableColumns: {\r\n        enabled: true,\r\n      },\r\n      tableBodyMaxHeight: \"auto\",\r\n      onRowSelectionChange: (currentRowsSelected) => {\r\n        let selectedObject = this.props.rowsSelected;\r\n        if (currentRowsSelected[0] != null && currentRowsSelected.length < 2) {\r\n          if (!selectedObject.includes(currentRowsSelected[0].dataIndex)) {\r\n            selectedObject.push(currentRowsSelected[0].dataIndex);\r\n          } else {\r\n            var index = selectedObject.indexOf(\r\n              currentRowsSelected[0].dataIndex\r\n            );\r\n            if (index > -1) {\r\n              selectedObject.splice(index, 1);\r\n            }\r\n          }\r\n        } else selectedObject = [];\r\n        this.props.handleSelectedAIModels(selectedObject);\r\n        if (selectedObject.length > 0) {\r\n          this.props.handleAddButton(false);\r\n        } else this.props.handleAddButton(true);\r\n      },\r\n      onRowClick: handleRowClick,\r\n      textLabels: {\r\n        body: {\r\n          noMatch: \"Sorry, no matching AIModels found\",\r\n          toolTip: \"Sort\",\r\n          columnHeaderTooltip: (column) => `Sort for ${column.label}`,\r\n        },\r\n        pagination: {\r\n          next: \"Next Page\",\r\n          previous: \"Previous Page\",\r\n          rowsPerPage: \"Rows per page:\",\r\n          displayRows: \"of\",\r\n        },\r\n        toolbar: {\r\n          search: \"Search\",\r\n          downloadCsv: \"Download CSV\",\r\n          print: \"Print\",\r\n          viewColumns: \"View Columns\",\r\n          filterTable: \"Filter Table\",\r\n        },\r\n        filter: {\r\n          all: \"All\",\r\n          title: \"Filters\",\r\n          reset: \"Reset\",\r\n        },\r\n        viewColumns: {\r\n          title: \"Show Columns\",\r\n          titleAria: \"Show/Hide Table Columns\",\r\n        },\r\n        selectedRows: {\r\n          text: \"row(s) selected\",\r\n          delete: \"Delete\",\r\n          deleteAria: \"Delete Selected Rows\",\r\n        },\r\n      },\r\n    };\r\n\r\n    return (\r\n      <MUIDataTable\r\n        className={classes.dataTable}\r\n        data={data\r\n          .filter((x) => x.verified != true)\r\n          .map((row) => {\r\n            return {\r\n              name: row.name,\r\n              structure: row.versions[0] ? row.versions[0].structure : \"-\",\r\n              validationloss:\r\n                row.versions[0] && row.versions[0].validationloss !== 1\r\n                  ? row.versions[0].validationloss\r\n                  : \"-\",\r\n              validationmiou:\r\n                row.versions[0] && row.versions[0].validationmeaniou !== 1\r\n                  ? row.versions[0].validationmeaniou\r\n                  : \"-\",\r\n              trainingObjectsCount: row.versions[0]\r\n                ? row.versions[0].trainingobjectscount\r\n                : \"-\",\r\n              epochs:\r\n                row.versions[0] && row.versions[0].epochs !== 0\r\n                  ? row.versions[0].epochs\r\n                  : \"-\",\r\n              datetime: row.versions[0] ? row.versions[0].datetime : \"-\",\r\n              modelType: row.versions[0] ? row.versions[0].modeltype : \"-\",\r\n            };\r\n          })}\r\n        columns={columns}\r\n        options={options}\r\n      />\r\n    );\r\n  }\r\n}\r\n\r\n// define the component's interface\r\nAIModelDialogTable.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  data: PropTypes.array,\r\n  rowsSelected: PropTypes.array,\r\n  handleSelectedAIModels: PropTypes.func,\r\n  handleAddButton: PropTypes.func,\r\n};\r\n\r\nexport default withStyles(styles)(AIModelDialogTable);\r\n","import React, { Component } from \"react\";\r\nimport Button from \"@mui/material/Button\";\r\nimport Dialog from \"@mui/material/Dialog\";\r\nimport DialogActions from \"@mui/material/DialogActions\";\r\nimport DialogContent from \"@mui/material/DialogContent\";\r\nimport DialogContentText from \"@mui/material/DialogContentText\";\r\nimport DialogTitle from \"@mui/material/DialogTitle\";\r\nimport Slide from \"@mui/material/Slide\";\r\nimport {\r\n  MenuItem,\r\n  Select,\r\n  InputLabel,\r\n  Grid,\r\n  FormControlLabel,\r\n  Checkbox,\r\n  Tooltip,\r\n  FormControl,\r\n} from \"@mui/material\";\r\nimport AddCircleOutlineIcon from \"@mui/icons-material/AddCircleOutline\";\r\nimport Backend from \"../../common/utils/Backend\";\r\nimport Draggable from \"react-draggable\";\r\nimport Paper from \"@mui/material/Paper\";\r\nimport AIModelDialogTable from \"../components/AIModelDialogTable\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\nimport PropTypes from \"prop-types\";\r\nimport CircularProgress from \"@mui/material/CircularProgress\";\r\n\r\nimport { withRouter } from \"react-router-dom\";\r\n\r\n// define the component's styling\r\nconst styles = () => ({\r\n  selectContent: {\r\n    \"& .MuiSelect-root\": {\r\n      minWidth: \"200px\",\r\n      width: \"auto\",\r\n    },\r\n  },\r\n  dialogContent: {\r\n    overflowY: \"hidden\",\r\n    minHeight: \"100%\",\r\n  },\r\n  gridContent: {\r\n    padding: \"30px\",\r\n  },\r\n  tableDialog: {\r\n    \"& .MuiPaper-root\": {\r\n      maxWidth: \"none\",\r\n    },\r\n  },\r\n  modelSelectionContainer: {},\r\n  addCustomAIModelButton: {\r\n    textAlign: \"left\",\r\n    cursor: \"pointer\",\r\n    margin: 15,\r\n  },\r\n  addCustomAIModelText: {\r\n    fontWeight: \"bold\",\r\n    position: \"relative\",\r\n    marginLeft: 10,\r\n    top: 2,\r\n  },\r\n  modelInformationContainer: {\r\n    height: \"100%\",\r\n  },\r\n});\r\n\r\nfunction PaperComponent(props) {\r\n  return (\r\n    <Draggable\r\n      handle=\"#draggable-dialog-title\"\r\n      cancel={'[class*=\"MuiDialogContent-root\"]'}\r\n    >\r\n      <Paper {...props} />\r\n    </Draggable>\r\n  );\r\n}\r\n\r\nconst Transition = React.forwardRef(function Transition(props, ref) {\r\n  return <Slide direction=\"up\" ref={ref} {...props} />;\r\n});\r\n\r\nclass AIModelDialog extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n    this.state = {\r\n      open: false,\r\n      selectedAIModels: [],\r\n      addButtonDisabled: true,\r\n      existingAIModels: [],\r\n      selectedModel: null,\r\n      selectedModelIdx: null,\r\n      selectedModelSourcepath: undefined,\r\n      selectedVersion: null,\r\n      trainExistingModel: false,\r\n      modelsInitialized: false,\r\n    };\r\n    this.data = [];\r\n  }\r\n\r\n  handleSelectedAIModels = (value) => {\r\n    this.setState({ selectedAIModels: value });\r\n  };\r\n\r\n  handleAddButton = (value) => {\r\n    this.setState({ addButtonDisabled: value });\r\n  };\r\n\r\n  render() {\r\n    const { classes, dialog, history } = this.props;\r\n    const existingAIModels = this.state.existingAIModels;\r\n\r\n    //TODO remove this with properly with all references, since AICockpit is not used anymore\r\n    const handleClickOpen = () => {\r\n      if (window) {\r\n        history.push(\"/ai_view\");\r\n        return;\r\n      }\r\n      this.setState({ open: true });\r\n      Backend.getModelMetadata(\"unverified_models\", false, (result) => {\r\n        this.data = result;\r\n        this.setState({\r\n          modelsInitialized: true,\r\n        });\r\n        this.forceUpdate();\r\n      });\r\n    };\r\n\r\n    const handleClickOpenExistingModels = () => {\r\n      if (!this.state.trainExistingModel) {\r\n        this.setState({\r\n          open: true,\r\n          trainExistingModel: !this.state.trainExistingModel,\r\n        });\r\n        this.setState({ existingAIModels: this.props.existingAIModels });\r\n      } else\r\n        this.setState({ trainExistingModel: !this.state.trainExistingModel });\r\n    };\r\n\r\n    const handleSelectModel = (event) => {\r\n      let selectedVersion = null;\r\n      if (existingAIModels.aiModels[event.target.value - 1].versions)\r\n        selectedVersion =\r\n          existingAIModels.aiModels[event.target.value - 1].versions.slice(\r\n            -1\r\n          )[0].label;\r\n      this.setState({\r\n        selectedModel: event.target.value,\r\n        selectedVersion: selectedVersion,\r\n      });\r\n    };\r\n\r\n    const handleSelectVersion = (event) => {\r\n      this.setState({ selectedVersion: event.target.value });\r\n    };\r\n\r\n    const handleClose = (e) => {\r\n      if (this.state.selectedModel == null) {\r\n        this.setState({ trainExistingModel: false });\r\n      }\r\n      this.setState({ open: false });\r\n      e.preventDefault();\r\n      this.setState({ selectedAIModels: [], addButtonDisabled: true });\r\n    };\r\n\r\n    const finishAddCustomAIModels = (result) => {\r\n      console.log(\"finishAddCustomAIModels()\", result);\r\n      this.setState({ selectedAIModels: [], addButtonDisabled: true });\r\n      if (result.successful) {\r\n        window.showSuccessSnackbar(result.information);\r\n        this.props.initAIFormData(false);\r\n      } else window.showErrorSnackbar(result.information);\r\n    };\r\n\r\n    const handleAdd = (e) => {\r\n      this.setState({ open: false });\r\n      e.preventDefault();\r\n      this.customAIModelsAdded = 0;\r\n      for (let i = 0; i < this.state.selectedAIModels.length; i++) {\r\n        var selectedAiModel = this.data.filter((x) => x.verified != true)[\r\n          this.state.selectedAIModels[i]\r\n        ];\r\n        var aiModel = {\r\n          sourcepath: selectedAiModel.versions[0]\r\n            ? selectedAiModel.versions[0].sourcepath\r\n            : \"-\",\r\n          name: selectedAiModel.name,\r\n        };\r\n        Backend.addCustomAIModels(\r\n          JSON.stringify(aiModel),\r\n          finishAddCustomAIModels\r\n        );\r\n      }\r\n    };\r\n\r\n    const handleRemove = (e) => {\r\n      e.preventDefault();\r\n      window.openResponseDialog(\r\n        \"Delete the models permanently?\",\r\n        (response) => {\r\n          if (response) {\r\n            for (let i = 0; i < this.state.selectedAIModels.length; i++) {\r\n              Backend.deleteCustomAIModels(\r\n                this.data[this.state.selectedAIModels[i]].name,\r\n                () => {\r\n                  this.setState({\r\n                    selectedAIModels: [],\r\n                    addButtonDisabled: true,\r\n                  });\r\n                  this.forceUpdate();\r\n                }\r\n              );\r\n              Backend.getModelMetadata(\"unverified_models\", false, (result) => {\r\n                this.data = result.filter((x) => x.verified != true);\r\n                this.setState({\r\n                  modelsInitialized: true,\r\n                });\r\n                this.forceUpdate();\r\n              });\r\n            }\r\n          }\r\n        }\r\n      );\r\n    };\r\n\r\n    // send selected exisiting model to AITrainingTool.jsx (parent)\r\n    const handleAddExistingModel = (e) => {\r\n      let selectedModelInformation = [\r\n        this.state.existingAIModels.aiModels[this.state.selectedModel - 1]\r\n          .label,\r\n        this.state.selectedVersion,\r\n      ];\r\n\r\n      Backend.getSelectedModelSourcepath(selectedModelInformation, (value) => {\r\n        this.props.setSelectedExistingModel(value);\r\n      });\r\n      handleClose(e);\r\n    };\r\n\r\n    return (\r\n      <div className={classes.modelSelectionContainer}>\r\n        {dialog === \"AIDataTable\" && (\r\n          <div className={classes.modelInformationContainer}>\r\n            <div\r\n              onClick={handleClickOpen}\r\n              className={classes.addCustomAIModelButton}\r\n            >\r\n              <AddCircleOutlineIcon fontSize=\"default\" />\r\n              <span className={classes.addCustomAIModelText}>\r\n                Add Custom AI Model\r\n              </span>\r\n            </div>\r\n            <Dialog\r\n              open={this.state.open}\r\n              TransitionComponent={Transition}\r\n              keepMounted\r\n              onClose={handleClose}\r\n              PaperComponent={PaperComponent}\r\n              className={classes.tableDialog}\r\n            >\r\n              <DialogTitle\r\n                style={{ cursor: \"move\" }}\r\n                id=\"draggable-dialog-title\"\r\n              >\r\n                Custom Trained AI Models\r\n              </DialogTitle>\r\n              <DialogContent className={classes.dialogContent}>\r\n                <DialogContentText>\r\n                  Select the previously trained AI Model\r\n                </DialogContentText>\r\n              </DialogContent>\r\n              {this.state.modelsInitialized ? (\r\n                <AIModelDialogTable\r\n                  data={this.data}\r\n                  rowsSelected={this.state.selectedAIModels}\r\n                  handleSelectedAIModels={this.handleSelectedAIModels}\r\n                  handleAddButton={this.handleAddButton}\r\n                />\r\n              ) : (\r\n                <div\r\n                  style={{\r\n                    width: \"100%\",\r\n                    height: \"100%\",\r\n                    padding: \"20px\",\r\n                    textAlign: \"center\",\r\n                  }}\r\n                >\r\n                  <CircularProgress />\r\n                </div>\r\n              )}\r\n              <DialogActions>\r\n                <Button onClick={handleClose} color=\"primary\">\r\n                  Cancel\r\n                </Button>\r\n                <Button\r\n                  onClick={handleRemove}\r\n                  disabled={this.state.addButtonDisabled}\r\n                  style={{\r\n                    color: this.state.addButtonDisabled\r\n                      ? \"rgba(0, 0, 0, 0.26)\"\r\n                      : \"red\",\r\n                  }}\r\n                >\r\n                  Remove\r\n                </Button>\r\n                <Button\r\n                  onClick={handleAdd}\r\n                  color=\"primary\"\r\n                  disabled={this.state.addButtonDisabled}\r\n                >\r\n                  Add\r\n                </Button>\r\n              </DialogActions>\r\n            </Dialog>\r\n          </div>\r\n        )}\r\n        {dialog === \"AISelectExistingModel\" && (\r\n          <div>\r\n            <FormControl component=\"fieldset\" fullWidth>\r\n              <Tooltip\r\n                disableInteractive\r\n                title=\"Loads the weights of the existing model and continues training\"\r\n                placement=\"left\"\r\n              >\r\n                <div>\r\n                  <FormControlLabel\r\n                    control={\r\n                      <Checkbox\r\n                        name=\"CheckboxUseModel\"\r\n                        color=\"primary\"\r\n                        checked={this.state.trainExistingModel}\r\n                        onChange={handleClickOpenExistingModels}\r\n                      />\r\n                    }\r\n                    label=\"Train existing model\"\r\n                  />\r\n                </div>\r\n              </Tooltip>\r\n            </FormControl>\r\n            <Dialog\r\n              open={this.state.open}\r\n              TransitionComponent={Transition}\r\n              keepMounted\r\n              onClose={handleClose}\r\n              PaperComponent={PaperComponent}\r\n              className={classes.tableDialog}\r\n            >\r\n              <DialogTitle\r\n                style={{ cursor: \"move\" }}\r\n                id=\"draggable-dialog-title\"\r\n              >\r\n                AI Models\r\n              </DialogTitle>\r\n              <DialogContent className={classes.dialogContent}>\r\n                <DialogContentText>\r\n                  Select an existing model and version to initialize them for\r\n                  further training.\r\n                </DialogContentText>\r\n              </DialogContent>\r\n\r\n              <Grid container>\r\n                <Grid item xs={6} className={classes.gridContent}>\r\n                  <InputLabel>Select Model</InputLabel>\r\n                  <Select\r\n                    name=\"SelectModel\"\r\n                    label=\"Select Model\"\r\n                    className={classes.selectContent}\r\n                    value={this.state.selectedModel || \"null\"}\r\n                    onChange={handleSelectModel}\r\n                    variant=\"outlined\"\r\n                  >\r\n                    <MenuItem value=\"null\" disabled>\r\n                      <em>Select Model ...</em>\r\n                    </MenuItem>\r\n                    {existingAIModels.aiModels &&\r\n                      existingAIModels.aiModels.map((model, idx) => {\r\n                        return (\r\n                          <MenuItem key={idx} value={idx + 1}>\r\n                            {model.label}\r\n                          </MenuItem>\r\n                        );\r\n                      })}\r\n                  </Select>\r\n                </Grid>\r\n                <Grid item xs={6} className={classes.gridContent}>\r\n                  <InputLabel>Select Version</InputLabel>\r\n                  <Select\r\n                    name=\"SelectVersion\"\r\n                    label=\"Select Version\"\r\n                    value={this.state.selectedVersion || \"null\"}\r\n                    className={classes.selectContent}\r\n                    onChange={handleSelectVersion}\r\n                    disabled={this.state.selectedModel === null}\r\n                  >\r\n                    <MenuItem value=\"null\" disabled>\r\n                      <em>Select Version ...</em>\r\n                    </MenuItem>\r\n                    {this.state.selectedModel &&\r\n                      existingAIModels.aiModels &&\r\n                      existingAIModels.aiModels.length > 0 &&\r\n                      existingAIModels.aiModels[\r\n                        this.state.selectedModel - 1\r\n                      ].versions.map((version, idx) => (\r\n                        <MenuItem key={idx} value={version.label}>\r\n                          {version.label}\r\n                        </MenuItem>\r\n                      ))}\r\n                  </Select>\r\n                </Grid>\r\n              </Grid>\r\n\r\n              <DialogActions>\r\n                <Button onClick={handleClose} color=\"primary\">\r\n                  Cancel\r\n                </Button>\r\n                <Button\r\n                  onClick={handleAddExistingModel}\r\n                  color=\"primary\"\r\n                  disabled={this.state.selectedVersion === null}\r\n                >\r\n                  Okay\r\n                </Button>\r\n              </DialogActions>\r\n            </Dialog>\r\n          </div>\r\n        )}\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\n// define the component's interface\r\nAIModelDialog.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  dialog: PropTypes.string,\r\n  handleOptionsClose: PropTypes.func,\r\n  structures: PropTypes.array,\r\n  formDataAICockpit: PropTypes.object,\r\n  setAvailableModels: PropTypes.func,\r\n  setFormDataAICockpit: PropTypes.func,\r\n  initAIFormData: PropTypes.func,\r\n  existingAIModels: PropTypes.array,\r\n  setSelectedExistingModel: PropTypes.func,\r\n  history: PropTypes.object,\r\n};\r\n\r\nexport default withRouter(withStyles(styles)(AIModelDialog));\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport {\r\n  Button,\r\n  FormControl,\r\n  TextField,\r\n  LinearProgress,\r\n  Typography,\r\n} from \"@mui/material\";\r\nimport Backend from \"../../../common/utils/Backend\";\r\nimport { withSpinloader } from \"../../../common/components/Spinloader\";\r\nimport Tool from \"./Tool\";\r\nimport PlayArrowRoundedIcon from \"@mui/icons-material/PlayArrowRounded\";\r\nimport ReplayRoundedIcon from \"@mui/icons-material/ReplayRounded\";\r\nimport AIModelDialog from \"../../../home/dialogs/AIModelDialog\";\r\n\r\nclass AITrainingTool extends Tool {\r\n  constructor(viewer) {\r\n    super();\r\n    this.name = \"AI Training\";\r\n    this.state = {\r\n      preview: false,\r\n      hideStartTraining: false,\r\n      errorEpochs: false,\r\n      errorAIName: false,\r\n      epochs: \"\",\r\n      openTrainExistingDialog: false,\r\n      selectedExistingModel: \"\",\r\n      selectedExistingModelSourcepath: \"\",\r\n      existingAIModels: [],\r\n      stepsProgress: \"-\",\r\n      epochsProgress: \"-\",\r\n      lossProgress: \"-\",\r\n      meanIoUProgress: \"-\",\r\n      vallossProgress: \"-\",\r\n      valmeanIoUProgress: \"-\",\r\n      buildingModelText: \"-\",\r\n      showTrainingProgress: false,\r\n      showOptimizationProgress: false,\r\n    };\r\n    this.viewer = viewer;\r\n    // Backend.getAIModelRepository(false, (existingAIModels) => {\r\n    //   this.state.existingAIModels = existingAIModels;\r\n    // });\r\n  }\r\n\r\n  updateTrainingProgress = (line) => {\r\n    if (line.includes(\"Epoch\")) {\r\n      this.state.buildingModel = false;\r\n      this.state.showDownloadProgress = false;\r\n      this.state.showTrainingProgress = true;\r\n      this.state.epochsProgress = line.split(\"Epoch\")[1];\r\n    } else if (line.includes(\"creating dataset...\")) {\r\n      this.state.showDownloadProgress = false;\r\n      this.state.hideStartTraining = true;\r\n      this.state.buildingModelText = \"Creating dataset...\";\r\n      this.state.buildingModel = true;\r\n    } else if (line.includes(\"loading dataset\")) {\r\n      this.state.hideStartTraining = true;\r\n      this.state.buildingModelText = \"Creating dataset...\";\r\n      this.state.buildingModel = true;\r\n    } else if (line.includes(\"start training\")) {\r\n      this.state.hideStartTraining = true;\r\n      this.state.buildingModel = false;\r\n      this.state.showDownloadProgress = false;\r\n      this.state.showTrainingProgress = true;\r\n    } else if (line.includes(\"loss:\")) {\r\n      this.state.buildingModel = false;\r\n      this.state.stepsProgress = line.split(\"[\")[0];\r\n      this.state.lossProgress = parseFloat(\r\n        line.split(\"loss:\")[1].split(\" \")[1],\r\n        10\r\n      ).toString();\r\n      this.state.meanIoUProgress = line.split(\"loss:\")[1].split(\" \")[4];\r\n    } else if (line.includes(\"training done!!!\")) {\r\n      this.state.trainingFinished = true;\r\n      this.state.showOptimizationProgress = false;\r\n    } else if (line.includes(\"training failed!!!\"))\r\n      this.state.trainingFailed = true;\r\n    else if (line.includes(\"time elapsed:\"))\r\n      this.state.elapsedTime = line.substring(0, line.indexOf(\".\")) + \"s\";\r\n    else if (line.includes(\"optimization progress:\")) {\r\n      this.state.modelOptimizeProgress = line\r\n        .split(\"optimization progress:\")[1]\r\n        .split(\"%\")[0];\r\n      this.state.showOptimizationProgress = true;\r\n    } else if (line.includes(\"Downloading model from:\")) {\r\n      this.state.hideStartTraining = true;\r\n      this.state.modelDownloadProgress = 0;\r\n      this.state.buildingModel = false;\r\n      this.state.showDownloadProgress = true;\r\n    } else if (line.includes(\"[DownloadProgress]\")) {\r\n      this.state.modelDownloadProgress = line\r\n        .split(\"[DownloadProgress]\")[1]\r\n        .split(\"%\")[0];\r\n    } else if (line.includes(\"building model ...\")) {\r\n      this.state.buildingModelText = \"Building model...\";\r\n    } else if (\r\n      line.includes(\"No trainingdata, please annotate at least 15+ objects\")\r\n    ) {\r\n      this.state.buildingModel = false;\r\n      this.state.showTrainingProgress = false;\r\n      this.state.hideStartTraining = false;\r\n      this.state.trainingFinished = false;\r\n      this.state.trainingFailed = false;\r\n      this.state.epochsProgress = \"\";\r\n      this.state.stepsProgress = \"\";\r\n      this.state.meanIoUProgress = \"\";\r\n      this.state.lossProgress = \"\";\r\n      this.state.valmeanIoUProgress = \"\";\r\n      this.state.vallossProgress = \"\";\r\n    }\r\n    if (line.includes(\"val_loss:\")) {\r\n      this.state.vallossProgress = parseFloat(\r\n        line.split(\"val_loss:\")[1].split(\" \")[1],\r\n        10\r\n      ).toString();\r\n      this.state.valmeanIoUProgress = line.split(\"val_loss:\")[1].split(\" \")[4];\r\n    }\r\n    this.configForm.setState(this.state);\r\n  };\r\n\r\n  /**\r\n   * Update File Specific information\r\n   * @param {Object} layer\r\n   * @param {Object} ome\r\n   * @param {String} fileId\r\n   * @param {String} projectId\r\n   * @param {Object[]} roiLayers\r\n   */\r\n  setLayer(obj) {\r\n    this.id = obj.fileId;\r\n    this.layer = obj.layer;\r\n    this.ome = obj.ome;\r\n    this.projectId = obj.projectId;\r\n    this.roiLayers = obj.roiLayers;\r\n    this.structures = obj.structures;\r\n    this.selectedLayer = obj.selectedLayer;\r\n    this.updateProject = obj.updateProject;\r\n\r\n    if (obj.structures[obj.selectedLayer]) {\r\n      this.toolLayerConfig = obj.structures[obj.selectedLayer].tools.find(\r\n        (c) => c.name === \"ai_Training\"\r\n      );\r\n    }\r\n\r\n    if (typeof this.toolLayerConfig !== \"undefined\") {\r\n      Object.assign(this.state, this.toolLayerConfig.parameters);\r\n    }\r\n  }\r\n\r\n  mouse() {}\r\n\r\n  /**\r\n   * AITraining for the entire project\r\n   * @param {Component} component\r\n   */\r\n  calcFull(component) {\r\n    // reset previous training stats\r\n    this.state.trainingFinished = false;\r\n    this.state.trainingFailed = false;\r\n    this.state.showTrainingProgress = false;\r\n\r\n    this.state.stepsProgress = \"-\";\r\n    this.state.epochsProgress = \"-\";\r\n    this.state.lossProgress = \"-\";\r\n    this.state.meanIoUProgress = \"-\";\r\n    this.state.vallossProgress = \"-\";\r\n    this.state.valmeanIoUProgress = \"-\";\r\n\r\n    if (this.state.epochs === \"\" || this.state.epochs.length < 1) {\r\n      this.state.errorEpochs = true;\r\n    } else if (this.state.errorEpochs !== \"undefined\")\r\n      this.state.errorEpochs = false;\r\n    this.configForm.setState(this.state);\r\n    if (this.state.errorEpochs || this.state.errorAIName) return;\r\n    component.props.spinloader.show();\r\n    const project = this.viewer.createProjectModel(\"none\");\r\n\r\n    let data = {\r\n      parameters: this.state,\r\n      project: project,\r\n    };\r\n    const projectModel = this.viewer.createProjectModel(\"all\");\r\n    Backend.saveProject(projectModel, () => {});\r\n\r\n    setTimeout(() => {\r\n      Backend.aiTrainingSignalR(\r\n        data,\r\n        (progress) => {\r\n          console.log(progress);\r\n        },\r\n        () => {\r\n          console.log(\"finished!\");\r\n          component.props.spinloader.hide();\r\n        },\r\n        (error) => {\r\n          component.props.spinloader.hide();\r\n          window.openErrorDialog(error);\r\n        }\r\n      );\r\n    }, 1000);\r\n  }\r\n\r\n  /**\r\n   * Draw a custom cursor\r\n   */\r\n  drawCustomCursor() {}\r\n\r\n  onParameterChange = (e) => {\r\n    Object.assign(this.state, e);\r\n  };\r\n\r\n  setSelectedExistingModel = (value) => {\r\n    this.state.selectedExistingModel = value;\r\n  };\r\n\r\n  exit() {}\r\n\r\n  /**\r\n   * Renders the Tool Configuration Inputs\r\n   */\r\n  renderConfiguration() {\r\n    return (\r\n      <div>\r\n        <Typography variant=\"h6\">{this.name}:</Typography>\r\n        <ConfigForm\r\n          ome={this.ome}\r\n          toolConfig={this.toolConfig}\r\n          state={this.state}\r\n          onParameterChange={this.onParameterChange}\r\n          setSelectedExistingModel={this.setSelectedExistingModel}\r\n          structures={this.structures}\r\n          selectedLayer={this.selectedLayer}\r\n          onApply={(component) => {\r\n            return this.state.preview\r\n              ? this.calcPreview(component)\r\n              : this.calcFull(component);\r\n          }}\r\n          onApplyAll={(component) => {\r\n            return this.calcFull(component, true);\r\n          }}\r\n          componentRef={(c) => (this.configForm = c)}\r\n        />\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\n/**\r\n * Configuration Component to render the parameter inputs dynamically\r\n */\r\nclass ConfigFormRaw extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n    if (props.componentRef) props.componentRef(this);\r\n    this.state = props.state;\r\n  }\r\n\r\n  /**\r\n   * Update tool state\r\n   */\r\n  onParameterChange(key, value, e) {\r\n    let stateObject = {};\r\n    stateObject[key] = value;\r\n    setTimeout(() => this.props.onParameterChange(stateObject), 10);\r\n    if (value !== \"\" && e.target.name === \"epochs\") {\r\n      stateObject[\"errorEpochs\"] = false;\r\n    }\r\n    this.setState(stateObject);\r\n    this.forceUpdate();\r\n  }\r\n\r\n  handleClickOpen = () => {\r\n    this.setState({ openTrainExistingDialog: true });\r\n  };\r\n\r\n  render() {\r\n    let { onApply, selectedLayer } = this.props;\r\n    return (\r\n      <div>\r\n        {this.props.structures[selectedLayer].label}\r\n        {!this.state.hideStartTraining && (\r\n          <div>\r\n            <FormControl component=\"fieldset\" fullWidth>\r\n              <TextField\r\n                name=\"epochs\"\r\n                margin=\"normal\"\r\n                required={true}\r\n                type=\"number\"\r\n                size=\"small\"\r\n                error={this.state.errorEpochs}\r\n                label=\"Epochs\"\r\n                placeholder=\"Enter number of epochs...\"\r\n                value={this.state.epochs}\r\n                onChange={(e) =>\r\n                  this.onParameterChange(\"epochs\", e.target.value, e)\r\n                }\r\n                variant=\"outlined\"\r\n                helperText={\r\n                  this.state.errorEpochs ? \"Enter number of epochs.\" : \" \"\r\n                }\r\n                InputProps={{ inputProps: { min: 2, max: 10000 } }}\r\n              />\r\n            </FormControl>\r\n            <AIModelDialog\r\n              dialog=\"AISelectExistingModel\"\r\n              setSelectedExistingModel={(value) => {\r\n                this.props.setSelectedExistingModel(value);\r\n              }}\r\n              existingAIModels={this.state.existingAIModels}\r\n            />\r\n            <Button\r\n              style={{ marginTop: \"5px\" }}\r\n              fullWidth\r\n              variant=\"contained\"\r\n              color=\"primary\"\r\n              onClick={() => onApply(this)}\r\n              startIcon={<PlayArrowRoundedIcon />}\r\n            >\r\n              Start Training\r\n            </Button>\r\n          </div>\r\n        )}\r\n\r\n        {this.state.showDownloadProgress && (\r\n          <div>\r\n            <TextField\r\n              style={{ marginTop: \"10px\", textAlign: \"center\", width: \"100%\" }}\r\n              name=\"Textfield\"\r\n              label=\"Downloading weights from existing model:\"\r\n              fullWidth\r\n              value={this.state.modelDownloadProgress + \"%\"}\r\n              InputProps={{\r\n                readOnly: true,\r\n                disableUnderline: true,\r\n              }}\r\n            />\r\n            <LinearProgress\r\n              variant=\"determinate\"\r\n              value={this.state.modelDownloadProgress}\r\n            />\r\n          </div>\r\n        )}\r\n\r\n        {this.state.buildingModel && (\r\n          <div>\r\n            <TextField\r\n              style={{ marginTop: \"10px\", textAlign: \"center\", width: \"100%\" }}\r\n              name=\"Textfield\"\r\n              label=\"Initialization\"\r\n              fullWidth\r\n              value={this.state.buildingModelText}\r\n              InputProps={{\r\n                readOnly: true,\r\n                disableUnderline: true,\r\n              }}\r\n            />\r\n            <LinearProgress />\r\n          </div>\r\n        )}\r\n\r\n        {this.state.showTrainingProgress && (\r\n          <div>\r\n            <div>\r\n              <TextField\r\n                style={{ margin: \"5px\", marginTop: \"10px\" }}\r\n                name=\"Textfield\"\r\n                label=\"Epochs:\"\r\n                value={this.state.epochsProgress}\r\n                InputProps={{\r\n                  readOnly: true,\r\n                  disableUnderline: true,\r\n                }}\r\n              />\r\n              <TextField\r\n                style={{ margin: \"5px\", marginTop: \"10px\" }}\r\n                name=\"Textfield\"\r\n                label=\"Steps:\"\r\n                value={this.state.stepsProgress}\r\n                InputProps={{\r\n                  readOnly: true,\r\n                  disableUnderline: true,\r\n                }}\r\n              />\r\n              <TextField\r\n                style={{ margin: \"5px\" }}\r\n                name=\"Textfield\"\r\n                label=\"Training Loss:\"\r\n                value={this.state.lossProgress}\r\n                InputProps={{\r\n                  readOnly: true,\r\n                  disableUnderline: true,\r\n                }}\r\n              />\r\n              <TextField\r\n                style={{ margin: \"5px\" }}\r\n                name=\"Textfield\"\r\n                label=\"Training Mean IoU:\"\r\n                value={this.state.meanIoUProgress}\r\n                InputProps={{\r\n                  readOnly: true,\r\n                  disableUnderline: true,\r\n                }}\r\n              />\r\n              <TextField\r\n                style={{ margin: \"5px\" }}\r\n                name=\"Textfield\"\r\n                label=\"Validation Loss:\"\r\n                value={this.state.vallossProgress}\r\n                InputProps={{\r\n                  readOnly: true,\r\n                  disableUnderline: true,\r\n                }}\r\n              />\r\n              <TextField\r\n                style={{ margin: \"5px\" }}\r\n                name=\"Textfield\"\r\n                label=\"Validation Mean IoU:\"\r\n                value={this.state.valmeanIoUProgress}\r\n                InputProps={{\r\n                  readOnly: true,\r\n                  disableUnderline: true,\r\n                }}\r\n              />\r\n            </div>\r\n\r\n            {this.state.showOptimizationProgress && (\r\n              <div>\r\n                <TextField\r\n                  style={{\r\n                    marginTop: \"10px\",\r\n                    textAlign: \"center\",\r\n                    width: \"100%\",\r\n                  }}\r\n                  name=\"Textfield\"\r\n                  label=\"Optimize Deep Learning Model:\"\r\n                  fullWidth\r\n                  value={this.state.modelOptimizeProgress + \"%\"}\r\n                  InputProps={{\r\n                    readOnly: true,\r\n                    disableUnderline: true,\r\n                  }}\r\n                />\r\n                <LinearProgress\r\n                  variant=\"determinate\"\r\n                  value={this.state.modelOptimizeProgress}\r\n                />\r\n              </div>\r\n            )}\r\n\r\n            {this.state.trainingFinished && (\r\n              <div>\r\n                <h4\r\n                  style={{\r\n                    textAlign: \"center\",\r\n                    marginTop: \"20px\",\r\n                    color: \"green\",\r\n                  }}\r\n                >\r\n                  Successful\r\n                </h4>\r\n                <Button\r\n                  style={{ marginTop: \"5px\" }}\r\n                  fullWidth\r\n                  tooltip=\"Go back to the start page\"\r\n                  variant=\"contained\"\r\n                  color=\"primary\"\r\n                  startIcon={<ReplayRoundedIcon />}\r\n                  onClick={() => {\r\n                    this.setState({\r\n                      buildingModel: false,\r\n                      showTrainingProgress: false,\r\n                      hideStartTraining: false,\r\n                      trainingFinished: false,\r\n                      epochsProgress: \"\",\r\n                      stepsProgress: \"\",\r\n                      meanIoUProgress: \"\",\r\n                      lossProgress: \"\",\r\n                      valmeanIoUProgress: \"\",\r\n                      vallossProgress: \"\",\r\n                    });\r\n                  }}\r\n                >\r\n                  Restart Training\r\n                </Button>\r\n              </div>\r\n            )}\r\n            {this.state.trainingFailed && (\r\n              <div>\r\n                <h4\r\n                  style={{\r\n                    textAlign: \"center\",\r\n                    marginTop: \"20px\",\r\n                    color: \"green\",\r\n                  }}\r\n                >\r\n                  Failed\r\n                </h4>\r\n                <Button\r\n                  style={{ marginTop: \"5px\" }}\r\n                  fullWidth\r\n                  tooltip=\"Go back to the start page\"\r\n                  variant=\"contained\"\r\n                  color=\"primary\"\r\n                  startIcon={<ReplayRoundedIcon />}\r\n                  onClick={() => {\r\n                    this.setState({\r\n                      buildingModel: false,\r\n                      showTrainingProgress: false,\r\n                      hideStartTraining: false,\r\n                      trainingFinished: false,\r\n                      epochsProgress: \"\",\r\n                      stepsProgress: \"\",\r\n                      meanIoUProgress: \"\",\r\n                      lossProgress: \"\",\r\n                      valmeanIoUProgress: \"\",\r\n                      vallossProgress: \"\",\r\n                    });\r\n                  }}\r\n                >\r\n                  Restart Training\r\n                </Button>\r\n              </div>\r\n            )}\r\n          </div>\r\n        )}\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nConfigFormRaw.propTypes = {\r\n  componentRef: PropTypes.object,\r\n  state: PropTypes.object,\r\n  onParameterChange: PropTypes.func,\r\n  onApply: PropTypes.func,\r\n  selectedLayer: PropTypes.number,\r\n  structures: PropTypes.array,\r\n  setSelectedExistingModel: PropTypes.func,\r\n};\r\n\r\nconst ConfigForm = withSpinloader(ConfigFormRaw);\r\n\r\nexport default AITrainingTool;\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport {\r\n  TextField,\r\n  Button,\r\n  List,\r\n  ListItem,\r\n  ListItemAvatar,\r\n  Avatar,\r\n  ListItemSecondaryAction,\r\n  IconButton,\r\n  Typography,\r\n} from \"@mui/material\";\r\n\r\nimport { distance } from \"../../utils/PolygonUtil\";\r\n\r\nimport Crop169Icon from \"@mui/icons-material/Crop169\";\r\nimport CommentIcon from \"@mui/icons-material/Comment\";\r\nimport ArrowForwardOutlinedIcon from \"@mui/icons-material/ArrowForwardOutlined\";\r\nimport FormatSizeIcon from \"@mui/icons-material/FormatSize\";\r\n\r\nimport { faDrawPolygon, faRuler } from \"@fortawesome/free-solid-svg-icons\";\r\nimport { FontAwesomeIcon } from \"@fortawesome/react-fontawesome\";\r\nimport DeleteIcon from \"@mui/icons-material/Delete\";\r\nimport Tooltip from \"@mui/material/Tooltip\";\r\n\r\nimport { CommentROI } from \"../../utils/ROI\";\r\nimport SketchColorPicker from \"../../../common/components/SketchColorPicker\";\r\n\r\nimport Tool from \"./Tool\";\r\n\r\nconst scaleUnitLabels = [\"km\", \"m\", \"mm\", \"µm\", \"nm\", \"pm\", \"fm\", \"am\", \"zm\"];\r\nconst scaleUnits = [3, 1, -3, -6, -9, -12, -15, -18, -21];\r\n\r\nconst styles = {\r\n  buttonStyle: { marginRight: 10, marginBottom: 10, minWidth: 195 },\r\n  listButtonStyle: { marginRight: 5, marginBottom: 5 },\r\n};\r\n\r\nclass CommentTool extends Tool {\r\n  name = \"Comment\";\r\n  noConfig = false;\r\n  mouseActionState = \"free\";\r\n  downScale = 2;\r\n  points = [];\r\n  commentState = {\r\n    commentValue: \"\",\r\n    color: \"#D0021B\",\r\n    selectedTool: \"rectangle\",\r\n  };\r\n  selectedCommentIdx = 0;\r\n  lastP = null;\r\n  gripData = null;\r\n\r\n  setLayer(obj) {\r\n    this.ome = obj.ome;\r\n    this.isBrightfield = obj.ome.channels[0].type === \"brightfield\";\r\n    this.lineColor = this.isBrightfield ? \"#000000\" : \"#ffffff\";\r\n    this.selectionColor = this.lineColor;\r\n    this.layer = obj.layer;\r\n    this.roiLayers = obj.roiLayers;\r\n    this.selectedLayer = obj.selectedLayer;\r\n    this.structures = obj.structures;\r\n    this.drawLayer = obj.drawLayer;\r\n    this.commentLayer = obj.commentLayer\r\n      ? obj.commentLayer\r\n      : { commentRois: [] };\r\n  }\r\n\r\n  setPreviewRect() {}\r\n\r\n  distance(p1, p2) {\r\n    let deltaX = p1.x - p2.x;\r\n    let deltaY = p1.y - p2.y;\r\n    return Math.sqrt(deltaX * deltaX + deltaY * deltaY);\r\n  }\r\n\r\n  generateDistancePoints = (p1, p2) => {\r\n    let vector = {\r\n      x: p1.x - p2.x,\r\n      y: p1.y - p2.y,\r\n    };\r\n    let length = Math.sqrt(vector.x * vector.x + vector.y * vector.y);\r\n    let dl = length / 20;\r\n    vector.x /= length;\r\n    vector.y /= length;\r\n    return [\r\n      [p1.x, p1.y],\r\n      [p2.x, p2.y],\r\n      [p2.x - (dl * vector.y) / 2, p2.y + (dl * vector.x) / 2],\r\n      [p2.x + (dl * vector.y) / 2, p2.y - (dl * vector.x) / 2],\r\n      [p2.x, p2.y],\r\n      [p1.x, p1.y],\r\n      [p1.x - (dl * vector.y) / 2, p1.y + (dl * vector.x) / 2],\r\n      [p1.x + (dl * vector.y) / 2, p1.y - (dl * vector.x) / 2],\r\n    ];\r\n  };\r\n\r\n  generateArrowPoints = (p1, p2) => {\r\n    let vector = {\r\n      x: p1.x - p2.x,\r\n      y: p1.y - p2.y,\r\n    };\r\n    let length = Math.sqrt(vector.x * vector.x + vector.y * vector.y);\r\n    let dl = length / 20;\r\n    vector.x /= length;\r\n    vector.y /= length;\r\n    return [\r\n      [p1.x, p1.y],\r\n      [p2.x + vector.x * dl, p2.y + vector.y * dl],\r\n      [\r\n        p2.x + vector.x * dl - (dl * vector.y) / 2,\r\n        p2.y + vector.y * dl + (dl * vector.x) / 2,\r\n      ],\r\n      [p2.x, p2.y],\r\n      [\r\n        p2.x + vector.x * dl + (dl * vector.y) / 2,\r\n        p2.y + vector.y * dl - (dl * vector.x) / 2,\r\n      ],\r\n      [p2.x + vector.x * dl, p2.y + vector.y * dl],\r\n    ];\r\n  };\r\n\r\n  deleteCommentRoi(idx) {\r\n    this.commentLayer.commentRois.splice(idx, 1);\r\n    window.forceSidebarUpdate();\r\n  }\r\n\r\n  changeRoiFontSize(idx) {\r\n    if (this.commentLayer.commentRois[idx].fontScaleFactor === 2 / 3) {\r\n      this.commentLayer.commentRois[idx].fontScaleFactor = 1;\r\n    } else if (this.commentLayer.commentRois[idx].fontScaleFactor === 1) {\r\n      this.commentLayer.commentRois[idx].fontScaleFactor = 4 / 3;\r\n    } else {\r\n      this.commentLayer.commentRois[idx].fontScaleFactor = 2 / 3;\r\n    }\r\n  }\r\n\r\n  changeSelectedColor(idx, color) {\r\n    this.commentLayer.commentRois[idx].color = color;\r\n    window.forceSidebarUpdate();\r\n  }\r\n\r\n  changeSelectedCommentValue(idx, commentValue) {\r\n    this.commentLayer.commentRois[idx].commentValue = commentValue;\r\n    window.forceSidebarUpdate();\r\n  }\r\n\r\n  changeSelectedCommentIdx(idx) {\r\n    // provides bad user-experience when using for documentation purposes\r\n    // window.zoomToRect(this.commentLayer.commentRois[idx].bounds);\r\n    this.selectedCommentIdx = idx;\r\n    window.forceSidebarUpdate();\r\n  }\r\n\r\n  computePolygonArea(points) {\r\n    let X = [];\r\n    let Y = [];\r\n    let numPoints = points.length;\r\n    for (let p of points) {\r\n      X.push(p[0]);\r\n      Y.push(p[1]);\r\n    }\r\n    let area = 0; // Accumulates area\r\n    let j = numPoints - 1;\r\n\r\n    for (let i = 0; i < numPoints; i++) {\r\n      area += (X[j] + X[i]) * (Y[j] - Y[i]);\r\n      j = i; //j is previous vertex to i\r\n    }\r\n    return area / 2;\r\n  }\r\n\r\n  computLengthValue(physicalLength, area) {\r\n    physicalLength = Math.abs(physicalLength);\r\n    let computedValue = 0;\r\n    // display pixel if no unit is set\r\n    if (!this.ome.physicalSizeX) {\r\n      return Math.round(physicalLength) + \" px\";\r\n    }\r\n    let unitLength = physicalLength;\r\n\r\n    // find best fitting exponennt\r\n    let unitExponent = 1;\r\n    let unitExponentIndex = 1;\r\n    for (\r\n      unitExponentIndex = 0;\r\n      unitExponentIndex < scaleUnits.length;\r\n      unitExponentIndex++\r\n    ) {\r\n      unitExponent = area\r\n        ? scaleUnits[unitExponentIndex] * 2\r\n        : scaleUnits[unitExponentIndex];\r\n      unitLength = physicalLength / Math.pow(10, unitExponent);\r\n      if (unitLength > 1) {\r\n        break;\r\n      }\r\n    }\r\n    if (area) {\r\n      computedValue =\r\n        Math.round(unitLength * 100) / 100 +\r\n        \" \" +\r\n        scaleUnitLabels[unitExponentIndex] +\r\n        \"²\";\r\n    } else {\r\n      computedValue =\r\n        Math.round(unitLength * 100) / 100 +\r\n        \" \" +\r\n        scaleUnitLabels[unitExponentIndex];\r\n    }\r\n    return computedValue;\r\n  }\r\n\r\n  pointInsideBounds(p, bounds) {\r\n    return !(\r\n      p.x < bounds.left ||\r\n      p.x > bounds.right ||\r\n      p.y < bounds.top ||\r\n      p.y > bounds.bottom\r\n    );\r\n  }\r\n\r\n  addPoint = (event, p) => {\r\n    let eventPoint = { x: event.clientX, y: event.clientY };\r\n    if (this.points.length < 3) {\r\n      this.points.push([p.x, p.y]);\r\n      this.lastEventPoint = eventPoint;\r\n    } else {\r\n      const dist = distance(this.lastEventPoint, eventPoint);\r\n      if (dist < 10) {\r\n        this.points[this.points.length - 1] = [p.x, p.y];\r\n      } else {\r\n        this.points.push([p.x, p.y]);\r\n        this.lastEventPoint = eventPoint;\r\n      }\r\n    }\r\n  };\r\n\r\n  mouse(params) {\r\n    let { event, p } = params;\r\n    let mouseP = p;\r\n    if (\r\n      this.mouseActionState !== \"draw\" &&\r\n      this.commentLayer[\"commentRois\"].length > 0 &&\r\n      this.commentLayer[\"commentRois\"][this.selectedCommentIdx]\r\n    ) {\r\n      let selectedCommentRoi =\r\n        this.commentLayer[\"commentRois\"][this.selectedCommentIdx];\r\n      if (this.mouseActionState === \"free\") {\r\n        let minArea = Number.MAX_SAFE_INTEGER;\r\n        for (let i = 0; i < this.commentLayer.commentRois.length; i++) {\r\n          if (this.commentLayer.commentRois[i].containsPoint(mouseP)) {\r\n            let commentRoiArea =\r\n              this.commentLayer.commentRois[i].width *\r\n              this.commentLayer.commentRois[i].height;\r\n            if (commentRoiArea < minArea) {\r\n              this.selectedCommentIdx = i;\r\n              minArea = commentRoiArea;\r\n            }\r\n          }\r\n        }\r\n      } else {\r\n        if (event.type === \"mouseup\" || event.type === \"mouseleave\") {\r\n          this.mouseActionState = \"free\";\r\n        } else if (event.type === \"mousemove\") {\r\n          if (this.mouseActionState === \"move\") {\r\n            let deltaX = mouseP.x - this.lastP.x;\r\n            let deltaY = mouseP.y - this.lastP.y;\r\n            let selectedCommentRoi =\r\n              this.commentLayer[\"commentRois\"][this.selectedCommentIdx];\r\n            let regions = [];\r\n            for (let region of selectedCommentRoi.regions) {\r\n              regions.push([region[0] + deltaX, region[1] + deltaY]);\r\n            }\r\n            this.commentLayer[\"commentRois\"][this.selectedCommentIdx].regions =\r\n              regions;\r\n            this.commentLayer[\"commentRois\"][\r\n              this.selectedCommentIdx\r\n            ].updateBounds();\r\n            this.lastP = mouseP;\r\n          } else if (this.mouseActionState === \"resize\") {\r\n            let deltaX = mouseP.x - this.lastP.x;\r\n            let deltaY = mouseP.y - this.lastP.y;\r\n            if (\r\n              selectedCommentRoi.type === \"rectangle\" ||\r\n              selectedCommentRoi.type === \"region\" ||\r\n              selectedCommentRoi.type === \"commentBox\"\r\n            ) {\r\n              let deltaXProc =\r\n                (selectedCommentRoi.width + deltaX) / selectedCommentRoi.width;\r\n              let deltaYProc =\r\n                (selectedCommentRoi.height + deltaY) /\r\n                selectedCommentRoi.height;\r\n              let regions = [];\r\n              for (let region of selectedCommentRoi.regions) {\r\n                let x = selectedCommentRoi.bounds.left;\r\n                let y = selectedCommentRoi.bounds.top;\r\n                let w = region[0] - x;\r\n                let h = region[1] - y;\r\n                regions.push([x + w * deltaXProc, y + h * deltaYProc]);\r\n              }\r\n              this.commentLayer[\"commentRois\"][\r\n                this.selectedCommentIdx\r\n              ].regions = regions;\r\n              this.commentLayer[\"commentRois\"][\r\n                this.selectedCommentIdx\r\n              ].updateBounds();\r\n              let length = this.computePolygonArea(selectedCommentRoi.regions);\r\n              let unitLength =\r\n                length * this.ome.physicalSizeX * this.ome.physicalSizeY;\r\n              if (!this.ome.physicalSizeX) {\r\n                unitLength = length;\r\n              }\r\n              let computedValue = this.computLengthValue(unitLength, true);\r\n              this.commentLayer[\"commentRois\"][\r\n                this.selectedCommentIdx\r\n              ].computedValue = computedValue;\r\n              if (\r\n                this.commentLayer[\"commentRois\"][\r\n                  this.selectedCommentIdx\r\n                ].commentValue.endsWith(\"m²\")\r\n              ) {\r\n                this.commentLayer[\"commentRois\"][\r\n                  this.selectedCommentIdx\r\n                ].commentValue = computedValue;\r\n              }\r\n            } else if (\r\n              selectedCommentRoi.type === \"distance\" ||\r\n              selectedCommentRoi.type === \"arrow\"\r\n            ) {\r\n              let regions = selectedCommentRoi.regions;\r\n              let p1 = {\r\n                x: regions[0][0],\r\n                y: regions[0][1],\r\n              };\r\n              let p2 = {\r\n                x: regions[1][0],\r\n                y: regions[1][1],\r\n              };\r\n\r\n              if (selectedCommentRoi.type === \"arrow\") {\r\n                p2.x = regions[3][0];\r\n                p2.y = regions[3][1];\r\n              }\r\n\r\n              //to do: smaller distance p1, p1 to mouseP, then new distance roi\r\n              if (this.distance(mouseP, p1) < this.distance(mouseP, p2)) {\r\n                p1.x += deltaX;\r\n                p1.y += deltaY;\r\n              } else {\r\n                p2.x += deltaX;\r\n                p2.y += deltaY;\r\n              }\r\n              if (selectedCommentRoi.type === \"arrow\") {\r\n                regions = this.generateArrowPoints(p1, p2);\r\n              } else {\r\n                regions = this.generateDistancePoints(p1, p2);\r\n              }\r\n\r\n              let length = this.distance(p1, p2);\r\n              let computedValue = this.computLengthValue(\r\n                this.ome.physicalSizeX * length,\r\n                false\r\n              );\r\n              if (!this.ome.physicalSizeX) {\r\n                computedValue = this.computLengthValue(length, false);\r\n              }\r\n              let commentValue = selectedCommentRoi.commentValue;\r\n              if (commentValue.endsWith(\"m\")) {\r\n                commentValue = computedValue;\r\n              }\r\n              this.commentLayer[\"commentRois\"][this.selectedCommentIdx] =\r\n                new CommentROI(\r\n                  regions,\r\n                  selectedCommentRoi.color,\r\n                  selectedCommentRoi.type,\r\n                  commentValue,\r\n                  computedValue\r\n                );\r\n            }\r\n\r\n            this.lastP = mouseP;\r\n          }\r\n        }\r\n      }\r\n      if (event.type === \"mousedown\" && event.button === 0) {\r\n        if (\r\n          this.gripData !== null &&\r\n          this.pointInsideBounds(mouseP, this.gripData.b)\r\n        ) {\r\n          this.mouseActionState = \"resize\";\r\n        } else if (selectedCommentRoi.containsPoint(mouseP)) {\r\n          this.mouseActionState = \"move\";\r\n        } else {\r\n          this.mouseActionState = \"draw\";\r\n        }\r\n        this.lastP = mouseP;\r\n      }\r\n    }\r\n    let computedValue = \"\";\r\n    let commentValue = this.commentState.commentValue;\r\n    if (event.button !== 0) return;\r\n    if (event.type === \"mousedown\") {\r\n      if (\r\n        this.commentLayer[\"commentRois\"].length > 0 &&\r\n        this.commentLayer[\"commentRois\"][this.selectedCommentIdx]\r\n      ) {\r\n        let selectedCommentRoi =\r\n          this.commentLayer[\"commentRois\"][this.selectedCommentIdx];\r\n        if (\r\n          this.gripData !== null &&\r\n          this.pointInsideBounds(mouseP, this.gripData.b)\r\n        ) {\r\n          this.mouseActionState = \"resize\";\r\n          this.lastP = mouseP;\r\n          return;\r\n        } else if (selectedCommentRoi.containsPoint(mouseP)) {\r\n          this.mouseActionState = \"move\";\r\n          this.lastP = mouseP;\r\n          return;\r\n        }\r\n      } else {\r\n        this.mouseActionState = \"draw\";\r\n      }\r\n      // update position history\r\n      this.startPoint = mouseP;\r\n      this.points = [];\r\n      this.addPoint(event, mouseP);\r\n      if (this.commentLayer.commentRois) {\r\n        this.commentLayer.commentRois.push(\r\n          new CommentROI(\r\n            this.points,\r\n            this.commentState.color,\r\n            this.commentState.selectedTool,\r\n            this.commentState.commentValue,\r\n            computedValue\r\n          )\r\n        );\r\n        this.selectedCommentIdx = this.commentLayer[\"commentRois\"].length - 1;\r\n        window.forceSidebarUpdate();\r\n      } else {\r\n        this.commentLayer[\"commentRois\"] = [\r\n          new CommentROI(\r\n            this.points,\r\n            this.commentState.color,\r\n            this.commentState.selectedTool,\r\n            this.commentState.commentValue,\r\n            computedValue\r\n          ),\r\n        ];\r\n      }\r\n\r\n      // set drawing flag\r\n      this.mouseActionState = \"draw\";\r\n    } else if (event.type === \"mouseup\") {\r\n      let lastRoi =\r\n        this.commentLayer.commentRois[this.commentLayer.commentRois.length - 1];\r\n      if (!lastRoi) {\r\n        console.log(\"LAST ROI WAS EMPTY\");\r\n      } else if (\r\n        lastRoi.regions.length < 4 ||\r\n        lastRoi.width === 0 ||\r\n        lastRoi.height === 0\r\n      ) {\r\n        console.log(\"last roi :\", lastRoi);\r\n        window.showWarningSnackbar(\"Comment could not be created!\");\r\n        this.commentLayer.commentRois.pop();\r\n        window.forceSidebarUpdate();\r\n      }\r\n      // release drawing flag\r\n      this.mouseActionState = \"free\";\r\n    } else if (event.type === \"mousemove\") {\r\n      if (this.mouseActionState === \"draw\") {\r\n        if (\r\n          this.commentState.selectedTool === \"rectangle\" ||\r\n          this.commentState.selectedTool === \"commentBox\"\r\n        ) {\r\n          this.points = [\r\n            [this.startPoint.x, this.startPoint.y],\r\n            [mouseP.x, this.startPoint.y],\r\n            [mouseP.x, mouseP.y],\r\n            [this.startPoint.x, mouseP.y],\r\n          ];\r\n          let width =\r\n            Math.abs(this.startPoint.x - mouseP.x) * this.ome.physicalSizeX;\r\n          let height =\r\n            Math.abs(this.startPoint.y - mouseP.y) * this.ome.physicalSizeY;\r\n          if (!this.ome.physicalSizeX) {\r\n            width = Math.abs(this.startPoint.x - mouseP.x);\r\n            height = Math.abs(this.startPoint.y - mouseP.y);\r\n          }\r\n          let unitLength = width * height;\r\n          computedValue = this.computLengthValue(unitLength, true);\r\n          if (\r\n            this.commentState.commentValue === \"\" &&\r\n            this.commentState.selectedTool !== \"commentBox\"\r\n          )\r\n            commentValue = computedValue;\r\n        } else if (this.commentState.selectedTool === \"region\") {\r\n          this.addPoint(event, mouseP);\r\n          let length = this.computePolygonArea(this.points);\r\n          let unitLength =\r\n            length * this.ome.physicalSizeX * this.ome.physicalSizeY;\r\n          if (!this.ome.physicalSizeX) {\r\n            unitLength = length;\r\n          }\r\n          computedValue = this.computLengthValue(unitLength, true);\r\n          if (\r\n            this.commentState.commentValue === \"\" &&\r\n            this.commentState.selectedTool !== \"commentBox\"\r\n          )\r\n            commentValue = computedValue;\r\n        } else if (this.commentState.selectedTool === \"arrow\") {\r\n          let vector = {\r\n            x: this.startPoint.x - mouseP.x,\r\n            y: this.startPoint.y - mouseP.y,\r\n          };\r\n          let length = Math.sqrt(vector.x * vector.x + vector.y * vector.y);\r\n          this.points = this.generateArrowPoints(this.startPoint, mouseP);\r\n\r\n          if (!this.ome.physicalSizeX) {\r\n            computedValue = this.computLengthValue(length, false);\r\n          } else {\r\n            computedValue = this.computLengthValue(\r\n              this.ome.physicalSizeX * length,\r\n              false\r\n            );\r\n          }\r\n        } else if (this.commentState.selectedTool === \"distance\") {\r\n          let vector = {\r\n            x: this.startPoint.x - mouseP.x,\r\n            y: this.startPoint.y - mouseP.y,\r\n          };\r\n          let length = Math.sqrt(vector.x * vector.x + vector.y * vector.y);\r\n          this.points = this.generateDistancePoints(this.startPoint, mouseP);\r\n\r\n          if (!this.ome.physicalSizeX) {\r\n            computedValue = this.computLengthValue(length, false);\r\n          } else {\r\n            computedValue = this.computLengthValue(\r\n              this.ome.physicalSizeX * length,\r\n              false\r\n            );\r\n          }\r\n          if (\r\n            this.commentState.commentValue === \"\" &&\r\n            this.commentState.selectedTool !== \"commentBox\"\r\n          )\r\n            commentValue = computedValue;\r\n        } else {\r\n          return;\r\n        }\r\n\r\n        this.commentLayer[\"commentRois\"][\r\n          this.commentLayer[\"commentRois\"].length - 1\r\n        ] = new CommentROI(\r\n          this.points,\r\n          this.commentState.color,\r\n          this.commentState.selectedTool,\r\n          commentValue,\r\n          computedValue\r\n        );\r\n        window.forceSidebarUpdate();\r\n      }\r\n    }\r\n  }\r\n\r\n  drawCustomCursor(ctx, mousePosition, fct, canvas) {\r\n    if (\r\n      this.mouseActionState === \"free\" &&\r\n      this.commentLayer[\"commentRois\"].length > 0 &&\r\n      this.commentLayer[\"commentRois\"][this.selectedCommentIdx]\r\n    ) {\r\n      ctx.beginPath();\r\n      ctx.globalAlpha = 1.0;\r\n      let selectedCommentRoi =\r\n        this.commentLayer[\"commentRois\"][this.selectedCommentIdx];\r\n\r\n      let pointInsideSelection =\r\n        selectedCommentRoi.containsPoint(mousePosition);\r\n\r\n      ctx.strokeStyle = pointInsideSelection ? \"red\" : this.selectionColor;\r\n      let b = selectedCommentRoi.bounds;\r\n      // no custom cursor\r\n      ctx.rect(b.left, b.top, b.right - b.left, b.bottom - b.top);\r\n      ctx.stroke();\r\n      ctx.closePath();\r\n\r\n      let cursor = pointInsideSelection ? \"move\" : \"default\";\r\n      let gripPoints = [];\r\n      if (\r\n        selectedCommentRoi.type === \"rectangle\" ||\r\n        selectedCommentRoi.type === \"region\" ||\r\n        selectedCommentRoi.type === \"commentBox\"\r\n      ) {\r\n        gripPoints = [\r\n          {\r\n            x: b.right,\r\n            y: b.bottom,\r\n          },\r\n        ];\r\n      } else if (selectedCommentRoi.type === \"distance\") {\r\n        gripPoints = [\r\n          {\r\n            x: selectedCommentRoi.regions[0][0],\r\n            y: selectedCommentRoi.regions[0][1],\r\n          },\r\n          {\r\n            x: selectedCommentRoi.regions[1][0],\r\n            y: selectedCommentRoi.regions[1][1],\r\n          },\r\n        ];\r\n      } else if (selectedCommentRoi.type === \"arrow\") {\r\n        gripPoints = [\r\n          {\r\n            x: selectedCommentRoi.regions[0][0],\r\n            y: selectedCommentRoi.regions[0][1],\r\n          },\r\n          {\r\n            x: selectedCommentRoi.regions[3][0],\r\n            y: selectedCommentRoi.regions[3][1],\r\n          },\r\n        ];\r\n      }\r\n      for (let gripPoint of gripPoints) {\r\n        let gripSize = 14 / fct;\r\n        let gripSizeInner = 10 / fct;\r\n        this.gripData = {\r\n          p: {\r\n            x: gripPoint.x,\r\n            y: gripPoint.y,\r\n          },\r\n          b: {\r\n            left: gripPoint.x - gripSize / 2,\r\n            right: gripPoint.x + gripSize / 2,\r\n            top: gripPoint.y - gripSize / 2,\r\n            bottom: gripPoint.y + gripSize / 2,\r\n          },\r\n          bInner: {\r\n            left: gripPoint.x - gripSizeInner / 2,\r\n            right: gripPoint.x + gripSizeInner / 2,\r\n            top: gripPoint.y - gripSizeInner / 2,\r\n            bottom: gripPoint.y + gripSizeInner / 2,\r\n          },\r\n        };\r\n\r\n        ctx.fillStyle = \"black\";\r\n        ctx.fillRect(\r\n          this.gripData.b.left,\r\n          this.gripData.b.top,\r\n          gripSize,\r\n          gripSize\r\n        );\r\n        ctx.fillStyle = \"white\";\r\n        ctx.fillRect(\r\n          this.gripData.bInner.left,\r\n          this.gripData.bInner.top,\r\n          gripSizeInner,\r\n          gripSizeInner\r\n        );\r\n\r\n        if (this.pointInsideBounds(mousePosition, this.gripData.b)) {\r\n          if (\r\n            selectedCommentRoi.type === \"arrow\" ||\r\n            selectedCommentRoi.type === \"distance\"\r\n          ) {\r\n            cursor = \"pointer\";\r\n          } else {\r\n            cursor = \"nw-resize\";\r\n          }\r\n          break;\r\n        }\r\n      }\r\n\r\n      canvas.style.cursor = cursor;\r\n    }\r\n  }\r\n\r\n  updateCommentRoi = () => {\r\n    let computedValue = 0;\r\n    if (this.commentLayer[\"commentRois\"].length > 0) {\r\n      this.commentLayer[\"commentRois\"][this.selectedCommentIdx] =\r\n        new CommentROI(\r\n          this.commentLayer[\"commentRois\"][this.selectedCommentIdx].regions,\r\n          this.commentState.color,\r\n          this.commentState.selectedTool,\r\n          this.commentState.commentValue,\r\n          computedValue\r\n        );\r\n    }\r\n  };\r\n\r\n  exit() {}\r\n\r\n  renderConfiguration = () => {\r\n    return (\r\n      <div>\r\n        <Typography variant=\"h6\">{this.name}:</Typography>\r\n        <ConfigForm\r\n          selectedCommentIdx={this.selectedCommentIdx}\r\n          changeSelectedCommentIdx={(idx) => {\r\n            this.changeSelectedCommentIdx(idx);\r\n          }}\r\n          commentRois={this.commentLayer[\"commentRois\"]}\r\n          commentState={this.commentState}\r\n          changeCommentState={(commentState) => {\r\n            this.commentState = commentState;\r\n            window.forceSidebarUpdate();\r\n          }}\r\n          updateCommentRoi={() => {\r\n            this.updateCommentRoi(this.commentState);\r\n          }}\r\n          deleteCommentRoi={(idx) => {\r\n            this.deleteCommentRoi(idx);\r\n          }}\r\n          changeSelectedColor={(idx, color) => {\r\n            this.changeSelectedColor(idx, color);\r\n          }}\r\n          changeSelectedCommentValue={(idx, commentValue) => {\r\n            this.changeSelectedCommentValue(idx, commentValue);\r\n          }}\r\n          changeRoiFontSize={(idx) => {\r\n            this.changeRoiFontSize(idx);\r\n          }}\r\n        />\r\n      </div>\r\n    );\r\n  };\r\n}\r\n\r\nclass ConfigForm extends Component {\r\n  changeCommentType = (type) => {\r\n    let commentState = this.props.commentState;\r\n    commentState[\"selectedTool\"] = type;\r\n    commentState[\"commentValue\"] = \"\";\r\n    this.props.changeCommentState(commentState);\r\n  };\r\n  render() {\r\n    const { commentValue, color, selectedTool } = this.props.commentState;\r\n    return (\r\n      <div style={{ height: \"calc(100% - 32px)\", overflowY: \"hidden\" }}>\r\n        <div style={{ height: \"190px\" }}>\r\n          <div style={{ display: \"flex\", marginTop: 20 }}>\r\n            <TextField\r\n              style={{ width: \"300px\", marginRight: \"20px\" }}\r\n              name=\"Textfield\"\r\n              value={commentValue}\r\n              size=\"small\"\r\n              label=\"Default value\"\r\n              placeholder=\"Enter default value...\"\r\n              variant=\"outlined\"\r\n              onChange={(e) => {\r\n                let commentState = this.props.commentState;\r\n                commentState[\"commentValue\"] = e.target.value;\r\n                this.props.changeCommentState(commentState);\r\n              }}\r\n            />\r\n            <SketchColorPicker\r\n              color={color}\r\n              handleChange={(color) => {\r\n                let commentState = this.props.commentState;\r\n                commentState[\"color\"] = color;\r\n                this.props.changeCommentState(commentState);\r\n              }}\r\n            />\r\n          </div>\r\n          <br />\r\n          <div>\r\n            <Button\r\n              width=\"150px\"\r\n              style={styles.buttonStyle}\r\n              variant=\"contained\"\r\n              onClick={() => {\r\n                this.changeCommentType(\"rectangle\");\r\n              }}\r\n              color={selectedTool === \"rectangle\" ? \"primary\" : \"default\"}\r\n              startIcon={<Crop169Icon />}\r\n            >\r\n              Rectangle\r\n            </Button>\r\n            <Button\r\n              width=\"150px\"\r\n              style={styles.buttonStyle}\r\n              variant=\"contained\"\r\n              onClick={() => {\r\n                this.changeCommentType(\"arrow\");\r\n              }}\r\n              color={selectedTool === \"arrow\" ? \"primary\" : \"default\"}\r\n              startIcon={<ArrowForwardOutlinedIcon />}\r\n            >\r\n              Arrow\r\n            </Button>\r\n          </div>\r\n          <div>\r\n            <Button\r\n              width=\"150px\"\r\n              style={styles.buttonStyle}\r\n              variant=\"contained\"\r\n              onClick={() => {\r\n                this.changeCommentType(\"region\");\r\n              }}\r\n              color={selectedTool === \"region\" ? \"primary\" : \"default\"}\r\n              startIcon={<FontAwesomeIcon icon={faDrawPolygon} />}\r\n            >\r\n              Region\r\n            </Button>\r\n            <Button\r\n              width=\"150px\"\r\n              style={styles.buttonStyle}\r\n              variant=\"contained\"\r\n              onClick={() => {\r\n                this.changeCommentType(\"distance\");\r\n              }}\r\n              color={selectedTool === \"distance\" ? \"primary\" : \"default\"}\r\n              startIcon={<FontAwesomeIcon icon={faRuler} />}\r\n            >\r\n              Distance\r\n            </Button>\r\n          </div>\r\n          <div>\r\n            <Button\r\n              width=\"150px\"\r\n              style={styles.buttonStyle}\r\n              variant=\"contained\"\r\n              onClick={() => {\r\n                this.changeCommentType(\"commentBox\");\r\n              }}\r\n              color={selectedTool === \"commentBox\" ? \"primary\" : \"default\"}\r\n              startIcon={<CommentIcon />}\r\n            >\r\n              COMMENT\r\n            </Button>\r\n          </div>\r\n        </div>\r\n        <div\r\n          style={{\r\n            height: \"calc(100% - 138px)\",\r\n            overflow: \"auto\",\r\n            maxHeight: \"300px\",\r\n            marginTop: \"10px\",\r\n          }}\r\n        >\r\n          <List component=\"nav\">\r\n            {this.props.commentRois\r\n              .map((commentRoi, i) => {\r\n                return (\r\n                  <ListItem\r\n                    key={i}\r\n                    button\r\n                    selected={this.props.selectedCommentIdx === i}\r\n                    onClick={() => this.props.changeSelectedCommentIdx(i)}\r\n                  >\r\n                    <ListItemAvatar>\r\n                      <Avatar>\r\n                        {commentRoi.type === \"rectangle\" && <Crop169Icon />}\r\n                        {commentRoi.type === \"arrow\" && (\r\n                          <ArrowForwardOutlinedIcon />\r\n                        )}\r\n                        {commentRoi.type === \"region\" && (\r\n                          <FontAwesomeIcon icon={faDrawPolygon} />\r\n                        )}\r\n                        {commentRoi.type === \"distance\" && (\r\n                          <FontAwesomeIcon icon={faRuler} />\r\n                        )}\r\n                        {commentRoi.type === \"commentBox\" && <CommentIcon />}\r\n                      </Avatar>\r\n                    </ListItemAvatar>\r\n                    <TextField\r\n                      label={\r\n                        commentRoi.computedValue\r\n                          ? commentRoi.computedValue.length > 0 &&\r\n                            commentRoi.type !== \"commentBox\"\r\n                            ? \"Comment, Size: \" + commentRoi.computedValue\r\n                            : \"Comment\"\r\n                          : \"Comment\"\r\n                      }\r\n                      name=\"Textfield\"\r\n                      style={{ marginRight: \"36px\" }}\r\n                      fullWidth\r\n                      multiline\r\n                      margin=\"normal\"\r\n                      InputLabelProps={{\r\n                        shrink: true,\r\n                      }}\r\n                      value={commentRoi.commentValue}\r\n                      onChange={(e) => {\r\n                        this.props.changeSelectedCommentValue(\r\n                          i,\r\n                          e.target.value\r\n                        );\r\n                      }}\r\n                    />\r\n                    <div style={{ marginLeft: \"-36px\", marginRight: \"36px\" }}>\r\n                      {commentRoi.type !== \"commentBox\" && (\r\n                        <SketchColorPicker\r\n                          color={commentRoi.color}\r\n                          handleChange={(color) => {\r\n                            this.props.changeSelectedColor(i, color);\r\n                          }}\r\n                        />\r\n                      )}\r\n                    </div>\r\n                    <ListItemSecondaryAction>\r\n                      <Tooltip\r\n                        disableInteractive\r\n                        title=\"Change Comment Font Size\"\r\n                      >\r\n                        <IconButton\r\n                          edge=\"end\"\r\n                          aria-label=\"changeRoiFontSize\"\r\n                          onClick={() => {\r\n                            this.props.changeRoiFontSize(i);\r\n                          }}\r\n                          size=\"large\"\r\n                        >\r\n                          <FormatSizeIcon />\r\n                        </IconButton>\r\n                      </Tooltip>\r\n                      <IconButton\r\n                        edge=\"end\"\r\n                        aria-label=\"delete\"\r\n                        onClick={() => this.props.deleteCommentRoi(i)}\r\n                        size=\"large\"\r\n                      >\r\n                        <DeleteIcon />\r\n                      </IconButton>\r\n                    </ListItemSecondaryAction>\r\n                  </ListItem>\r\n                );\r\n              })\r\n              .reverse()}\r\n          </List>\r\n        </div>\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nConfigForm.propTypes = {\r\n  commentState: PropTypes.object,\r\n  changeCommentState: PropTypes.func,\r\n  commentRois: PropTypes.array,\r\n  selectedCommentIdx: PropTypes.number,\r\n  changeSelectedCommentIdx: PropTypes.func,\r\n  changeSelectedCommentValue: PropTypes.func,\r\n  changeSelectedColor: PropTypes.func,\r\n  changeRoiFontSize: PropTypes.func,\r\n  deleteCommentRoi: PropTypes.func,\r\n};\r\n\r\nexport default CommentTool;\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport {\r\n  FormGroup,\r\n  FormControl,\r\n  FormControlLabel,\r\n  Checkbox,\r\n  Radio,\r\n  RadioGroup,\r\n  Typography,\r\n} from \"@mui/material\";\r\n\r\nimport {\r\n  updateLayer,\r\n  findSameLayer,\r\n  getIntersections,\r\n  findRoi,\r\n  createRegionRoi,\r\n} from \"../../utils/PolygonUtil\";\r\nimport Tool from \"./Tool\";\r\n\r\nclass CopyTool extends Tool {\r\n  name = \"Copy\";\r\n  includeBaseROI = false;\r\n  mode = \"copy\";\r\n\r\n  setLayer(obj) {\r\n    this.layer = obj.layer;\r\n    this.roiLayers = obj.roiLayers;\r\n    this.selectedLayer = obj.selectedLayer;\r\n    let layerResults = findSameLayer(obj.structures, obj.selectedLayer);\r\n    this.selectedSameLayer = layerResults[0];\r\n    this.structures = obj.structures;\r\n  }\r\n\r\n  setPreviewRect() {}\r\n\r\n  /** Handeling of mouse events.\r\n   *\r\n   * @param {MouseEvent} event\r\n   * @param {Object} p x and y of cursor {x:, y: }\r\n   * @param {String} color Color of the currently selected structure (#012DEF)\r\n   * @param {Bool} subtype Is the mouse over a subtype or not?\r\n   * @param {String} name Name of the structure the cursor is above.\r\n   * @param {Bool} positionInRoiLayer (Not used) Is the cursor currently in a ROI Layer?\r\n   * @param {Bool} fullyLoaded (Not used)\r\n   * @param {Int} parentLayer (Not used) The id of the parentlayer of the structure the curson is above.\r\n   */\r\n  mouse(params) {\r\n    let { event, p, color, subtype, name } = params;\r\n    // mouse middle button\r\n    if (event.button === 1) {\r\n      return;\r\n    }\r\n    // right mouse button -> clear\r\n    this.clear = event.button === 2;\r\n\r\n    // Click on something\r\n    if (event.type === \"mouseup\") {\r\n      const historyLength = window.projectHistory.getHistoryLength();\r\n      let historyItem = [];\r\n      let histId = this.structures[this.selectedLayer].id;\r\n\r\n      let drawRegions = []; // Coordinates of the new structures\r\n      let foundRoiResults = findRoi(\r\n        p,\r\n        this.roiLayers,\r\n        this.structures,\r\n        this.includeBaseROI\r\n      );\r\n      let foundRegionIndex = foundRoiResults[0];\r\n      let foundRoi = foundRoiResults[1];\r\n\r\n      // No Results: do nothing.\r\n      if (foundRegionIndex < 0) return;\r\n\r\n      // Same (parent) layer: do nothing.\r\n      if (\r\n        foundRegionIndex === this.selectedLayer &&\r\n        !this.clear &&\r\n        !foundRoi.isSubtype\r\n      ) {\r\n        return;\r\n      }\r\n\r\n      // Singular operations:\r\n      if (\r\n        this.mode === \"copy\" ||\r\n        this.mode === \"convert\" ||\r\n        this.mode === \"overlap\"\r\n      ) {\r\n        // Add found ROI to the new ROIs\r\n        if (foundRoi !== null) drawRegions.push(foundRoi);\r\n      }\r\n\r\n      // Full-layer operations:\r\n      else if (\r\n        this.mode === \"copyAll\" ||\r\n        this.mode === \"convertAll\" ||\r\n        this.mode === \"overlapAll\"\r\n      ) {\r\n        let allRegions = this.roiLayers[\r\n          foundRegionIndex\r\n        ].layer.regionRois.filter(\r\n          (regionroi) => regionroi.subtypeName === foundRoi.subtypeName // Only look at the same subtype\r\n        );\r\n        // Overlap all:\r\n        if (this.mode === \"overlapAll\") {\r\n          let intersection = getIntersections(\r\n            this.layer.regionRois.filter((roi) => !roi.isObject), // Overlapping items cannot be objects\r\n            allRegions\r\n          );\r\n          if (\r\n            intersection !== null &&\r\n            intersection.geometry.coordinates.length > 0\r\n          ) {\r\n            drawRegions = intersection.geometry.coordinates.map((roi_region) =>\r\n              createRegionRoi(\r\n                roi_region,\r\n                this.structures[this.selectedLayer].color,\r\n                this.structures[this.selectedLayer].isSubtype,\r\n                false, // Not fully loaded\r\n                this.structures[this.selectedLayer].id,\r\n                false // Overlapping items cannot be objects\r\n              )\r\n            );\r\n          }\r\n          if (!this.clear) {\r\n            for (let roi of this.layer.regionRois) {\r\n              historyItem.push({ add: false, id: histId, roi: roi });\r\n            }\r\n            this.layer.regionRois = [];\r\n            this.roiLayers[this.selectedLayer].tree.clear();\r\n          }\r\n        }\r\n        // Convert or copy all: add all found ROIs to the new ROIs\r\n        else {\r\n          drawRegions = allRegions;\r\n        }\r\n      }\r\n\r\n      //For convert, delete the ROIs from structure A before writing them to B\r\n      if (\r\n        !this.clear &&\r\n        (this.mode === \"convert\" || this.mode === \"convertAll\")\r\n      ) {\r\n        if (typeof drawRegions !== \"undefined\") {\r\n          updateLayer(\r\n            this.roiLayers[foundRegionIndex].layer,\r\n            { regions: drawRegions, inverted: false },\r\n            true, // delete old poly\r\n            color,\r\n            subtype,\r\n            name,\r\n            this.roiLayers[foundRegionIndex].tree,\r\n            null,\r\n            null,\r\n            false,\r\n            null,\r\n            this.structures[foundRegionIndex].id,\r\n            null,\r\n            null,\r\n            foundRoi.isObject\r\n          );\r\n        }\r\n      }\r\n\r\n      // Write the new regions to the selected layer\r\n      if (typeof drawRegions !== \"undefined\") {\r\n        updateLayer(\r\n          this.layer,\r\n          { regions: drawRegions, inverted: false },\r\n          this.clear,\r\n          color,\r\n          subtype,\r\n          name,\r\n          this.roiLayers[this.selectedSameLayer].tree,\r\n          -1,\r\n          false,\r\n          this.mode === \"overlap\",\r\n          null,\r\n          this.structures[this.selectedLayer].id,\r\n          null,\r\n          null,\r\n          foundRoi.isObject\r\n        );\r\n      }\r\n\r\n      window.projectHistory.add(historyItem);\r\n\r\n      const historyLength2 = window.projectHistory.getHistoryLength();\r\n      window.projectHistory.mergePastItems(historyLength2 - historyLength);\r\n    }\r\n  }\r\n\r\n  drawCustomCursor() {}\r\n\r\n  exit() {}\r\n\r\n  renderConfiguration() {\r\n    return (\r\n      <div>\r\n        <Typography variant=\"h6\">{this.name}:</Typography>\r\n        <ConfigForm\r\n          mode={this.mode}\r\n          includeBaseROI={this.includeBaseROI}\r\n          onChange={(e) => {\r\n            this.includeBaseROI = e;\r\n          }}\r\n          onChangeMode={(e) => {\r\n            this.mode = e;\r\n          }}\r\n        />\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nclass ConfigForm extends Component {\r\n  state = { mode: \"copy\" };\r\n  render() {\r\n    let { onChange, onChangeMode } = this.props;\r\n    let { mode, includeBaseROI } = this.state;\r\n    return (\r\n      <div>\r\n        <FormControl component=\"fieldset\" fullWidth>\r\n          <RadioGroup\r\n            value={mode}\r\n            aria-label=\"mode\"\r\n            name=\"mode\"\r\n            onChange={(e) => {\r\n              onChangeMode(e.target.value);\r\n              this.setState({ mode: e.target.value });\r\n            }}\r\n          >\r\n            <FormGroup row>\r\n              <FormControlLabel\r\n                control={<Radio color=\"primary\" value=\"copy\" />}\r\n                label=\"Copy\"\r\n                style={{ width: \"150px\" }}\r\n              />\r\n              <FormControlLabel\r\n                color=\"primary\"\r\n                control={<Radio color=\"primary\" value=\"copyAll\" />}\r\n                label=\"Copy all\"\r\n              />\r\n            </FormGroup>\r\n\r\n            <FormGroup row>\r\n              <FormControlLabel\r\n                color=\"primary\"\r\n                control={<Radio color=\"primary\" value=\"convert\" />}\r\n                label=\"Convert\"\r\n                style={{ width: \"150px\" }}\r\n              />\r\n              <FormControlLabel\r\n                control={<Radio color=\"primary\" value=\"convertAll\" />}\r\n                label=\"Convert all\"\r\n              />\r\n            </FormGroup>\r\n            <FormGroup row>\r\n              <FormControlLabel\r\n                control={<Radio color=\"primary\" value=\"overlap\" />}\r\n                label=\"Overlap\"\r\n                style={{ width: \"150px\" }}\r\n              />\r\n              <FormControlLabel\r\n                control={<Radio color=\"primary\" value=\"overlapAll\" />}\r\n                label=\"Overlap all\"\r\n              />\r\n            </FormGroup>\r\n          </RadioGroup>\r\n        </FormControl>\r\n        <FormControl component=\"fieldset\">\r\n          {\r\n            <FormControlLabel\r\n              control={\r\n                <Checkbox\r\n                  name=\"CheckboxIncludeBaseROI\"\r\n                  value={includeBaseROI}\r\n                  color=\"primary\"\r\n                  onChange={(e) => {\r\n                    onChange(e.target.checked);\r\n                    this.setState({ includeBaseROI: e.target.checked });\r\n                  }}\r\n                />\r\n              }\r\n              label=\"Include Base ROI\"\r\n            />\r\n          }\r\n        </FormControl>\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nConfigForm.propTypes = {\r\n  onChange: PropTypes.func,\r\n  onChangeMode: PropTypes.func,\r\n};\r\n\r\nexport default CopyTool;\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport { FormControl, FormControlLabel, Checkbox } from \"@mui/material\";\r\n\r\nclass OverlapConfigForm extends Component {\r\n  state = {\r\n    removeOverlap: this.props.removeOverlap ? true : false,\r\n    removeOverlapSame: this.props.removeOverlapSame ? true : false,\r\n    useNodeDrawingMode: this.props.useNodeDrawingMode ? true : false,\r\n  };\r\n\r\n  render() {\r\n    const {\r\n      onChangeRemoveOverlap,\r\n      onChangeRemoveOverlapSame,\r\n      onChangeUseNodeDrawingMode,\r\n    } = this.props;\r\n    const { removeOverlap, removeOverlapSame, useNodeDrawingMode } = this.state;\r\n    return (\r\n      <div style={{ marginRight: \"15px\" }}>\r\n        <FormControl component=\"fieldset\" fullWidth>\r\n          <div>\r\n            <FormControlLabel\r\n              control={\r\n                <Checkbox\r\n                  name=\"CheckboxRemoveOverlapSame\"\r\n                  color=\"primary\"\r\n                  checked={removeOverlapSame}\r\n                  onChange={(e) => {\r\n                    onChangeRemoveOverlapSame(e.target.checked);\r\n                    this.setState({ removeOverlapSame: e.target.checked });\r\n                  }}\r\n                  value=\"remove overlaps of same structure\"\r\n                />\r\n              }\r\n              label=\"remove overlaps of same structure\"\r\n            />\r\n          </div>\r\n          <div>\r\n            <FormControlLabel\r\n              control={\r\n                <Checkbox\r\n                  name=\"CheckboxRemoveOverlap\"\r\n                  color=\"primary\"\r\n                  checked={removeOverlap}\r\n                  onChange={(e) => {\r\n                    onChangeRemoveOverlap(e.target.checked);\r\n                    this.setState({ removeOverlap: e.target.checked });\r\n                  }}\r\n                  value=\"remove overlaps of same level\"\r\n                />\r\n              }\r\n              label=\"remove overlaps of same visible level\"\r\n            />\r\n          </div>\r\n          {typeof this.props.useNodeDrawingMode !== \"undefined\" && (\r\n            <div>\r\n              <FormControlLabel\r\n                control={\r\n                  <Checkbox\r\n                    name=\"CheckboxUseNodeDrawingMode\"\r\n                    color=\"primary\"\r\n                    checked={useNodeDrawingMode}\r\n                    onChange={(e) => {\r\n                      onChangeUseNodeDrawingMode(e.target.checked);\r\n                      this.setState({ useNodeDrawingMode: e.target.checked });\r\n                    }}\r\n                    value=\"Use Node drawing mode!\"\r\n                  />\r\n                }\r\n                label=\"Use Node drawing mode (apply with other mouse button)!\"\r\n              />\r\n            </div>\r\n          )}\r\n        </FormControl>\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nOverlapConfigForm.propTypes = {\r\n  removeOverlap: PropTypes.bool,\r\n  removeOverlapSame: PropTypes.bool,\r\n  useNodeDrawingMode: PropTypes.bool,\r\n  onChangeUseNodeDrawingMode: PropTypes.func,\r\n  onChangeRemoveOverlap: PropTypes.func,\r\n  onChangeRemoveOverlapSame: PropTypes.func,\r\n};\r\n\r\nexport default OverlapConfigForm;\r\n","import {\r\n  updateDrawLayer,\r\n  updateLayer,\r\n  findSiblingRoiLayers,\r\n  findSameLayer,\r\n  findClickedRoi,\r\n  checkIfStructureHidden,\r\n} from \"../../utils/PolygonUtil\";\r\n\r\nimport { Typography } from \"@mui/material\";\r\nimport { pointsToCirclePolygon } from \"../../utils/PolygonUtil\";\r\nimport Tool from \"./Tool\";\r\nimport React from \"react\";\r\nimport OverlapConfigForm from \"./ConfigForms/OverlapConfigForm\";\r\n\r\nclass EllipseTool extends Tool {\r\n  name = \"Ellipse\";\r\n  noConfig = false;\r\n  flag = false;\r\n  downScale = 2;\r\n  points = [];\r\n  removeOverlap = null;\r\n  removeOverlapSame = null;\r\n  tempRemoveOverlap = null;\r\n  tempRemoveOverlapSame = null;\r\n\r\n  setLayer(obj) {\r\n    this.ome = obj.ome;\r\n    this.layer = obj.layer;\r\n    this.roiLayers = obj.roiLayers;\r\n    let layerResults = findSameLayer(obj.structures, obj.selectedLayer);\r\n    this.selectedLayer = layerResults[0];\r\n    this.parentLayer = layerResults[1];\r\n    this.originalSelectedLayer = obj.selectedLayer;\r\n    this.structures = obj.structures;\r\n    this.drawLayer = obj.drawLayer;\r\n\r\n    const project = obj.viewerConfig_project;\r\n    if (this.removeOverlap === null) {\r\n      this.removeOverlap = project.projectProperties[\"PreventOverlap\"];\r\n    }\r\n    if (this.tempRemoveOverlap === null) {\r\n      this.tempRemoveOverlap = project.projectProperties[\"PreventOverlap\"];\r\n    }\r\n    if (this.removeOverlapSame === null) {\r\n      this.removeOverlapSame = project.projectProperties[\"PreventOverlapSame\"];\r\n    }\r\n\r\n    // set removeOverlap\r\n    // save current settings (in tempRemoveOverlap) if structure gets changed\r\n    if (obj.selectedLayer === 0) {\r\n      if (!this.noConfig) {\r\n        this.noConfig = true;\r\n        this.tempRemoveOverlap = this.removeOverlap;\r\n        this.tempRemoveOverlapSame = this.removeOverlapSame;\r\n        this.removeOverlap = false;\r\n        this.removeOverlapSame = false;\r\n        window.forceSidebarUpdate();\r\n      }\r\n    } else {\r\n      if (this.noConfig) {\r\n        this.noConfig = false;\r\n        this.removeOverlap = this.tempRemoveOverlap;\r\n        this.removeOverlapSame = this.tempRemoveOverlapSame;\r\n        window.forceSidebarUpdate();\r\n      }\r\n    }\r\n  }\r\n\r\n  setPreviewRect() {}\r\n\r\n  mouse(params) {\r\n    let { event, p, color, subtype, name, positionInRoiLayer, fullyLoaded } =\r\n      params;\r\n    if (\r\n      event.type === \"mousedown\" &&\r\n      (event.button === 0 || event.button === 2)\r\n    ) {\r\n      checkIfStructureHidden(\r\n        this.structures,\r\n        this.selectedLayer,\r\n        subtype,\r\n        name,\r\n        color\r\n      );\r\n      this.drawLayer.regionRois = [];\r\n      this.drawLayer.inverted = false;\r\n      // right mouse button -> clear\r\n      this.clear = event.button === 2;\r\n      this.drawLayer.clear = this.clear;\r\n\r\n      // update position history\r\n      this.startPoint = p;\r\n\r\n      // set drawing flag\r\n      this.flag = true;\r\n\r\n      // check if mouse down is inside region? => exapand region\r\n      if (this.removeOverlapSame) {\r\n        this.clickedOnRoi = findClickedRoi(\r\n          p,\r\n          this.selectedLayer,\r\n          this.structures,\r\n          this.roiLayers,\r\n          this.includeBaseROI\r\n        );\r\n      }\r\n    } else if (\r\n      event.type === \"mouseup\" ||\r\n      (this.flag && event.type === \"mouseleave\")\r\n    ) {\r\n      // release drawing flag\r\n      this.flag = false;\r\n      let drawRegion = {\r\n        regions: [],\r\n        inverted: false,\r\n      };\r\n      if (this.drawLayer.regionRois.length > 0) {\r\n        drawRegion.regions = [this.drawLayer.regionRois[0]];\r\n\r\n        // soll der selected layer sein\r\n        let overlapRoiLayers = [];\r\n        if (this.removeOverlapSame) {\r\n          overlapRoiLayers.push(this.roiLayers[this.selectedLayer]);\r\n        }\r\n        if (this.removeOverlap) {\r\n          let siblingRoiLayers = findSiblingRoiLayers(\r\n            this.structures,\r\n            this.selectedLayer,\r\n            this.roiLayers\r\n          );\r\n          siblingRoiLayers.map((layer) => overlapRoiLayers.push(layer));\r\n        }\r\n\r\n        updateLayer(\r\n          this.layer,\r\n          drawRegion,\r\n          this.clear,\r\n          color,\r\n          subtype,\r\n          name,\r\n          this.roiLayers[this.selectedLayer].tree,\r\n          positionInRoiLayer,\r\n          fullyLoaded,\r\n          false,\r\n          this.roiLayers[this.parentLayer],\r\n          this.structures[this.originalSelectedLayer].id,\r\n          overlapRoiLayers,\r\n          this.clickedOnRoi\r\n        );\r\n        this.drawLayer.regionRois = [];\r\n      }\r\n    } else if (event.type === \"mousemove\") {\r\n      if (this.flag) {\r\n        //draw Circle\r\n        let drawRegion = pointsToCirclePolygon(\r\n          this.startPoint,\r\n          p,\r\n          32,\r\n          this.ome.sizeX,\r\n          this.ome.sizeY\r\n        );\r\n\r\n        this.drawLayer.regionRois = []; //only one region will be drawn to the draw layer\r\n        updateDrawLayer(\r\n          this.drawLayer,\r\n          drawRegion,\r\n          false,\r\n          color,\r\n          subtype,\r\n          name\r\n        );\r\n      }\r\n    }\r\n  }\r\n\r\n  drawCustomCursor() {\r\n    // no custom cursor\r\n  }\r\n\r\n  exit() {}\r\n\r\n  renderConfiguration() {\r\n    return (\r\n      <div>\r\n        <Typography variant=\"h6\">{this.name}:</Typography>\r\n        <OverlapConfigForm\r\n          removeOverlap={this.removeOverlap}\r\n          removeOverlapSame={this.removeOverlapSame}\r\n          onChangeRemoveOverlap={(e) => (this.removeOverlap = e)}\r\n          onChangeRemoveOverlapSame={(e) => (this.removeOverlapSame = e)}\r\n        />\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nexport default EllipseTool;\r\n","import { findClickedRoi, pointInsideRegion } from \"../../utils/PolygonUtil\";\r\nimport { RegionROI } from \"../../utils/ROI\";\r\nimport Tool from \"./Tool\";\r\n\r\nclass FillTool extends Tool {\r\n  name = \"Fill\";\r\n  noConfig = true;\r\n  includeBaseROI = false;\r\n\r\n  setLayer(obj) {\r\n    this.layer = obj.layer;\r\n    this.roiLayers = obj.roiLayers;\r\n    this.selectedLayer = obj.selectedLayer;\r\n    this.structures = obj.structures;\r\n  }\r\n\r\n  setPreviewRect() {}\r\n\r\n  getParentIndex = (parentId) => {\r\n    let structures = this.structures;\r\n    if (structures.length < 1) {\r\n      structures = this.state.project.viewerConfig.project.structures;\r\n    }\r\n    // return index of parent structures in all structures\r\n    const parentIndex = structures.findIndex(\r\n      (element) => element.id === parentId\r\n    );\r\n    return parentIndex;\r\n  };\r\n\r\n  getParentIndexLayer = () => {\r\n    const structures = this.structures;\r\n    const structure = this.structures[this.selectedLayer];\r\n    // get index of parent roilayer\r\n    let index = structures.findIndex((element) => element.id === structure.id);\r\n    while (\r\n      structures[index].subtypeLevel !== 0 &&\r\n      structures[index].classificationSubtype\r\n    ) {\r\n      let pIndex = this.getParentIndex(structures[index].parentId);\r\n      if (pIndex >= 0) index = pIndex;\r\n      else break;\r\n    }\r\n    return structures.findIndex((element) => element === structures[index]);\r\n  };\r\n\r\n  determineCorrectLayer = (parentLayer) => {\r\n    let correctLayer;\r\n    if (parentLayer !== this.structures[this.selectedLayer]) {\r\n      correctLayer = parentLayer;\r\n    } else {\r\n      correctLayer = this.selectedLayer;\r\n    }\r\n    return correctLayer;\r\n  };\r\n\r\n  fillHole(p) {\r\n    const parentLayer = this.getParentIndexLayer();\r\n    const correctLayer = this.determineCorrectLayer(parentLayer);\r\n    const histId = this.structures[correctLayer].id;\r\n    const tree = this.roiLayers[correctLayer].tree;\r\n    const layer = this.roiLayers[correctLayer].layer;\r\n    const regionRois = tree\r\n      .search({\r\n        minX: p.x,\r\n        minY: p.y,\r\n        maxX: p.x,\r\n        maxY: p.y,\r\n      })\r\n      .sort((a, b) => a.roi.area - b.roi.area); //sorted rois, that are intersecting with clicked point\r\n    let historyItem = [];\r\n\r\n    for (let idx = 0; idx < regionRois.length; idx++) {\r\n      let mainRoi = regionRois[idx].roi;\r\n      if (mainRoi.regions.length > 1) {\r\n        let mainRoiCopy = new RegionROI(mainRoi);\r\n        mainRoiCopy.regions = [...mainRoi.regions];\r\n        historyItem.push({ add: false, id: histId, roi: mainRoi.copy() });\r\n\r\n        // if has holes\r\n        for (let i = 1; i < mainRoi.regions.length; i++) {\r\n          const hole = mainRoi.regions[i];\r\n          const tempHoleRoi = new RegionROI({ regions: [hole] });\r\n          if (pointInsideRegion(p, hole)) {\r\n            //roi has clicked hole\r\n            mainRoi.regions.splice(i, 1); //delete hole of affected polygon\r\n            mainRoi.intRegions = undefined;\r\n            const overlappingRegionRoiTreeItems = tree\r\n              .search(tempHoleRoi.treeItem)\r\n              .filter((treeItem) => {\r\n                const p = {\r\n                  x: treeItem.roi.regions[0][0][0],\r\n                  y: treeItem.roi.regions[0][0][1],\r\n                };\r\n                return pointInsideRegion(p, hole);\r\n              });\r\n            let possibleRoiCandidates = [];\r\n            if (overlappingRegionRoiTreeItems.length > 0) {\r\n              for (let overlapTreeItem of overlappingRegionRoiTreeItems) {\r\n                const oRoi = overlapTreeItem.roi;\r\n                if (oRoi.uuid === mainRoi.uuid || oRoi.area > tempHoleRoi.area)\r\n                  continue;\r\n\r\n                possibleRoiCandidates.push(oRoi);\r\n              }\r\n            }\r\n\r\n            let finalPossibleRoiCandidates = [...possibleRoiCandidates];\r\n\r\n            let roisToExclude = [];\r\n\r\n            //todo: handle holes\r\n            for (let possibleOverlapRoi of possibleRoiCandidates) {\r\n              let excludedOverlapRoi = null;\r\n              const p = {\r\n                x: possibleOverlapRoi.regions[0][0][0],\r\n                y: possibleOverlapRoi.regions[0][0][1],\r\n              };\r\n              for (let fRoi of finalPossibleRoiCandidates) {\r\n                if (\r\n                  fRoi.regions.length > 1 &&\r\n                  possibleOverlapRoi.area < fRoi.area &&\r\n                  pointInsideRegion(p, fRoi.regions[0])\r\n                ) {\r\n                  excludedOverlapRoi = possibleOverlapRoi;\r\n                  break;\r\n                }\r\n              }\r\n              if (excludedOverlapRoi !== null) {\r\n                roisToExclude.push(excludedOverlapRoi);\r\n                finalPossibleRoiCandidates.filter(\r\n                  (item) => item.uuid !== excludedOverlapRoi.uuid\r\n                );\r\n              }\r\n            }\r\n            finalPossibleRoiCandidates = finalPossibleRoiCandidates.filter(\r\n              (item) => {\r\n                const index = roisToExclude.findIndex(\r\n                  (r) => r.uuid === item.uuid\r\n                );\r\n                return index < 0;\r\n              }\r\n            );\r\n\r\n            for (let fRoi of finalPossibleRoiCandidates) {\r\n              if (fRoi.regions.length > 1) {\r\n                for (let h = 1; h < fRoi.regions.length; h++) {\r\n                  mainRoi.regions.push(fRoi.regions[h]);\r\n                }\r\n                mainRoi.intRegions = undefined;\r\n              }\r\n              tree.remove(fRoi.treeItem);\r\n              historyItem.push({ add: false, id: histId, roi: fRoi.copy() });\r\n            }\r\n            break;\r\n          }\r\n        }\r\n        historyItem.push({ add: true, id: histId, roi: mainRoi });\r\n        if (layer.regionRois.length !== tree.all().length) {\r\n          layer.regionRois = tree.all().map((treeItem) => treeItem.roi);\r\n        }\r\n        window.projectHistory.add(historyItem);\r\n        return;\r\n      }\r\n    }\r\n  }\r\n\r\n  mouse(params) {\r\n    const { event, p } = params;\r\n    // mouse middle button\r\n    if (event.button === 1) {\r\n      return;\r\n    }\r\n\r\n    if (event.type === \"mousedown\" && event.button === 0) {\r\n      const clickedOnRoi = findClickedRoi(\r\n        p,\r\n        this.selectedLayer,\r\n        this.structures,\r\n        this.roiLayers,\r\n        this.includeBaseROI\r\n      );\r\n      if (!clickedOnRoi) {\r\n        //only try finding hole, if not clicked on roi\r\n        this.fillHole(p);\r\n      }\r\n    }\r\n  }\r\n\r\n  drawCustomCursor() {}\r\n\r\n  exit() {}\r\n\r\n  renderConfiguration() {\r\n    return null;\r\n  }\r\n}\r\n\r\nexport default FillTool;\r\n","import React from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n\r\nimport {\r\n  Grid,\r\n  FormControl,\r\n  TextField,\r\n  FormHelperText,\r\n  Slider,\r\n} from \"@mui/material\";\r\n\r\nconst styles = {\r\n  sliderContainer: {\r\n    margin: 0,\r\n    width: \"100%\",\r\n  },\r\n  input: {\r\n    width: 55,\r\n  },\r\n};\r\n\r\nclass CustomRangeSlider extends React.Component {\r\n  transformExponential(v, exponent) {\r\n    let result = v ** (1 / exponent);\r\n    return result;\r\n  }\r\n  render() {\r\n    const { params, classes } = this.props;\r\n    return (\r\n      <FormControl key={params.key} component=\"fieldset\" fullWidth>\r\n        <FormHelperText>{params.label}</FormHelperText>\r\n        <Grid\r\n          className={classes.sliderContainer}\r\n          container\r\n          spacing={2}\r\n          alignItems=\"center\"\r\n        >\r\n          <Grid item>\r\n            <TextField\r\n              className={classes.input}\r\n              name=\"Textfield\"\r\n              variant=\"standard\"\r\n              size=\"small\"\r\n              value={params.valueMin}\r\n              margin=\"dense\"\r\n              onChange={(e) => {\r\n                const value = parseInt(e.target.value, 10);\r\n                params.onSliderChange([value, params.valueMax]);\r\n                if (params.onChangeMin) params.onChangeMin(value);\r\n              }}\r\n              onKeyDown={(e) => {\r\n                if (e.code === \"Enter\" && params.onKeyEnter) {\r\n                  params.onKeyEnter();\r\n                }\r\n              }}\r\n              inputProps={{\r\n                step: params.step,\r\n                min: params.min,\r\n                max: params.max,\r\n                type: \"number\",\r\n                \"aria-labelledby\": \"input-slider\",\r\n                role: \"numberInput1\",\r\n              }}\r\n            />\r\n          </Grid>\r\n          <Grid item xs>\r\n            <Slider\r\n              min={this.transformExponential(params.min, 2)}\r\n              max={this.transformExponential(params.max, 2)}\r\n              step={this.transformExponential(params.step, 2)}\r\n              value={[\r\n                this.transformExponential(params.valueMin, 2),\r\n                this.transformExponential(params.valueMax, 2),\r\n              ]}\r\n              onChange={(e) => {\r\n                const v = e.target.value;\r\n                let value = [parseInt(v[0] ** 2, 10), parseInt(v[1] ** 2, 10)];\r\n                params.onSliderChange(value);\r\n              }}\r\n              onChangeCommitted={params.onSliderchangeComitted}\r\n            />\r\n          </Grid>\r\n          <Grid item>\r\n            <TextField\r\n              className={classes.input}\r\n              name=\"Textfield\"\r\n              variant=\"standard\"\r\n              size=\"small\"\r\n              value={params.valueMax}\r\n              margin=\"dense\"\r\n              onChange={(e) => {\r\n                const value = parseInt(e.target.value, 10);\r\n                params.onSliderChange([params.valueMin, value]);\r\n                if (params.onChangeMax) params.onChangeMax(value);\r\n              }}\r\n              onKeyDown={(e) => {\r\n                if (e.code === \"Enter\" && params.onKeyEnter) {\r\n                  params.onKeyEnter();\r\n                }\r\n              }}\r\n              inputProps={{\r\n                step: params.step,\r\n                min: params.min,\r\n                max: params.max,\r\n                type: \"number\",\r\n                \"aria-labelledby\": \"input-slider\",\r\n                role: \"numberInput2\",\r\n              }}\r\n            />\r\n          </Grid>\r\n        </Grid>\r\n      </FormControl>\r\n    );\r\n  }\r\n}\r\n\r\nCustomRangeSlider.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  params: PropTypes.object.isRequired,\r\n};\r\n\r\nexport default withStyles(styles)(CustomRangeSlider);\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport Pagination from \"@mui/material/Pagination\";\r\n\r\nimport {\r\n  getContainedRegionRois,\r\n  getParentIndexLayer,\r\n} from \"../../utils/StructuresUtils\";\r\nimport { pointInside } from \"../../utils/PolygonUtil\";\r\n\r\nimport {\r\n  Tooltip,\r\n  IconButton,\r\n  TextField,\r\n  FormControlLabel,\r\n  Checkbox,\r\n  Typography,\r\n  Button,\r\n} from \"@mui/material\";\r\n\r\nimport { Delete } from \"@mui/icons-material\";\r\nimport Tool from \"./Tool\";\r\nimport RBush from \"rbush\";\r\nimport CustomRangeSlider from \"../../../globalComponents/CustomRangeSlider\";\r\n\r\nclass FilterAnnotationsTool extends Tool {\r\n  name = \"Filter Annotations\";\r\n  selection = null;\r\n  selectionIdx = 0;\r\n  smallerIdx = -2;\r\n  biggerIdx = -2;\r\n  sortedTreeItems = [];\r\n  checkJumps = true;\r\n  regionRois = [];\r\n  tree = new RBush();\r\n  structure = null;\r\n  parentIndex = 0;\r\n  randSliderKey = 0;\r\n  rangeSliderParams = {\r\n    key: \"0\",\r\n    label: \"\",\r\n    min: 0,\r\n    max: 10000,\r\n    valueMin: 0,\r\n    valueMax: 10000,\r\n    step: 1,\r\n    onKeyEnter: () => this.updateRangeMode(),\r\n    onSliderChange: (value) => {\r\n      this.rangeSliderParams.valueMin = value[0];\r\n      this.rangeSliderParams.valueMax = value[1];\r\n      window.forceSidebarUpdate();\r\n    },\r\n    onSliderchangeComitted: () => this.updateRangeMode(),\r\n  };\r\n\r\n  updateRangeMode = () => {\r\n    if (this.sortedTreeItems && this.sortedTreeItems.length > 0) {\r\n      let smallerIdx = -2;\r\n      let biggerIdx = -2;\r\n      for (let i = 0; i < this.sortedTreeItems.length; i++) {\r\n        const treeItem = this.sortedTreeItems[i];\r\n        if (\r\n          treeItem.roi.area > this.rangeSliderParams.valueMin &&\r\n          smallerIdx === -2\r\n        ) {\r\n          smallerIdx = i - 1;\r\n        }\r\n        if (\r\n          treeItem.roi.area > this.rangeSliderParams.valueMax &&\r\n          biggerIdx === -2\r\n        ) {\r\n          biggerIdx = i;\r\n          break;\r\n        }\r\n      }\r\n      if (smallerIdx !== this.smallerIdx && smallerIdx >= 0) {\r\n        this.smallerIdx = smallerIdx;\r\n        this.selectionIdx = this.smallerIdx;\r\n        this.selection = this.sortedTreeItems[this.selectionIdx];\r\n        if (this.checkJumps) window.zoomToRect(this.selection.roi.bounds);\r\n        window.forceSidebarUpdate();\r\n      } else if (biggerIdx !== this.biggerIdx && biggerIdx >= 0) {\r\n        this.biggerIdx = biggerIdx;\r\n        this.selectionIdx = this.biggerIdx;\r\n        this.selection = this.sortedTreeItems[this.selectionIdx];\r\n        if (this.checkJumps) window.zoomToRect(this.selection.roi.bounds);\r\n        window.forceSidebarUpdate();\r\n      } else if (smallerIdx < 0 || biggerIdx < 0) {\r\n        if (smallerIdx > 0) {\r\n          this.selection = this.sortedTreeItems[smallerIdx];\r\n        } else if (biggerIdx > 0) {\r\n          this.selection = this.sortedTreeItems[biggerIdx];\r\n        }\r\n        this.smallerIdx = smallerIdx;\r\n        this.biggerIdx = biggerIdx;\r\n        window.forceSidebarUpdate();\r\n      }\r\n    }\r\n  };\r\n\r\n  setLayer(obj) {\r\n    this.structures = obj.structures;\r\n    this.layer = obj.layer;\r\n    this.roiLayers = obj.roiLayers;\r\n    this.selectedLayer = obj.selectedLayer;\r\n    this.structure = obj.structures[obj.selectedLayer];\r\n    this.regionRois = getContainedRegionRois(\r\n      this.structure,\r\n      this.structures,\r\n      this.roiLayers\r\n    );\r\n    this.parentIndex = getParentIndexLayer(this.structure, this.structures);\r\n    this.tree.clear();\r\n    this.tree.load(this.regionRois.map((item) => item.treeItem));\r\n    this.updateSortedTreeItems();\r\n    this.groupPermissions = obj.groupPermissions;\r\n  }\r\n\r\n  setPreviewRect() {}\r\n\r\n  findSmallestTreeItem(p) {\r\n    let minArea = Number.MAX_SAFE_INTEGER;\r\n    let resultItem;\r\n    if (this.structures[this.selectedLayer].visible) {\r\n      let treeItems = this.tree.search({\r\n        minX: p.x,\r\n        minY: p.y,\r\n        maxX: p.x,\r\n        maxY: p.y,\r\n      });\r\n      for (let treeItem of treeItems) {\r\n        let b = treeItem.roi.bounds;\r\n\r\n        if (pointInside(p, treeItem.roi)) {\r\n          let bArea = (b.right - b.left) * (b.bottom - b.top);\r\n          if (bArea < minArea) {\r\n            minArea = bArea;\r\n            resultItem = treeItem;\r\n          }\r\n        }\r\n      }\r\n    }\r\n    return resultItem;\r\n  }\r\n\r\n  deleteSmaller = (idx) => {\r\n    let historyItem = [];\r\n    let histId = this.structures[this.parentIndex].id;\r\n    this.biggerIdx -= idx + 1;\r\n    let idxToDelete = idx;\r\n    const roiLayer = this.roiLayers[this.parentIndex];\r\n    while (idxToDelete >= 0) {\r\n      const treeItemToDelete = this.sortedTreeItems[idxToDelete];\r\n      roiLayer.tree.remove(treeItemToDelete);\r\n      this.tree.remove(treeItemToDelete);\r\n      historyItem.push({ add: false, id: histId, roi: treeItemToDelete.roi });\r\n      idxToDelete--;\r\n    }\r\n    this.regionRois = this.tree.all().map((treeItem) => treeItem.roi);\r\n    this.roiLayers[this.parentIndex].layer.regionRois = this.roiLayers[\r\n      this.parentIndex\r\n    ].tree\r\n      .all()\r\n      .map((treeItem) => treeItem.roi);\r\n\r\n    this.updateSortedTreeItems();\r\n    this.selection = null;\r\n    this.smallerIdx = -2;\r\n    window.forceSidebarUpdate();\r\n    window.projectHistory.add(historyItem);\r\n  };\r\n\r\n  deleteBigger = (idx) => {\r\n    let historyItem = [];\r\n    let histId = this.structures[this.parentIndex].id;\r\n    let idxToDelete = idx;\r\n    const roiLayer = this.roiLayers[this.parentIndex];\r\n    while (idxToDelete < this.sortedTreeItems.length) {\r\n      const treeItemToDelete = this.sortedTreeItems[idxToDelete];\r\n      roiLayer.tree.remove(treeItemToDelete);\r\n      this.tree.remove(treeItemToDelete);\r\n      historyItem.push({ add: false, id: histId, roi: treeItemToDelete.roi });\r\n      idxToDelete++;\r\n    }\r\n    this.regionRois = this.tree.all().map((treeItem) => treeItem.roi);\r\n    this.roiLayers[this.parentIndex].layer.regionRois = this.roiLayers[\r\n      this.parentIndex\r\n    ].tree\r\n      .all()\r\n      .map((treeItem) => treeItem.roi);\r\n\r\n    this.updateSortedTreeItems();\r\n    this.selection = null;\r\n    this.biggerIdx = -2;\r\n    window.forceSidebarUpdate();\r\n    window.projectHistory.add(historyItem);\r\n  };\r\n\r\n  deleteSelection() {\r\n    let historyItem = [];\r\n    let histId = this.structures[this.parentIndex].id;\r\n    this.roiLayers[this.parentIndex].tree.remove(this.selection);\r\n    this.tree.remove(this.selection);\r\n    historyItem.push({ add: false, id: histId, roi: this.selection.roi });\r\n    this.regionRois = this.tree.all().map((treeItem) => treeItem.roi);\r\n    this.roiLayers[this.parentIndex].layer.regionRois = this.roiLayers[\r\n      this.parentIndex\r\n    ].tree\r\n      .all()\r\n      .map((treeItem) => treeItem.roi);\r\n\r\n    this.updateSortedTreeItems();\r\n\r\n    if (this.selectionIdx < this.sortedTreeItems.length) {\r\n      this.selection = this.sortedTreeItems[this.selectionIdx];\r\n      if (this.checkJumps) window.zoomToRect(this.selection.roi.bounds);\r\n    } else if (this.sortedTreeItems.length > 0) {\r\n      this.selectionIdx = this.sortedTreeItems.length - 1;\r\n      this.selection = this.sortedTreeItems[this.selectionIdx];\r\n      if (this.checkJumps) window.zoomToRect(this.selection.roi.bounds);\r\n    } else {\r\n      this.selection = null;\r\n    }\r\n    window.forceSidebarUpdate();\r\n    window.projectHistory.add(historyItem);\r\n  }\r\n  /**\r\n   * handle shortcuts\r\n   * @param {ActionEvent} event Event when keyboard button is pressed\r\n   */\r\n  onKeyDown(event) {\r\n    if (\r\n      event.key === \"Delete\" &&\r\n      this.selection &&\r\n      this.groupPermissions.canAnnotate\r\n    ) {\r\n      this.deleteSelection();\r\n    }\r\n  }\r\n\r\n  mouse(params) {\r\n    let { event, p } = params;\r\n    this.curX = p.x;\r\n    this.curY = p.y;\r\n\r\n    // mouse middle button\r\n    if (event.button === 1) {\r\n      return;\r\n    }\r\n\r\n    if (event.type === \"mousedown\") {\r\n      let treeItem = this.findSmallestTreeItem(p);\r\n      this.selection = treeItem;\r\n      this.updateSortedTreeItems();\r\n      if (this.selection) {\r\n        this.selectionIdx = this.selection.sortIdx;\r\n        this.smallerIdx = -2;\r\n        this.biggerIdx = -2;\r\n        window.forceSidebarUpdate();\r\n      }\r\n    }\r\n  }\r\n\r\n  /**\r\n   * Draw a custom cursor\r\n   */\r\n  drawCustomCursor(ctx) {\r\n    if (this.selection) {\r\n      ctx.beginPath();\r\n      ctx.globalAlpha = 1.0;\r\n      ctx.strokeStyle = \"#ffffff\";\r\n      let b = this.selection.roi.bounds;\r\n      // no custom cursor\r\n      ctx.rect(b.left, b.top, b.right - b.left, b.bottom - b.top);\r\n      ctx.stroke();\r\n      ctx.closePath();\r\n    }\r\n  }\r\n\r\n  /**\r\n   * Sorts all rois of the selected structure by area, should they not already be sorted.\r\n   */\r\n  updateSortedTreeItems = () => {\r\n    if (this.sortedTreeItems !== this.regionRois) {\r\n      this.sortedTreeItems = this.tree.all().sort((treeItem1, treeItem2) => {\r\n        return treeItem1.roi.area - treeItem2.roi.area;\r\n      });\r\n      for (let i = 0; i < this.sortedTreeItems.length; i++) {\r\n        this.sortedTreeItems[i][\"sortIdx\"] = i;\r\n      }\r\n      if (this.sortedTreeItems.length > 0) {\r\n        const valueIsMin =\r\n          this.rangeSliderParams.min === this.rangeSliderParams.valueMin;\r\n        const valueIsMax =\r\n          this.rangeSliderParams.max === this.rangeSliderParams.valueMax;\r\n        this.rangeSliderParams.min = parseInt(\r\n          this.sortedTreeItems[0].roi.area,\r\n          10\r\n        );\r\n        if (\r\n          this.rangeSliderParams.valueMin < this.rangeSliderParams.min ||\r\n          valueIsMin\r\n        ) {\r\n          this.rangeSliderParams.valueMin = this.rangeSliderParams.min;\r\n        }\r\n        this.rangeSliderParams.max =\r\n          parseInt(\r\n            this.sortedTreeItems[this.sortedTreeItems.length - 1].roi.area,\r\n            10\r\n          ) + 1;\r\n        if (\r\n          this.rangeSliderParams.valueMax > this.rangeSliderParams.max ||\r\n          valueIsMax\r\n        ) {\r\n          this.rangeSliderParams.valueMax = this.rangeSliderParams.max;\r\n        }\r\n      }\r\n      window.forceSidebarUpdate();\r\n    }\r\n  };\r\n\r\n  selectRegion = (v) => {\r\n    this.updateSortedTreeItems();\r\n    this.selectionIdx = v - 1;\r\n    this.selection = this.sortedTreeItems[this.selectionIdx];\r\n    if (this.selection && this.selection.roi) {\r\n      if (this.checkJumps) window.zoomToRect(this.selection.roi.bounds);\r\n      window.forceSidebarUpdate();\r\n    }\r\n  };\r\n\r\n  toggleJumps = () => {\r\n    this.checkJumps = !this.checkJumps;\r\n    window.forceSidebarUpdate();\r\n  };\r\n\r\n  exit() {}\r\n\r\n  renderConfiguration = () => {\r\n    return (\r\n      <div>\r\n        <Typography variant=\"h6\">{this.name}:</Typography>\r\n        <ConfigForm\r\n          selectionIdx={this.selectionIdx}\r\n          smallerIdx={this.smallerIdx}\r\n          biggerIdx={this.biggerIdx}\r\n          sortedTreeItems={this.sortedTreeItems}\r\n          selectRegion={(v) => this.selectRegion(v)}\r\n          delete={() => this.deleteSelection()}\r\n          regionRois={this.regionRois}\r\n          selection={this.selection}\r\n          checkJumps={this.checkJumps}\r\n          toggleJumps={() => this.toggleJumps()}\r\n          groupPermissions={this.groupPermissions}\r\n          rangeSliderParams={this.rangeSliderParams}\r\n          deleteSmaller={this.deleteSmaller}\r\n          deleteBigger={this.deleteBigger}\r\n        />\r\n      </div>\r\n    );\r\n  };\r\n}\r\n\r\nclass ConfigForm extends Component {\r\n  render() {\r\n    const smallerSelectionCount =\r\n      this.props.selectionIdx < 0 ? 0 : this.props.selectionIdx + 1;\r\n    const biggerSelectionCount =\r\n      this.props.selectionIdx < 0\r\n        ? 0\r\n        : this.props.regionRois.length - this.props.selectionIdx;\r\n    const smallerMinSliderCount =\r\n      this.props.smallerIdx < 0 ? 0 : this.props.smallerIdx;\r\n    const biggerMaxSliderCount =\r\n      this.props.biggerIdx < 0\r\n        ? 0\r\n        : this.props.regionRois.length - this.props.biggerIdx - 1;\r\n    return (\r\n      <div>\r\n        <FormControlLabel\r\n          control={\r\n            <Checkbox\r\n              name=\"CheckboxJumps\"\r\n              color=\"primary\"\r\n              checked={this.props.checkJumps}\r\n              onChange={() => {\r\n                this.props.toggleJumps();\r\n              }}\r\n              value={this.props.checkJumps}\r\n            />\r\n          }\r\n          label=\"Jump to selection\"\r\n        />\r\n        {this.props.selection &&\r\n        this.props.smallerIdx < 0 &&\r\n        this.props.biggerIdx < 0 ? (\r\n          <div>\r\n            <div>Selection:</div>\r\n            <ul>\r\n              <li>Area: {this.props.selection.roi.area.toFixed(2)} px</li>\r\n            </ul>\r\n            <div\r\n              style={{\r\n                display: \"grid\",\r\n                gridTemplateColumns: \"1fr 1fr\",\r\n                gridGap: \"8px\",\r\n              }}\r\n            >\r\n              <Button\r\n                variant=\"contained\"\r\n                color=\"primary\"\r\n                disabled={smallerSelectionCount <= 0}\r\n                onClick={() =>\r\n                  this.props.deleteSmaller(this.props.selectionIdx)\r\n                }\r\n              >\r\n                Delete {smallerSelectionCount} <br />\r\n                smaller Rois\r\n              </Button>\r\n              <Button\r\n                variant=\"contained\"\r\n                color=\"primary\"\r\n                disabled={biggerSelectionCount <= 0}\r\n                onClick={() => this.props.deleteBigger(this.props.selectionIdx)}\r\n              >\r\n                {\" \"}\r\n                Delete {biggerSelectionCount} <br />\r\n                bigger Rois\r\n              </Button>\r\n            </div>\r\n          </div>\r\n        ) : (\r\n          <div>\r\n            <div>Range:</div>\r\n            <ul>\r\n              {this.props.sortedTreeItems[this.props.smallerIdx] ? (\r\n                <li>\r\n                  First ROI smaller than minimum value:\r\n                  <ul>\r\n                    <li>\r\n                      Area:{\" \"}\r\n                      {this.props.sortedTreeItems[\r\n                        this.props.smallerIdx\r\n                      ].roi.area.toFixed(2)}{\" \"}\r\n                      px\r\n                    </li>\r\n                  </ul>\r\n                </li>\r\n              ) : (\r\n                <li>No ROI is smaller than minimum value!</li>\r\n              )}\r\n              {this.props.sortedTreeItems[this.props.biggerIdx] ? (\r\n                <li>\r\n                  First ROI bigger than maximum value:\r\n                  <ul>\r\n                    <li>\r\n                      Area:{\" \"}\r\n                      {this.props.sortedTreeItems[\r\n                        this.props.biggerIdx\r\n                      ].roi.area.toFixed(2)}{\" \"}\r\n                      px\r\n                    </li>\r\n                  </ul>\r\n                </li>\r\n              ) : (\r\n                <li>No ROI is bigger than minimum value!</li>\r\n              )}\r\n            </ul>\r\n            <div\r\n              style={{\r\n                display: \"grid\",\r\n                gridTemplateColumns: \"1fr 1fr\",\r\n                gridGap: \"8px\",\r\n              }}\r\n            >\r\n              <Button\r\n                variant=\"contained\"\r\n                color=\"primary\"\r\n                disabled={smallerMinSliderCount <= 0}\r\n                onClick={() => this.props.deleteSmaller(this.props.smallerIdx)}\r\n              >\r\n                Delete {smallerMinSliderCount} <br />\r\n                smaller Rois\r\n              </Button>\r\n              <Button\r\n                variant=\"contained\"\r\n                color=\"primary\"\r\n                disabled={biggerMaxSliderCount <= 0}\r\n                onClick={() => this.props.deleteBigger(this.props.biggerIdx)}\r\n              >\r\n                {\" \"}\r\n                Delete {biggerMaxSliderCount} <br />\r\n                bigger Rois\r\n              </Button>\r\n            </div>\r\n          </div>\r\n        )}\r\n\r\n        <CustomRangeSlider\r\n          key={this.props.randSliderKey}\r\n          params={this.props.rangeSliderParams}\r\n        />\r\n        <TextField\r\n          fullWidth\r\n          name=\"Textfield\"\r\n          label=\"Sorted object number:\"\r\n          type=\"number\"\r\n          value={this.props.selectionIdx + 1}\r\n          margin=\"normal\"\r\n          size=\"small\"\r\n          onChange={(e) => {\r\n            this.props.selectRegion(e.target.value);\r\n          }}\r\n          variant=\"outlined\"\r\n          InputProps={{\r\n            inputProps: { min: 1, max: this.props.regionRois.length },\r\n          }}\r\n        />\r\n        <br />\r\n        <div style={{ display: \"grid\", gridTemplateColumns: \"1fr auto\" }}>\r\n          <div style={{ marginTop: 10 }}>\r\n            {\" \"}\r\n            <Pagination\r\n              page={this.props.selectionIdx + 1}\r\n              size=\"small\"\r\n              variant=\"outlined\"\r\n              shape=\"rounded\"\r\n              onChange={(e, v) => {\r\n                this.props.selectRegion(v);\r\n              }}\r\n              count={this.props.regionRois.length}\r\n            />\r\n          </div>\r\n\r\n          <Tooltip\r\n            disableInteractive\r\n            title={\r\n              this.props.groupPermissions.canAnnotate\r\n                ? \"Delete selected Structure (Del)\"\r\n                : \"No Permission!\"\r\n            }\r\n          >\r\n            <span>\r\n              <IconButton\r\n                disabled={!this.props.groupPermissions.canAnnotate}\r\n                onClick={() => {\r\n                  this.props.delete();\r\n                }}\r\n                size=\"large\"\r\n              >\r\n                <Delete />\r\n              </IconButton>\r\n            </span>\r\n          </Tooltip>\r\n        </div>\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nConfigForm.propTypes = {\r\n  randSliderKey: PropTypes.number,\r\n  checkJumps: PropTypes.bool,\r\n  toggleJumps: PropTypes.func,\r\n  selectionIdx: PropTypes.number,\r\n  smallerIdx: PropTypes.number,\r\n  biggerIdx: PropTypes.number,\r\n  sortedTreeItems: PropTypes.array,\r\n  selection: PropTypes.object,\r\n  selectRegion: PropTypes.func,\r\n  regionRois: PropTypes.array,\r\n  delete: PropTypes.func,\r\n  groupPermissions: PropTypes.object,\r\n  rangeSliderParams: PropTypes.object,\r\n  deleteSmaller: PropTypes.func,\r\n  deleteBigger: PropTypes.func,\r\n};\r\n\r\nexport default FilterAnnotationsTool;\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport { RegionROI } from \"../../utils/ROI\";\r\nimport RBush from \"rbush\";\r\nimport { updateDrawLayer } from \"../../utils/PolygonUtil\";\r\nimport Backend from \"../../../common/utils/Backend\";\r\n\r\nimport {\r\n  TextField,\r\n  Button,\r\n  Checkbox,\r\n  FormControlLabel,\r\n  Typography,\r\n} from \"@mui/material\";\r\nimport { hasIntersection } from \"../../utils/PolygonUtil\";\r\n\r\nimport Tool from \"./Tool\";\r\nimport Grid from \"@mui/material/Grid\";\r\n\r\nclass GridAnnotationTool extends Tool {\r\n  name = \"GridAnnotationTool\";\r\n  gridSize = 512;\r\n  overlap = 0;\r\n  startPoint = null;\r\n  endPoint = null;\r\n  pointTL = { x: 0, y: 0 };\r\n  pointBR = { x: 0, y: 0 };\r\n  tiles = [];\r\n  rightClick = false;\r\n  n = 9;\r\n  gridOffsetX = 0;\r\n  gridOffsetY = 0;\r\n  progressText = \"make a selection\";\r\n  exportClasses = true;\r\n  baseROIOnly = true;\r\n  currentFileId = null;\r\n  init = false;\r\n\r\n  setLayer(obj) {\r\n    this.ome = obj.ome;\r\n    this.fileId = obj.fileId;\r\n    this.structures = obj.structures;\r\n    this.layer = obj.layer;\r\n    this.roiLayers = obj.roiLayers;\r\n    this.selectedLayer = obj.selectedLayer;\r\n    this.allRoiLayers = obj.allRoiLayers;\r\n    this.project = obj.viewerConfig_project;\r\n    this.projectNoViewConfig = obj.project;\r\n    this.drawLayer = obj.drawLayer;\r\n    this.rendererDict = obj.rendererDict;\r\n    this.gridLayer = this.structures.findIndex((s) => s.label === \"Grid\");\r\n    this.gridLayer = this.gridLayer > 0 ? this.gridLayer : 0;\r\n    window.tileExportProgress = this.printFunction;\r\n    this.disableExport =\r\n      this.structures.findIndex((s) => s.label === \"Grid\") > -1 ? false : true;\r\n    if (this.currentFileId !== this.fileId) {\r\n      this.tiles = [];\r\n      this.currentFileId = this.fileId;\r\n    }\r\n    if (!this.init) {\r\n      let rendererObj = this.rendererDict[\r\n        this.fileId\r\n      ].props.persistentStorage.load(\"gridConfig\" + this.fileId);\r\n      if (rendererObj) {\r\n        this.gridSize = rendererObj.gridSize;\r\n        this.overlap = rendererObj.overlap;\r\n        this.gridOffsetX = rendererObj.gridOffsetX;\r\n        this.gridOffsetY = rendererObj.gridOffsetY;\r\n        this.rendererDict[this.fileId].gridTileCount = rendererObj.tileCount;\r\n      }\r\n      this.init = true;\r\n    }\r\n    if (\r\n      this.rendererDict[this.fileId].gridTileCount !==\r\n      this.roiLayers[this.gridLayer].layer.regionRois.length\r\n    ) {\r\n      this.tiles = [];\r\n    }\r\n  }\r\n\r\n  mouse(params) {\r\n    let { event, p } = params;\r\n    if (event.type === \"mousedown\") {\r\n      if (this.startPoint === null && event.button !== 1) {\r\n        this.startPoint = p;\r\n      }\r\n      if (event.button === 2) {\r\n        this.rightClick = true;\r\n      }\r\n    } else if (event.type === \"mouseup\") {\r\n      if (this.startPoint !== null) {\r\n        this.endPoint = p;\r\n        this.createSelectionArea(this.startPoint, this.endPoint);\r\n        if (this.structures[this.gridLayer].label === \"Grid\") {\r\n          this.treeSelection();\r\n        }\r\n\r\n        this.startPoint = null;\r\n        this.drawLayer.regionRois = [];\r\n        this.rightClick = false;\r\n      }\r\n    } else if (event.type === \"mousemove\" && this.startPoint) {\r\n      this.endPoint = p;\r\n      this.createSelectionArea(this.startPoint, this.endPoint);\r\n      if (this.structures[this.gridLayer].label === \"Grid\") {\r\n        this.treeSelection();\r\n      }\r\n    }\r\n  }\r\n\r\n  //mark tiles\r\n  drawCustomCursor(ctx, mp, f) {\r\n    if (this.tiles.length > 0 && this.gridLayer !== 0) {\r\n      for (let tile of this.tiles) {\r\n        if (tile.roi.comment !== \"export flagged\") {\r\n          let idx = this.tiles.indexOf(tile);\r\n          if (idx >= 0) {\r\n            this.tiles.splice(idx, 1);\r\n          }\r\n        }\r\n      }\r\n      ctx.beginPath();\r\n      ctx.globalAlpha = 1.0;\r\n      ctx.strokeStyle = \"#03FF00\";\r\n      ctx.lineWidth = 3 / f;\r\n      this.tiles.forEach((e) => {\r\n        ctx.rect(e.minX, e.minY, e.maxX - e.minX, e.maxY - e.minY);\r\n      });\r\n\r\n      ctx.stroke();\r\n      ctx.closePath();\r\n    }\r\n  }\r\n\r\n  createSelectionArea = (sP, eP) => {\r\n    if (sP.x <= eP.x) {\r\n      this.pointTL.x = sP.x;\r\n      this.pointBR.x = eP.x;\r\n    } else if (sP.x > eP.x) {\r\n      this.pointTL.x = eP.x;\r\n      this.pointBR.x = sP.x;\r\n    }\r\n\r\n    if (sP.y <= eP.y) {\r\n      this.pointTL.y = sP.y;\r\n      this.pointBR.y = eP.y;\r\n    } else if (sP.y > eP.y) {\r\n      this.pointTL.y = eP.y;\r\n      this.pointBR.y = sP.y;\r\n    }\r\n\r\n    let points = [];\r\n    points.push([this.pointTL.x, this.pointTL.y]);\r\n    points.push([this.pointBR.x, this.pointTL.y]);\r\n    points.push([this.pointBR.x, this.pointBR.y]);\r\n    points.push([this.pointTL.x, this.pointBR.y]);\r\n\r\n    let drawRegion = {\r\n      regions: [points],\r\n      inverted: false,\r\n    };\r\n\r\n    this.drawLayer.regionRois = []; //only one region will be drawn to the draw layer\r\n    updateDrawLayer(this.drawLayer, drawRegion, false, \"#FF0000\", 0, \"zero\");\r\n  };\r\n\r\n  treeSelection = () => {\r\n    let treeItems = this.roiLayers[this.gridLayer].tree.search({\r\n      minX: this.pointTL.x,\r\n      minY: this.pointTL.y,\r\n      maxX: this.pointBR.x,\r\n      maxY: this.pointBR.y,\r\n    });\r\n    for (let treeItem of treeItems) {\r\n      if (treeItem.roi.comment === \"\" && !this.rightClick) {\r\n        treeItem.roi.comment = \"export flagged\";\r\n        this.tiles.push(treeItem);\r\n      } else if (treeItem.roi.comment === \"export flagged\" && this.rightClick) {\r\n        if (this.tiles.includes(treeItem)) {\r\n          treeItem.roi.comment = \"\";\r\n          let idx = this.tiles.indexOf(treeItem);\r\n          if (idx >= 0) {\r\n            this.tiles.splice(idx, 1);\r\n          }\r\n        }\r\n      } else if (\r\n        treeItem.roi.comment === \"export flagged\" &&\r\n        !this.rightClick\r\n      ) {\r\n        if (!this.tiles.includes(treeItem)) {\r\n          this.tiles.push(treeItem);\r\n        }\r\n      }\r\n    }\r\n  };\r\n\r\n  createGrid = () => {\r\n    let baseRois = [];\r\n    if (this.baseROIOnly) {\r\n      baseRois = this.roiLayers[0].layer.regionRois;\r\n      if (baseRois.length === 0) {\r\n        window.showWarningSnackbar(\"No Base ROI set!\");\r\n        return;\r\n      }\r\n    } else {\r\n      let maxX = this.ome.sizeX;\r\n      let maxY = this.ome.sizeY;\r\n      let wholeSceneRoi = new RegionROI({\r\n        regions: [\r\n          [\r\n            [0, 0],\r\n            [maxX, 0],\r\n            [maxX, maxY],\r\n            [0, maxY],\r\n            [0, 0],\r\n          ],\r\n        ],\r\n      });\r\n      baseRois = [wholeSceneRoi];\r\n    }\r\n    this.tiles = [];\r\n    let idx = this.structures.findIndex((s) => s.label === \"Grid\");\r\n    let r = this.rendererDict[this.fileId];\r\n    if (idx === -1) {\r\n      r.props.projectContext.addStructure(\"Grid\", true);\r\n      idx = this.structures.findIndex((s) => s.label === \"Grid\");\r\n    }\r\n    if (idx === -1) {\r\n      this.printFunction(\"TE;Can't create grid\");\r\n      window.showErrorSnackbar(\"Can't create grid\");\r\n      return;\r\n    }\r\n    r.props.setSelectedLayer(idx);\r\n\r\n    // remove for loop if it is sure that we only need one color\r\n    let str = idx;\r\n    // delete all rois\r\n    this.roiLayers[str].layer.regionRois = [];\r\n    this.roiLayers[str].tree = new RBush();\r\n\r\n    for (let baseRoi of baseRois) {\r\n      // make all tiles\r\n      let regions = [];\r\n\r\n      // make x*y tiles\r\n      for (\r\n        let x = baseRoi.bounds.left + this.gridOffsetX;\r\n        x < baseRoi.bounds.right;\r\n        x += this.gridSize - this.overlap\r\n      ) {\r\n        for (\r\n          let y = baseRoi.bounds.top + this.gridOffsetY;\r\n          y < baseRoi.bounds.bottom;\r\n          y += this.gridSize - this.overlap\r\n        ) {\r\n          regions = [];\r\n          // make four corners of tile\r\n          let c_1 = [x, y];\r\n          regions.push(c_1);\r\n          let c_2 = [x + this.gridSize, y];\r\n          regions.push(c_2);\r\n          let c_3 = [x + this.gridSize, y + this.gridSize];\r\n          regions.push(c_3);\r\n          let c_4 = [x, y + this.gridSize];\r\n          regions.push(c_4);\r\n          regions.push(c_1);\r\n\r\n          let roi = new RegionROI({ regions: [regions] });\r\n          if (hasIntersection(roi, baseRoi)) {\r\n            this.roiLayers[str].layer.regionRois.push(roi);\r\n            this.roiLayers[str].tree.insert(roi.treeItem);\r\n          }\r\n        }\r\n      }\r\n    }\r\n\r\n    r.gridTileCount = this.roiLayers[str].layer.regionRois.length;\r\n\r\n    this.saveGridConfig(r.gridTileCount);\r\n  };\r\n\r\n  onClickExport = () => {\r\n    let tiles = [];\r\n    for (let tile in this.tiles) {\r\n      tiles.push({ x: this.tiles[tile].minX, y: this.tiles[tile].minY });\r\n    }\r\n    if (tiles.length < 1) {\r\n      this.printFunction(\"TE;No tiles selected\");\r\n      window.showWarningSnackbar(\"No tiles selected\");\r\n      return;\r\n    }\r\n    if (\r\n      this.structures[this.selectedLayer].label === \"Grid\" ||\r\n      this.structures[this.selectedLayer].label === \"Base ROI\"\r\n    ) {\r\n      this.printFunction(\"TE;Select a structure\");\r\n      window.showWarningSnackbar(\"Select a structure\");\r\n      return;\r\n    }\r\n    this.printFunction(\"TE;Creating Dataset...\");\r\n    let pconfig = this.projectNoViewConfig.files;\r\n    let fileIndex = pconfig.findIndex((s) => s.id === this.fileId);\r\n\r\n    window.showSuccessSnackbar(\r\n      \"Selected structure: \" + this.structures[this.selectedLayer].label\r\n    );\r\n\r\n    let exportObject = {\r\n      size: this.gridSize,\r\n      overlap: this.overlap,\r\n      classes: this.exportClasses,\r\n      baseROIOnly: this.baseROIOnly,\r\n      tiles: tiles,\r\n      selectedStructure: this.structures[this.selectedLayer].label,\r\n      selectedStructureId: this.structures[this.selectedLayer].id,\r\n      fileConfig: pconfig[fileIndex],\r\n      projectId: this.projectNoViewConfig.id,\r\n    };\r\n    Backend.tileExport(exportObject);\r\n  };\r\n\r\n  printFunction = (line) => {\r\n    console.debug(line);\r\n    if (line.includes(\"TE;\")) {\r\n      let newLine = line.split(\";\");\r\n      newLine = newLine[1];\r\n      if (!newLine.includes(\"ERROR\")) {\r\n        this.progressText = newLine;\r\n        if (newLine.includes(\"Dataset created\")) {\r\n          window.showSuccessSnackbar(newLine);\r\n        }\r\n      } else {\r\n        this.progressText = \"Dataset could not be created\";\r\n      }\r\n\r\n      window.forceSidebarUpdate();\r\n    }\r\n  };\r\n\r\n  saveGridConfig = (tileCount) => {\r\n    let saveObject = {\r\n      gridSize: this.gridSize,\r\n      overlap: this.overlap,\r\n      gridOffsetX: this.gridOffsetX,\r\n      gridOffsetY: this.gridOffsetY,\r\n      tileCount: tileCount,\r\n    };\r\n    this.rendererDict[this.fileId].props.persistentStorage.save(\r\n      \"gridConfig\" + this.fileId,\r\n      saveObject\r\n    );\r\n  };\r\n\r\n  moveAnnotations = () => {\r\n    this.rendererDict[this.fileId].moveAnnotations();\r\n  };\r\n\r\n  exit() {}\r\n\r\n  renderConfiguration() {\r\n    return (\r\n      <div>\r\n        <Typography variant=\"h6\">{this.name}:</Typography>\r\n        <ConfigForm\r\n          exportClasses={this.exportClasses}\r\n          baseROIOnly={this.baseROIOnly}\r\n          progressText={this.progressText}\r\n          n={this.n}\r\n          gridSize={this.gridSize}\r\n          onChangeGridSize={(e) => {\r\n            this.n =\r\n              parseInt(e.target.value) > this.gridSize\r\n                ? this.n + 1\r\n                : this.n - 1;\r\n            this.n = this.n > 6 ? this.n : 6;\r\n            this.gridSize = Math.pow(2, this.n);\r\n            this.gridOffsetX = 0;\r\n            this.gridOffsetY = 0;\r\n\r\n            if (this.overlap * 2 > this.gridSize) {\r\n              this.overlap = parseInt(this.gridSize / 2, 10);\r\n            }\r\n\r\n            window.forceSidebarUpdate();\r\n          }}\r\n          overlap={this.overlap}\r\n          onChangeOverlap={(e) => {\r\n            let value =\r\n              parseInt(e.target.value) < 0 ? 0 : parseInt(e.target.value);\r\n            this.overlap = value > this.gridSize ? this.overlap : value;\r\n            window.forceSidebarUpdate();\r\n          }}\r\n          createGrid={this.createGrid}\r\n          onClickExport={this.onClickExport}\r\n          gridOffsetX={this.gridOffsetX}\r\n          gridOffsetY={this.gridOffsetY}\r\n          onChangeGridOffsetX={(e) => {\r\n            let v =\r\n              parseInt(e.target.value) > -this.gridSize &&\r\n              parseInt(e.target.value) < this.gridSize\r\n                ? parseInt(e.target.value)\r\n                : this.gridOffsetX;\r\n            this.gridOffsetX = v;\r\n            window.forceSidebarUpdate();\r\n          }}\r\n          onChangeGridOffsetY={(e) => {\r\n            let v =\r\n              parseInt(e.target.value) > -this.gridSize &&\r\n              parseInt(e.target.value) < this.gridSize\r\n                ? parseInt(e.target.value)\r\n                : this.gridOffsetY;\r\n            this.gridOffsetY = v;\r\n            window.forceSidebarUpdate();\r\n          }}\r\n          onChangeExportClasses={(e) => {\r\n            this.exportClasses = !e;\r\n            window.forceSidebarUpdate();\r\n          }}\r\n          onChangeBaseROIOnly={(e) => {\r\n            this.baseROIOnly = !e;\r\n            window.forceSidebarUpdate();\r\n          }}\r\n          disableExport={this.disableExport}\r\n        />\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nclass ConfigForm extends Component {\r\n  state = { mode: \"copy\" };\r\n  render() {\r\n    let {\r\n      gridSize,\r\n      overlap,\r\n      createGrid,\r\n      onClickExport,\r\n      gridOffsetX,\r\n      gridOffsetY,\r\n      progressText,\r\n      exportClasses,\r\n      baseROIOnly,\r\n      disableExport,\r\n    } = this.props;\r\n    return (\r\n      <div>\r\n        <div>{progressText}</div>\r\n        <div>\r\n          <FormControlLabel\r\n            control={\r\n              <Checkbox\r\n                name=\"CheckboxExportClasses\"\r\n                color=\"primary\"\r\n                checked={exportClasses}\r\n                onChange={() => {\r\n                  this.props.onChangeExportClasses(exportClasses);\r\n                }}\r\n              />\r\n            }\r\n            label=\"Export with Subtypes\"\r\n          />\r\n          <FormControlLabel\r\n            control={\r\n              <Checkbox\r\n                name=\"CheckboxBaseROIOnly\"\r\n                color=\"primary\"\r\n                checked={baseROIOnly}\r\n                onChange={() => {\r\n                  this.props.onChangeBaseROIOnly(baseROIOnly);\r\n                }}\r\n              />\r\n            }\r\n            label=\"Consider Base ROI\"\r\n          />\r\n        </div>\r\n        <Grid container spacing={2}>\r\n          <Grid item key={\"OffsetX\"} xs={6}>\r\n            <TextField\r\n              name=\"grid Offset X\"\r\n              margin=\"normal\"\r\n              type=\"number\"\r\n              size=\"small\"\r\n              label=\"Grid Offset X (px)\"\r\n              placeholder=\"Enter grid size...\"\r\n              value={gridOffsetX}\r\n              onChange={(e) => this.props.onChangeGridOffsetX(e)}\r\n              variant=\"outlined\"\r\n            />\r\n          </Grid>\r\n          <Grid item key={\"OffsetY\"} xs={6}>\r\n            <TextField\r\n              name=\"grid Offset Y\"\r\n              margin=\"normal\"\r\n              type=\"number\"\r\n              size=\"small\"\r\n              label=\"Grid Offset Y (px)\"\r\n              placeholder=\"Enter grid size...\"\r\n              value={gridOffsetY}\r\n              onChange={(e) => this.props.onChangeGridOffsetY(e)}\r\n              variant=\"outlined\"\r\n            />\r\n          </Grid>\r\n          <Grid item key={\"Gridsize\"} xs={6}>\r\n            <TextField\r\n              inputProps={{ step: Math.pow(2, this.n) }}\r\n              name=\"grid size\"\r\n              margin=\"normal\"\r\n              type=\"number\"\r\n              size=\"small\"\r\n              label=\"Grid Size (px)\"\r\n              placeholder=\"Enter grid size...\"\r\n              value={gridSize}\r\n              onChange={(e) => this.props.onChangeGridSize(e)}\r\n              variant=\"outlined\"\r\n            />\r\n          </Grid>\r\n          <Grid item key={\"overlap\"} xs={6}>\r\n            <TextField\r\n              inputProps={{ step: 5 }}\r\n              name=\"overlap\"\r\n              margin=\"normal\"\r\n              type=\"number\"\r\n              size=\"small\"\r\n              label=\"Overlap (px)\"\r\n              placeholder=\"Enter overlap...\"\r\n              value={overlap}\r\n              onChange={(e) => this.props.onChangeOverlap(e)}\r\n              variant=\"outlined\"\r\n            />\r\n          </Grid>\r\n        </Grid>\r\n        <Button\r\n          style={{ marginTop: \"5px\" }}\r\n          fullWidth\r\n          variant=\"contained\"\r\n          color=\"primary\"\r\n          onClick={() => createGrid()}\r\n        >\r\n          Create Grid\r\n        </Button>\r\n        <Button\r\n          style={{ marginTop: \"5px\" }}\r\n          fullWidth\r\n          variant=\"contained\"\r\n          color=\"primary\"\r\n          onClick={() => onClickExport()}\r\n          disabled={disableExport}\r\n        >\r\n          Export Selection\r\n        </Button>\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nConfigForm.propTypes = {\r\n  gridSize: PropTypes.number,\r\n  overlap: PropTypes.number,\r\n  createGrid: PropTypes.func,\r\n  onClickExport: PropTypes.func,\r\n  gridOffsetX: PropTypes.number,\r\n  gridOffsetY: PropTypes.number,\r\n  progressText: PropTypes.string,\r\n  exportClasses: PropTypes.bool,\r\n  baseROIOnly: PropTypes.bool,\r\n  disableExport: PropTypes.bool,\r\n  onChangeExportClasses: PropTypes.func,\r\n  onChangeBaseROIOnly: PropTypes.func,\r\n  onChangeGridOffsetX: PropTypes.func,\r\n  onChangeGridOffsetY: PropTypes.func,\r\n  onChangeGridSize: PropTypes.func,\r\n  onChangeOverlap: PropTypes.func,\r\n};\r\n\r\nexport default GridAnnotationTool;\r\n","import React from \"react\";\r\n\r\nimport { RegionROI } from \"../../utils/ROI\";\r\nimport { isInside } from \"../../utils/PolygonUtil\";\r\nimport RBush from \"rbush\";\r\n\r\nimport {\r\n  Tooltip,\r\n  IconButton,\r\n  Typography,\r\n  TextField,\r\n  Button,\r\n  FormControlLabel,\r\n  Checkbox,\r\n} from \"@mui/material\";\r\n\r\nimport Tool from \"./Tool\";\r\n\r\nconst styles = {\r\n  inputElement: {\r\n    marginBottom: 8,\r\n  },\r\n  h6_small: {\r\n    fontSize: \"18px\",\r\n    marginTop: \"8px\",\r\n  },\r\n  gridButton: {\r\n    marginBottom: \"20px\",\r\n  },\r\n  girdIconText: { fontSize: 18, fontWeight: \"bold\" },\r\n};\r\n\r\nclass GridTool extends Tool {\r\n  name = \"GridTool\";\r\n  tileWidth = 0;\r\n  tileHeight = 0;\r\n  tilesToGenerate = 10;\r\n  showGridPreview = true;\r\n\r\n  setLayer(obj) {\r\n    this.ome = obj.ome;\r\n    if (\r\n      this.ome.physicalSizeX &&\r\n      this.ome.physicalSizeX !== 0 &&\r\n      this.ome.physicalSizeX !== 1\r\n    ) {\r\n      this.sizeUnit = obj.ome.physicalSizeXUnit;\r\n      this.pixelSize = obj.ome.physicalSizeX * 1000000;\r\n    } else {\r\n      this.sizeUnit = \"px\";\r\n      this.pixelSize = 1;\r\n    }\r\n\r\n    if (this.tileWidth === 0 || this.tileHeight === 0) {\r\n      this.tileWidth = parseInt(this.ome.sizeX / 20, 10);\r\n      this.tileHeight = parseInt(this.ome.sizeY / 20, 10);\r\n    }\r\n\r\n    this.structures = obj.structures;\r\n    this.layer = obj.layer;\r\n    this.roiLayers = obj.roiLayers;\r\n    this.selectedLayer = obj.selectedLayer;\r\n    this.allRoiLayers = obj.allRoiLayers;\r\n    this.project = obj.viewerConfig_project;\r\n    this.projectNoViewConfig = obj.project;\r\n    this.isHistoClassification = this.projectNoViewConfig.type.includes(\r\n      \"HistoClassification\"\r\n    );\r\n    this.isHistoPointCounting =\r\n      this.projectNoViewConfig.type.includes(\"HistoPointCounting\");\r\n  }\r\n\r\n  findChilds = (subType) => {\r\n    return this.structures.filter(\r\n      (element) =>\r\n        element.subtypeLevel === subType.subtypeLevel + 1 &&\r\n        element.parentId === subType.id\r\n    );\r\n  };\r\n\r\n  // draw preview grid\r\n  drawCustomCursor(ctx) {\r\n    if (!this.showGridPreview) return;\r\n    const pixelWidth = 1 / ctx.getTransform().a;\r\n    const tileWidth = this.tileWidth;\r\n    const tileHeight = this.tileHeight;\r\n\r\n    if (tileWidth < pixelWidth * 3 || tileHeight < pixelWidth * 3) return;\r\n    ctx.beginPath();\r\n    ctx.strokeStyle = \"rgba(0,0,0,0.5)\";\r\n    ctx.lineWidth = pixelWidth;\r\n    for (let x = 0; x < this.ome.sizeX; x += tileWidth) {\r\n      ctx.moveTo(x, 0);\r\n      ctx.lineTo(x, this.ome.sizeY);\r\n    }\r\n    for (let y = 0; y < this.ome.sizeY; y += tileHeight) {\r\n      ctx.moveTo(0, y);\r\n      ctx.lineTo(this.ome.sizeX, y);\r\n    }\r\n    ctx.stroke();\r\n  }\r\n\r\n  isInsideBaseROI = (regionRoi) => {\r\n    let baseRois = this.roiLayers[0].tree\r\n      .search(regionRoi.treeItem)\r\n      .map((item) => item.roi);\r\n    if (baseRois.length === 0) return false;\r\n    for (const baseRoi of baseRois) {\r\n      if (isInside(regionRoi, baseRoi)) return true;\r\n    }\r\n    return false;\r\n  };\r\n\r\n  // create this.tilesToGenerate random tiles on the grid with the size of this.tileWidth and this.tileHeight\r\n  createRandomTiles = () => {\r\n    const historyItem = [];\r\n    const histId = this.structures[this.selectedLayer].id;\r\n\r\n    const isSubtype =\r\n      this.structures[this.selectedLayer].isSubtype &&\r\n      this.structures[this.selectedLayer].classificationSubtype;\r\n    const structureName = isSubtype\r\n      ? this.structures[this.selectedLayer].label\r\n      : \"\";\r\n    const color = this.structures[this.selectedLayer].color;\r\n\r\n    // Create a list of all possible tile positions\r\n    let positions = [];\r\n    for (let x = 0; x < this.ome.sizeX - this.tileWidth; x += this.tileWidth) {\r\n      for (\r\n        let y = 0;\r\n        y < this.ome.sizeY - this.tileHeight;\r\n        y += this.tileHeight\r\n      ) {\r\n        positions.push([x, y]);\r\n      }\r\n    }\r\n\r\n    // Shuffle the positions array\r\n    for (let i = positions.length - 1; i > 0; i--) {\r\n      const j = Math.floor(Math.random() * (i + 1));\r\n      [positions[i], positions[j]] = [positions[j], positions[i]];\r\n    }\r\n\r\n    // Clear old tiles\r\n    for (let roi of this.layer.regionRois) {\r\n      historyItem.push({ add: false, id: histId, roi: roi });\r\n    }\r\n    this.roiLayers[this.selectedLayer].layer.regionRois = [];\r\n    this.roiLayers[this.selectedLayer].tree = new RBush();\r\n\r\n    let foundTiles = 0;\r\n    // Create new tiles\r\n    for (\r\n      let i = 0;\r\n      foundTiles < this.tilesToGenerate && i < positions.length;\r\n      i++\r\n    ) {\r\n      let regions = [];\r\n      let c_1 = positions[i];\r\n      regions.push(c_1);\r\n      let c_2 = [c_1[0] + this.tileWidth, c_1[1]];\r\n      regions.push(c_2);\r\n      let c_3 = [c_1[0] + this.tileWidth, c_1[1] + this.tileHeight];\r\n      regions.push(c_3);\r\n      let c_4 = [c_1[0], c_1[1] + this.tileHeight];\r\n      regions.push(c_4);\r\n      let roi = new RegionROI({\r\n        regions: regions,\r\n        color1: color,\r\n        subtype: isSubtype,\r\n        name: structureName,\r\n        structureId: this.structures[this.selectedLayer].id,\r\n      });\r\n      let isValidTile = true;\r\n      if (this.selectedLayer > 0) {\r\n        isValidTile = this.isInsideBaseROI(roi);\r\n      }\r\n      if (isValidTile) {\r\n        foundTiles++;\r\n        this.roiLayers[this.selectedLayer].layer.regionRois.push(roi);\r\n        this.roiLayers[this.selectedLayer].tree.insert(roi.treeItem);\r\n        historyItem.push({ add: true, id: histId, roi: roi });\r\n      }\r\n\r\n      if (i === positions.length - 1) {\r\n        window.showWarningSnackbar(\r\n          \"All possible \" + foundTiles + \" tiles set!\"\r\n        );\r\n      }\r\n    }\r\n    window.projectHistory.add(historyItem);\r\n  };\r\n\r\n  createGrid = (x, noGridForChilds, fromFileChange) => {\r\n    const historyItem = [];\r\n    const histId = this.structures[this.selectedLayer].id;\r\n    if (typeof this.projectNoViewConfig === \"undefined\") return;\r\n    // if Tobacco Analysis set BaseRoi over hole scene if not set yet\r\n    if (\r\n      this.projectNoViewConfig.type.includes(\"TobaccoAnalysis\") ||\r\n      this.projectNoViewConfig.type.includes(\"BrainIpsc\")\r\n    ) {\r\n      this.selectedLayer = 0;\r\n      if (this.roiLayers[this.selectedLayer].layer.regionRois.length !== 0) {\r\n        return;\r\n      }\r\n    }\r\n    // if fileChange and grid already exists in this file do not draw new grid\r\n    if (\r\n      fromFileChange &&\r\n      this.roiLayers[this.selectedLayer].layer.regionRois.length !== 0\r\n    ) {\r\n      return;\r\n    }\r\n    // make all tiles\r\n    let regions = [];\r\n    let tileWidth = this.ome.sizeX / x;\r\n    let tileHeight = this.ome.sizeY / x;\r\n\r\n    // make tiles for each structure\r\n    let lenChilds = this.findChilds(this.structures[this.selectedLayer]).length;\r\n    if (noGridForChilds) {\r\n      lenChilds = 0;\r\n    }\r\n\r\n    // check if new gridSize\r\n    let tiles = this.roiLayers[this.selectedLayer].layer.regionRois.length;\r\n    let numberTilesNewGrid = x * x;\r\n    let newGridSize = tiles !== numberTilesNewGrid && tiles !== 0;\r\n\r\n    for (\r\n      let str = this.selectedLayer;\r\n      str <= this.selectedLayer + lenChilds;\r\n      str++\r\n    ) {\r\n      // reset structure if new grid with different grid size\r\n      if (newGridSize) {\r\n        this.resetStructure(str);\r\n      }\r\n\r\n      // delete all rois\r\n      for (let roi of this.roiLayers[str].layer.regionRois) {\r\n        historyItem.push({ add: false, id: histId, roi: roi });\r\n      }\r\n      this.roiLayers[str].layer.regionRois = [];\r\n      this.roiLayers[str].tree = new RBush();\r\n\r\n      // make x*x tiles\r\n      for (let i = 0; i < x * x; i++) {\r\n        regions = [];\r\n        // make four corners of tile\r\n        let c_1 = [(i % x) * tileWidth, Math.floor(i / x) * tileHeight];\r\n        regions.push(c_1);\r\n        let c_2 = [((i % x) + 1) * tileWidth, Math.floor(i / x) * tileHeight];\r\n        regions.push(c_2);\r\n        let c_3 = [\r\n          ((i % x) + 1) * tileWidth,\r\n          (Math.floor(i / x) + 1) * tileHeight,\r\n        ];\r\n        regions.push(c_3);\r\n        let c_4 = [(i % x) * tileWidth, (Math.floor(i / x) + 1) * tileHeight];\r\n        regions.push(c_4);\r\n        let roi = new RegionROI({ regions: [regions] });\r\n        historyItem.push({ add: true, id: histId, roi: roi });\r\n        this.roiLayers[str].layer.regionRois.push(roi);\r\n        this.roiLayers[str].tree.insert(roi.treeItem);\r\n      }\r\n    }\r\n    window.setGridSize(x);\r\n    window.projectHistory.add(historyItem);\r\n    if (this.showGridPreview) {\r\n      this.showGridPreview = false;\r\n      window.forceSidebarUpdate();\r\n    }\r\n  };\r\n\r\n  resetStructure = (str) => {\r\n    // reset properties of structure\r\n    this.structures[str].avgClassFrequency = 0;\r\n    for (const key of Object.keys(this.structures[str].classFrequencies)) {\r\n      this.structures[str].classFrequencies[key] = 0;\r\n    }\r\n  };\r\n\r\n  create1mmGrid = () => {};\r\n\r\n  exit() {}\r\n\r\n  renderConfiguration = () => {\r\n    return (\r\n      <div>\r\n        <Typography variant=\"h6\">{this.name}:</Typography>\r\n        {!this.isHistoClassification && !this.isHistoPointCounting &&(\r\n          <>\r\n            <Typography variant=\"h6\" style={styles.h6_small}>\r\n              Add random grid tiles:\r\n            </Typography>\r\n            <FormControlLabel\r\n              control={\r\n                <Checkbox\r\n                  name=\"CheckboxGridPreview\"\r\n                  checked={this.showGridPreview}\r\n                  onChange={(e) => {\r\n                    this.showGridPreview = e.currentTarget.checked;\r\n                    window.forceSidebarUpdate();\r\n                  }}\r\n                />\r\n              }\r\n              label=\"Show grid preview\"\r\n            />\r\n            <TextField\r\n              label={\"Tile width in \" + this.sizeUnit}\r\n              name=\"Textfield\"\r\n              type=\"number\"\r\n              size=\"small\"\r\n              defaultValue={this.tileWidth * this.pixelSize}\r\n              onChange={(e) => {\r\n                this.tileWidth = Math.round(\r\n                  parseFloat(e.target.value, 10) / this.pixelSize\r\n                );\r\n                window.forceSidebarUpdate();\r\n              }}\r\n              inputProps={{\r\n                step: this.pixelSize,\r\n              }}\r\n              fullWidth\r\n              style={styles.inputElement}\r\n            />\r\n            <TextField\r\n              label={\"Tile height in \" + this.sizeUnit}\r\n              name=\"Textfield\"\r\n              type=\"number\"\r\n              size=\"small\"\r\n              defaultValue={this.tileWidth * this.pixelSize}\r\n              onChange={(e) => {\r\n                this.tileHeight = Math.round(\r\n                  parseFloat(e.target.value, 10) / this.pixelSize\r\n                );\r\n                window.forceSidebarUpdate();\r\n              }}\r\n              inputProps={{\r\n                step: this.pixelSize,\r\n              }}\r\n              fullWidth\r\n              style={styles.inputElement}\r\n            />\r\n            <TextField\r\n              label=\"Tiles to generate\"\r\n              name=\"Textfield\"\r\n              type=\"number\"\r\n              size=\"small\"\r\n              fullWidth\r\n              defaultValue={this.tilesToGenerate}\r\n              onChange={(e) => {\r\n                this.tilesToGenerate = parseInt(e.target.value, 10);\r\n                window.forceSidebarUpdate();\r\n              }}\r\n              style={styles.inputElement}\r\n            />\r\n            <Button\r\n              variant=\"contained\"\r\n              color=\"primary\"\r\n              fullWidth\r\n              onClick={() => this.createRandomTiles()}\r\n            >\r\n              Set {this.tilesToGenerate} random tiles\r\n            </Button>\r\n          </>\r\n        )}\r\n        <Typography variant=\"h6\" style={styles.h6_small}>\r\n          Create grid:\r\n        </Typography>\r\n\r\n        {!this.isHistoClassification && !this.isHistoPointCounting && (\r\n          <div>\r\n            <Tooltip disableInteractive title=\"2x2 grid\">\r\n              <IconButton\r\n                style={styles.gridButton}\r\n                onClick={() => this.createGrid(2, true)}\r\n                size=\"large\"\r\n              >\r\n                <div style={styles.girdIconText}>2x2</div>\r\n              </IconButton>\r\n            </Tooltip>\r\n\r\n            <Tooltip disableInteractive title=\"5x5 grid\">\r\n              <IconButton\r\n                style={styles.gridButton}\r\n                onClick={() => this.createGrid(5, true)}\r\n                size=\"large\"\r\n              >\r\n                <div style={styles.girdIconText}>5x5</div>\r\n              </IconButton>\r\n            </Tooltip>\r\n\r\n            <Tooltip disableInteractive title=\"20x20 grid\">\r\n              <IconButton\r\n                style={styles.gridButton}\r\n                onClick={() => this.createGrid(20, true)}\r\n                size=\"large\"\r\n              >\r\n                <div style={styles.girdIconText}>20x20</div>\r\n              </IconButton>\r\n            </Tooltip>\r\n          </div>\r\n        )}\r\n\r\n        {this.isHistoClassification && (\r\n          <Tooltip disableInteractive title=\"1x1 grid\">\r\n            <IconButton onClick={() => this.createGrid(1)} size=\"large\">\r\n              <div style={styles.girdIconText}>(1x1)</div>\r\n            </IconButton>\r\n          </Tooltip>\r\n        )}\r\n\r\n        {this.isHistoClassification && (\r\n          <Tooltip disableInteractive title=\"2x2 grid\">\r\n            <IconButton onClick={() => this.createGrid(2)} size=\"large\">\r\n              <div style={styles.girdIconText}>1:10 (2x2)</div>\r\n            </IconButton>\r\n          </Tooltip>\r\n        )}\r\n\r\n        {this.isHistoClassification && (\r\n          <Tooltip disableInteractive title=\"5x5 grid\">\r\n            <IconButton onClick={() => this.createGrid(5)} size=\"large\">\r\n              <div style={styles.girdIconText}>1:4 (5x5)</div>\r\n            </IconButton>\r\n          </Tooltip>\r\n        )}\r\n\r\n        {this.isHistoPointCounting && (\r\n          <Tooltip disableInteractive title=\"20 x 20 grid\">\r\n            <IconButton\r\n              style={styles.gridButton}\r\n              onClick={() => this.createGrid(20, true)}\r\n              size=\"large\"\r\n            >\r\n              <div style={styles.girdIconText}>20 x 20</div>\r\n            </IconButton>\r\n          </Tooltip>\r\n        )}\r\n      </div>\r\n    );\r\n  };\r\n}\r\n\r\nexport default GridTool;\r\n","import { findSameLayer } from \"../../utils/PolygonUtil\";\r\nimport { Typography, FormControl, FormLabel, Slider } from \"@mui/material\";\r\nimport Tool from \"./Tool\";\r\nimport React from \"react\";\r\nimport KDBush from \"kdbush\";\r\n\r\nclass HeatmapTool extends Tool {\r\n  toolName = \"Heatmap Tool\";\r\n  noConfig = false;\r\n  removeOverlap = null;\r\n  removeOverlapSame = null;\r\n  tempRemoveOverlap = null;\r\n  tempRemoveOverlapSame = null;\r\n  threshold = 30;\r\n  init = false;\r\n  maxValue = 1;\r\n  searchRadius = 20;\r\n  labels = [];\r\n  prevSelectedLayer = 0;\r\n  rois = [];\r\n  activeGrid = 0;\r\n\r\n  setLayer(obj) {\r\n    this.ome = obj.ome;\r\n    this.isBrightfield = obj.ome.channels[0].type === \"brightfield\";\r\n    this.ctx = obj.ctx; //context\r\n    this.canvas = obj.ctx.canvas; //canvas\r\n    this.canvasWidth = this.canvas.width;\r\n    this.canvasHeight = this.canvas.height;\r\n    this.layer = obj.layer;\r\n    this.roiLayers = obj.roiLayers;\r\n    let layerResults = findSameLayer(obj.structures, obj.selectedLayer);\r\n    this.selectedLayer = layerResults[0];\r\n    this.parentLayer = layerResults[1];\r\n    this.originalSelectedLayer = obj.selectedLayer;\r\n    this.structures = obj.structures;\r\n    this.drawLayer = obj.drawLayer;\r\n\r\n    this.fileId = obj.fileId;\r\n    this.rendererDict = obj.rendererDict;\r\n    this.rendererRef = this.rendererDict[this.fileId];\r\n\r\n    const project = obj.viewerConfig_project;\r\n    if (this.removeOverlap === null) {\r\n      this.removeOverlap = project.projectProperties[\"PreventOverlap\"];\r\n    }\r\n    if (this.tempRemoveOverlap === null) {\r\n      this.tempRemoveOverlap = project.projectProperties[\"PreventOverlap\"];\r\n    }\r\n    if (this.removeOverlapSame === null) {\r\n      this.removeOverlapSame = project.projectProperties[\"PreventOverlapSame\"];\r\n    }\r\n\r\n    // set removeOverlap\r\n    // save current settings (in tempRemoveOverlap) if structure gets changed\r\n    if (obj.selectedLayer === 0) {\r\n      if (!this.noConfig) {\r\n        this.noConfig = true;\r\n        this.tempRemoveOverlap = this.removeOverlap;\r\n        this.tempRemoveOverlapSame = this.removeOverlapSame;\r\n        this.removeOverlap = false;\r\n        this.removeOverlapSame = false;\r\n        window.forceSidebarUpdate();\r\n      }\r\n    } else {\r\n      if (this.noConfig) {\r\n        this.noConfig = false;\r\n        this.removeOverlap = this.tempRemoveOverlap;\r\n        this.removeOverlapSame = this.tempRemoveOverlapSame;\r\n        window.forceSidebarUpdate();\r\n      }\r\n    }\r\n\r\n    this.initTool();\r\n  }\r\n\r\n  initTool = () => {\r\n    if (!this.init) {\r\n      this.visibilityState = [];\r\n      for (let s of this.structures) {\r\n        this.visibilityState.push({\r\n          id: s.id,\r\n          visible: s.visible,\r\n        });\r\n        s.visible = false;\r\n      }\r\n      this.init = true;\r\n    }\r\n  };\r\n\r\n  getPointInCanvas = (point) => {\r\n    let pt = {\r\n      x: Math.round(\r\n        point.center.x * this.ctx.getTransform().a + this.ctx.getTransform().e\r\n      ),\r\n      y: Math.round(\r\n        point.center.y * this.ctx.getTransform().d + this.ctx.getTransform().f\r\n      ),\r\n    };\r\n    return pt;\r\n  };\r\n\r\n  getSubtypeLabels = (idx) => {\r\n    if (!this.labels.includes(this.structures[idx].label)) {\r\n      if (\r\n        this.structures[idx].parentId === 0 ||\r\n        !this.structures[idx].classificationSubtype\r\n      ) {\r\n        this.labels.push(\"\");\r\n      } else {\r\n        this.labels.push(this.structures[idx].label);\r\n      }\r\n    }\r\n    if (this.structures[idx].hasChild) {\r\n      let structs = this.structures.filter(\r\n        (s) => this.structures[idx].id === s.parentId\r\n      );\r\n      for (let s of structs) {\r\n        let index = this.structures.indexOf(s);\r\n        if (index > -1) this.getSubtypeLabels(index);\r\n      }\r\n    }\r\n  };\r\n\r\n  getRois = () => {\r\n    if (this.originalSelectedLayer !== 0) {\r\n      if (this.prevSelectedLayer !== this.originalSelectedLayer) {\r\n        this.rois = [];\r\n        this.prevSelectedLayer = this.originalSelectedLayer;\r\n        this.labels = [];\r\n        let id = this.roiLayers[this.originalSelectedLayer].id;\r\n        let idx = this.structures.findIndex((s) => s.id === id);\r\n        this.getSubtypeLabels(idx);\r\n        let rois = this.roiLayers[this.selectedLayer].layer.regionRois;\r\n        if (rois.length > 0) {\r\n          this.rois = rois.filter((roi) =>\r\n            this.labels.includes(roi.subtypeName)\r\n          );\r\n        }\r\n      }\r\n    }\r\n  };\r\n\r\n  checkRTree = () => {\r\n    this.getRois();\r\n    if (!this.rtree) {\r\n      this.rtree = new KDBush([]);\r\n    }\r\n    if (this.rtree && this.rtree.points.length !== this.rois.length) {\r\n      this.treePoints = [];\r\n      for (let point of this.rois) {\r\n        this.treePoints.push([point.center.x, point.center.y]);\r\n      }\r\n      this.rtree = new KDBush(this.treePoints);\r\n    }\r\n  };\r\n\r\n  worldToCanvas = (x, y) => {\r\n    let pt = {\r\n      x: Math.round(x * this.ctx.getTransform().a + this.ctx.getTransform().e),\r\n      y: Math.round(y * this.ctx.getTransform().d + this.ctx.getTransform().f),\r\n    };\r\n    return pt;\r\n  };\r\n\r\n  yToWorld = (y) => {\r\n    let p1 = this.rendererRef.getPointInCanvas({\r\n      x: 0,\r\n      y: y,\r\n    });\r\n    let p2 = this.rendererRef.getPointInCanvas({ x: 0, y: 0 });\r\n    let p3 = this.rendererRef.getPosition();\r\n    p1.y += p2.y - p3.y / this.rendererRef.getScale();\r\n    return p1.y;\r\n  };\r\n\r\n  xToWorld = (x) => {\r\n    let p1 = this.rendererRef.getPointInCanvas({\r\n      x: x,\r\n      y: 0,\r\n    });\r\n    let p2 = this.rendererRef.getPointInCanvas({ x: 0, y: 0 });\r\n    let p3 = this.rendererRef.getPosition();\r\n    p1.x += p2.x - p3.x / this.rendererRef.getScale();\r\n    return p1.x;\r\n  };\r\n\r\n  worldDistance = (d) => {\r\n    let dStart = 0;\r\n    let dEnd = Math.abs(d);\r\n    dStart = this.xToWorld(dStart);\r\n    dEnd = this.xToWorld(dEnd);\r\n    return parseInt(Math.abs(dEnd - dStart));\r\n  };\r\n\r\n  makeTiles = () => {\r\n    let tileSizeX = 20;\r\n    let tileSizeY = 20;\r\n    let tiles = [];\r\n\r\n    for (let x = 0; x < this.canvasWidth; x = x + tileSizeX) {\r\n      for (let y = 0; y < this.canvasHeight; y = y + tileSizeY) {\r\n        if (\r\n          y > this.canvasHeight - tileSizeY &&\r\n          x > this.canvasWidth - tileSizeX\r\n        ) {\r\n          tiles.push({\r\n            TLx: this.xToWorld(x),\r\n            TLy: this.yToWorld(y),\r\n            BRx: this.xToWorld(this.canvasWidth),\r\n            BRy: this.yToWorld(this.canvasHeight),\r\n          });\r\n        } else if (\r\n          y > this.canvasHeight - tileSizeY &&\r\n          x < this.canvasWidth - tileSizeX\r\n        ) {\r\n          tiles.push({\r\n            TLx: this.xToWorld(x),\r\n            TLy: this.yToWorld(y),\r\n            BRx: this.xToWorld(x + tileSizeX),\r\n            BRy: this.yToWorld(this.canvasHeight),\r\n          });\r\n        } else if (\r\n          y < this.canvasHeight - tileSizeY &&\r\n          x > this.canvasWidth - tileSizeX\r\n        ) {\r\n          tiles.push({\r\n            TLx: this.xToWorld(x),\r\n            TLy: this.yToWorld(y),\r\n            BRx: this.xToWorld(this.canvasWidth),\r\n            BRy: this.yToWorld(y + tileSizeY),\r\n          });\r\n        } else {\r\n          tiles.push({\r\n            TLx: this.xToWorld(x),\r\n            TLy: this.yToWorld(y),\r\n            BRx: this.xToWorld(x + tileSizeX),\r\n            BRy: this.yToWorld(y + tileSizeY),\r\n          });\r\n        }\r\n      }\r\n    }\r\n    this.searchRadius = tileSizeX;\r\n    return tiles;\r\n  };\r\n\r\n  setHeatmapWithGrid = () => {\r\n    let tiles = this.makeTiles();\r\n    let results = [];\r\n    let gridMaxValue = 0;\r\n\r\n    for (let tile of tiles) {\r\n      let result = this.rtree\r\n        .range(tile.TLx, tile.TLy, tile.BRx, tile.BRy)\r\n        .map((id) => this.treePoints[id]);\r\n      if (result.length > gridMaxValue) gridMaxValue = result.length;\r\n      if (result.length > 0) {\r\n        let avgX = 0;\r\n        let avgY = 0;\r\n        for (let point of result) {\r\n          avgX += point[0];\r\n          avgY += point[1];\r\n        }\r\n        avgX = parseInt(avgX / result.length);\r\n        avgY = parseInt(avgY / result.length);\r\n        let center = this.worldToCanvas(avgX, avgY);\r\n        results.push({\r\n          x: center.x,\r\n          y: center.y,\r\n          value: result.length,\r\n          radius: this.threshold, // this.rendererRef.getScale();,\r\n        });\r\n      }\r\n    }\r\n    this.maxValue = gridMaxValue * parseInt(this.threshold / 12);\r\n    this.rendererRef.setHeatmapData(results, gridMaxValue);\r\n    window.forceSidebarUpdate();\r\n  };\r\n\r\n  setHeatmapWithoutGrid = (res) => {\r\n    let data = res;\r\n    let noGridMaxValue = 0;\r\n    let searchRadius = this.threshold; /// this.rendererRef.getScale();\r\n    this.searchRadius = parseInt(searchRadius);\r\n    let results = [];\r\n    for (let i = 0; i < data.length; i++) {\r\n      const result = this.rtree\r\n        .within(data[i][0], data[i][1], searchRadius)\r\n        .map((id) => this.treePoints[id]);\r\n      let center = this.worldToCanvas(data[i][0], data[i][1]);\r\n\r\n      results.push({\r\n        x: center.x,\r\n        y: center.y,\r\n        value: result.length,\r\n        radius: this.threshold * this.rendererRef.getScale(),\r\n      });\r\n      if (result.length > noGridMaxValue) noGridMaxValue = result.length;\r\n    }\r\n    this.maxValue = noGridMaxValue;\r\n    this.rendererRef.setHeatmapData(results, noGridMaxValue);\r\n    window.forceSidebarUpdate();\r\n  };\r\n\r\n  checkVisibleObjects = () => {\r\n    this.checkRTree();\r\n    let TLx = this.xToWorld(0);\r\n    let TLy = this.yToWorld(0);\r\n    let BRx = this.xToWorld(this.canvasWidth);\r\n    let BRy = this.yToWorld(this.canvasHeight);\r\n    let result = this.rtree\r\n      .range(TLx, TLy, BRx, BRy)\r\n      .map((id) => this.treePoints[id]);\r\n    return result;\r\n  };\r\n\r\n  drawCustomCursor(ctx, mousePosition) {\r\n    this.mousePosition = mousePosition;\r\n    if (ctx) {\r\n      let result = this.checkVisibleObjects();\r\n      let visiblePoints = 2500;\r\n      if (result.length > 0 && result.length < visiblePoints) {\r\n        this.activeGrid = 0;\r\n        this.setHeatmapWithoutGrid(result);\r\n      } else if (result.length > 0 && result.length > visiblePoints) {\r\n        this.activeGrid = 1;\r\n        this.setHeatmapWithGrid();\r\n      } else if (result.length === 0) {\r\n        this.rendererRef.setHeatmapData([], 100);\r\n      }\r\n    }\r\n  }\r\n\r\n  exit() {\r\n    for (let s of this.visibilityState) {\r\n      let i = this.structures.findIndex((item) => item.id === s.id);\r\n      this.structures[i].visible = s.visible;\r\n    }\r\n    this.init = false;\r\n    this.rois = [];\r\n    this.prevSelectedLayer = 0;\r\n  }\r\n\r\n  renderConfiguration() {\r\n    const pxlValue =\r\n      this.activeGrid === 0\r\n        ? this.searchRadius\r\n        : this.worldDistance(this.threshold);\r\n    return (\r\n      <div style={{ margin: \"12px\" }}>\r\n        {/* canvas for debugging */}\r\n        {/* <canvas id=\"outputCanvas\"></canvas> */}\r\n        <Typography variant=\"h6\">{this.toolName}:</Typography>\r\n        <div\r\n          style={{\r\n            height: \"20px\",\r\n            width: \"50%\",\r\n            float: \"right\",\r\n            textAlignLast: \"end\",\r\n          }}\r\n        >\r\n          {this.maxValue}\r\n        </div>\r\n        <div\r\n          style={{\r\n            height: \"20px\",\r\n            width: \"50%\",\r\n          }}\r\n        >\r\n          1\r\n        </div>\r\n        <div\r\n          style={{\r\n            height: \"20px\",\r\n            backgroundImage:\r\n              \"linear-gradient(to right,#0000ff, #00ff00, #ffff00, #ff0000)\",\r\n          }}\r\n        ></div>\r\n        <div style={{ textAlign: \"center\", marginBottom: \"10px\" }}>\r\n          Objects within {pxlValue}px\r\n        </div>\r\n        <FormControl component=\"fieldset\" fullWidth>\r\n          <FormLabel component=\"legend\">\r\n            {\"Color Distribution Radius: \" + pxlValue + \"px\"}\r\n          </FormLabel>\r\n          <Slider\r\n            min={1}\r\n            max={100}\r\n            value={this.threshold}\r\n            onChange={(e, v) => {\r\n              this.threshold = v;\r\n              window.forceSidebarUpdate();\r\n            }}\r\n            onChangeCommitted={() => {\r\n              this.updateDrawing();\r\n            }}\r\n          />\r\n        </FormControl>\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nexport default HeatmapTool;\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport {\r\n  Grid,\r\n  Button,\r\n  FormControl,\r\n  TextField,\r\n  FormHelperText,\r\n  Select,\r\n  InputLabel,\r\n  MenuItem,\r\n  Checkbox,\r\n  FormControlLabel,\r\n  Slider,\r\n  Tooltip,\r\n  LinearProgress,\r\n  Typography,\r\n  IconButton,\r\n} from \"@mui/material\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\nimport Backend from \"../../../common/utils/Backend\";\r\nimport { withSpinloader } from \"../../../common/components/Spinloader\";\r\nimport { RegionROI, createRoisFromAnno } from \"../../utils/ROI\";\r\nimport MuiAccordion from \"@mui/material/Accordion\";\r\nimport MuiAccordionSummary from \"@mui/material/AccordionSummary\";\r\nimport MuiAccordionDetails from \"@mui/material/AccordionDetails\";\r\nimport ExpandMoreIcon from \"@mui/icons-material/ExpandMore\";\r\nimport {\r\n  generateParentList,\r\n  getParentIndexLayer,\r\n} from \"../../utils/StructuresUtils\";\r\nimport SettingsBackupRestoreIcon from \"@mui/icons-material/SettingsBackupRestore\";\r\n\r\nimport Tool from \"./Tool\";\r\n\r\nconst Accordion = withStyles({\r\n  root: {\r\n    border: \"1px solid rgba(0, 0, 0, .125)\",\r\n    boxShadow: \"none\",\r\n    \"&:not(:last-child)\": {\r\n      borderBottom: 0,\r\n    },\r\n    \"&:before\": {\r\n      display: \"none\",\r\n    },\r\n    \"&$expanded\": {\r\n      margin: \"auto\",\r\n    },\r\n  },\r\n  expanded: {},\r\n})(MuiAccordion);\r\n\r\nconst AccordionSummary = withStyles({\r\n  root: {\r\n    overflow: \"hidden\",\r\n    backgroundColor: \"rgba(0, 0, 0, .03)\",\r\n    borderBottom: \"1px solid rgba(0, 0, 0, .125)\",\r\n    minHeight: 56,\r\n    \"&$expanded\": {\r\n      minHeight: 56,\r\n    },\r\n  },\r\n  content: {\r\n    \"&$expanded\": {\r\n      margin: \"12px 0\",\r\n    },\r\n  },\r\n  expanded: {},\r\n})(MuiAccordionSummary);\r\n\r\nconst AccordionDetails = withStyles((theme) => ({\r\n  root: {\r\n    padding: theme.spacing(2),\r\n  },\r\n}))(MuiAccordionDetails);\r\n\r\n/**\r\n * Counts number of decimals of a number\r\n * @param {Number} x\r\n */\r\nfunction countDecimals(x) {\r\n  if (Math.floor(x.valueOf()) === x.valueOf()) return 0;\r\n  return x.toString().split(\".\")[1].length || 0;\r\n}\r\n\r\nconst styles = {\r\n  input: {\r\n    width: 55,\r\n  },\r\n};\r\n\r\nclass InstantAnalysisTool extends Tool {\r\n  constructor(toolConfig, viewer) {\r\n    super();\r\n    this.toolConfig = toolConfig;\r\n    this.name = toolConfig.tooltip;\r\n    this.state = {\r\n      preview: toolConfig.preview,\r\n      prevW: 512,\r\n      prevH: 512,\r\n      showDownloadProgress: false,\r\n      modelDownloadProgress: false,\r\n    };\r\n    this.viewer = viewer;\r\n  }\r\n\r\n  /**\r\n   * Update File Specific information\r\n   * @param {Object} layer\r\n   * @param {Object} ome\r\n   * @param {String} fileId\r\n   * @param {String} projectId\r\n   * @param {Object[]} roiLayers\r\n   */\r\n  setLayer(obj) {\r\n    this.id = obj.fileId;\r\n    this.layer = obj.layer;\r\n    this.ome = obj.ome;\r\n    this.pixelLengthX = obj.ome.physicalSizeX * Math.pow(10, 6); //pixel x length in µm\r\n    this.pixelLengthY = obj.ome.physicalSizeY * Math.pow(10, 6);\r\n    this.pixelArea = this.pixelLengthX * this.pixelLengthY; //pixel area in µm\r\n    this.isBrightfield = obj.ome.channels[0].type === \"brightfield\";\r\n    this.projectId = obj.projectId;\r\n    this.roiLayers = obj.roiLayers;\r\n    this.structures = obj.structures;\r\n    this.selectedLayer = obj.selectedLayer;\r\n    this.updateProject = obj.updateProject;\r\n    this.updateFileClasses = obj.updateFileClasses;\r\n    this.ctx = obj.ctx;\r\n    this.histogramConfig = obj.histogramConfig;\r\n\r\n    if (obj.structures[obj.selectedLayer]) {\r\n      this.toolLayerConfig = obj.structures[obj.selectedLayer].tools.find(\r\n        (c) => c.name === this.toolConfig.name\r\n      );\r\n    }\r\n\r\n    if (typeof this.toolLayerConfig !== \"undefined\") {\r\n      Object.assign(this.state, this.toolLayerConfig.parameters);\r\n    }\r\n  }\r\n\r\n  /**\r\n   * Update Preview Area (e.g. on move)\r\n   * @param {Number} x\r\n   * @param {Number} y\r\n   * @param {Number} w\r\n   * @param {Number} h\r\n   */\r\n  setPreviewRect(x, y) {\r\n    this.previewRect = {\r\n      x: x - this.state.prevW / 2,\r\n      y: y - this.state.prevH / 2,\r\n      w: this.state.prevW,\r\n      h: this.state.prevH,\r\n    };\r\n  }\r\n\r\n  setPreviewSize(w, h) {\r\n    let newState = {\r\n      prevW: w,\r\n      prevH: h,\r\n    };\r\n    Object.assign(this.state, newState);\r\n  }\r\n\r\n  updateTrainingProgress = (line) => {\r\n    if (line.includes(\"Downloading model from:\")) {\r\n      this.state.modelDownloadProgress = 0;\r\n      this.state.showDownloadProgress = true;\r\n    } else if (line.includes(\"[DownloadProgress]\")) {\r\n      // Extract progress number\r\n      this.state.modelDownloadProgress = line\r\n        .split(\"[DownloadProgress]\")[1]\r\n        .split(\"%\")[0];\r\n    } else if (line.includes(\"Download complete\")) {\r\n      this.state.showDownloadProgress = false;\r\n    }\r\n  };\r\n\r\n  mouse() {}\r\n\r\n  /**\r\n   * Calculates the parent structure, grandparent if selection is subtype\r\n   * @param {number} selectedLayer\r\n   * @param {object} structures\r\n   */\r\n  findOuterParentIdx(selectedLayer, structures) {\r\n    let selectedStructure = structures[selectedLayer];\r\n    while (\r\n      selectedStructure.classificationSubtype &&\r\n      selectedStructure.parentId !== 0\r\n    ) {\r\n      selectedStructure = this.findParentStructure(\r\n        structures,\r\n        selectedStructure\r\n      );\r\n    }\r\n    return structures.findIndex((s) => s.id === selectedStructure.parentId);\r\n  }\r\n\r\n  findParentStructure(structures, selectedStructure) {\r\n    return structures.find((s) => s.id === selectedStructure.parentId);\r\n  }\r\n\r\n  /**\r\n   * Calculates Instant analysis on a smaller preview area\r\n   * @param {Component} component\r\n   */\r\n  calcPreview(component) {\r\n    // add viewer values to parameter to use in tool iams\r\n    component.props.state.z = this.viewer.state.z; //self.config.Parameters[\"z\"]\r\n    component.props.state.t = this.viewer.state.t; //self.config.Parameters[\"t\"]\r\n    component.props.state.selectedLayer = component.props.selectedLayer; //self.config.Parameters[\"selectedLayer\"]\r\n\r\n    let fileClassification =\r\n      this.viewer.state.viewerConfig.project.projectStringProperties[\r\n        \"ViewerType\"\r\n      ] == \"Gallery\";\r\n\r\n    // Check for presence of BaseROI\r\n    if (\r\n      component.props.selectedLayer > 0 &&\r\n      this.roiLayers[0].layer.regionRois.length === 0 &&\r\n      !fileClassification\r\n    ) {\r\n      window.showWarningSnackbar(\"No Base ROI set!\");\r\n      return;\r\n    }\r\n\r\n    // warning if channel is not selected and also aborting analysis\r\n    if (\r\n      component.props.state.toolParams &&\r\n      component.props.state.channel &&\r\n      component.props.state.channel < 0\r\n    ) {\r\n      window.showWarningSnackbar(\"No channel selected!\");\r\n      return;\r\n    }\r\n\r\n    // Check for missing preview rectangle\r\n    if (typeof this.previewRect === \"undefined\" && !fileClassification) return;\r\n\r\n    // get outerParentIndex (for classification models use other function)\r\n    let formDataAICockpit = this.viewer.state.formDataAICockpit;\r\n    let selLayerStructureId =\r\n      component.props.structures[component.props.selectedLayer].id;\r\n\r\n    let modelName = null;\r\n    let modelType = null;\r\n    if (formDataAICockpit !== null) {\r\n      modelName = formDataAICockpit[selLayerStructureId]\r\n        ? formDataAICockpit[selLayerStructureId].selectedModel\r\n        : null;\r\n\r\n      modelType =\r\n        modelName && formDataAICockpit[selLayerStructureId].models[modelName]\r\n          ? formDataAICockpit[selLayerStructureId].models[modelName].modelType\r\n          : null;\r\n    }\r\n\r\n    const outerParentidx =\r\n      modelType === \"classification\"\r\n        ? getParentIndexLayer(\r\n            component.props.structures[component.props.selectedLayer],\r\n            component.props.structures\r\n          )\r\n        : this.findOuterParentIdx(\r\n            component.props.selectedLayer,\r\n            component.props.structures\r\n          );\r\n\r\n    let stateObject = this.state;\r\n    stateObject[\"parentIdx\"] = outerParentidx;\r\n\r\n    let start = new Date().getTime();\r\n\r\n    component.props.spinloader.showWithTimeout(1, 10);\r\n\r\n    let layersToSave = [0];\r\n    if (outerParentidx > 0) {\r\n      layersToSave.push(outerParentidx);\r\n    }\r\n\r\n    if (this.state.depending_structure) {\r\n      if (!layersToSave.includes(this.state.depending_structure))\r\n        layersToSave.push(this.state.depending_structure);\r\n    }\r\n    if (this.state.depending_channel) {\r\n      layersToSave.push(this.state.depending_channel);\r\n    } else {\r\n      for (let parameter of this.toolConfig.parameters) {\r\n        if (parameter.name === \"required_structures\") {\r\n          let required_structures = parameter.ui.default;\r\n          if (Array.isArray(required_structures)) {\r\n            for (let required_struture of required_structures) {\r\n              if (!layersToSave.includes(required_struture)) {\r\n                layersToSave.push(required_struture);\r\n              }\r\n            }\r\n          } else {\r\n            layersToSave.push(parameter.ui.default);\r\n          }\r\n          break;\r\n        }\r\n      }\r\n    }\r\n    if (this.state.depending_structure === -1) {\r\n      layersToSave = \"all\";\r\n    }\r\n\r\n    let previewRect = {};\r\n    if (!fileClassification) {\r\n      previewRect = {\r\n        x: Math.floor(this.previewRect.x),\r\n        y: Math.floor(this.previewRect.y),\r\n        w: Math.floor(this.previewRect.w),\r\n        h: Math.floor(this.previewRect.h),\r\n      };\r\n    }\r\n\r\n    // Check if the preview rectangle is inside a valid parent region.\r\n    if (outerParentidx > 0 && !fileClassification) {\r\n      let treeItems = this.roiLayers[outerParentidx].tree.search({\r\n        minX: previewRect.x,\r\n        minY: previewRect.y,\r\n        maxX: previewRect.x + previewRect.w,\r\n        maxY: previewRect.y + previewRect.h,\r\n      });\r\n      if (treeItems.length === 0) {\r\n        window.showWarningSnackbar(\r\n          \"No parent structures overlapping preview rectangle!\"\r\n        );\r\n        component.props.spinloader.hide();\r\n        return;\r\n      }\r\n    }\r\n\r\n    // In case of multilayered image, set z-Layer\r\n    if (!fileClassification && this.viewer.rendererdict[this.id].state.z) {\r\n      stateObject.z = this.viewer.rendererdict[this.id].state.z;\r\n    }\r\n\r\n    // In case of video, set time\r\n    if (!fileClassification && this.viewer.rendererdict[this.id].state.t) {\r\n      stateObject.t = this.viewer.rendererdict[this.id].state.t;\r\n    }\r\n\r\n    // Data sent to Backend request\r\n    const data = {\r\n      name: this.toolConfig.name,\r\n      projectId: this.projectId,\r\n      fileIds: [this.id],\r\n      parameters: stateObject,\r\n      preview: true,\r\n      rect: previewRect,\r\n      project: this.viewer.createProjectModel(layersToSave, previewRect),\r\n    };\r\n\r\n    // ALMs\r\n    if (this.toolConfig.name.includes(\"alm_\")) {\r\n      Backend.activeLearningSignalR(\r\n        data,\r\n        () => {\r\n          component.props.spinloader.hide();\r\n        },\r\n        (error) => {\r\n          component.props.spinloader.hide();\r\n          window.openErrorDialog(error);\r\n        }\r\n      );\r\n    }\r\n\r\n    // IAMS\r\n    else {\r\n      const selectedLayer = this.selectedLayer;\r\n\r\n      // Get the layer where the annotations are saved\r\n      const parentlist = generateParentList(this.structures);\r\n\r\n      // Send Backend request\r\n      Backend.instantAnalysisSignalR(\r\n        data,\r\n        component.props.spinloader,\r\n        (project) => {\r\n          // this.updateProject(project);\r\n          // update last used tool for the structure\r\n          this.structures[this.selectedLayer].selectedToolName =\r\n            this.toolConfig.name;\r\n\r\n          // Iterate through all annotations of the currently open file/scene\r\n          for (let anno of project.files.find((c) => c.id === this.id)\r\n            .annotations) {\r\n            // Get index of currently selected structure/subtype\r\n            // NOTE: .id in annotations is named wrong. It's supposed to be names .index >:(\r\n            const layerIndex = anno.id === -1 ? selectedLayer : anno.id;\r\n\r\n            // Skip Base ROI\r\n            if (layerIndex === 0) {\r\n              continue;\r\n            }\r\n\r\n            // Get id of structure, where the current annotations are saved\r\n            const annotationSaveStructureId =\r\n              parentlist[layerIndex][parentlist[layerIndex].length - 1].id;\r\n\r\n            // Get index of said structure in all structures\r\n            const annotationSaveStructureIndex = this.roiLayers.findIndex(\r\n              (roiLayer) => roiLayer.id === annotationSaveStructureId\r\n            );\r\n\r\n            if (anno.geoJSON === null) anno.geoJSON = { coordinates: [] };\r\n            let newRois = createRoisFromAnno(anno);\r\n\r\n            // Find and remove all items currently present inside the preview area.\r\n            if (\r\n              \"x\" in previewRect &&\r\n              // Check if there are any old annotations present.\r\n              this.roiLayers[annotationSaveStructureIndex].tree.collides({\r\n                minX: previewRect.x,\r\n                minY: previewRect.y,\r\n                maxX: previewRect.x + previewRect.w,\r\n                maxY: previewRect.y + previewRect.h,\r\n              })\r\n            ) {\r\n              // Then find all items in the area.\r\n              let itemsToRemove = this.roiLayers[\r\n                annotationSaveStructureIndex\r\n              ].tree.search({\r\n                minX: previewRect.x,\r\n                minY: previewRect.y,\r\n                maxX: previewRect.x + previewRect.w,\r\n                maxY: previewRect.y + previewRect.h,\r\n              });\r\n              // Then remove them.\r\n              for (let itemToRemove of itemsToRemove) {\r\n                this.roiLayers[annotationSaveStructureIndex].tree.remove(\r\n                  itemToRemove\r\n                );\r\n              }\r\n            }\r\n\r\n            // Add new ROIs to selected structure\r\n            for (let roi of newRois) {\r\n              this.roiLayers[layerIndex].tree.insert(roi.treeItem);\r\n            }\r\n\r\n            // Diplay the newly generated ROIs in the layers\r\n            this.roiLayers[layerIndex].layer.regionRois = this.roiLayers[\r\n              layerIndex\r\n            ].tree\r\n              .all()\r\n              .map((item) => item.roi);\r\n\r\n            // Update the saved layer\r\n            this.roiLayers[annotationSaveStructureIndex].layer.regionRois =\r\n              this.roiLayers[annotationSaveStructureIndex].tree\r\n                .all()\r\n                .map((item) => item.roi);\r\n          }\r\n\r\n          // if classification model to classify full files --> assign classIds\r\n          if (fileClassification) {\r\n            this.updateFileClasses(project);\r\n          }\r\n\r\n          console.debug(\r\n            `IAM Frontend Execution time calcPreview: ${\r\n              new Date().getTime() - start\r\n            } ms`\r\n          );\r\n          component.props.spinloader.hide();\r\n        },\r\n        (error) => {\r\n          component.props.spinloader.hide();\r\n          window.openErrorDialog(error);\r\n        }\r\n      );\r\n    }\r\n  }\r\n\r\n  /**\r\n   * Calculates Instant analysis on the full image\r\n   * @param {Component} component\r\n   * @param {Boolean} applyToAll apply on all images of project?\r\n   */\r\n  calcFull(component, applyToAll = false) {\r\n    component.props.state.z = this.viewer.state.z; //self.config.Parameters[\"z\"]\r\n    component.props.state.t = this.viewer.state.t; //self.config.Parameters[\"t\"]\r\n    const outerParentidx = this.findOuterParentIdx(\r\n      component.props.selectedLayer,\r\n      component.props.structures\r\n    );\r\n    let stateObject = this.state;\r\n    stateObject[\"parentIdx\"] = outerParentidx;\r\n    let layersToSave = [0, outerParentidx];\r\n    if (this.state.depending_channel) {\r\n      layersToSave.push(this.state.depending_channel);\r\n    }\r\n    if (this.state.depending_structure) {\r\n      layersToSave.push(this.state.depending_structure);\r\n    }\r\n    if (this.state.depending_structure === -1) {\r\n      layersToSave = \"all\";\r\n    }\r\n    var start = new Date().getTime();\r\n    component.props.spinloader.show();\r\n    const project = this.viewer.createProjectModel(layersToSave);\r\n    let fileIds = applyToAll\r\n      ? project.files\r\n          .filter((file) => !file.excludeScene)\r\n          .map((file) => file.id)\r\n      : [this.id];\r\n\r\n    let scenesLeft = fileIds.length;\r\n    component.props.spinloader.showWithTimeout(scenesLeft);\r\n\r\n    let data = {\r\n      name: this.toolConfig.name,\r\n      projectId: this.projectId,\r\n      fileIds: fileIds,\r\n      parameters: this.state,\r\n      preview: false,\r\n      rect: null,\r\n      project: project,\r\n    };\r\n\r\n    if (this.toolConfig.name.includes(\"alm_\")) {\r\n      // save project before classify images\r\n      const projectModel = this.viewer.createProjectModel(\"all\");\r\n      Backend.saveProject(projectModel, () => {});\r\n      Backend.activeLearningSignalR(\r\n        data,\r\n        (alModel) => {\r\n          component.props.spinloader.hide();\r\n          this.viewer.getSelectedObjects(alModel);\r\n        },\r\n        (error) => {\r\n          component.props.spinloader.hide();\r\n          window.openErrorDialog(error);\r\n        }\r\n      );\r\n    } else {\r\n      let selectedLayer = this.selectedLayer;\r\n      let resultProject = null;\r\n      let callbackFunction = (project, fileId) => {\r\n        scenesLeft -= 1;\r\n        if (resultProject === null) {\r\n          resultProject = project;\r\n        } else {\r\n          resultProject.files = resultProject.files.map((file) => {\r\n            if (file.id === fileId) {\r\n              return project.files.find((pFile) => pFile.id === fileId);\r\n            } else return file;\r\n          });\r\n        }\r\n        this.updateProject(project, fileId);\r\n\r\n        if (fileId === this.id) {\r\n          // load annotation layers\r\n          for (let anno of project.files.find((c) => c.id === this.id)\r\n            .annotations) {\r\n            let layerIndex = anno.id === -1 ? selectedLayer : anno.id;\r\n            if (anno.geoJSON === null) continue;\r\n            anno.geoJSON.coordinates = anno.geoJSON.coordinates.filter(\r\n              (coord) => coord.length > 0\r\n            );\r\n            if (anno.geoJSON.coordinates.length > 0) {\r\n              if (\r\n                anno.geoJSON.structureId &&\r\n                anno.geoJSON.structureId.length > 0\r\n              ) {\r\n                this.roiLayers[layerIndex].layer.regionRois =\r\n                  anno.geoJSON.coordinates.map((c, idx) => {\r\n                    return new RegionROI({\r\n                      regions: typeof c[0][0][0] === \"number\" ? c : c[0],\r\n                      tileName:\r\n                        component.props.toolConfig.name === \"iam_tiler\"\r\n                          ? this.calcTileName(component, idx)\r\n                          : null,\r\n                      structureId: anno.geoJSON.structureId[idx][0],\r\n                      color1: anno.geoJSON.color1[idx][0],\r\n                      name: anno.geoJSON.name[idx][0],\r\n                      subtype: anno.geoJSON.subtype[idx][0],\r\n                    });\r\n                  });\r\n              } else {\r\n                this.roiLayers[layerIndex].layer.regionRois =\r\n                  anno.geoJSON.coordinates.map((c, idx) => {\r\n                    return new RegionROI({\r\n                      regions: typeof c[0][0][0] === \"number\" ? c : c[0],\r\n                      tileName:\r\n                        component.props.toolConfig.name === \"iam_tiler\"\r\n                          ? this.calcTileName(component, idx)\r\n                          : null,\r\n                      structureId: this.structures[selectedLayer].id,\r\n                    });\r\n                  });\r\n              }\r\n\r\n              this.roiLayers[layerIndex].tree.clear();\r\n              for (let roi of this.roiLayers[layerIndex].layer.regionRois) {\r\n                this.roiLayers[layerIndex].tree.insert(roi.treeItem);\r\n              }\r\n              // }\r\n            }\r\n          }\r\n        }\r\n\r\n        console.debug(\r\n          `IAM Frontend Execution time calcFull: ${\r\n            new Date().getTime() - start\r\n          } ms`\r\n        );\r\n        component.props.spinloader.resetTimer(scenesLeft, 5);\r\n        if (scenesLeft > 0) {\r\n          this.runAnalysis(\r\n            data,\r\n            callbackFunction,\r\n            fileIds,\r\n            fileIds.length - scenesLeft,\r\n            component\r\n          );\r\n        } else {\r\n          component.props.spinloader.hide();\r\n        }\r\n      };\r\n      this.runAnalysis(data, callbackFunction, fileIds, 0, component);\r\n    }\r\n  }\r\n\r\n  runAnalysis = (data, callbackFunction, fileIds, idx, component) => {\r\n    if (fileIds.length > 1) {\r\n      component.props.spinloader.showWithProgress({\r\n        message: `Running Analysis ${idx + 1} of ${fileIds.length}`,\r\n        progress: (((idx + 1) / fileIds.length) * 100).toFixed(0),\r\n      });\r\n    } else {\r\n      component.props.spinloader.show();\r\n    }\r\n    const fileId = fileIds[idx];\r\n    data.fileIds = [fileId];\r\n    Backend.instantAnalysisSignalR(\r\n      data,\r\n      component.props.spinloader,\r\n      (project) => callbackFunction(project, fileId),\r\n      (error) => {\r\n        if (fileId === this.id) {\r\n          component.props.spinloader.hide();\r\n          window.openErrorDialog(error);\r\n        } else {\r\n          window.showWarningSnackbar(\r\n            \"Apply Process failed for file: \" +\r\n              data.project.files.find((file) => file.id === fileId).fileName\r\n          );\r\n        }\r\n      }\r\n    );\r\n  };\r\n\r\n  calcTileName = (component, idx) => {\r\n    let letters = [\r\n      \"A\",\r\n      \"B\",\r\n      \"C\",\r\n      \"D\",\r\n      \"E\",\r\n      \"F\",\r\n      \"G\",\r\n      \"H\",\r\n      \"I\",\r\n      \"J\",\r\n      \"K\",\r\n      \"L\",\r\n      \"M\",\r\n      \"N\",\r\n      \"O\",\r\n      \"P\",\r\n      \"Q\",\r\n      \"R\",\r\n      \"S\",\r\n      \"T\",\r\n      \"U\",\r\n      \"V\",\r\n      \"W\",\r\n      \"X\",\r\n      \"Y\",\r\n      \"Z\",\r\n    ];\r\n\r\n    let numberRows = Math.ceil(\r\n      component.props.ome.sizeY / component.props.state.size\r\n    );\r\n    let numberCellsAlphabet = 26 * numberRows;\r\n\r\n    let firstLetter = \"\";\r\n    if (Math.floor(idx / numberCellsAlphabet) > 0) {\r\n      firstLetter = letters[Math.floor(idx / numberCellsAlphabet) - 1];\r\n    }\r\n\r\n    let secondLetter = \"\";\r\n    idx = idx - Math.floor(idx / numberCellsAlphabet) * numberCellsAlphabet;\r\n    let lettersIdx = Math.floor(idx / numberRows);\r\n    secondLetter = letters[lettersIdx];\r\n    let numberTile = idx - lettersIdx * numberRows;\r\n\r\n    return firstLetter + secondLetter + String(numberTile + 1);\r\n  };\r\n\r\n  /**\r\n   * Draw a custom cursor\r\n   * ctx: canvas context, e.g. circle, rectangle, ...\r\n   */\r\n  drawCustomCursor(ctx, mousePosition, scale, canvas, center) {\r\n    const sizeSliderParams = [\r\n      \"area_min\",\r\n      \"min_area\",\r\n      \"area_max\",\r\n      \"max_area\",\r\n      \"cell_radius\",\r\n      \"min_area_cells\",\r\n      \"nuclei_cell_radius_cell_488\",\r\n      \"min_area_647\",\r\n      \"area_range_555\",\r\n      \"lumen_size\",\r\n    ];\r\n    if (this.state.formControlInUse) {\r\n      if (\r\n        sizeSliderParams.includes(this.state.formControlInUse) ||\r\n        this.state.formControlInUse.includes(\"area_min\")\r\n      ) {\r\n        let area = this.state[this.state.formControlInUse] / this.pixelArea;\r\n        let radius = Math.abs(Math.sqrt(area / Math.PI));\r\n        ctx.beginPath();\r\n        ctx.globalAlpha = 1.0;\r\n        ctx.strokeStyle = this.isBrightfield ? \"#000000\" : \"#ffffff\";\r\n        ctx.arc(center.x, center.y, radius, 0, 2 * Math.PI);\r\n        ctx.stroke();\r\n        ctx.closePath();\r\n      } else if (this.state.formControlInUse.includes(\"area_range\")) {\r\n        for (let range_value of this.state[this.state.formControlInUse]) {\r\n          let area = range_value / this.pixelArea;\r\n          let radius = Math.abs(Math.sqrt(area / Math.PI));\r\n          ctx.beginPath();\r\n          ctx.globalAlpha = 1.0;\r\n          ctx.strokeStyle = this.isBrightfield ? \"#000000\" : \"#ffffff\";\r\n          ctx.arc(center.x, center.y, radius, 0, 2 * Math.PI);\r\n          ctx.stroke();\r\n          ctx.closePath();\r\n        }\r\n      }\r\n    }\r\n  }\r\n\r\n  onParameterChange = (e) => {\r\n    if (typeof e === \"undefined\") return;\r\n    Object.assign(this.state, e);\r\n    if (this.toolLayerConfig) {\r\n      this.toolLayerConfig.parameters = Object.assign(\r\n        this.toolLayerConfig.parameters,\r\n        e\r\n      );\r\n    }\r\n  };\r\n\r\n  resetParameters = () => {\r\n    let stateObject = this.configFormRef.state;\r\n    for (let parameter of this.configFormRef.props.toolConfig.parameters) {\r\n      stateObject[parameter.name] = parameter.ui.default;\r\n    }\r\n    this.configFormRef.setState(stateObject);\r\n    setTimeout(() => {\r\n      this.configFormRef.props.onParameterChange(stateObject);\r\n      this.configFormRef.props.onApply(this.configFormRef);\r\n    }, 10);\r\n  };\r\n\r\n  exit() {}\r\n\r\n  /**\r\n   * Renders the Tool Configuration Inputs\r\n   */\r\n  renderConfiguration() {\r\n    return (\r\n      <div>\r\n        <div>\r\n          <Typography variant=\"h6\">\r\n            {this.name}\r\n            <Tooltip title=\"reset values to default\">\r\n              <IconButton\r\n                style={{ float: \"right\", top: \"-4px\" }}\r\n                onClick={() => this.resetParameters()}\r\n              >\r\n                <SettingsBackupRestoreIcon />\r\n              </IconButton>\r\n            </Tooltip>\r\n          </Typography>\r\n        </div>\r\n\r\n        <ConfigForm\r\n          ome={this.ome}\r\n          toolConfig={this.toolConfig}\r\n          state={this.state}\r\n          onParameterChange={this.onParameterChange}\r\n          structures={this.structures}\r\n          selectedLayer={this.selectedLayer}\r\n          histogramConfig={this.histogramConfig}\r\n          onApply={(component) => {\r\n            return this.state.preview\r\n              ? this.calcPreview(component)\r\n              : this.calcFull(component);\r\n          }}\r\n          onApplyAll={(component) => {\r\n            return this.calcFull(component, true);\r\n          }}\r\n          componentRef={(c) => {\r\n            this.configFormRef = c;\r\n          }}\r\n        />\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\n/**\r\n * Configuration Component to render the parameter inputs dynamically\r\n */\r\nclass ConfigFormRaw extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n    this.state = props.state;\r\n    this.accordionExpanded = false;\r\n    if (props.componentRef) props.componentRef(this);\r\n  }\r\n\r\n  UNSAFE_componentWillReceiveProps(nextProps) {\r\n    this.setState(nextProps.state);\r\n  }\r\n\r\n  validateParameters = () => {\r\n    for (let parameter of this.props.toolConfig.parameters) {\r\n      if (parameter.ui.component === \"flselect\") {\r\n        let nChannels = this.props.ome.channels.length;\r\n        let cIndex = this.state[parameter.name];\r\n        if (cIndex >= nChannels) {\r\n          this.onParameterChange(\r\n            parameter.name,\r\n            this.props.ome.channels.length - 1\r\n          );\r\n        } else if (cIndex < 0) {\r\n          if (this.props.structures[this.props.selectedLayer].toolParams) {\r\n            for (let toolParam of this.props.structures[\r\n              this.props.selectedLayer\r\n            ].toolParams) {\r\n              let tempCIndex = this.props.ome.channels.findIndex(\r\n                (c) => c.name === toolParam\r\n              );\r\n              if (tempCIndex >= 0) {\r\n                cIndex = tempCIndex;\r\n                break;\r\n              }\r\n            }\r\n          }\r\n        }\r\n        this.onParameterChange(parameter.name, cIndex);\r\n      }\r\n    }\r\n  };\r\n\r\n  componentDidMount = () => {\r\n    this.validateParameters();\r\n  };\r\n\r\n  componentDidUpdate = (prevProps) => {\r\n    if (prevProps.selectedLayer !== this.props.selectedLayer) {\r\n      this.validateParameters();\r\n    }\r\n  };\r\n\r\n  /**\r\n   * Update tool state\r\n   */\r\n  onParameterChange(key, value) {\r\n    let stateObject = { formControlInUse: key };\r\n    stateObject[key] = value;\r\n    if (this.state[key] !== value) {\r\n      this.setState(stateObject);\r\n      setTimeout(() => this.props.onParameterChange(stateObject), 10);\r\n    }\r\n  }\r\n\r\n  transformExponential(v, exponent) {\r\n    let result = v ** (1 / exponent);\r\n    return result;\r\n  }\r\n\r\n  render() {\r\n    let { onApply, onApplyAll, toolConfig, selectedLayer } = this.props;\r\n    let formControls = [];\r\n    let optionalFormControls = [];\r\n\r\n    for (let parameter of toolConfig.parameters) {\r\n      const digits = parameter.ui.step ? countDecimals(parameter.ui.step) : 0;\r\n      let formControl = null;\r\n      // hide parameter on unwanted structures\r\n      if (\r\n        parameter.ui.hiddenStructures &&\r\n        parameter.ui.hiddenStructures.length > 0\r\n      ) {\r\n        if (\r\n          parameter.ui.hiddenStructures.includes(-1) || // -1 means to hide this parameter on all structures\r\n          parameter.ui.hiddenStructures.includes(selectedLayer) || // hide for structure in config\r\n          !(parameter.name in this.state)\r\n        ) {\r\n          continue;\r\n        }\r\n      }\r\n      const component_type = parameter.ui.component;\r\n\r\n      switch (component_type) {\r\n        case \"required_structures\":\r\n          break;\r\n        /* Range Slider */\r\n        case \"range\":\r\n        case \"exp_range\":\r\n          formControl = (\r\n            <FormControl\r\n              key={toolConfig.name + \"_\" + parameter.name}\r\n              component=\"fieldset\"\r\n              fullWidth\r\n            >\r\n              <FormHelperText>\r\n                {parameter.ui.label +\r\n                  \" = \" +\r\n                  this.state[parameter.name][0].toFixed(digits) +\r\n                  \" ... \" +\r\n                  this.state[parameter.name][1].toFixed(digits)}\r\n              </FormHelperText>\r\n              <Grid container spacing={2} alignItems=\"center\">\r\n                <Grid item>\r\n                  <TextField\r\n                    variant=\"standard\"\r\n                    name=\"Textfield\"\r\n                    size=\"small\"\r\n                    style={styles.input}\r\n                    value={this.state[parameter.name][0].toFixed(digits)}\r\n                    margin=\"dense\"\r\n                    onChange={(e) =>\r\n                      this.onParameterChange(parameter.name, [\r\n                        e.target.value === \"\" ? 0 : Number(e.target.value),\r\n                        this.state[parameter.name][1],\r\n                      ])\r\n                    }\r\n                    onKeyDown={(e) => {\r\n                      if (e.key === \"Enter\") {\r\n                        this.onParameterChange(\"formControlInUse\", false);\r\n                        onApply(this);\r\n                      }\r\n                    }}\r\n                    inputProps={{\r\n                      step: parameter.ui.step,\r\n                      min: parameter.ui.min,\r\n                      max: parameter.ui.max,\r\n                      type: \"number\",\r\n                      \"aria-labelledby\": \"input-slider\",\r\n                    }}\r\n                  />\r\n                </Grid>\r\n                <Grid item xs>\r\n                  <Slider\r\n                    min={this.transformExponential(\r\n                      parameter.ui.min /\r\n                        (parameter.ui.step ? parameter.ui.step : 1),\r\n                      component_type === \"exp_range\" ? 2 : 1\r\n                    )}\r\n                    max={this.transformExponential(\r\n                      parameter.ui.max /\r\n                        (parameter.ui.step ? parameter.ui.step : 1),\r\n                      component_type === \"exp_range\" ? 2 : 1\r\n                    )}\r\n                    step={\r\n                      this.transformExponential(\r\n                        parameter.ui.max /\r\n                          (parameter.ui.step ? parameter.ui.step : 1),\r\n                        component_type === \"exp_range\" ? 2 : 1\r\n                      ) / 1000\r\n                    }\r\n                    value={[\r\n                      this.transformExponential(\r\n                        this.state[parameter.name][0] /\r\n                          (parameter.ui.step ? parameter.ui.step : 1),\r\n                        component_type === \"exp_range\" ? 2 : 1\r\n                      ),\r\n                      this.transformExponential(\r\n                        this.state[parameter.name][1] /\r\n                          (parameter.ui.step ? parameter.ui.step : 1),\r\n                        component_type === \"exp_range\" ? 2 : 1\r\n                      ),\r\n                    ]}\r\n                    onChange={(e, v) => {\r\n                      if (component_type === \"exp_range\") {\r\n                        v = [v[0] ** 2, v[1] ** 2];\r\n                      } else {\r\n                        v = [\r\n                          v[0] * (parameter.ui.step ? parameter.ui.step : 1),\r\n                          v[1] * (parameter.ui.step ? parameter.ui.step : 1),\r\n                        ];\r\n                      }\r\n                      this.onParameterChange(parameter.name, v);\r\n                    }}\r\n                    onChangeCommitted={() => {\r\n                      this.onParameterChange(\"formControlInUse\", false);\r\n                      onApply(this);\r\n                    }}\r\n                  />\r\n                </Grid>\r\n                <Grid item>\r\n                  <TextField\r\n                    variant=\"standard\"\r\n                    name=\"Textfield\"\r\n                    size=\"small\"\r\n                    style={styles.input}\r\n                    value={this.state[parameter.name][1].toFixed(digits)}\r\n                    margin=\"dense\"\r\n                    onChange={(e) =>\r\n                      this.onParameterChange(parameter.name, [\r\n                        this.state[parameter.name][0],\r\n                        e.target.value === \"\" ? 0 : Number(e.target.value),\r\n                      ])\r\n                    }\r\n                    onKeyDown={(e) => {\r\n                      if (e.key === \"Enter\") {\r\n                        onApply(this);\r\n                      }\r\n                    }}\r\n                    inputProps={{\r\n                      step: parameter.ui.step,\r\n                      min: parameter.ui.min,\r\n                      max: parameter.ui.max,\r\n                      type: \"number\",\r\n                      \"aria-labelledby\": \"input-slider\",\r\n                    }}\r\n                  />\r\n                </Grid>\r\n              </Grid>\r\n            </FormControl>\r\n          );\r\n          break;\r\n        /* Normal Slider */\r\n        case \"slider\":\r\n        case \"exp_slider\":\r\n          formControl = (\r\n            <FormControl\r\n              key={toolConfig.name + \"_\" + parameter.name}\r\n              component=\"fieldset\"\r\n              fullWidth\r\n            >\r\n              <FormHelperText>\r\n                {parameter.ui.label +\r\n                  \" = \" +\r\n                  (typeof this.state[parameter.name] !== \"undefined\"\r\n                    ? this.state[parameter.name].toFixed(digits)\r\n                    : \"\")}\r\n              </FormHelperText>\r\n              <Grid container spacing={2} alignItems=\"center\">\r\n                <Grid item xs>\r\n                  <Slider\r\n                    min={this.transformExponential(\r\n                      parameter.ui.min /\r\n                        (parameter.ui.step ? parameter.ui.step : 1),\r\n                      component_type === \"exp_slider\" ? 2 : 1\r\n                    )}\r\n                    max={this.transformExponential(\r\n                      parameter.ui.max /\r\n                        (parameter.ui.step ? parameter.ui.step : 1),\r\n                      component_type === \"exp_slider\" ? 2 : 1\r\n                    )}\r\n                    step={\r\n                      this.transformExponential(\r\n                        parameter.ui.max /\r\n                          (parameter.ui.step ? parameter.ui.step : 1),\r\n                        component_type === \"exp_slider\" ? 2 : 1\r\n                      ) / 1000\r\n                    }\r\n                    value={this.transformExponential(\r\n                      this.state[parameter.name] /\r\n                        (parameter.ui.step ? parameter.ui.step : 1),\r\n                      component_type === \"exp_slider\" ? 2 : 1\r\n                    )}\r\n                    onChangeCommitted={(e) => {\r\n                      if (e.type === \"mouseup\") {\r\n                        this.onParameterChange(\"formControlInUse\", false);\r\n                        onApply(this);\r\n                      }\r\n                    }}\r\n                    onChange={(e, v) => {\r\n                      if (component_type === \"exp_slider\") v = v ** 2;\r\n                      this.onParameterChange(\r\n                        parameter.name,\r\n                        v * (parameter.ui.step ? parameter.ui.step : 1)\r\n                      );\r\n                    }}\r\n                  />\r\n                </Grid>\r\n                <Grid item>\r\n                  <TextField\r\n                    variant=\"standard\"\r\n                    name=\"Textfield\"\r\n                    size=\"small\"\r\n                    style={styles.input}\r\n                    value={this.state[parameter.name].toFixed(digits)}\r\n                    margin=\"dense\"\r\n                    onChange={(e) => {\r\n                      this.onParameterChange(\r\n                        parameter.name,\r\n                        e.target.value === \"\" ? 0 : Number(e.target.value)\r\n                      );\r\n                    }}\r\n                    onKeyDown={(e) => {\r\n                      if (e.key === \"Enter\") {\r\n                        this.onParameterChange(\"formControlInUse\", false);\r\n                        onApply(this);\r\n                      }\r\n                    }}\r\n                    //onBlur={handleBlur}\r\n                    inputProps={{\r\n                      step: parameter.ui.step,\r\n                      min: parameter.ui.min,\r\n                      max: parameter.ui.max,\r\n                      type: \"number\",\r\n                      \"aria-labelledby\": \"input-slider\",\r\n                    }}\r\n                  />\r\n                </Grid>\r\n              </Grid>\r\n            </FormControl>\r\n          );\r\n          break;\r\n        /* Slider without update when release slider */\r\n        case \"staticSlider\":\r\n          formControl = (\r\n            <FormControl\r\n              key={toolConfig.name + \"_\" + parameter.name}\r\n              component=\"fieldset\"\r\n              fullWidth\r\n            >\r\n              <FormHelperText>\r\n                {parameter.ui.label +\r\n                  \" = \" +\r\n                  (typeof this.state[parameter.name] !== \"undefined\"\r\n                    ? this.state[parameter.name].toFixed(digits)\r\n                    : \"\")}\r\n              </FormHelperText>\r\n              <Grid container spacing={2} alignItems=\"center\">\r\n                <Grid item xs>\r\n                  <Slider\r\n                    min={\r\n                      parameter.ui.min /\r\n                      (parameter.ui.step ? parameter.ui.step : 1)\r\n                    }\r\n                    max={\r\n                      parameter.ui.max /\r\n                      (parameter.ui.step ? parameter.ui.step : 1)\r\n                    }\r\n                    value={\r\n                      this.state[parameter.name] /\r\n                      (parameter.ui.step ? parameter.ui.step : 1)\r\n                    }\r\n                    onChangeCommitted={() => {\r\n                      this.onParameterChange(\"formControlInUse\", false);\r\n                    }}\r\n                    onChange={(e, v) => {\r\n                      this.onParameterChange(\r\n                        parameter.name,\r\n                        v * (parameter.ui.step ? parameter.ui.step : 1)\r\n                      );\r\n                    }}\r\n                  />\r\n                </Grid>\r\n                <Grid item>\r\n                  <TextField\r\n                    variant=\"standard\"\r\n                    name=\"Textfield\"\r\n                    size=\"small\"\r\n                    style={styles.input}\r\n                    value={this.state[parameter.name].toFixed(digits)}\r\n                    margin=\"dense\"\r\n                    onChange={(e) => {\r\n                      this.onParameterChange(\r\n                        parameter.name,\r\n                        e.target.value === \"\" ? 0 : Number(e.target.value)\r\n                      );\r\n                    }}\r\n                    onKeyDown={(e) => {\r\n                      if (e.key === \"Enter\") {\r\n                        onApply(this);\r\n                      }\r\n                    }}\r\n                    //onBlur={handleBlur}\r\n                    inputProps={{\r\n                      step: parameter.ui.step,\r\n                      min: parameter.ui.min,\r\n                      max: parameter.ui.max,\r\n                      type: \"number\",\r\n                      \"aria-labelledby\": \"input-slider\",\r\n                    }}\r\n                  />\r\n                </Grid>\r\n              </Grid>\r\n            </FormControl>\r\n          );\r\n          break;\r\n        /* Selector */\r\n        case \"select\":\r\n          formControl = (\r\n            <FormControl\r\n              key={toolConfig.name + \"_\" + parameter.name}\r\n              component=\"fieldset\"\r\n              fullWidth\r\n              margin=\"dense\"\r\n            >\r\n              <InputLabel htmlFor={parameter.name}>\r\n                {parameter.ui.label}\r\n              </InputLabel>\r\n              <Select\r\n                name=\"SelectParameter\"\r\n                label={parameter.ui.label}\r\n                value={this.state[parameter.name]}\r\n                onChange={(e) =>\r\n                  this.onParameterChange(parameter.name, e.target.value)\r\n                }\r\n                inputProps={{\r\n                  name: parameter.name,\r\n                  id: parameter.name,\r\n                }}\r\n              >\r\n                {parameter.ui.options.map((c) => (\r\n                  <MenuItem key={c.name} value={c.name}>\r\n                    {c.label}\r\n                  </MenuItem>\r\n                ))}\r\n              </Select>\r\n            </FormControl>\r\n          );\r\n          break;\r\n        /* Fluorescence Channel Selector */\r\n        case \"flselect\":\r\n          formControl = (\r\n            <FormControl\r\n              key={toolConfig.name + \"_\" + parameter.name}\r\n              component=\"fieldset\"\r\n              style={{ marginTop: 10 }}\r\n              fullWidth\r\n            >\r\n              <InputLabel htmlFor={parameter.name}>\r\n                {parameter.ui.label}\r\n              </InputLabel>\r\n              <Select\r\n                name=\"SelectFlParameter\"\r\n                label={parameter.ui.label}\r\n                value={this.state[parameter.name]}\r\n                onChange={(e) => {\r\n                  this.onParameterChange(parameter.name, e.target.value);\r\n                }}\r\n                inputProps={{\r\n                  name: parameter.name,\r\n                  id: parameter.name,\r\n                }}\r\n              >\r\n                <MenuItem key=\"defaultValue\" value={-1}>\r\n                  Select a Channel to use\r\n                </MenuItem>\r\n                {this.props.ome.channels.map((c, index) => (\r\n                  <MenuItem key={c.name} value={index}>\r\n                    <span\r\n                      style={{\r\n                        width: \"40px\",\r\n                        height: \"20px\",\r\n                        border: \"1px solid #555459\",\r\n                        display: \"inline-block\",\r\n                        background: this.props.histogramConfig\r\n                          ? this.props.histogramConfig.channels[index].color\r\n                          : \"#ffffff\",\r\n                        float: \"left\",\r\n                        marginRight: \"10px\",\r\n                      }}\r\n                    ></span>\r\n                    {c.name}\r\n                  </MenuItem>\r\n                ))}\r\n                {this.props.structures[this.props.selectedLayer].toolParams &&\r\n                  this.props.structures[this.props.selectedLayer].toolParams\r\n                    .length === 1 &&\r\n                  this.props.ome.channels.length < 4 &&\r\n                  this.state[parameter.name] > 2 && (\r\n                    <MenuItem\r\n                      key={\r\n                        this.props.structures[this.props.selectedLayer]\r\n                          .toolParams[0]\r\n                      }\r\n                      value={this.props.ome.channels.length}\r\n                    >\r\n                      {\r\n                        this.props.structures[this.props.selectedLayer]\r\n                          .toolParams[0]\r\n                      }\r\n                    </MenuItem>\r\n                  )}\r\n              </Select>\r\n            </FormControl>\r\n          );\r\n          break;\r\n        /* Layer Dependency Selector */\r\n        case \"structureselect\":\r\n          // validation\r\n          if (this.state[parameter.name] >= this.props.structures.length) {\r\n            this.onParameterChange(\r\n              parameter.name,\r\n              this.props.structures.length - 1\r\n            );\r\n          }\r\n          formControl = (\r\n            <FormControl\r\n              key={toolConfig.name + \"_\" + parameter.name}\r\n              component=\"fieldset\"\r\n              style={{ marginTop: 10 }}\r\n              fullWidth\r\n            >\r\n              <InputLabel htmlFor={parameter.name}>\r\n                {parameter.ui.label}\r\n              </InputLabel>\r\n              <Select\r\n                name=\"SelectStructureParameter\"\r\n                label={parameter.ui.label}\r\n                value={this.state[parameter.name]}\r\n                onChange={(e) =>\r\n                  this.onParameterChange(parameter.name, e.target.value)\r\n                }\r\n                inputProps={{\r\n                  name: parameter.name,\r\n                  id: parameter.name,\r\n                }}\r\n              >\r\n                {this.props.structures &&\r\n                  this.props.structures.map((c, index) => (\r\n                    <MenuItem key={index} value={index}>\r\n                      {c.label}\r\n                    </MenuItem>\r\n                  ))}\r\n              </Select>\r\n            </FormControl>\r\n          );\r\n          break;\r\n        /* Numeric Input */\r\n        case \"number\":\r\n          formControl = (\r\n            <FormControl\r\n              key={toolConfig.name + \"_\" + parameter.name}\r\n              component=\"fieldset\"\r\n              fullWidth\r\n            >\r\n              <TextField\r\n                label={parameter.ui.label}\r\n                name=\"Textfield\"\r\n                value={this.state[parameter.name]}\r\n                onChange={(e) =>\r\n                  this.onParameterChange(parameter.name, e.target.value)\r\n                }\r\n                type=\"number\"\r\n                margin=\"normal\"\r\n                inputProps={{\r\n                  min: parameter.ui.min,\r\n                  max: parameter.ui.max,\r\n                  step: \"1\",\r\n                }}\r\n              />\r\n            </FormControl>\r\n          );\r\n          break;\r\n        /* Checkbox, Boolean Input */\r\n        case \"checkbox\":\r\n          formControl = (\r\n            <FormControl\r\n              key={toolConfig.name + \"_\" + parameter.name}\r\n              component=\"fieldset\"\r\n              fullWidth\r\n            >\r\n              <Tooltip\r\n                disableInteractive\r\n                title={parameter.description}\r\n                placement=\"left\"\r\n              >\r\n                <div>\r\n                  <FormControlLabel\r\n                    control={\r\n                      <Checkbox\r\n                        name=\"CheckboxParameter\"\r\n                        color=\"primary\"\r\n                        checked={this.state[parameter.name]}\r\n                        onChange={(e) => {\r\n                          this.onParameterChange(\r\n                            parameter.name,\r\n                            e.target.checked\r\n                          );\r\n                          //setTimeout(() => onApply(this), 10);\r\n                        }}\r\n                        value={parameter.ui.label}\r\n                      />\r\n                    }\r\n                    label={parameter.ui.label}\r\n                  />\r\n                </div>\r\n              </Tooltip>\r\n            </FormControl>\r\n          );\r\n          break;\r\n        /* Text Input */\r\n        default:\r\n          formControl = (\r\n            <FormControl\r\n              key={toolConfig.name + \"_\" + parameter.name}\r\n              component=\"fieldset\"\r\n              fullWidth\r\n            >\r\n              <TextField\r\n                label={parameter.ui.label}\r\n                name=\"Textfield\"\r\n                value={this.state[parameter.name]}\r\n                onChange={(e) =>\r\n                  this.onParameterChange(parameter.name, e.target.value)\r\n                }\r\n                margin=\"normal\"\r\n              />\r\n            </FormControl>\r\n          );\r\n      }\r\n      if (parameter.ui.optional) {\r\n        optionalFormControls.push(formControl);\r\n      } else {\r\n        formControls.push(formControl);\r\n      }\r\n    }\r\n\r\n    return (\r\n      <div>\r\n        {formControls}\r\n        {optionalFormControls.length > 0 && (\r\n          <Accordion\r\n            style={{\r\n              borderBottom: \"1px solid rgba(0, 0, 0, .125)\",\r\n              width: \"100%\",\r\n              overflow: \"hidden\",\r\n            }}\r\n            expanded={this.accordionExpanded}\r\n            onChange={() => {\r\n              this.accordionExpanded = !this.accordionExpanded;\r\n              this.forceUpdate();\r\n            }}\r\n          >\r\n            <AccordionSummary expandIcon={<ExpandMoreIcon />}>\r\n              <Typography>\r\n                Optional parameters: {this.state.selectedModel}\r\n              </Typography>\r\n            </AccordionSummary>\r\n            <AccordionDetails>{optionalFormControls}</AccordionDetails>\r\n          </Accordion>\r\n        )}\r\n        {!this.state.preview && this.props.selectedLayer === 0 && (\r\n          // Detect Base ROI for all files\r\n          <Button\r\n            style={{ marginTop: \"5px\" }}\r\n            fullWidth\r\n            variant=\"contained\"\r\n            color=\"primary\"\r\n            onClick={() => onApplyAll(this)}\r\n          >\r\n            Apply to all files\r\n          </Button>\r\n        )}\r\n        <Button\r\n          style={{ marginTop: \"5px\" }}\r\n          fullWidth\r\n          variant=\"contained\"\r\n          color=\"primary\"\r\n          onClick={() => onApply(this)}\r\n        >\r\n          Apply\r\n        </Button>\r\n        {this.state.showDownloadProgress && (\r\n          <div>\r\n            <TextField\r\n              style={{ marginTop: \"10px\", textAlign: \"center\", width: \"100%\" }}\r\n              name=\"Textfield\"\r\n              label=\"Downloading weights from existing model:\"\r\n              fullWidth\r\n              defaultValue=\"-\"\r\n              value={this.state.modelDownloadProgress + \"%\"}\r\n              InputProps={{\r\n                readOnly: true,\r\n                disableUnderline: true,\r\n              }}\r\n            />\r\n            <LinearProgress\r\n              variant=\"determinate\"\r\n              value={this.state.modelDownloadProgress}\r\n            />\r\n          </div>\r\n        )}\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nConfigFormRaw.propTypes = {\r\n  state: PropTypes.object,\r\n  toolConfig: PropTypes.object,\r\n  ome: PropTypes.object,\r\n  structures: PropTypes.array,\r\n  selectedLayer: PropTypes.number,\r\n  onParameterChange: PropTypes.func,\r\n  onApply: PropTypes.func,\r\n  onApplyAll: PropTypes.func,\r\n  histogramConfig: PropTypes.object,\r\n  componentRef: PropTypes.func,\r\n};\r\n\r\nconst ConfigForm = withSpinloader(ConfigFormRaw);\r\n\r\nexport default InstantAnalysisTool;\r\n","import React from \"react\";\r\n\r\nimport {\r\n  Button,\r\n  FormControl,\r\n  RadioGroup,\r\n  FormControlLabel,\r\n  Radio,\r\n  Typography,\r\n} from \"@mui/material\";\r\nimport { inv } from \"mathjs\";\r\nimport { CommentROI } from \"../../utils/ROI\";\r\nimport Tool from \"./Tool\";\r\n\r\nclass LandmarkTool extends Tool {\r\n  name = \"Landmark registration\";\r\n  noConfig = false;\r\n  mouseActionState = \"free\";\r\n  commentState = {\r\n    commentValue: \"\",\r\n    color: \"#D0021B\",\r\n    selectedTool: \"rectangle\",\r\n  };\r\n  selectedLandmarkIdx = 0;\r\n  gripIdx = null;\r\n  radioValue = \"#00FF00\";\r\n  deletedNumberQ = {};\r\n  baseId = null;\r\n\r\n  setLayer(obj) {\r\n    this.ome = obj.ome;\r\n    this.isBrightfield = obj.ome.channels[0].type === \"brightfield\";\r\n    this.lineColor = this.isBrightfield ? \"#000000\" : \"#ffffff\";\r\n    this.selectionColor = this.lineColor;\r\n    this.layer = obj.layer;\r\n    this.roiLayers = obj.roiLayers;\r\n    this.selectedLayer = obj.selectedLayer;\r\n    this.structures = obj.structures;\r\n    this.drawLayer = obj.drawLayer;\r\n    this.commentLayer = obj.commentLayer\r\n      ? obj.commentLayer\r\n      : { commentRois: [] };\r\n    this.landmarkLayer = obj.landmarkLayer\r\n      ? obj.landmarkLayer\r\n      : { landmarkRois: [] };\r\n    this.fileId = obj.fileId;\r\n    this.landmarkLayers = obj.landmarkLayers;\r\n    this.rendererDict = obj.rendererDict;\r\n    this.splitscreenFileIds = obj.splitscreenFileIds;\r\n  }\r\n\r\n  //return index if mousepoint is inside a mark\r\n  checkBoundingBox(layer, scale, mousePoint) {\r\n    let linelength = 15 / scale;\r\n    let p = mousePoint;\r\n    for (let i = 0; i < layer.length; i++) {\r\n      let point = layer[i].regions;\r\n      let topLeft = [point[0] - linelength, point[1] - linelength];\r\n      let bottomRight = [point[0] + linelength, point[1] + linelength];\r\n      if (\r\n        p.x > topLeft[0] &&\r\n        p.x < bottomRight[0] &&\r\n        p.y > topLeft[1] &&\r\n        p.y < bottomRight[1]\r\n      ) {\r\n        return i;\r\n      }\r\n    }\r\n  }\r\n\r\n  mouse(params) {\r\n    let { event, p, scale } = params;\r\n    let mouseP = p;\r\n    let roiColor = this.radioValue === \"#00FF00\" ? \"#00FF00\" : \"#FF0000\";\r\n    let selectedLandmarkIdx = this.landmarkLayer[\"landmarkRois\"].length;\r\n    let markNumber = selectedLandmarkIdx;\r\n\r\n    if (typeof this.deletedNumberQ[this.fileId] === \"undefined\") {\r\n      this.deletedNumberQ[this.fileId] = [];\r\n    }\r\n\r\n    if (event.type === \"mousedown\") {\r\n      this.mouseActionState = \"down\";\r\n      if (selectedLandmarkIdx > 0 && event.button === 0) {\r\n        let tag = this.landmarkLayer[\"landmarkRois\"][0].color;\r\n        if (tag === \"#00FF00\") {\r\n          this.baseId = this.fileId;\r\n          console.log(\"tagged as base\");\r\n        }\r\n        if (tag !== this.radioValue) {\r\n          this.radioValue = tag;\r\n          return;\r\n        }\r\n        roiColor = tag;\r\n      } else if (selectedLandmarkIdx === 0 && event.button === 0) {\r\n        for (const value of Object.values(this.splitscreenFileIds)) {\r\n          if (this.landmarkLayers[value][\"landmarkRois\"].length > 0) {\r\n            if (\r\n              this.landmarkLayers[value][\"landmarkRois\"][0].color === \"#00FF00\"\r\n            ) {\r\n              this.radioValue = \"#FF0000\";\r\n              roiColor = \"#FF0000\";\r\n              this.baseId = value;\r\n            }\r\n          }\r\n        }\r\n        if (this.radioValue === \"#00FF00\") {\r\n          this.baseId = this.fileId;\r\n          roiColor = \"#00FF00\";\r\n        }\r\n      }\r\n    } else if (event.type === \"mousemove\" && this.mouseActionState === \"down\") {\r\n      this.mouseActionState = \"drag\";\r\n    } else if (event.type === \"mouseup\") {\r\n      this.mouseActionState = \"free\";\r\n    }\r\n\r\n    if (this.mouseActionState === \"down\" && event.button === 0) {\r\n      if (\r\n        this.radioValue === \"#00FF00\" &&\r\n        this.splitscreenFileIds.includes(this.baseId) &&\r\n        this.fileId !== this.baseId\r\n      ) {\r\n        console.log(\"this file is not tagged as base\");\r\n        this.radioValue = \"#FF0000\";\r\n        return;\r\n      }\r\n      if (selectedLandmarkIdx > 0) {\r\n        let idx = this.checkBoundingBox(\r\n          this.landmarkLayer[\"landmarkRois\"],\r\n          scale,\r\n          mouseP\r\n        );\r\n        if (!idx && idx !== 0) {\r\n          if (this.deletedNumberQ[this.fileId].length !== 0) {\r\n            markNumber = this.deletedNumberQ[this.fileId].pop() - 1;\r\n          }\r\n          this.landmarkLayer[\"landmarkRois\"][selectedLandmarkIdx] =\r\n            new CommentROI(\r\n              [mouseP.x, mouseP.y],\r\n              roiColor,\r\n              \"landmark\",\r\n              markNumber + 1,\r\n              0\r\n            );\r\n        } else if (typeof idx === \"number\") {\r\n          this.gripIdx = idx;\r\n        }\r\n      } else if (selectedLandmarkIdx === 0) {\r\n        this.landmarkLayer[\"landmarkRois\"][selectedLandmarkIdx] =\r\n          new CommentROI(\r\n            [mouseP.x, mouseP.y],\r\n            roiColor,\r\n            \"landmark\",\r\n            markNumber + 1,\r\n            0\r\n          );\r\n      }\r\n    } else if (this.mouseActionState === \"free\" && event.type === \"mouseup\") {\r\n      //set new location of landmark after dragging it\r\n      if (typeof this.gripIdx === \"number\") {\r\n        this.landmarkLayer[\"landmarkRois\"][this.gripIdx].regions = [\r\n          mouseP.x,\r\n          mouseP.y,\r\n        ];\r\n        this.gripIdx = null;\r\n      }\r\n    }\r\n\r\n    // delete specific mark\r\n    if (this.mouseActionState === \"down\" && event.button === 2) {\r\n      let idx = this.checkBoundingBox(\r\n        this.landmarkLayer[\"landmarkRois\"],\r\n        scale,\r\n        mouseP\r\n      );\r\n      if (!idx && idx !== 0) {\r\n        return;\r\n      } else if (typeof idx === \"number\") {\r\n        let number = this.landmarkLayer[\"landmarkRois\"][idx].commentValue;\r\n        this.landmarkLayer.landmarkRois.splice(idx, 1);\r\n        this.deletedNumberQ[this.fileId].push(number);\r\n        if (this.landmarkLayer.landmarkRois.length === 0) {\r\n          this.deletedNumberQ[this.fileId] = [];\r\n          this.baseId = null;\r\n        }\r\n      }\r\n    }\r\n\r\n    //disable custom mouse cursor when dragging with middle mouse button\r\n    if (event.button === 1) {\r\n      this.mouseActionState = \"dragImage\";\r\n    } else if (event.button === 0 && this.mouseActionState === \"dragImage\") {\r\n      this.mouseActionState = \"free\";\r\n    }\r\n  }\r\n\r\n  drawCustomCursor() {}\r\n\r\n  onClickRemoveTransformation = () => {\r\n    let r = this.rendererDict[this.fileId];\r\n    let a = r.props.tiles.getTransformationMatrix(this.fileId);\r\n    if (Array.isArray(a)) {\r\n      let m = [\r\n        [a[0], a[1], a[2]],\r\n        [a[3], a[4], a[5]],\r\n        [a[6], a[7], a[8]],\r\n      ];\r\n      let h = inv(m);\r\n      let matrix = [\r\n        h[0][0],\r\n        h[0][1],\r\n        h[0][2],\r\n        h[1][0],\r\n        h[1][1],\r\n        h[1][2],\r\n        h[2][0],\r\n        h[2][1],\r\n        h[2][2],\r\n      ];\r\n      r.transformLandmark(matrix, 1);\r\n      r.transformAnnotation(matrix, 1);\r\n      r.props.tiles.removeTransformationMatrix(this.fileId);\r\n      r.reset();\r\n      this.rendererDict[this.fileId].props.onChangeChain(\r\n        false,\r\n        this.rendererDict[this.fileId].props.splitscreenIdx,\r\n        this.fileId\r\n      );\r\n      window.showWarningSnackbar(\"Alignment removed\");\r\n    }\r\n  };\r\n\r\n  reallocateLandmarkNumbers = (bMarks) => {\r\n    for (let [id, layer] of Object.entries(this.landmarkLayers)) {\r\n      let l = layer.landmarkRois;\r\n      if (bMarks.length === l.length) {\r\n        for (let i = 0; i < l.length; i++) {\r\n          if (i + 1 !== l[i].commentValue) {\r\n            if (l.length > 0) {\r\n              l.sort((a, b) => (a.commentValue > b.commentValue ? 1 : -1));\r\n              for (let i = 0; i < l.length; i++) {\r\n                l[i].commentValue = i + 1;\r\n              }\r\n              this.deletedNumberQ[id] = [];\r\n            }\r\n            break;\r\n          }\r\n        }\r\n      }\r\n    }\r\n  };\r\n\r\n  onClickApplyTransformation = () => {\r\n    if (this.splitscreenFileIds.length < 2) {\r\n      window.showWarningSnackbar(\"No base is present\");\r\n      return;\r\n    }\r\n    let baseMarks = [];\r\n    let targetMarks = {};\r\n    this.baseId = null;\r\n    for (let [id, layer] of Object.entries(this.landmarkLayers)) {\r\n      if (layer.landmarkRois.length > 0) {\r\n        let l = layer.landmarkRois;\r\n        if (l[0].color === \"#00FF00\") {\r\n          //sort computed value\r\n          if (\r\n            this.rendererDict[this.fileId].props.splitscreenFileIds.includes(id)\r\n          ) {\r\n            if (this.baseId !== null) {\r\n              window.showWarningSnackbar(\"More than one base is present\");\r\n              return;\r\n            }\r\n            this.baseId = id;\r\n            let j = 1;\r\n            while (baseMarks.length < l.length) {\r\n              for (let i = 0; i < l.length; i++) {\r\n                if (Number(l[i].commentValue) === j) {\r\n                  baseMarks.push(l[i].regions);\r\n                }\r\n              }\r\n              j++;\r\n            }\r\n          }\r\n        } else if (l[0].color === \"#FF0000\") {\r\n          if (\r\n            this.rendererDict[this.fileId].props.splitscreenFileIds.includes(id)\r\n          ) {\r\n            //sort computed Value\r\n            targetMarks[id] = [];\r\n            let j = 1;\r\n            while (targetMarks[id].length < l.length) {\r\n              for (let i = 0; i < l.length; i++) {\r\n                if (Number(l[i].commentValue) === j) {\r\n                  targetMarks[id].push(l[i].regions);\r\n                }\r\n              }\r\n              j++;\r\n            }\r\n          }\r\n        }\r\n      }\r\n    }\r\n    this.reallocateLandmarkNumbers(baseMarks);\r\n    this.rendererDict[this.baseId].props.onChangeChain(\r\n      true,\r\n      this.rendererDict[this.baseId].props.splitscreenIdx,\r\n      this.baseId\r\n    );\r\n    for (let [id, points] of Object.entries(targetMarks)) {\r\n      let a = this.rendererDict[id].props.tiles.getTransformationMatrix(\r\n        this.fileId\r\n      );\r\n      if (baseMarks.length !== points.length && baseMarks.length < 4) {\r\n        window.showWarningSnackbar(\"Unequal amount of base and target marks\");\r\n        window.showWarningSnackbar(\"Please set at least 4 base marks\");\r\n        break;\r\n      } else if (baseMarks.length < 4) {\r\n        window.showWarningSnackbar(\"Please set at least 4 base marks\");\r\n        break;\r\n      } else if (baseMarks.length !== points.length) {\r\n        window.showWarningSnackbar(\"Unequal amount of base and target marks\");\r\n        break;\r\n      } else if (Array.isArray(a)) {\r\n        window.showWarningSnackbar(\r\n          \"Target already aligned. Remove alignment first\"\r\n        );\r\n        break;\r\n      } else {\r\n        this.rendererDict[id].props.onChangeChain(\r\n          true,\r\n          this.rendererDict[id].props.splitscreenIdx,\r\n          id\r\n        );\r\n        this.rendererDict[id].generateLandmarkTransformation(\r\n          baseMarks,\r\n          targetMarks[id],\r\n          this.baseId,\r\n          id,\r\n          this.rendererDict[this.baseId].props.ome\r\n        );\r\n      }\r\n    }\r\n  };\r\n\r\n  handleRadioChange = (event) => {\r\n    this.radioValue = event.target.value;\r\n    window.forceSidebarUpdate();\r\n  };\r\n\r\n  onClickRemoveAllMarks = () => {\r\n    this.landmarkLayer.landmarkRois = [];\r\n    this.deletedNumberQ[this.fileId] = [];\r\n    if (this.fileId === this.baseId) {\r\n      this.baseId = null;\r\n    }\r\n  };\r\n\r\n  exit() {}\r\n\r\n  renderConfiguration = () => {\r\n    return (\r\n      <div>\r\n        <Typography variant=\"h6\">{this.name}:</Typography>\r\n        <FormControl component=\"fieldset\">\r\n          <RadioGroup value={this.radioValue} onChange={this.handleRadioChange}>\r\n            <FormControlLabel\r\n              value={\"#00FF00\"}\r\n              control={<Radio />}\r\n              label=\"Set landmarks on base\"\r\n            />\r\n            <FormControlLabel\r\n              value={\"#FF0000\"}\r\n              control={<Radio />}\r\n              label=\"Set landmarks on target\"\r\n            />\r\n          </RadioGroup>\r\n        </FormControl>\r\n        <Button\r\n          style={{ marginTop: \"5px\" }}\r\n          fullWidth\r\n          variant=\"contained\"\r\n          color=\"primary\"\r\n          onClick={() => {\r\n            this.onClickApplyTransformation();\r\n          }}\r\n        >\r\n          Align Image\r\n        </Button>\r\n\r\n        <Button\r\n          style={{ marginTop: \"5px\" }}\r\n          fullWidth\r\n          variant=\"contained\"\r\n          color=\"primary\"\r\n          onClick={() => {\r\n            this.onClickRemoveTransformation();\r\n          }}\r\n        >\r\n          Remove Alignment\r\n        </Button>\r\n        <Button\r\n          style={{ marginTop: \"5px\" }}\r\n          fullWidth\r\n          variant=\"contained\"\r\n          color=\"primary\"\r\n          onClick={() => {\r\n            this.onClickRemoveAllMarks();\r\n          }}\r\n        >\r\n          Remove landmarks\r\n        </Button>\r\n      </div>\r\n    );\r\n  };\r\n}\r\n\r\nexport default LandmarkTool;\r\n","import { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport { FormLabel, FormControl, Slider, Typography } from \"@mui/material\";\r\nimport {\r\n  updateLayer,\r\n  findSiblingRoiLayers,\r\n  createRegionRoi,\r\n} from \"../../utils/PolygonUtil\";\r\nimport Tool from \"./Tool\";\r\nimport React from \"react\";\r\nimport MagicWandToolLib from \"magic-wand-tool\";\r\n\r\nlet hatchOffset = 0;\r\n\r\nclass MagicWandTool extends Tool {\r\n  name = \"MagicWand\";\r\n  noConfig = false;\r\n  flag = false;\r\n  downScale = 2;\r\n  removeOverlap = null;\r\n  tempRemoveOverlap = null;\r\n  threshold = 15; //default threshold value with best result\r\n  shiftflag = false;\r\n  points = [];\r\n  drawRegion = {\r\n    regions: [],\r\n    inverted: false,\r\n  };\r\n  lastp = null;\r\n\r\n  setLayer(obj) {\r\n    this.ctx = obj.ctx; //context\r\n    this.canvas = obj.ctx.canvas; //canvas\r\n    this.layer = obj.layer; //layer\r\n    this.roiLayers = obj.roiLayers;\r\n    this.selectedLayer = obj.selectedLayer;\r\n    this.structures = obj.structures;\r\n    this.originalSelectedLayer = obj.selectedLayer;\r\n    this.drawLayer = obj.drawLayer;\r\n\r\n    const project = obj.viewerConfig_project;\r\n    if (this.removeOverlap === null) {\r\n      this.removeOverlap = project.projectProperties[\"PreventOverlap\"];\r\n    }\r\n    if (this.tempRemoveOverlap === null) {\r\n      this.tempRemoveOverlap = project.projectProperties[\"PreventOverlap\"];\r\n    }\r\n\r\n    // set removeOverlap\r\n    // save current settings (in tempRemoveOverlap) if structure gets changed\r\n    if (obj.selectedLayer === 0) {\r\n      if (!this.noConfig) {\r\n        this.noConfig = true;\r\n        this.tempRemoveOverlap = this.removeOverlap;\r\n        this.removeOverlap = false;\r\n        window.forceSidebarUpdate();\r\n      }\r\n    } else {\r\n      if (this.noConfig) {\r\n        this.noConfig = false;\r\n        this.removeOverlap = this.tempRemoveOverlap;\r\n        window.forceSidebarUpdate();\r\n      }\r\n    }\r\n  }\r\n\r\n  setPreviewRect() {}\r\n\r\n  getScale = () => {\r\n    return this.ctx ? this.ctx.getTransform().a : 1;\r\n  };\r\n\r\n  getPosition = () => {\r\n    return {\r\n      x: -this.ctx.getTransform().e,\r\n      y: -this.ctx.getTransform().f,\r\n    };\r\n  };\r\n\r\n  useMagicWand(p, color, subtype, name, positionInRoiLayer, fullyLoaded) {\r\n    this.lastp = p;\r\n    let position = {\r\n      x: parseInt(p.x * this.getScale() - this.getPosition().x, 10),\r\n      y: parseInt(p.y * this.getScale() - this.getPosition().y, 10),\r\n    };\r\n\r\n    let ctx = this.canvas.getContext(\"2d\");\r\n    //let points = [];\r\n    //this.startPoint = position;\r\n    let imageData = ctx.getImageData(\r\n      0,\r\n      0,\r\n      this.canvas.width,\r\n      this.canvas.height\r\n    );\r\n\r\n    // let len = imageData.data.length;\r\n    // for (j = 0; j < len; j++){\r\n    //   imageData.data[j] = 255 - imageData.data[j];\r\n    // }\r\n\r\n    let image = {\r\n      data: imageData.data,\r\n      width: this.canvas.width,\r\n      height: this.canvas.height,\r\n      bytes: 4,\r\n    };\r\n\r\n    let wandMask = MagicWandToolLib.floodFill(\r\n      image,\r\n      position.x,\r\n      position.y,\r\n      this.threshold,\r\n      null,\r\n      true\r\n    );\r\n\r\n    let len = wandMask.data.length;\r\n    for (let j = 0; j < len; j++) {\r\n      if (wandMask.data[j] === 1) {\r\n        wandMask.data[j] = 0;\r\n      } else {\r\n        wandMask.data[j] = 1;\r\n      }\r\n    }\r\n\r\n    if (wandMask) {\r\n      wandMask = MagicWandToolLib.gaussBlurOnlyBorder(wandMask, 2, null);\r\n    }\r\n\r\n    //let nonzeromask = wandMask.data.filter(number=>number>0);\r\n    //console.log(\"nonzeromask:\",nonzeromask.length);\r\n    //console.log(this.wandMask.data);\r\n\r\n    //wandMask = MagicWandToolLib.gaussBlurOnlyBorder(wandMask, 5, null);\r\n    let cacheInd = MagicWandToolLib.getBorderIndices(wandMask);\r\n    //console.log(cacheInd.length);\r\n    //this.ctx.clearRect(0, 0, this.canvas.width, this.canvas.height);\r\n\r\n    let w = this.canvas.width;\r\n    let h = this.canvas.height;\r\n    let x,\r\n      j,\r\n      i = null;\r\n    let y = null;\r\n    let hatchLength = 4;\r\n    hatchOffset = (hatchOffset + 1) % (hatchLength * 2);\r\n\r\n    ctx.clearRect(0, 0, w, h);\r\n\r\n    len = cacheInd.length;\r\n    for (j = 0; j < len; j++) {\r\n      i = cacheInd[j];\r\n      x = i % w; // calc x by index\r\n      y = (i - x) / w; // calc y by index\r\n      //let k = (y * w + x) * 4;\r\n      if ((x + y + hatchOffset) % (hatchLength * 2) < hatchLength) {\r\n        // detect hatch color\r\n        this.points.push([\r\n          (x + this.getPosition().x) / this.getScale(),\r\n          (y + this.getPosition().y) / this.getScale(),\r\n        ]);\r\n      } else {\r\n        this.points.push([\r\n          (x + this.getPosition().x) / this.getScale(),\r\n          (y + this.getPosition().y) / this.getScale(),\r\n        ]);\r\n      }\r\n    }\r\n\r\n    this.points = this.trace(wandMask);\r\n    if (this.points.length > 2) {\r\n      let drawRegion = {\r\n        regions: [\r\n          createRegionRoi([this.points], 0, null, null, null, 0, false),\r\n        ],\r\n        inverted: false,\r\n      };\r\n      updateLayer(\r\n        this.layer,\r\n        drawRegion,\r\n        this.clear,\r\n        color,\r\n        subtype,\r\n        name,\r\n        this.roiLayers[this.selectedLayer].tree,\r\n        positionInRoiLayer,\r\n        fullyLoaded,\r\n        false,\r\n        this.roiLayers[this.parentLayer],\r\n        this.structures[this.originalSelectedLayer].id,\r\n        false,\r\n        this.clickedOnRoi,\r\n        this.activeTab === 1 // defines if it should be treated as an object\r\n      );\r\n    }\r\n  }\r\n\r\n  trace(wandMask) {\r\n    let simplifyTolerant = 0;\r\n    let simplifyCount = 50;\r\n    let cs = MagicWandToolLib.traceContours(wandMask);\r\n    cs = MagicWandToolLib.simplifyContours(cs, simplifyTolerant, simplifyCount);\r\n\r\n    wandMask = null;\r\n\r\n    //draw contours\r\n    this.points = [];\r\n    for (var i = 0; i < cs.length; i++) {\r\n      if (!cs[i].inner) continue;\r\n      var ps = cs[i].points;\r\n      this.points.push([\r\n        (ps[0].x + this.getPosition().x) / this.getScale(),\r\n        (ps[0].y + this.getPosition().y) / this.getScale(),\r\n      ]);\r\n      for (var j = 1; j < ps.length; j++) {\r\n        this.points.push([\r\n          (ps[j].x + this.getPosition().x) / this.getScale(),\r\n          (ps[j].y + this.getPosition().y) / this.getScale(),\r\n        ]);\r\n      }\r\n    }\r\n    return this.points;\r\n  }\r\n\r\n  mouseWheelEvent = (e) => {\r\n    if (e.shiftKey) {\r\n      if (e.deltaY > 0 && this.threshold > 0) {\r\n        this.threshold--;\r\n        updateLayer(this.layer, this.drawRegion, true, 0);\r\n        this.useMagicWand(this.lastp);\r\n        window.forceSidebarUpdate();\r\n      } else if (e.deltaY < 0 && this.threshold < 250) {\r\n        this.threshold++;\r\n        updateLayer(this.layer, this.drawRegion, true, 0);\r\n        this.useMagicWand(this.lastp);\r\n        window.forceSidebarUpdate();\r\n      }\r\n    }\r\n  };\r\n\r\n  mouse(params) {\r\n    let {\r\n      event,\r\n      p,\r\n      color,\r\n      subtype,\r\n      name,\r\n      positionInRoiLayer,\r\n      fullyLoaded,\r\n      parentIdx,\r\n    } = params;\r\n    let parentLayer = parentIdx;\r\n    if (\r\n      event.type === \"mousedown\" &&\r\n      (event.button === 0 || event.button === 2)\r\n    ) {\r\n      this.drawLayer.regionRois = [];\r\n      this.drawLayer.inverted = false;\r\n      // right mouse button -> clear\r\n      this.clear = event.button === 2;\r\n      this.drawLayer.clear = this.clear;\r\n\r\n      // update position history\r\n      this.startPoint = p;\r\n      this.points = [];\r\n      this.points.push([p.x, p.y]);\r\n\r\n      // set drawing flag\r\n      this.flag = true;\r\n    } else if (\r\n      event.type === \"mouseup\" ||\r\n      (this.flag && event.type === \"mouseleave\")\r\n    ) {\r\n      this.useMagicWand(\r\n        p,\r\n        color,\r\n        subtype,\r\n        name,\r\n        positionInRoiLayer,\r\n        fullyLoaded\r\n      ); //func goes here\r\n\r\n      // release drawing flag\r\n      this.flag = false;\r\n\r\n      if (this.drawLayer.regionRois.length > 0) {\r\n        //if not empty update drawing\r\n        this.drawRegion.regions = [this.drawLayer.regionRois[0]];\r\n        //updateLayer(this.layer, drawRegion, this.clear);\r\n        let overlapRoiLayers = this.removeOverlap\r\n          ? findSiblingRoiLayers(\r\n              this.structures,\r\n              this.selectedLayer,\r\n              this.roiLayers\r\n            )\r\n          : [];\r\n\r\n        updateLayer(\r\n          this.layer,\r\n          this.drawRegion,\r\n          this.clear,\r\n          color,\r\n          subtype,\r\n          name,\r\n          this.roiLayers[this.selectedLayer].tree,\r\n          positionInRoiLayer,\r\n          fullyLoaded,\r\n          false,\r\n          this.roiLayers[parentLayer],\r\n          this.structures[this.selectedLayer].id,\r\n          overlapRoiLayers\r\n        );\r\n        this.drawLayer.regionRois = [];\r\n      }\r\n    } else if (event.type === \"mousemove\") {\r\n      // if (this.flag) {\r\n      //   let points = [];\r\n      //   points.push([this.startPoint.x, this.startPoint.y]);\r\n      //   points.push([p.x, this.startPoint.y]);\r\n      //   points.push([p.x, p.y]);\r\n      //   points.push([this.startPoint.x, p.y]);\r\n      //   console.log(typeof layer)\r\n      //   let drawRegion = {\r\n      //     regions: [createRegionRoi([points], 0, null, null, null, 0, false)],\r\n      //     inverted: false,\r\n      //   };\r\n      //   this.drawLayer.regionRois = []; //only one region will be drawn to the draw layer\r\n      //   updateLayer(this.drawLayer, drawRegion, false, color, subtype, name);\r\n      // }\r\n      //do nothing\r\n    }\r\n  }\r\n\r\n  drawCustomCursor() {\r\n    // no custom cursor\r\n    if (this.ctx) {\r\n      //this.ctx.fillStyle = \"red\";\r\n      //this.ctx.fillRect(10, 10, 50, 50);\r\n      //let imgData = this.ctx.getImageData(10, 10, 50, 50);\r\n      //this.ctx.putImageData(imgData, 10, 70,0,0,5000,5000);\r\n      //this.useMagicWand(ctx, mousePosition);\r\n      //this.ctx.clearRect(5000, 5000, this.canvas.width, this.canvas.height);\r\n    }\r\n  }\r\n\r\n  exit() {}\r\n\r\n  renderConfiguration() {\r\n    return (\r\n      <div>\r\n        <Typography variant=\"h6\">{this.name}:</Typography>\r\n        <ConfigForm\r\n          threshold={this.threshold}\r\n          onChangeThreshold={(e) => {\r\n            this.threshold = e;\r\n            window.forceSidebarUpdate();\r\n          }}\r\n        />\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nclass ConfigForm extends Component {\r\n  render() {\r\n    let { onChangeThreshold, threshold } = this.props;\r\n    return (\r\n      <div style={{ marginRight: \"15px\" }}>\r\n        <FormControl component=\"fieldset\" fullWidth>\r\n          <FormLabel component=\"legend\">{\"Threshold = \" + threshold}</FormLabel>\r\n          <Slider\r\n            min={0}\r\n            max={255}\r\n            value={threshold}\r\n            onChange={(e, v) => {\r\n              onChangeThreshold(v);\r\n            }}\r\n          />\r\n          <FormLabel component=\"legend\">\r\n            {\"use shift + mouse wheel for region growth and decrease\"}\r\n          </FormLabel>\r\n        </FormControl>\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nConfigForm.propTypes = {\r\n  onChangeThreshold: PropTypes.func,\r\n  threshold: PropTypes.number,\r\n};\r\n\r\nexport default MagicWandTool;\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport Tool from \"./Tool\";\r\n\r\nimport {\r\n  lineArrayBuffer,\r\n  updateDrawLayer,\r\n  updateLayer,\r\n  findSiblingRoiLayers,\r\n  findSameLayer,\r\n  checkIfStructureHidden,\r\n  findClickedRoi,\r\n  createRegionRoi,\r\n  distance,\r\n} from \"../../utils/PolygonUtil\";\r\nimport OverlapConfigForm from \"./ConfigForms/OverlapConfigForm\";\r\nimport { FormLabel, FormControl, Slider, Typography } from \"@mui/material\";\r\n\r\nclass PenTool extends Tool {\r\n  name = \"Pen\";\r\n  flag = false;\r\n  downScale = 2;\r\n  penRadius = 10;\r\n  minPenRadius = 1;\r\n  maxPenRadius = 200;\r\n  removeOverlap = null;\r\n  removeOverlapSame = null;\r\n  lastP = null;\r\n  tempRemoveOverlap = null;\r\n  tempRemoveOverlapSame = null;\r\n  useNodeDrawingMode = null;\r\n  tempUseNodeDrawingMode = null;\r\n\r\n  setLayer(obj) {\r\n    this.ome = obj.ome;\r\n    this.isBrightfield = obj.ome.channels[0].type === \"brightfield\";\r\n    this.layer = obj.layer;\r\n    this.roiLayers = obj.roiLayers;\r\n    let layerResults = findSameLayer(obj.structures, obj.selectedLayer);\r\n    this.selectedLayer = layerResults[0];\r\n    this.parentLayer = layerResults[1];\r\n    this.originalSelectedLayer = obj.selectedLayer;\r\n    this.structures = obj.structures;\r\n    this.drawLayer = obj.drawLayer;\r\n\r\n    const project = obj.viewerConfig_project;\r\n    if (this.removeOverlap === null) {\r\n      this.removeOverlap = project.projectProperties[\"PreventOverlap\"];\r\n    }\r\n    if (this.tempRemoveOverlap === null) {\r\n      this.tempRemoveOverlap = project.projectProperties[\"PreventOverlap\"];\r\n    }\r\n    if (this.removeOverlapSame === null) {\r\n      this.removeOverlapSame = project.projectProperties[\"PreventOverlapSame\"];\r\n    }\r\n    if (this.useNodeDrawingMode === null) {\r\n      this.useNodeDrawingMode = project.projectProperties[\"NodeDrawingMode\"]\r\n        ? true\r\n        : false;\r\n    }\r\n\r\n    // set removeOverlap\r\n    // save current settings (in tempRemoveOverlap) if structure gets changed\r\n    if (obj.selectedLayer === 0) {\r\n      if (!this.noConfig) {\r\n        this.noConfig = true;\r\n        this.tempRemoveOverlap = this.removeOverlap;\r\n        this.tempRemoveOverlapSame = this.removeOverlapSame;\r\n        this.removeOverlap = false;\r\n        this.removeOverlapSame = false;\r\n        this.tempUseNodeDrawingMode = this.useNodeDrawingMode;\r\n        this.useNodeDrawingMode = false;\r\n        window.forceSidebarUpdate();\r\n      }\r\n    } else {\r\n      if (this.noConfig) {\r\n        this.noConfig = false;\r\n        this.removeOverlap = this.tempRemoveOverlap;\r\n        this.removeOverlapSame = this.tempRemoveOverlapSame;\r\n        this.useNodeDrawingMode = this.tempUseNodeDrawingMode;\r\n        window.forceSidebarUpdate();\r\n      }\r\n    }\r\n  }\r\n\r\n  onKeyDown(e) {\r\n    let delta = Math.max(1, parseInt(this.penRadius * 0.05, 10));\r\n    if (e.code === \"KeyS\") {\r\n      this.penRadius -= delta;\r\n    } else if (e.code === \"KeyW\") {\r\n      this.penRadius += delta;\r\n    }\r\n    if (this.penRadius < this.minPenRadius) {\r\n      this.penRadius = this.minPenRadius;\r\n    }\r\n    if (this.penRadius > this.maxPenRadius) {\r\n      this.penRadius = this.maxPenRadius;\r\n    }\r\n    window.forceSidebarUpdate();\r\n  }\r\n\r\n  setPreviewRect() {}\r\n\r\n  addPoint = (event, p) => {\r\n    let eventPoint = { x: event.clientX, y: event.clientY };\r\n    if (this.line.length < 3 || this.useNodeDrawingMode) {\r\n      this.line.push([p.x, p.y]);\r\n      this.lastEventPoint = eventPoint;\r\n    } else {\r\n      const dist = distance(this.lastEventPoint, eventPoint);\r\n      if (dist < 10) {\r\n        this.line[this.line.length - 1] = [p.x, p.y];\r\n      } else {\r\n        this.line.push([p.x, p.y]);\r\n        this.lastEventPoint = eventPoint;\r\n      }\r\n    }\r\n  };\r\n\r\n  mouse(params) {\r\n    let { event, p, color, subtype, name, positionInRoiLayer, fullyLoaded } =\r\n      params;\r\n    if (typeof p === \"undefined\") {\r\n      this.line = [];\r\n      return;\r\n    }\r\n    // mouse middle button\r\n    if (event.button === 1) {\r\n      return;\r\n    }\r\n    if (this.useNodeDrawingMode) {\r\n      if (\r\n        event.type === \"mousedown\" &&\r\n        (event.button === 0 || event.button === 2)\r\n      ) {\r\n        if (this.flag) {\r\n          if (\r\n            (this.clear && event.button === 2) ||\r\n            (!this.clear && event.button === 0)\r\n          ) {\r\n            this.addPointToDrawLayer(event, p, color, subtype);\r\n          } else {\r\n            this.applyDrawLayer(\r\n              color,\r\n              subtype,\r\n              name,\r\n              positionInRoiLayer,\r\n              fullyLoaded,\r\n              event,\r\n              p\r\n            );\r\n          }\r\n        } else {\r\n          this.initDrawing(subtype, name, color, event, p);\r\n        }\r\n      }\r\n      return;\r\n    }\r\n    if (\r\n      event.type === \"mousedown\" &&\r\n      (event.button === 0 || event.button === 2)\r\n    ) {\r\n      this.initDrawing(subtype, name, color, event, p);\r\n    } else if (event.type === \"mouseup\") {\r\n      this.applyDrawLayer(\r\n        color,\r\n        subtype,\r\n        name,\r\n        positionInRoiLayer,\r\n        fullyLoaded\r\n      );\r\n      this.drawLayer.regionRois = [];\r\n    } else if (event.type === \"mousemove\") {\r\n      if (this.flag) {\r\n        this.addPointToDrawLayer(event, p, color, subtype);\r\n      }\r\n    }\r\n    this.lastP = p;\r\n  }\r\n\r\n  initDrawing = (subtype, name, color, event, p) => {\r\n    checkIfStructureHidden(\r\n      this.structures,\r\n      this.selectedLayer,\r\n      subtype,\r\n      name,\r\n      color\r\n    );\r\n    this.clear = event.button === 2;\r\n    this.drawLayer.clear = this.clear;\r\n    this.line = [[p.x, p.y]];\r\n    this.flag = true;\r\n    if (this.removeOverlapSame) {\r\n      this.clickedOnRoi = findClickedRoi(\r\n        p,\r\n        this.selectedLayer,\r\n        this.structures,\r\n        this.roiLayers,\r\n        this.includeBaseROI\r\n      );\r\n    }\r\n  };\r\n\r\n  replaceLastPointInDrawLayer = (event, p, color, subtype) => {\r\n    if (this.line.length === 1) {\r\n      this.addPointToDrawLayer(event, p, color, subtype);\r\n      return;\r\n    }\r\n    if (this.line.length > 1) {\r\n      this.line.pop();\r\n      this.addPointToDrawLayer(event, p, color, subtype);\r\n    }\r\n  };\r\n\r\n  applyDrawLayer = (color, subtype, name, positionInRoiLayer, fullyLoaded) => {\r\n    let linePoly = lineArrayBuffer(\r\n      this.line,\r\n      this.penRadius,\r\n      this.ome.sizeX,\r\n      this.ome.sizeY\r\n    );\r\n    if (linePoly === undefined) return;\r\n    this.flag = false;\r\n    this.drawLayer.regionRois = []; //only one region will be drawn to the draw layer\r\n    let lineRegions = {\r\n      regions:\r\n        linePoly !== null\r\n          ? [\r\n              createRegionRoi(\r\n                [linePoly.geometry.coordinates],\r\n                color,\r\n                subtype,\r\n                name,\r\n                fullyLoaded,\r\n                this.structures[this.originalSelectedLayer].id,\r\n                false\r\n              ),\r\n            ]\r\n          : [],\r\n      inverted: false,\r\n    };\r\n    let overlapRoiLayers = [];\r\n    if (this.removeOverlapSame) {\r\n      overlapRoiLayers.push(this.roiLayers[this.selectedLayer]);\r\n    }\r\n    if (this.removeOverlap) {\r\n      let siblingRoiLayers = findSiblingRoiLayers(\r\n        this.structures,\r\n        this.selectedLayer,\r\n        this.roiLayers\r\n      );\r\n      siblingRoiLayers.map((layer) => overlapRoiLayers.push(layer));\r\n    }\r\n    updateLayer(\r\n      this.layer,\r\n      lineRegions,\r\n      this.clear,\r\n      color,\r\n      subtype,\r\n      name,\r\n      this.roiLayers[this.selectedLayer].tree,\r\n      positionInRoiLayer,\r\n      fullyLoaded,\r\n      false,\r\n      this.roiLayers[this.parentLayer],\r\n      this.structures[this.originalSelectedLayer].id,\r\n      overlapRoiLayers,\r\n      this.clickedOnRoi\r\n    );\r\n    this.drawLayer.regionRois = [];\r\n    this.line = [];\r\n  };\r\n\r\n  addPointToDrawLayer = (event, p, color, subtype) => {\r\n    // update position history\r\n    this.addPoint(event, p);\r\n    this.drawLayer.regionRois = []; //only one region will be drawn to the draw layer\r\n    let linePoly = lineArrayBuffer(\r\n      this.line,\r\n      this.penRadius,\r\n      this.ome.sizeX,\r\n      this.ome.sizeY\r\n    );\r\n\r\n    let lineRegions = {\r\n      regions: linePoly !== null ? [linePoly.geometry.coordinates] : [],\r\n      inverted: false,\r\n    };\r\n    updateDrawLayer(this.drawLayer, lineRegions, false, color, subtype, name);\r\n  };\r\n\r\n  drawCustomCursor(ctx, mousePosition, fkt, fromGallery) {\r\n    let p = mousePosition;\r\n    fromGallery = fromGallery && fromGallery === true ? true : false;\r\n    ctx.beginPath();\r\n    ctx.globalAlpha = 1.0;\r\n    ctx.strokeStyle = this.isBrightfield ? \"#000000\" : \"#ffffff\";\r\n    if (this.useNodeDrawingMode && this.line?.length > 0) {\r\n      const lineEnd = this.line[this.line.length - 1];\r\n      let previewLine = [lineEnd, [p.x, p.y]];\r\n      let linePoly = lineArrayBuffer(\r\n        previewLine,\r\n        this.penRadius,\r\n        this.ome.sizeX,\r\n        this.ome.sizeY\r\n      );\r\n      let points = linePoly.geometry.coordinates[0];\r\n      ctx.lineWidth = 2 / fkt;\r\n      ctx.strokeStyle = \"#000000\";\r\n      ctx.moveTo(points[0][0], points[0][1]);\r\n      for (let p of points) {\r\n        ctx.lineTo(p[0], p[1]);\r\n      }\r\n    } else {\r\n      let penRad =\r\n        fkt && fromGallery && fromGallery === true\r\n          ? this.penRadius * fkt\r\n          : this.penRadius;\r\n      ctx.arc(p.x, p.y, penRad, 0, 2 * Math.PI);\r\n    }\r\n    ctx.stroke();\r\n    ctx.closePath();\r\n  }\r\n\r\n  exit() {}\r\n\r\n  renderConfiguration() {\r\n    return (\r\n      <div>\r\n        <Typography variant=\"h6\">{this.name}:</Typography>\r\n        <ConfigForm\r\n          penRadius={this.penRadius}\r\n          minPenRadius={this.minPenRadius}\r\n          maxPenRadius={this.maxPenRadius}\r\n          removeOverlap={this.removeOverlap}\r\n          onChangePenRadius={(e) => {\r\n            this.penRadius = e;\r\n            window.forceSidebarUpdate();\r\n          }}\r\n          onChangeRemoveOverlap={(e) => (this.removeOverlap = e)}\r\n        />\r\n        <OverlapConfigForm\r\n          removeOverlap={this.removeOverlap}\r\n          removeOverlapSame={this.removeOverlapSame}\r\n          useNodeDrawingMode={this.useNodeDrawingMode}\r\n          onChangeUseNodeDrawingMode={(e) => (this.useNodeDrawingMode = e)}\r\n          onChangeRemoveOverlap={(e) => (this.removeOverlap = e)}\r\n          onChangeRemoveOverlapSame={(e) => (this.removeOverlapSame = e)}\r\n        />\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nclass ConfigForm extends Component {\r\n  state = {\r\n    removeOverlap: this.props.removeOverlap,\r\n  };\r\n\r\n  render() {\r\n    let { onChangePenRadius, penRadius, minPenRadius, maxPenRadius } =\r\n      this.props;\r\n\r\n    return (\r\n      <div style={{ marginRight: \"15px\" }}>\r\n        <FormControl component=\"fieldset\" fullWidth>\r\n          <FormLabel component=\"legend\">\r\n            {\"Line thickness = \" + penRadius + \" (smaller: S, wider: W)\"}\r\n          </FormLabel>\r\n          <Slider\r\n            min={minPenRadius}\r\n            max={maxPenRadius}\r\n            value={penRadius}\r\n            onChange={(e, v) => {\r\n              onChangePenRadius(v);\r\n              this.setState({ penRadius: v });\r\n            }}\r\n          />\r\n        </FormControl>\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nConfigForm.propTypes = {\r\n  removeOverlap: PropTypes.bool,\r\n  onChangePenRadius: PropTypes.func,\r\n  penRadius: PropTypes.number,\r\n  minPenRadius: PropTypes.number,\r\n  maxPenRadius: PropTypes.number,\r\n};\r\n\r\nexport default PenTool;\r\n","export class TinyQueue {\r\n  constructor(data = [], compare = defaultCompare) {\r\n    this.data = data;\r\n    this.length = this.data.length;\r\n    this.compare = compare;\r\n\r\n    if (this.length > 0) {\r\n      for (let i = (this.length >> 1) - 1; i >= 0; i--) this._down(i);\r\n    }\r\n  }\r\n\r\n  push(item) {\r\n    this.data.push(item);\r\n    this.length++;\r\n    this._up(this.length - 1);\r\n  }\r\n\r\n  pop() {\r\n    if (this.length === 0) return undefined;\r\n\r\n    const top = this.data[0];\r\n    const bottom = this.data.pop();\r\n    this.length--;\r\n\r\n    if (this.length > 0) {\r\n      this.data[0] = bottom;\r\n      this._down(0);\r\n    }\r\n\r\n    return top;\r\n  }\r\n\r\n  peek() {\r\n    return this.data[0];\r\n  }\r\n\r\n  _up(pos) {\r\n    const { data, compare } = this;\r\n    const item = data[pos];\r\n\r\n    while (pos > 0) {\r\n      const parent = (pos - 1) >> 1;\r\n      const current = data[parent];\r\n      if (compare(item, current) >= 0) break;\r\n      data[pos] = current;\r\n      pos = parent;\r\n    }\r\n\r\n    data[pos] = item;\r\n  }\r\n\r\n  _down(pos) {\r\n    const { data, compare } = this;\r\n    const halfLength = this.length >> 1;\r\n    const item = data[pos];\r\n\r\n    while (pos < halfLength) {\r\n      let left = (pos << 1) + 1;\r\n      let best = data[left];\r\n      const right = left + 1;\r\n\r\n      if (right < this.length && compare(data[right], best) < 0) {\r\n        left = right;\r\n        best = data[right];\r\n      }\r\n      if (compare(best, item) >= 0) break;\r\n\r\n      data[pos] = best;\r\n      pos = left;\r\n    }\r\n\r\n    data[pos] = item;\r\n  }\r\n}\r\n\r\nfunction defaultCompare(a, b) {\r\n  return a < b ? -1 : a > b ? 1 : 0;\r\n}\r\n","import { TinyQueue } from \"./TinyQueue\";\r\n\r\nexport function knn(tree, x, y, n, predicate, maxDistance) {\r\n  var node = tree.data,\r\n    result = [],\r\n    toBBox = tree.toBBox,\r\n    i,\r\n    child,\r\n    dist,\r\n    candidate;\r\n\r\n  var queue = new TinyQueue(undefined, compareDist);\r\n\r\n  while (node) {\r\n    for (i = 0; i < node.children.length; i++) {\r\n      child = node.children[i];\r\n      dist = boxDist(x, y, node.leaf ? toBBox(child) : child);\r\n      if (!maxDistance || dist <= maxDistance * maxDistance) {\r\n        queue.push({\r\n          node: child,\r\n          isItem: node.leaf,\r\n          dist: dist,\r\n        });\r\n      }\r\n    }\r\n\r\n    while (queue.length && queue.peek().isItem) {\r\n      candidate = queue.pop().node;\r\n      if (!predicate || predicate(candidate)) result.push(candidate);\r\n      if (n && result.length === n) return result;\r\n    }\r\n\r\n    node = queue.pop();\r\n    if (node) node = node.node;\r\n  }\r\n\r\n  return result;\r\n}\r\n\r\nfunction compareDist(a, b) {\r\n  return a.dist - b.dist;\r\n}\r\n\r\nfunction boxDist(x, y, box) {\r\n  var dx = axisDist(x, box.minX, box.maxX),\r\n    dy = axisDist(y, box.minY, box.maxY);\r\n  return dx * dx + dy * dy;\r\n}\r\n\r\nfunction axisDist(k, min, max) {\r\n  return k < min ? min - k : k <= max ? 0 : k - max;\r\n}\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport RBush from \"rbush\";\r\nimport { knn } from \"../../utils/rbush-knn\";\r\nimport Tool from \"./Tool\";\r\n\r\nimport {\r\n  FormControl,\r\n  MenuItem,\r\n  Table,\r\n  TableRow,\r\n  TableCell,\r\n  TableBody,\r\n  TextField,\r\n  IconButton,\r\n  Tooltip,\r\n  Typography,\r\n} from \"@mui/material\";\r\nimport { VisibilityOff, Visibility } from \"@mui/icons-material\";\r\nimport SketchColorPicker from \"../../../common/components/SketchColorPicker\";\r\n\r\nclass PlotNearestRoiTool extends Tool {\r\n  name = \"Plot nearest objects\";\r\n  nearestLayer = null;\r\n  colors = {\r\n    main: \"red\",\r\n    nearest: \"green\",\r\n    connection: \"blue\",\r\n    maxDistance: \"red\",\r\n  };\r\n  config = {\r\n    mainRadius: 80,\r\n    nearestRadius: 50,\r\n    connectionLineWidth: 1,\r\n    maxDistance: 1000,\r\n    mainVisibility: true,\r\n    nearestVisibility: true,\r\n    connectionVisibility: true,\r\n    maxDistanceVisibility: true,\r\n    nearestLayerId: null,\r\n  };\r\n\r\n  setLayer(obj) {\r\n    this.structures = obj.structures;\r\n    this.layer = obj.layer;\r\n    this.roiLayers = obj.roiLayers;\r\n    this.selectedLayer = obj.selectedLayer;\r\n  }\r\n\r\n  setPreviewRect() {}\r\n\r\n  mouse(params) {\r\n    let { event, p } = params;\r\n    this.curX = p.x;\r\n    this.curY = p.y;\r\n\r\n    // mouse middle button\r\n    if (event.button === 1) {\r\n      return;\r\n    }\r\n  }\r\n\r\n  drawDistanceCircles(ctx, regionRois, color, radius) {\r\n    for (let regionRoi of regionRois) {\r\n      let center = regionRoi.center;\r\n      ctx.beginPath();\r\n      ctx.globalAlpha = 1.0;\r\n      ctx.strokeStyle = color;\r\n      ctx.arc(center.x, center.y, radius, 0, 2 * Math.PI);\r\n      ctx.stroke();\r\n      ctx.closePath();\r\n    }\r\n  }\r\n\r\n  drawLayerCircles(ctx, fkt, regionRois, color, radius) {\r\n    for (let regionRoi of regionRois) {\r\n      let center = regionRoi.center;\r\n      ctx.beginPath();\r\n      ctx.globalAlpha = 1.0;\r\n      ctx.fillStyle = color;\r\n      ctx.arc(center.x, center.y, radius, 0, 2 * Math.PI);\r\n      ctx.fill();\r\n      ctx.closePath();\r\n    }\r\n  }\r\n\r\n  drawNearestConnections(ctx, regionRois, tree, color) {\r\n    for (let regionRoi of regionRois) {\r\n      let center = regionRoi.center;\r\n      let nearestCenters = knn(\r\n        tree,\r\n        center.x,\r\n        center.y,\r\n        1,\r\n        null,\r\n        this.config.maxDistance\r\n      ).map((item) => item.center);\r\n      if (nearestCenters.length > 0) {\r\n        let center2 = nearestCenters[0];\r\n        ctx.beginPath();\r\n        ctx.strokeStyle = color;\r\n        ctx.moveTo(center.x, center.y);\r\n        ctx.lineTo(center2.x, center2.y);\r\n        ctx.stroke();\r\n      }\r\n    }\r\n  }\r\n\r\n  /**\r\n   * Draw a custom cursor\r\n   */\r\n  drawCustomCursor(ctx, mousePosition, fkt) {\r\n    if (this.config.maxDistanceVisibility) {\r\n      this.drawDistanceCircles(\r\n        ctx,\r\n        this.roiLayers[this.selectedLayer].layer.regionRois,\r\n        this.colors.maxDistance,\r\n        this.config.maxDistance\r\n      );\r\n    }\r\n\r\n    ctx.lineWidth = this.config.connectionLineWidth / fkt;\r\n    if (\r\n      this.roiLayers[this.nearestLayer] &&\r\n      this.selectedLayer !== this.nearestLayer\r\n    ) {\r\n      if (this.config.connectionVisibility) {\r\n        let selectedTree = new RBush();\r\n        for (let regionRoi of this.roiLayers[this.selectedLayer].layer\r\n          .regionRois) {\r\n          selectedTree.insert(regionRoi.treeItem);\r\n        }\r\n        this.drawNearestConnections(\r\n          ctx,\r\n          this.roiLayers[this.nearestLayer].layer.regionRois,\r\n          selectedTree,\r\n          this.colors.connection,\r\n          1\r\n        );\r\n      }\r\n\r\n      if (this.config.nearestVisibility) {\r\n        this.drawLayerCircles(\r\n          ctx,\r\n          fkt,\r\n          this.roiLayers[this.nearestLayer].layer.regionRois,\r\n          this.colors.nearest,\r\n          this.config.nearestRadius\r\n        );\r\n      }\r\n    }\r\n\r\n    if (this.config.mainVisibility) {\r\n      this.drawLayerCircles(\r\n        ctx,\r\n        fkt,\r\n        this.roiLayers[this.selectedLayer].layer.regionRois,\r\n        this.colors.main,\r\n        this.config.mainRadius\r\n      );\r\n    }\r\n  }\r\n\r\n  setSelectedRoiLayer = (id) => {\r\n    for (let i = 0; i < this.structures.length; i++) {\r\n      if (this.structures[i].id === id) {\r\n        this.nearestLayer = i;\r\n      }\r\n    }\r\n  };\r\n\r\n  onChangeColors = (colors) => {\r\n    this.colors = colors;\r\n    window.forceSidebarUpdate();\r\n  };\r\n\r\n  onChangeConfig = (config) => {\r\n    this.config = config;\r\n    window.forceSidebarUpdate();\r\n  };\r\n\r\n  exit() {}\r\n\r\n  renderConfiguration = () => {\r\n    return (\r\n      <div>\r\n        <Typography variant=\"h6\">{this.name}:</Typography>\r\n        <ConfigForm\r\n          colors={this.colors}\r\n          config={this.config}\r\n          onChangeColors={(colors) => this.onChangeColors(colors)}\r\n          onChangeConfig={(config) => this.onChangeConfig(config)}\r\n          roiLayers={this.roiLayers}\r\n          selectedLayer={this.selectedLayer}\r\n          structures={this.structures}\r\n          onChangeSelection={(id) => {\r\n            this.setSelectedRoiLayer(id);\r\n          }}\r\n        />\r\n      </div>\r\n    );\r\n  };\r\n}\r\n\r\nclass ConfigForm extends Component {\r\n  onChangeColor = (color, type) => {\r\n    let colorObject = this.props.colors;\r\n    colorObject[type] = color;\r\n    this.props.onChangeColors(colorObject);\r\n  };\r\n  onChangeConfig = (value, type) => {\r\n    let configObject = this.props.config;\r\n    configObject[type] = value;\r\n    this.props.onChangeConfig(configObject);\r\n  };\r\n  render() {\r\n    const { structures, roiLayers, selectedLayer, config, colors } = this.props;\r\n    const styles = {\r\n      numberInput: {\r\n        width: 60,\r\n      },\r\n    };\r\n\r\n    const filteredStructures = structures.filter(\r\n      (val, i) =>\r\n        i !== selectedLayer && roiLayers[i].layer.regionRois.length > 0\r\n    );\r\n    if (config.nearestLayerId === null && filteredStructures.length > 0) {\r\n      this.props.onChangeSelection(filteredStructures[0].id);\r\n      this.onChangeConfig(filteredStructures[0].id, \"nearestLayerId\");\r\n    }\r\n\r\n    return (\r\n      <Table>\r\n        <TableBody>\r\n          <TableRow>\r\n            <TableCell component=\"th\" scope=\"row\">\r\n              Main\r\n            </TableCell>\r\n            <TableCell align=\"right\">\r\n              <TextField\r\n                style={styles.numberInput}\r\n                name=\"Textfield\"\r\n                label=\"Radius\"\r\n                type=\"number\"\r\n                value={config.mainRadius === null ? \"\" : config.mainRadius}\r\n                onChange={(e) => {\r\n                  let value = Math.max(1, e.target.value);\r\n                  this.onChangeConfig(value, \"mainRadius\");\r\n                }}\r\n              />\r\n            </TableCell>\r\n            <TableCell padding=\"checkbox\" align=\"right\">\r\n              <Tooltip disableInteractive title=\"Hide connections\">\r\n                <IconButton\r\n                  onClick={() => {\r\n                    this.onChangeConfig(\r\n                      !config.mainVisibility,\r\n                      \"mainVisibility\"\r\n                    );\r\n                  }}\r\n                  size=\"large\"\r\n                >\r\n                  {config.mainVisibility ? <Visibility /> : <VisibilityOff />}\r\n                </IconButton>\r\n              </Tooltip>\r\n            </TableCell>\r\n            <TableCell padding=\"checkbox\" align=\"right\">\r\n              <SketchColorPicker\r\n                color={colors.main}\r\n                handleChange={(color) => {\r\n                  this.onChangeColor(color, \"main\");\r\n                  this.onChangeColor(color, \"maxDistance\");\r\n                }}\r\n              />\r\n            </TableCell>\r\n          </TableRow>\r\n          <TableRow>\r\n            <TableCell component=\"th\" scope=\"row\">\r\n              <FormControl fullWidth>\r\n                <TextField\r\n                  select\r\n                  name=\"Textfield\"\r\n                  label=\"Nearest Structures\"\r\n                  value={config.nearestLayerId}\r\n                  onChange={(e) => {\r\n                    this.props.onChangeSelection(e.target.value);\r\n                    this.onChangeConfig(e.target.value, \"nearestLayerId\");\r\n                  }}\r\n                >\r\n                  {filteredStructures.map((structure, idx) => {\r\n                    return (\r\n                      <MenuItem key={idx} value={structure.id}>\r\n                        {structure.label} {idx}\r\n                      </MenuItem>\r\n                    );\r\n                  })}\r\n                </TextField>\r\n              </FormControl>\r\n            </TableCell>\r\n            <TableCell align=\"right\">\r\n              <TextField\r\n                style={styles.numberInput}\r\n                name=\"Textfield\"\r\n                label=\"Radius\"\r\n                type=\"number\"\r\n                value={config.nearestRadius}\r\n                onChange={(e) => {\r\n                  let value = Math.max(1, e.target.value);\r\n                  this.onChangeConfig(value, \"nearestRadius\");\r\n                }}\r\n              />\r\n            </TableCell>\r\n            <TableCell padding=\"checkbox\" align=\"right\">\r\n              <Tooltip disableInteractive title=\"Hide connections\">\r\n                <IconButton\r\n                  onClick={() => {\r\n                    this.onChangeConfig(\r\n                      !config.nearestVisibility,\r\n                      \"nearestVisibility\"\r\n                    );\r\n                  }}\r\n                  size=\"large\"\r\n                >\r\n                  {config.nearestVisibility ? (\r\n                    <Visibility />\r\n                  ) : (\r\n                    <VisibilityOff />\r\n                  )}\r\n                </IconButton>\r\n              </Tooltip>\r\n            </TableCell>\r\n            <TableCell padding=\"checkbox\" align=\"right\">\r\n              <SketchColorPicker\r\n                color={colors.nearest}\r\n                handleChange={(color) => this.onChangeColor(color, \"nearest\")}\r\n              />\r\n            </TableCell>\r\n          </TableRow>\r\n          <TableRow>\r\n            <TableCell component=\"th\" scope=\"row\">\r\n              Connection\r\n            </TableCell>\r\n            <TableCell align=\"right\">\r\n              <TextField\r\n                style={styles.numberInput}\r\n                name=\"Textfield\"\r\n                label=\"thickness\"\r\n                type=\"number\"\r\n                value={config.connectionLineWidth}\r\n                onChange={(e) => {\r\n                  let value = Math.max(1, e.target.value);\r\n                  this.onChangeConfig(value, \"connectionLineWidth\");\r\n                }}\r\n              />\r\n            </TableCell>\r\n            <TableCell padding=\"checkbox\" align=\"right\">\r\n              <Tooltip disableInteractive title=\"Hide connections\">\r\n                <IconButton\r\n                  onClick={() => {\r\n                    this.onChangeConfig(\r\n                      !config.connectionVisibility,\r\n                      \"connectionVisibility\"\r\n                    );\r\n                  }}\r\n                  size=\"large\"\r\n                >\r\n                  {config.connectionVisibility ? (\r\n                    <Visibility />\r\n                  ) : (\r\n                    <VisibilityOff />\r\n                  )}\r\n                </IconButton>\r\n              </Tooltip>\r\n            </TableCell>\r\n            <TableCell padding=\"checkbox\" align=\"right\">\r\n              <SketchColorPicker\r\n                color={colors.connection}\r\n                handleChange={(color) =>\r\n                  this.onChangeColor(color, \"connection\")\r\n                }\r\n              />\r\n            </TableCell>\r\n          </TableRow>\r\n\r\n          <TableRow>\r\n            <TableCell component=\"th\" scope=\"row\">\r\n              Maximum Distance\r\n            </TableCell>\r\n            <TableCell align=\"right\">\r\n              <TextField\r\n                style={styles.numberInput}\r\n                name=\"Textfield\"\r\n                label=\"distance\"\r\n                type=\"number\"\r\n                value={config.maxDistance}\r\n                onChange={(e) => {\r\n                  let value = Math.max(1, e.target.value);\r\n                  this.onChangeConfig(value, \"maxDistance\");\r\n                }}\r\n              />\r\n            </TableCell>\r\n            <TableCell padding=\"checkbox\" align=\"right\">\r\n              <Tooltip disableInteractive title=\"Hide max distance circle\">\r\n                <IconButton\r\n                  onClick={() => {\r\n                    this.onChangeConfig(\r\n                      !config.maxDistanceVisibility,\r\n                      \"maxDistanceVisibility\"\r\n                    );\r\n                  }}\r\n                  size=\"large\"\r\n                >\r\n                  {config.maxDistanceVisibility ? (\r\n                    <Visibility />\r\n                  ) : (\r\n                    <VisibilityOff />\r\n                  )}\r\n                </IconButton>\r\n              </Tooltip>\r\n            </TableCell>\r\n            <TableCell padding=\"checkbox\" align=\"right\">\r\n              <SketchColorPicker\r\n                color={colors.maxDistance}\r\n                handleChange={(color) =>\r\n                  this.onChangeColor(color, \"maxDistance\")\r\n                }\r\n              />\r\n            </TableCell>\r\n          </TableRow>\r\n        </TableBody>\r\n      </Table>\r\n    );\r\n  }\r\n}\r\n\r\nConfigForm.propTypes = {\r\n  colors: PropTypes.object,\r\n  onChangeColors: PropTypes.func,\r\n  config: PropTypes.object,\r\n  onChangeConfig: PropTypes.func,\r\n  structures: PropTypes.array,\r\n  roiLayers: PropTypes.array,\r\n  selectedLayer: PropTypes.number,\r\n  onChangeSelection: PropTypes.func,\r\n};\r\n\r\nexport default PlotNearestRoiTool;\r\n","import {\r\n  updateLayer,\r\n  updateDrawLayer,\r\n  findSiblingRoiLayers,\r\n  findSameLayer,\r\n  findClickedRoi,\r\n  checkIfStructureHidden,\r\n  createRegionRoi,\r\n  findRoi,\r\n} from \"../../utils/PolygonUtil\";\r\nimport Tool from \"./Tool\";\r\nimport React from \"react\";\r\nimport OverlapConfigForm from \"./ConfigForms/OverlapConfigForm\";\r\nimport {\r\n  Tabs,\r\n  Tab,\r\n  FormControl,\r\n  FormControlLabel,\r\n  RadioGroup,\r\n  Radio,\r\n  Typography,\r\n} from \"@mui/material\";\r\n\r\nclass RectangleTool extends Tool {\r\n  name = \"Rectangle\";\r\n  noConfig = false;\r\n  includeBaseROI = false;\r\n  flag = false;\r\n  downScale = 2;\r\n  points = [];\r\n  removeOverlap = null;\r\n  removeOverlapSame = null;\r\n  tempRemoveOverlap = null;\r\n  tempRemoveOverlapSame = null;\r\n  activeTab = 0;\r\n  drawMode = \"draw\";\r\n  selectedRoi = null;\r\n  selectedIndex = null;\r\n  resizeMode = \"\";\r\n  resizingStarted = \"\";\r\n\r\n  setLayer(obj) {\r\n    this.ome = obj.ome;\r\n    this.updateObjectMode = obj.updateObjectMode;\r\n    this.isBrightfield = obj.ome.channels[0].type === \"brightfield\";\r\n    this.layer = obj.layer;\r\n    this.roiLayers = obj.roiLayers;\r\n    let layerResults = findSameLayer(obj.structures, obj.selectedLayer);\r\n    this.selectedLayer = layerResults[0];\r\n    this.parentLayer = layerResults[1];\r\n    this.originalSelectedLayer = obj.selectedLayer;\r\n    this.structures = obj.structures;\r\n    this.drawLayer = obj.drawLayer;\r\n\r\n    const project = obj.viewerConfig_project;\r\n    if (this.removeOverlap === null) {\r\n      this.removeOverlap = project.projectProperties[\"PreventOverlap\"];\r\n    }\r\n    if (this.tempRemoveOverlap === null) {\r\n      this.tempRemoveOverlap = project.projectProperties[\"PreventOverlap\"];\r\n    }\r\n    if (this.removeOverlapSame === null) {\r\n      this.removeOverlapSame = project.projectProperties[\"PreventOverlapSame\"];\r\n    }\r\n\r\n    // set removeOverlap\r\n    // save current settings (in tempRemoveOverlap) if structure gets changed\r\n    if (obj.selectedLayer === 0) {\r\n      this.activeTab = 0;\r\n      if (!this.noConfig) {\r\n        this.noConfig = true;\r\n        this.tempRemoveOverlap = this.removeOverlap;\r\n        this.tempRemoveOverlapSame = this.removeOverlapSame;\r\n        this.removeOverlap = false;\r\n        this.removeOverlapSame = false;\r\n        window.forceSidebarUpdate();\r\n      }\r\n    } else {\r\n      if (this.noConfig) {\r\n        this.noConfig = false;\r\n        this.removeOverlap = this.tempRemoveOverlap;\r\n        this.removeOverlapSame = this.tempRemoveOverlapSame;\r\n        window.forceSidebarUpdate();\r\n      }\r\n    }\r\n    if (this.activeTab === 1) {\r\n      if (typeof this.updateObjectMode === \"function\") {\r\n        this.updateObjectMode(true);\r\n      }\r\n    }\r\n  }\r\n\r\n  setPreviewRect() {}\r\n\r\n  getValidatedRegions(regions) {\r\n    let validatedRegions = regions.map((p) => {\r\n      return [\r\n        Math.max(0, Math.min(this.ome.sizeX, p[0])),\r\n        Math.max(0, Math.min(this.ome.sizeY, p[1])),\r\n      ];\r\n    });\r\n    return validatedRegions;\r\n  }\r\n\r\n  /** Edits the position and size of a ROI using its new coordinates.\r\n   *\r\n   * @param {Array} regions Array of coordninate arrays: [[x,y], ..., [x,y]]\r\n   */\r\n  editRoi(regions) {\r\n    if (this.selectedRoi === null) return;\r\n    let newRoi = null;\r\n\r\n    let historyItem = [];\r\n    let histId = this.structures[this.selectedIndex].id;\r\n    if (regions !== null) {\r\n      regions = regions.map((p) => {\r\n        return [\r\n          Math.max(0, Math.min(this.ome.sizeX, p[0])),\r\n          Math.max(0, Math.min(this.ome.sizeY, p[1])),\r\n        ];\r\n      });\r\n\r\n      newRoi = createRegionRoi(\r\n        this.getValidatedRegions(regions),\r\n        this.selectedRoi.color,\r\n        this.selectedRoi.isSubtype,\r\n        this.selectedRoi.subtypeName,\r\n        this.selectedRoi.fullyLoaded,\r\n        this.structures[this.selectedIndex].id,\r\n        true // isObject = true\r\n      );\r\n    }\r\n    if (newRoi !== null) {\r\n      this.lastRoi = newRoi;\r\n      this.roiLayers[this.selectedIndex].tree.insert(newRoi.treeItem);\r\n      historyItem.push({ add: true, id: histId, roi: newRoi });\r\n    }\r\n    if (typeof this.roiLayers[this.selectedIndex] === \"undefined\") return;\r\n\r\n    let layerIndex = this.roiLayers[\r\n      this.selectedIndex\r\n    ].layer.regionRois.findIndex((roi) => roi.uuid === this.selectedRoi.uuid);\r\n    this.roiLayers[this.selectedIndex].tree.remove(this.selectedRoi.treeItem);\r\n    historyItem.push({ add: false, id: histId, roi: this.selectedRoi });\r\n\r\n    if (layerIndex >= 0) {\r\n      if (newRoi === null) {\r\n        this.roiLayers[this.selectedIndex].layer.regionRois.splice(\r\n          layerIndex,\r\n          1\r\n        );\r\n      } else {\r\n        this.roiLayers[this.selectedIndex].layer.regionRois[layerIndex] =\r\n          newRoi;\r\n      }\r\n    }\r\n\r\n    this.lastRoi = newRoi;\r\n    this.selectedRoi = newRoi;\r\n    this.hoveredRoi = newRoi;\r\n\r\n    if (newRoi === null) {\r\n      this.selectedIndex = null;\r\n    }\r\n    window.projectHistory.add(historyItem);\r\n  }\r\n\r\n  selectNexRoi = () => {\r\n    const regionRois = this.roiLayers[this.selectedIndex].layer.regionRois;\r\n    let roiIdx = regionRois.findIndex(\r\n      (roi) => roi.uuid === this.selectedRoi.uuid\r\n    );\r\n    roiIdx = roiIdx + 1 >= regionRois.length ? 0 : roiIdx + 1;\r\n    this.selectedRoi = regionRois[roiIdx];\r\n    window.zoomToRect(this.selectedRoi.bounds);\r\n  };\r\n\r\n  rendererKeyDown(e) {\r\n    if (this.drawMode === \"edit\" && this.selectedRoi) {\r\n      let bounds = Object.assign({}, this.selectedRoi.bounds);\r\n      let editRoi = false;\r\n      let deleteRoi = false;\r\n      switch (e.key) {\r\n        case \"Tab\":\r\n          this.selectNexRoi();\r\n          e.preventDefault();\r\n          break;\r\n        case \"ArrowRight\":\r\n          if (!e.shiftKey) bounds.left++;\r\n          bounds.right++;\r\n          editRoi = true;\r\n          break;\r\n        case \"ArrowLeft\":\r\n          if (!e.shiftKey) bounds.left--;\r\n          bounds.right--;\r\n          editRoi = true;\r\n          break;\r\n        case \"ArrowUp\":\r\n          if (!e.shiftKey) bounds.top--;\r\n          bounds.bottom--;\r\n          editRoi = true;\r\n          break;\r\n        case \"ArrowDown\":\r\n          if (!e.shiftKey) bounds.top++;\r\n          bounds.bottom++;\r\n          editRoi = true;\r\n          break;\r\n        case \"Delete\":\r\n          editRoi = true;\r\n          deleteRoi = true;\r\n          break;\r\n        default:\r\n          break;\r\n      }\r\n      if (editRoi) {\r\n        let regions = null;\r\n        if (\r\n          bounds.left > 0 &&\r\n          bounds.top > 0 &&\r\n          bounds.right < this.ome.sizeX &&\r\n          bounds.bottom < this.ome.sizeY\r\n        ) {\r\n          if (!deleteRoi) {\r\n            regions = [\r\n              [bounds.left, bounds.top],\r\n              [bounds.right, bounds.top],\r\n              [bounds.right, bounds.bottom],\r\n              [bounds.left, bounds.bottom],\r\n              [bounds.left, bounds.top],\r\n            ];\r\n          }\r\n\r\n          this.editRoi(regions);\r\n        }\r\n      }\r\n    }\r\n  }\r\n\r\n  setClickedRoiSelected(p, event) {\r\n    let foundRoiResults = findRoi(\r\n      p,\r\n      this.roiLayers,\r\n      this.structures,\r\n      this.includeBaseROI\r\n    );\r\n    this.selectedIndex = foundRoiResults[0];\r\n    let roi = foundRoiResults[1];\r\n    if (roi && !roi.isObject) {\r\n      window.showWarningSnackbar(\"Can not be edited! (no object annotation)\");\r\n      this.selectedRoi = null;\r\n    } else {\r\n      this.selectedRoi = roi;\r\n      this.lastRoi = roi;\r\n      if (event.button === 2) {\r\n        this.editRoi(null); //delete roi\r\n      } else {\r\n        this.mouseDownPosition = p;\r\n        if (roi) {\r\n          if (this.resizeMode !== \"\") {\r\n            this.resizingStarted = this.resizeMode;\r\n          }\r\n          this.mouseDownRoi = roi;\r\n        }\r\n      }\r\n    }\r\n  }\r\n\r\n  /** Checks whether the cursor is hovering over an object.\r\n   *\r\n   * @param {Object} p x and y of cursor {x:, y: }\r\n   */\r\n  setHoveredRoi(p) {\r\n    let foundRoiResults = findRoi(\r\n      p,\r\n      this.roiLayers,\r\n      this.structures,\r\n      this.includeBaseROI\r\n    );\r\n    this.hoveredIndex = foundRoiResults[0];\r\n    let roi = foundRoiResults[1];\r\n    this.hoveredRoi = roi;\r\n  }\r\n\r\n  /** Handeling of mouse events.\r\n   *\r\n   * @param {MouseEvent} event\r\n   * @param {Object} p x and y of cursor {x:, y: }\r\n   * @param {String} color #012DEF\r\n   * @param {Bool} subtype Is the mouse over a subtype or not?\r\n   * @param {String} name Name of the structure the cursor is above.\r\n   * @param {Bool} positionInRoiLayer Is the cursor currently in a ROI Layer?\r\n   * @param {Bool} fullyLoaded\r\n   * @param {Int} parentLayer The id of the parentlayer of the structure the curson is above.\r\n   */\r\n  mouse(params) {\r\n    let { event, p, color, subtype, name, positionInRoiLayer, fullyLoaded } =\r\n      params;\r\n    // Rectangle tool in object mode, selected option duplicate.\r\n    if (this.activeTab === 1 && this.drawMode === \"duplicate\") {\r\n      if (event.type === \"mousedown\" && event.button === 0 && this.lastRoi) {\r\n        let rw = (this.lastRoi.bounds.right - this.lastRoi.bounds.left) / 2;\r\n        let rh = (this.lastRoi.bounds.bottom - this.lastRoi.bounds.top) / 2;\r\n        let regions = [\r\n          [p.x - rw, p.y - rh],\r\n          [p.x + rw, p.y - rh],\r\n          [p.x + rw, p.y + rh],\r\n          [p.x + rw, p.y + rh],\r\n          [p.x - rw, p.y - rh],\r\n        ];\r\n\r\n        let drawRegion = {\r\n          regions: [\r\n            createRegionRoi(\r\n              regions,\r\n              color,\r\n              subtype,\r\n              name,\r\n              fullyLoaded,\r\n              this.structures[this.originalSelectedLayer].id,\r\n              true\r\n            ),\r\n          ],\r\n          inverted: false,\r\n        };\r\n\r\n        let overlapRoiLayers = [];\r\n        if (this.removeOverlapSame) {\r\n          overlapRoiLayers.push(this.roiLayers[this.selectedLayer]);\r\n        }\r\n        if (this.removeOverlap) {\r\n          let siblingRoiLayers = findSiblingRoiLayers(\r\n            this.structures,\r\n            this.selectedLayer,\r\n            this.roiLayers\r\n          );\r\n          siblingRoiLayers.map((layer) => overlapRoiLayers.push(layer));\r\n        }\r\n        updateLayer(\r\n          this.layer,\r\n          drawRegion,\r\n          this.clear,\r\n          color,\r\n          subtype,\r\n          name,\r\n          this.roiLayers[this.selectedLayer].tree,\r\n          positionInRoiLayer,\r\n          fullyLoaded,\r\n          false,\r\n          this.roiLayers[this.parentLayer],\r\n          this.structures[this.originalSelectedLayer].id,\r\n          overlapRoiLayers,\r\n          this.clickedOnRoi,\r\n          true\r\n        );\r\n      }\r\n    }\r\n    // Rectangle tool in object mode, selected option edit or draw-while-hovering-over-an-object.\r\n    else if (\r\n      this.activeTab === 1 &&\r\n      (this.drawMode === \"edit\" ||\r\n        (this.drawMode === \"draw\" &&\r\n          this.hoveredRoi !== null &&\r\n          this.hoveredRoi.structureId ===\r\n            this.structures[this.selectedLayer].id))\r\n    ) {\r\n      // Click on hovered-over object\r\n      if (\r\n        event.type === \"mousedown\" &&\r\n        (event.button === 0 || event.button === 2)\r\n      ) {\r\n        this.setClickedRoiSelected(p, event);\r\n      }\r\n      // Move hovered-over object\r\n      else if (event.type === \"mousemove\") {\r\n        this.setHoveredRoi(p);\r\n\r\n        // move roi\r\n        if (\r\n          this.mouseDownPosition &&\r\n          this.mouseDownRoi &&\r\n          (this.mouseDownRoi.structureId ==\r\n            this.structures[this.selectedLayer].id ||\r\n            this.drawMode === \"edit\")\r\n        ) {\r\n          let deltaP = {\r\n            x: this.mouseDownPosition.x - p.x,\r\n            y: this.mouseDownPosition.y - p.y,\r\n          };\r\n          let regions = [];\r\n          // Resize Object\r\n          if (this.resizingStarted !== \"\") {\r\n            let bounds = {\r\n              left: this.resizingStarted.includes(\"left\")\r\n                ? this.mouseDownRoi.bounds.left - deltaP.x\r\n                : this.mouseDownRoi.bounds.left,\r\n              top: this.resizingStarted.includes(\"top\")\r\n                ? this.mouseDownRoi.bounds.top - deltaP.y\r\n                : this.mouseDownRoi.bounds.top,\r\n              right: this.resizingStarted.includes(\"right\")\r\n                ? this.mouseDownRoi.bounds.right - deltaP.x\r\n                : this.mouseDownRoi.bounds.right,\r\n              bottom: this.resizingStarted.includes(\"bottom\")\r\n                ? this.mouseDownRoi.bounds.bottom - deltaP.y\r\n                : this.mouseDownRoi.bounds.bottom,\r\n            };\r\n            bounds.left = Math.max(0, bounds.left);\r\n            bounds.top = Math.max(0, bounds.top);\r\n            bounds.right = Math.min(this.ome.sizeX, bounds.right);\r\n            bounds.bottom = Math.min(this.ome.sizeY, bounds.bottom);\r\n            regions = [\r\n              [bounds.left, bounds.top],\r\n              [bounds.right, bounds.top],\r\n              [bounds.right, bounds.bottom],\r\n              [bounds.left, bounds.bottom],\r\n              [bounds.left, bounds.top],\r\n            ];\r\n          }\r\n          // Move object\r\n          else {\r\n            regions = this.mouseDownRoi.regions[0].map((point) => {\r\n              return [point[0] - deltaP.x, point[1] - deltaP.y];\r\n            });\r\n          }\r\n          // Save changes to object\r\n          this.editRoi(regions);\r\n        }\r\n      }\r\n      // Release hovered-over object\r\n      if (event.type === \"mouseup\") {\r\n        this.mouseDownPosition = null;\r\n        this.resizingStarted = \"\";\r\n      }\r\n    }\r\n    // Rectangle tool in area or object mode, set starting point.\r\n    else if (\r\n      event.type === \"mousedown\" &&\r\n      (event.button === 0 || event.button === 2)\r\n    ) {\r\n      checkIfStructureHidden(\r\n        this.structures,\r\n        this.selectedLayer,\r\n        subtype,\r\n        name,\r\n        color\r\n      );\r\n      this.drawLayer.regionRois = [];\r\n      this.drawLayer.inverted = false;\r\n      // right mouse button -> clear\r\n      this.clear = event.button === 2;\r\n      this.drawLayer.clear = this.clear;\r\n\r\n      // update position history\r\n      this.startPoint = p;\r\n      this.points = [];\r\n      this.points.push([p.x, p.y]);\r\n\r\n      // set drawing flag\r\n      this.flag = true;\r\n\r\n      // check if mouse down is inside region? => exapand region\r\n      if (this.removeOverlapSame) {\r\n        this.clickedOnRoi = findClickedRoi(\r\n          p,\r\n          this.selectedLayer,\r\n          this.structures,\r\n          this.roiLayers,\r\n          this.includeBaseROI\r\n        );\r\n      }\r\n    }\r\n    // Rectangle tool in area or object mode, set end point.\r\n    else if (\r\n      event.type === \"mouseup\" ||\r\n      (this.flag && event.type === \"mouseleave\")\r\n    ) {\r\n      // release drawing flag\r\n      this.flag = false;\r\n      let drawRegion = {\r\n        regions: [],\r\n        inverted: false,\r\n      };\r\n      if (this.drawLayer.regionRois.length > 0) {\r\n        drawRegion.regions = [this.drawLayer.regionRois[0]];\r\n\r\n        let overlapRoiLayers = [];\r\n        if (this.removeOverlapSame) {\r\n          overlapRoiLayers.push(this.roiLayers[this.selectedLayer]);\r\n        }\r\n        if (this.removeOverlap) {\r\n          let siblingRoiLayers = findSiblingRoiLayers(\r\n            this.structures,\r\n            this.selectedLayer,\r\n            this.roiLayers\r\n          );\r\n          siblingRoiLayers.map((layer) => overlapRoiLayers.push(layer));\r\n        }\r\n\r\n        // Save last ROI for duplication\r\n        if (this.activeTab === 1) {\r\n          this.lastRoi =\r\n            this.drawLayer.regionRois[this.drawLayer.regionRois.length - 1];\r\n        }\r\n        updateLayer(\r\n          this.layer,\r\n          drawRegion,\r\n          this.clear,\r\n          color,\r\n          subtype,\r\n          name,\r\n          this.roiLayers[this.selectedLayer].tree,\r\n          positionInRoiLayer,\r\n          fullyLoaded,\r\n          false,\r\n          this.roiLayers[this.parentLayer],\r\n          this.structures[this.originalSelectedLayer].id,\r\n          overlapRoiLayers,\r\n          this.clickedOnRoi,\r\n          this.activeTab === 1 // defines if it should be treated as an object\r\n        );\r\n\r\n        this.drawLayer.regionRois = [];\r\n      }\r\n    }\r\n    // Rectangle tool in area or object mode, create rectangle by dragging.\r\n    else if (event.type === \"mousemove\") {\r\n      if (this.flag) {\r\n        let points = [];\r\n        points.push([this.startPoint.x, this.startPoint.y]);\r\n        points.push([p.x, this.startPoint.y]);\r\n        points.push([p.x, p.y]);\r\n        points.push([this.startPoint.x, p.y]);\r\n        points.push([this.startPoint.x, this.startPoint.y]);\r\n\r\n        let drawRegion = {\r\n          regions: [points],\r\n          inverted: false,\r\n        };\r\n\r\n        this.drawLayer.regionRois = []; //only one region will be drawn to the draw layer\r\n        updateDrawLayer(\r\n          this.drawLayer,\r\n          drawRegion,\r\n          false,\r\n          color,\r\n          subtype,\r\n          name\r\n        );\r\n      }\r\n      // Check if currently hovering over an object.\r\n      else {\r\n        this.setHoveredRoi(p);\r\n      }\r\n    }\r\n  }\r\n\r\n  highlightRoi(ctx, roi) {\r\n    // do not highlight if not in selected structure in draw mode\r\n    // do not highlight if not object annotation\r\n    // highlight all object annotations if in edit mode\r\n    if (\r\n      roi &&\r\n      roi.isObject &&\r\n      (this.drawMode === \"edit\" ||\r\n        roi.structureId == this.structures[this.selectedLayer].id)\r\n    ) {\r\n      ctx.globalAlpha = 0.2;\r\n      ctx.fillStyle = roi.isObject ? \"#000000\" : \"#ff0000\";\r\n      ctx.beginPath();\r\n      for (let points of roi.getRectRegions()) {\r\n        if (points[points.length - 2]) {\r\n          ctx.moveTo(\r\n            points[points.length - 2][0],\r\n            points[points.length - 2][1]\r\n          );\r\n          for (let i = 0; i < points.length; i++) {\r\n            ctx.lineTo(points[i][0], points[i][1]);\r\n          }\r\n        }\r\n      }\r\n      ctx.closePath();\r\n      ctx.fill();\r\n      ctx.globalAlpha = 1.0;\r\n    }\r\n  }\r\n\r\n  highlightResizeCorner(ctx, roi, p) {\r\n    // do not highlight resize corner if not in selected structure in draw mode\r\n    // do not highlight resize corner if not object annotation\r\n    // highlight resize corner for all object annotations if in edit mode\r\n    if (\r\n      roi &&\r\n      roi.isObject &&\r\n      (this.drawMode === \"edit\" ||\r\n        roi.structureId == this.structures[this.selectedLayer].id)\r\n    ) {\r\n      ctx.globalAlpha = 1.0;\r\n      ctx.fillStyle = \"#0000ff\";\r\n      let rb = roi.bounds;\r\n      let scaleFactor = 1 / ctx.getTransform().a;\r\n      let cornerSize = 20 * scaleFactor;\r\n      let roiWidth = roi.bounds.right - roi.bounds.left;\r\n      let roiHeight = roi.bounds.bottom - roi.bounds.top;\r\n      let x = roi.bounds.left;\r\n      let y = roi.bounds.top;\r\n\r\n      //no resizing if corners would hinder translation\r\n      if (cornerSize * 2.5 > roiWidth || cornerSize * 2.5 > roiHeight) {\r\n        this.resizeMode = \"\";\r\n        return;\r\n      }\r\n\r\n      //if mouse in bottom right corner\r\n      if (\r\n        !(\r\n          p.x < rb.left ||\r\n          p.x > rb.left + cornerSize ||\r\n          p.y < rb.top ||\r\n          p.y > rb.top + cornerSize\r\n        )\r\n      ) {\r\n        this.resizeMode = \"top_left\";\r\n      } else if (\r\n        !(\r\n          p.x < rb.right - cornerSize ||\r\n          p.x > rb.right ||\r\n          p.y < rb.top ||\r\n          p.y > rb.top + cornerSize\r\n        )\r\n      ) {\r\n        this.resizeMode = \"top_right\";\r\n        x = rb.right - cornerSize;\r\n      } else if (\r\n        !(\r\n          p.x < rb.right - cornerSize ||\r\n          p.x > rb.right ||\r\n          p.y < rb.bottom - cornerSize ||\r\n          p.y > rb.bottom\r\n        )\r\n      ) {\r\n        this.resizeMode = \"bottom_right\";\r\n        x = rb.right - cornerSize;\r\n        y = rb.bottom - cornerSize;\r\n      } else if (\r\n        !(\r\n          p.x < rb.left ||\r\n          p.x > rb.left + cornerSize ||\r\n          p.y < rb.bottom - cornerSize ||\r\n          p.y > rb.bottom\r\n        )\r\n      ) {\r\n        this.resizeMode = \"bottom_left\";\r\n        y = rb.bottom - cornerSize;\r\n      } else {\r\n        //mouse in right bottom corner\r\n        this.resizeMode = \"\";\r\n        return;\r\n      }\r\n      let points = [\r\n        [x, y],\r\n        [x + cornerSize, y],\r\n        [x + cornerSize, y + cornerSize],\r\n        [x, y + cornerSize],\r\n        [x, y],\r\n      ];\r\n      ctx.beginPath();\r\n      ctx.moveTo(points[0], points[1]);\r\n      for (let i = 0; i < points.length; i++) {\r\n        ctx.lineTo(points[i][0], points[i][1]);\r\n      }\r\n      ctx.closePath();\r\n      ctx.fill();\r\n      ctx.globalAlpha = 1.0;\r\n    }\r\n  }\r\n\r\n  drawCustomCursor(ctx, mousePosition) {\r\n    if (\r\n      (this.drawMode === \"draw\" && this.hoveredRoi === null) ||\r\n      (this.drawMode === \"draw\" &&\r\n        this.hoveredRoi &&\r\n        this.hoveredRoi.structureId !==\r\n          this.structures[this.selectedLayer].id) ||\r\n      this.activeTab === 0\r\n    ) {\r\n      ctx.beginPath();\r\n      ctx.globalAlpha = 1.0;\r\n      ctx.strokeStyle = this.isBrightfield ? \"#000000\" : \"#ffffff\";\r\n      ctx.beginPath();\r\n      ctx.moveTo(mousePosition.x, 0);\r\n      ctx.lineTo(mousePosition.x, 1000000);\r\n      ctx.moveTo(0, mousePosition.y);\r\n      ctx.lineTo(1000000, mousePosition.y);\r\n      ctx.stroke();\r\n      ctx.closePath();\r\n    } else if (this.lastRoi && this.drawMode === \"duplicate\") {\r\n      let p = mousePosition;\r\n      let rw = (this.lastRoi.bounds.right - this.lastRoi.bounds.left) / 2;\r\n      let rh = (this.lastRoi.bounds.bottom - this.lastRoi.bounds.top) / 2;\r\n      ctx.beginPath();\r\n      ctx.globalAlpha = 1.0;\r\n      ctx.strokeStyle = this.isBrightfield ? \"#000000\" : \"#ffffff\";\r\n      ctx.moveTo(\r\n        Math.max(0, Math.min(this.ome.sizeX, p.x - rw)),\r\n        Math.max(0, Math.min(this.ome.sizeY, p.y - rh))\r\n      );\r\n      ctx.lineTo(\r\n        Math.max(0, Math.min(this.ome.sizeX, p.x + rw)),\r\n        Math.max(0, Math.min(this.ome.sizeY, p.y - rh))\r\n      );\r\n      ctx.lineTo(\r\n        Math.max(0, Math.min(this.ome.sizeX, p.x + rw)),\r\n        Math.max(0, Math.min(this.ome.sizeY, p.y + rh))\r\n      );\r\n      ctx.lineTo(\r\n        Math.max(0, Math.min(this.ome.sizeX, p.x - rw)),\r\n        Math.max(0, Math.min(this.ome.sizeY, p.y + rh))\r\n      );\r\n      //ctx.lineTo(p.x + rw, p.y - rh);\r\n      ctx.closePath();\r\n      ctx.stroke();\r\n    }\r\n\r\n    if (this.activeTab === 1) {\r\n      this.highlightRoi(ctx, this.selectedRoi);\r\n      this.highlightRoi(ctx, this.hoveredRoi);\r\n      this.highlightResizeCorner(ctx, this.hoveredRoi, mousePosition);\r\n    }\r\n  }\r\n\r\n  handleChange = () => {\r\n    this.activeTab = this.activeTab === 0 ? 1 : 0;\r\n    if (typeof this.updateObjectMode === \"function\") {\r\n      this.updateObjectMode(this.activeTab === 1);\r\n    }\r\n    window.forceSidebarUpdate();\r\n  };\r\n\r\n  exit() {}\r\n\r\n  renderConfiguration() {\r\n    return (\r\n      <div>\r\n        <Typography variant=\"h6\">{this.name}:</Typography>\r\n        <React.Fragment>\r\n          <Tabs\r\n            variant=\"fullWidth\"\r\n            indicatorColor=\"primary\"\r\n            textColor=\"primary\"\r\n            value={this.activeTab}\r\n            onChange={this.handleChange}\r\n          >\r\n            <Tab label=\"Area\" />\r\n            <Tab label=\"Object\" />\r\n          </Tabs>\r\n          {this.activeTab === 0 && (\r\n            <OverlapConfigForm\r\n              removeOverlap={this.removeOverlap}\r\n              removeOverlapSame={this.removeOverlapSame}\r\n              onChangeRemoveOverlap={(e) => (this.removeOverlap = e)}\r\n              onChangeRemoveOverlapSame={(e) => (this.removeOverlapSame = e)}\r\n            />\r\n          )}\r\n          {this.activeTab === 1 && (\r\n            <React.Fragment>\r\n              <FormControl component=\"fieldset\">\r\n                <RadioGroup\r\n                  aria-label=\"drawMode\"\r\n                  name=\"drawMode\"\r\n                  value={this.drawMode}\r\n                  onChange={(e) => {\r\n                    this.drawMode = e.target.value;\r\n                    window.forceSidebarUpdate();\r\n                  }}\r\n                >\r\n                  <FormControlLabel\r\n                    value=\"draw\"\r\n                    control={<Radio />}\r\n                    label=\"Draw Object\"\r\n                  />\r\n                  <FormControlLabel\r\n                    value=\"edit\"\r\n                    control={<Radio />}\r\n                    label=\"Edit Object (arrows, arrows+Shift, Tab)\"\r\n                  />\r\n                  <FormControlLabel\r\n                    value=\"duplicate\"\r\n                    control={<Radio />}\r\n                    label=\"Duplicate last object size\"\r\n                    disabled={typeof this.lastRoi === \"undefined\"}\r\n                  />\r\n                </RadioGroup>\r\n              </FormControl>\r\n            </React.Fragment>\r\n          )}\r\n        </React.Fragment>\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nexport default RectangleTool;\r\n","import {\r\n  updateDrawLayer,\r\n  updateLayer,\r\n  findSiblingRoiLayers,\r\n  findSameLayer,\r\n  findClickedRoi,\r\n  lineArrayBuffer,\r\n  distance,\r\n} from \"../../utils/PolygonUtil\";\r\nimport { Button } from \"@mui/material\";\r\nimport { Typography, FormControl, FormLabel, Slider } from \"@mui/material\";\r\nimport Tool from \"./Tool\";\r\nimport React from \"react\";\r\nimport OverlapConfigForm from \"./ConfigForms/OverlapConfigForm\";\r\n\r\nclass RegionGrabCutTool extends Tool {\r\n  toolName = \"Region Grab Cut\";\r\n  noConfig = false;\r\n  flag = false;\r\n  removeOverlap = null;\r\n  removeOverlapSame = null;\r\n  tempRemoveOverlap = null;\r\n  tempRemoveOverlapSame = null;\r\n  threshold = 30;\r\n  penRadius = 5;\r\n  penOpacity = 1;\r\n  minPenRadius = 1;\r\n  maxPenRadius = 50;\r\n  line = [];\r\n  lines = [];\r\n  linePoly = {};\r\n  matline = [];\r\n\r\n  setLayer(obj) {\r\n    this.ome = obj.ome;\r\n    this.isBrightfield = obj.ome.channels[0].type === \"brightfield\";\r\n    this.ctx = obj.ctx; //context\r\n    this.canvas = obj.ctx.canvas; //canvas\r\n    this.layer = obj.layer;\r\n    this.roiLayers = obj.roiLayers;\r\n    let layerResults = findSameLayer(obj.structures, obj.selectedLayer);\r\n    this.selectedLayer = layerResults[0];\r\n    this.parentLayer = layerResults[1];\r\n    this.originalSelectedLayer = obj.selectedLayer;\r\n    this.structures = obj.structures;\r\n    this.drawLayer = obj.drawLayer;\r\n\r\n    const project = obj.viewerConfig_project;\r\n    if (this.removeOverlap === null) {\r\n      this.removeOverlap = project.projectProperties[\"PreventOverlap\"];\r\n    }\r\n    if (this.tempRemoveOverlap === null) {\r\n      this.tempRemoveOverlap = project.projectProperties[\"PreventOverlap\"];\r\n    }\r\n    if (this.removeOverlapSame === null) {\r\n      this.removeOverlapSame = project.projectProperties[\"PreventOverlapSame\"];\r\n    }\r\n\r\n    // set removeOverlap\r\n    // save current settings (in tempRemoveOverlap) if structure gets changed\r\n    if (obj.selectedLayer === 0) {\r\n      if (!this.noConfig) {\r\n        this.noConfig = true;\r\n        this.tempRemoveOverlap = this.removeOverlap;\r\n        this.tempRemoveOverlapSame = this.removeOverlapSame;\r\n        this.removeOverlap = false;\r\n        this.removeOverlapSame = false;\r\n        window.forceSidebarUpdate();\r\n      }\r\n    } else {\r\n      if (this.noConfig) {\r\n        this.noConfig = false;\r\n        this.removeOverlap = this.tempRemoveOverlap;\r\n        this.removeOverlapSame = this.tempRemoveOverlapSame;\r\n        window.forceSidebarUpdate();\r\n      }\r\n    }\r\n  }\r\n\r\n  setPreviewRect() {}\r\n\r\n  getPosition = () => {\r\n    return {\r\n      x: -this.ctx.getTransform().e,\r\n      y: -this.ctx.getTransform().f,\r\n    };\r\n  };\r\n\r\n  fitPointToImage = (p) => {\r\n    if (this.ctx) {\r\n      this.scale = this.ctx.getTransform().a;\r\n    }\r\n    return {\r\n      x: parseInt(p.x * this.scale - this.getPosition().x, 10),\r\n      y: parseInt(p.y * this.scale - this.getPosition().y, 10),\r\n    };\r\n  };\r\n\r\n  getPolygonsWithOpenCV = () => {\r\n    let p1 = this.fitPointToImage(this.startPoint);\r\n    let p2 = this.fitPointToImage(this.endPoint);\r\n    let tlp = { x: Math.min(p1.x, p2.x), y: Math.min(p1.y, p2.y) };\r\n\r\n    let w = Math.abs(p1.x - p2.x);\r\n    let h = Math.abs(p1.y - p2.y);\r\n\r\n    const cv = window.cv;\r\n    let ctx = this.canvas.getContext(\"2d\");\r\n    let imageData = ctx.getImageData(\r\n      0,\r\n      0,\r\n      this.canvas.width,\r\n      this.canvas.height\r\n    );\r\n\r\n    let resultImageData = imageData;\r\n    let src = cv.matFromImageData(resultImageData);\r\n    let rect1 = new cv.Rect(tlp.x, tlp.y, w, h);\r\n    src = src.roi(rect1);\r\n    let resizeMultiplier = 200 / w;\r\n    if (resizeMultiplier > 1) {\r\n      resizeMultiplier = 1;\r\n    }\r\n    let originalSize = new cv.Size(w, h);\r\n    w = parseInt(w * resizeMultiplier, 10);\r\n    h = parseInt(h * resizeMultiplier, 10);\r\n    let workingSize = new cv.Size(w, h);\r\n    cv.resize(src, src, workingSize, 0, 0, cv.INTER_AREA);\r\n\r\n    let rect = new cv.Rect(2, 2, w - 4, h - 4);\r\n    let point1 = new cv.Point(rect.x, rect.y);\r\n    let point2 = new cv.Point(rect.x + rect.width, rect.y + rect.height);\r\n\r\n    cv.cvtColor(src, src, cv.COLOR_RGBA2RGB, 0);\r\n    let mask = cv.Mat.zeros(h, w, cv.CV_8U);\r\n    let obvFgColor = new cv.Scalar(cv.GC_FGD);\r\n    let obvBgColor = new cv.Scalar(cv.GC_BGD);\r\n    let posFgColor = new cv.Scalar(cv.GC_PR_FGD);\r\n    let fgP1 = new cv.Point(parseInt(w / 2, 10) - 10, parseInt(h / 2, 10) - 10);\r\n    let fgP2 = new cv.Point(parseInt(w / 2, 10) + 10, parseInt(h / 2, 10) + 10);\r\n    //todo: another rect with obv bg - spectated rect\r\n    cv.rectangle(mask, point1, point2, posFgColor, -1); // whole image (todo: drawn  rect)\r\n    cv.rectangle(mask, fgP1, fgP2, obvFgColor, -1); //small rectangle in the middle\r\n    //todo draw obv bg / draw obv fg\r\n\r\n    let wDrawn = Math.abs(this.startPoint.x - this.endPoint.x);\r\n    let scale = wDrawn / w;\r\n\r\n    for (let p of this.matline) {\r\n      let point = this.fitPointToImage({ x: p.x, y: p.y });\r\n      let center = new cv.Point(\r\n        (point.x - tlp.x) * resizeMultiplier,\r\n        (point.y - tlp.y) * resizeMultiplier\r\n      );\r\n      let color = p.color == \"#ff0000\" ? obvBgColor : obvFgColor;\r\n      cv.circle(mask, center, parseInt(this.penRadius / scale, 10), color, -1);\r\n    }\r\n\r\n    let bgdModel = new cv.Mat();\r\n    let fgdModel = new cv.Mat();\r\n    cv.grabCut(src, mask, rect, bgdModel, fgdModel, 1, cv.GC_INIT_WITH_MASK);\r\n    // // draw foreground\r\n    for (let i = 0; i < src.rows; i++) {\r\n      for (let j = 0; j < src.cols; j++) {\r\n        if (mask.ucharPtr(i, j)[0] == 0 || mask.ucharPtr(i, j)[0] == 2) {\r\n          src.ucharPtr(i, j)[0] = 0;\r\n          src.ucharPtr(i, j)[1] = 0;\r\n          src.ucharPtr(i, j)[2] = 0;\r\n        } else {\r\n          src.ucharPtr(i, j)[0] = 255;\r\n          src.ucharPtr(i, j)[1] = 255;\r\n          src.ucharPtr(i, j)[2] = 255;\r\n        }\r\n      }\r\n    }\r\n\r\n    // // show mask for debuggins\r\n    // cv.imshow(\"outputCanvas\", testmask);\r\n\r\n    cv.resize(src, src, originalSize, 0, 0, cv.INTER_AREA);\r\n    cv.cvtColor(src, src, cv.COLOR_RGBA2GRAY, 0);\r\n\r\n    cv.threshold(src, src, 0, 200, cv.THRESH_BINARY);\r\n    let contours = new cv.MatVector();\r\n    let hierarchy = new cv.Mat();\r\n\r\n    cv.findContours(\r\n      src,\r\n      contours,\r\n      hierarchy,\r\n      cv.RETR_CCOMP,\r\n      cv.CHAIN_APPROX_SIMPLE\r\n    );\r\n\r\n    let polygons = [];\r\n    if (this.ctx) {\r\n      this.scale = this.ctx.getTransform().a;\r\n    }\r\n    for (let i = 0; i < contours.size(); ++i) {\r\n      let cnt = contours.get(i);\r\n      if (cv.contourArea(cnt) < 100) continue;\r\n      let polygon = [];\r\n      // console.log(cnt);\r\n      // let counter = 0;\r\n      for (let i = 0; i < cnt.rows; i++) {\r\n        let point = new cv.Point(cnt.data32S[i * 2], cnt.data32S[i * 2 + 1]);\r\n        polygon.push([\r\n          (tlp.x + point.x + this.getPosition().x) / this.scale,\r\n          (tlp.y + point.y + this.getPosition().y) / this.scale,\r\n        ]);\r\n      }\r\n      polygons.push(polygon);\r\n    }\r\n\r\n    // cleanup\r\n    mask.delete();\r\n    bgdModel.delete();\r\n    fgdModel.delete();\r\n    src.delete();\r\n\r\n    return polygons;\r\n    // return [];\r\n  };\r\n\r\n  removeCenteredObject = () => {\r\n    if (this.startPoint === null || this.endPoint === null) return;\r\n    let centerPoint = {\r\n      x: parseInt((this.startPoint.x + this.endPoint.x) / 2),\r\n      y: parseInt((this.startPoint.y + this.endPoint.y) / 2),\r\n    };\r\n    let centeredRoi = findClickedRoi(\r\n      centerPoint,\r\n      this.selectedLayer,\r\n      this.structures,\r\n      this.roiLayers,\r\n      this.includeBaseROI\r\n    );\r\n    let roiIdx = this.roiLayers[this.selectedLayer].layer.regionRois.findIndex(\r\n      (roi) => roi.uuid === centeredRoi.uuid\r\n    );\r\n    if (roiIdx >= 0) {\r\n      this.roiLayers[this.selectedLayer].layer.regionRois.splice(roiIdx, 1);\r\n      this.roiLayers[this.selectedLayer].tree.clear();\r\n      this.roiLayers[this.selectedLayer].tree.load(\r\n        this.roiLayers[this.selectedLayer].layer.regionRois.map(\r\n          (item) => item.treeItem\r\n        )\r\n      );\r\n    }\r\n  };\r\n\r\n  addPoint = (event, p) => {\r\n    let eventPoint = { x: event.clientX, y: event.clientY };\r\n    if (this.line.length < 3) {\r\n      this.line.push([p.x, p.y]);\r\n      this.lastEventPoint = eventPoint;\r\n    } else {\r\n      const dist = distance(this.lastEventPoint, eventPoint);\r\n      if (dist < 10) {\r\n        this.line[this.line.length - 1] = [p.x, p.y];\r\n      } else {\r\n        this.line.push([p.x, p.y]);\r\n        this.lastEventPoint = eventPoint;\r\n      }\r\n    }\r\n  };\r\n\r\n  updateDrawing = () => {\r\n    this.renderer.drawVisibleImage();\r\n\r\n    this.polygons = this.getPolygonsWithOpenCV();\r\n\r\n    this.drawLayer.regionRois = []; //only one region will be drawn to the draw layer\r\n    this.drawRegion = {\r\n      regions: this.polygons.map((polygon) => {\r\n        return polygon;\r\n      }),\r\n      inverted: false,\r\n    };\r\n    this.drawLayer.clear = this.clear;\r\n    updateDrawLayer(\r\n      this.drawLayer,\r\n      this.drawRegion,\r\n      false,\r\n      this.color,\r\n      this.subtype,\r\n      this.name\r\n    );\r\n  };\r\n\r\n  getTopLeftPoint = () => {\r\n    return {\r\n      x: Math.min(this.startPoint.x, this.endPoint.x),\r\n      y: Math.min(this.startPoint.y, this.endPoint.y),\r\n    };\r\n  };\r\n\r\n  getBottomRightPoint = () => {\r\n    return {\r\n      x: Math.max(this.startPoint.x, this.endPoint.x),\r\n      y: Math.max(this.startPoint.y, this.endPoint.y),\r\n    };\r\n  };\r\n\r\n  mouse(params) {\r\n    try {\r\n      let {\r\n        event,\r\n        p,\r\n        color,\r\n        subtype,\r\n        name,\r\n        positionInRoiLayer,\r\n        fullyLoaded,\r\n        renderer,\r\n      } = params;\r\n      this.color = color;\r\n      this.subtype = subtype;\r\n      this.name = name;\r\n      this.positionInRoiLayer = positionInRoiLayer;\r\n      this.fullyLoaded = fullyLoaded;\r\n      this.renderer = renderer;\r\n      if (\r\n        event.type === \"mousedown\" &&\r\n        (event.button === 0 || event.button === 2)\r\n      ) {\r\n        if (this.isPointOutsideRect(p)) {\r\n          this.flag = true;\r\n          this.startPoint = p;\r\n          this.endPoint = p;\r\n          this.lines = [];\r\n        } else if (!this.flag) {\r\n          this.lineFlag = true;\r\n          this.obvColor = event.button === 0 ? \"#00ff00\" : \"#ff0000\";\r\n          this.line = [[p.x, p.y]];\r\n        }\r\n      } else if (event.type === \"mousemove\" && (this.flag || this.lineFlag)) {\r\n        if (this.isDrawingpointInsideRect(p) && this.lineFlag) {\r\n          this.matline.push({\r\n            x: p.x,\r\n            y: p.y,\r\n            color: this.obvColor,\r\n            rad: this.penRadius,\r\n          });\r\n          this.addPoint(event, p);\r\n          this.linePoly = {\r\n            l: lineArrayBuffer(\r\n              this.line,\r\n              this.penRadius,\r\n              this.ome.sizeX,\r\n              this.ome.sizeY\r\n            ),\r\n            color: this.obvColor,\r\n          };\r\n        } else if (!this.lineFlag) {\r\n          this.endPoint = p;\r\n        }\r\n      } else if (\r\n        event.type === \"mouseup\" ||\r\n        ((this.flag || this.lineFlag) && event.type === \"mouseleave\")\r\n      ) {\r\n        if (this.isPointOutsideRect(p) && this.lineFlag) {\r\n          this.lineFlag = false;\r\n          this.linePoly = {};\r\n        } else if (this.isDrawingpointInsideRect(p)) {\r\n          this.lineFlag = false;\r\n          this.addPoint(event, p);\r\n          this.linePoly = {\r\n            l: lineArrayBuffer(\r\n              this.line,\r\n              this.penRadius,\r\n              this.ome.sizeX,\r\n              this.ome.sizeY\r\n            ),\r\n            color: this.obvColor,\r\n          };\r\n          this.lines.push(this.linePoly);\r\n          this.linePoly = {};\r\n          this.line = [];\r\n          try {\r\n            this.updateDrawing();\r\n          } catch (e) {\r\n            console.log(\"error:\", e);\r\n            window.showWarningSnackbar(\r\n              \"Error, To Close! Rectangle Not Visible\"\r\n            );\r\n            let tlp = this.getTopLeftPoint();\r\n            let w = Math.abs(this.startPoint.x - this.endPoint.x);\r\n            let h = Math.abs(this.startPoint.y - this.endPoint.y);\r\n            let rect = {\r\n              left: tlp.x + w * 0.25,\r\n              top: tlp.y + h * 0.25,\r\n              right: tlp.x + w - w * 0.25,\r\n              bottom: tlp.y + h - h * 0.25,\r\n            };\r\n            window.zoomToRect(rect);\r\n            window.forceSidebarUpdate();\r\n          }\r\n        } else if (this.flag) {\r\n          this.clear = event.button === 2;\r\n          this.endPoint = p;\r\n          this.flag = false;\r\n          try {\r\n            this.updateDrawing();\r\n          } catch (e) {\r\n            console.log(\"error:\", e);\r\n            window.showWarningSnackbar(\"Error, Rectangle too small\");\r\n            this.drawLayer.regionRois = [];\r\n          }\r\n        }\r\n      }\r\n    } catch (e) {\r\n      console.log(\"error:\", e);\r\n      window.showWarningSnackbar(\"Error, try again!\");\r\n    }\r\n  }\r\n\r\n  isPointOutsideRect = (p) => {\r\n    let isOutside = true;\r\n    if (this.startPoint && this.endPoint) {\r\n      let tlp = this.getTopLeftPoint();\r\n      let brp = this.getBottomRightPoint();\r\n      isOutside = p.x < tlp.x || p.x > brp.x || p.y < tlp.y || p.y > brp.y;\r\n    }\r\n    return isOutside;\r\n  };\r\n\r\n  isDrawingpointInsideRect = (p) => {\r\n    let isInside = false;\r\n    if (this.startPoint && this.endPoint) {\r\n      let tlp = this.getTopLeftPoint();\r\n      let brp = this.getBottomRightPoint();\r\n      isInside =\r\n        p.x - this.penRadius > tlp.x &&\r\n        p.x + this.penRadius < brp.x &&\r\n        p.y - this.penRadius > tlp.y &&\r\n        p.y + this.penRadius < brp.y;\r\n    }\r\n    return isInside;\r\n  };\r\n\r\n  drawCustomCursor(ctx, mousePosition) {\r\n    if (this.startPoint && this.endPoint) {\r\n      const ctx = this.ctx;\r\n      let topLeftPoint = this.getTopLeftPoint();\r\n      let w = Math.abs(this.startPoint.x - this.endPoint.x);\r\n      let h = Math.abs(this.startPoint.y - this.endPoint.y);\r\n      if (ctx) {\r\n        let scale = ctx.getTransform().a;\r\n        ctx.beginPath();\r\n        ctx.globalAlpha = 1.0;\r\n        ctx.strokeStyle = \"#0673C1\";\r\n        ctx.lineWidth = 4 / scale;\r\n        ctx.rect(topLeftPoint.x, topLeftPoint.y, w, h);\r\n        ctx.stroke();\r\n        ctx.strokeStyle = \"#ffffff\";\r\n        ctx.lineWidth = 2 / scale;\r\n        ctx.rect(topLeftPoint.x, topLeftPoint.y, w, h);\r\n        ctx.stroke();\r\n        ctx.closePath();\r\n\r\n        ctx.beginPath();\r\n        if (Object.keys(this.linePoly).length > 0) {\r\n          for (let points of this.linePoly.l.geometry.coordinates) {\r\n            ctx.fillStyle = this.linePoly.color;\r\n            ctx.globalAlpha = 1.0;\r\n            if (points[points.length - 1]) {\r\n              ctx.moveTo(\r\n                points[points.length - 1][0],\r\n                points[points.length - 1][1]\r\n              );\r\n              for (let i = 0; i < points.length; i++) {\r\n                ctx.lineTo(points[i][0], points[i][1]);\r\n              }\r\n            }\r\n          }\r\n        }\r\n        ctx.fill();\r\n        ctx.closePath();\r\n\r\n        if (this.lines.length > 0) {\r\n          for (let line of this.lines) {\r\n            ctx.beginPath();\r\n            for (let points of line.l.geometry.coordinates) {\r\n              ctx.fillStyle = line.color;\r\n              ctx.globalAlpha = this.penOpacity;\r\n              if (points[points.length - 1]) {\r\n                ctx.moveTo(\r\n                  points[points.length - 1][0],\r\n                  points[points.length - 1][1]\r\n                );\r\n                for (let i = 0; i < points.length; i++) {\r\n                  ctx.lineTo(points[i][0], points[i][1]);\r\n                }\r\n              }\r\n            }\r\n            ctx.fill(\"evenodd\");\r\n            ctx.closePath();\r\n          }\r\n        }\r\n\r\n        ctx.globalAlpha = 1.0;\r\n      }\r\n    }\r\n\r\n    if (this.isPointOutsideRect(mousePosition)) {\r\n      ctx.beginPath();\r\n      ctx.globalAlpha = 1.0;\r\n      ctx.strokeStyle = this.isBrightfield ? \"#000000\" : \"#ffffff\";\r\n      ctx.beginPath();\r\n      ctx.moveTo(mousePosition.x, 0);\r\n      ctx.lineTo(mousePosition.x, 1000000);\r\n      ctx.moveTo(0, mousePosition.y);\r\n      ctx.lineTo(1000000, mousePosition.y);\r\n      ctx.stroke();\r\n      ctx.closePath();\r\n    } else if (this.isDrawingpointInsideRect(mousePosition)) {\r\n      ctx.beginPath();\r\n      ctx.globalAlpha = 1.0;\r\n      ctx.strokeStyle = this.isBrightfield ? \"#000000\" : \"#ffffff\";\r\n      ctx.beginPath();\r\n      ctx.arc(mousePosition.x, mousePosition.y, this.penRadius, 0, 2 * Math.PI);\r\n      ctx.stroke();\r\n      ctx.closePath();\r\n    }\r\n  }\r\n\r\n  onKeyDown(e) {\r\n    // enter key\r\n    if (e.code === \"Enter\") {\r\n      this.onApply();\r\n    }\r\n    let delta = Math.max(1, parseInt(this.penRadius * 0.05, 10));\r\n    if (e.code === \"KeyS\") {\r\n      this.penRadius -= delta;\r\n    } else if (e.code === \"KeyW\") {\r\n      this.penRadius += delta;\r\n    }\r\n    if (this.penRadius < this.minPenRadius) {\r\n      this.penRadius = this.minPenRadius;\r\n    }\r\n    if (this.penRadius > this.maxPenRadius) {\r\n      this.penRadius = this.maxPenRadius;\r\n    }\r\n    window.forceSidebarUpdate();\r\n  }\r\n\r\n  onApply = () => {\r\n    if (!this.clear) {\r\n      this.removeCenteredObject();\r\n    }\r\n\r\n    this.drawRegion.regions = [];\r\n    if (this.drawLayer.regionRois.length > 0) {\r\n      this.drawRegion.regions = this.drawLayer.regionRois;\r\n\r\n      // soll der selected layer sein\r\n      let overlapRoiLayers = [];\r\n      if (this.removeOverlapSame) {\r\n        overlapRoiLayers.push(this.roiLayers[this.selectedLayer]);\r\n      }\r\n      if (this.removeOverlap) {\r\n        let siblingRoiLayers = findSiblingRoiLayers(\r\n          this.structures,\r\n          this.selectedLayer,\r\n          this.roiLayers\r\n        );\r\n        siblingRoiLayers.map((layer) => overlapRoiLayers.push(layer));\r\n      }\r\n\r\n      updateLayer(\r\n        this.layer,\r\n        this.drawRegion,\r\n        this.clear,\r\n        this.color,\r\n        this.subtype,\r\n        this.name,\r\n        this.roiLayers[this.selectedLayer].tree,\r\n        this.positionInRoiLayer,\r\n        this.fullyLoaded,\r\n        false,\r\n        this.roiLayers[this.parentLayer],\r\n        this.structures[this.originalSelectedLayer].id,\r\n        overlapRoiLayers,\r\n        this.clickedOnRoi\r\n      );\r\n      this.drawLayer.regionRois = [];\r\n    }\r\n    this.resetViuals();\r\n  };\r\n\r\n  resetViuals = () => {\r\n    this.lines = [];\r\n    this.linePoly = {};\r\n    this.matline = [];\r\n    this.startPoint = null;\r\n    this.endPoint = null;\r\n  };\r\n\r\n  exit() {}\r\n\r\n  renderConfiguration() {\r\n    return (\r\n      <div style={{ margin: \"12px\" }}>\r\n        {/* canvas for debugging */}\r\n        {/* <canvas id=\"outputCanvas\"></canvas> */}\r\n        <Typography variant=\"h6\">{this.toolName}:</Typography>\r\n        <FormControl component=\"fieldset\" fullWidth>\r\n          <FormLabel component=\"legend\">\r\n            {\"Threshold: \" + this.threshold}\r\n          </FormLabel>\r\n          <Slider\r\n            min={1}\r\n            max={50}\r\n            value={this.threshold}\r\n            onChange={(e, v) => {\r\n              this.threshold = v;\r\n              window.forceSidebarUpdate();\r\n            }}\r\n            onChangeCommitted={() => {\r\n              this.updateDrawing();\r\n            }}\r\n          />\r\n        </FormControl>\r\n        <FormControl component=\"fieldset\" fullWidth>\r\n          <FormLabel component=\"legend\">\r\n            {\"Line thickness = \" + this.penRadius + \" (smaller: S, wider: W)\"}\r\n          </FormLabel>\r\n          <Slider\r\n            min={this.minPenRadius}\r\n            max={this.maxPenRadius}\r\n            value={this.penRadius}\r\n            onChange={(e, v) => {\r\n              this.penRadius = v;\r\n              window.forceSidebarUpdate();\r\n            }}\r\n          />\r\n        </FormControl>\r\n        <FormControl component=\"fieldset\" fullWidth>\r\n          <FormLabel component=\"legend\">\r\n            {\"Line opacity = \" + this.penOpacity}\r\n          </FormLabel>\r\n          <Slider\r\n            min={1}\r\n            max={10}\r\n            value={this.penOpacity * 10}\r\n            onChange={(e, v) => {\r\n              this.penOpacity = v / 10;\r\n              window.forceSidebarUpdate();\r\n            }}\r\n          />\r\n        </FormControl>\r\n        <OverlapConfigForm\r\n          removeOverlap={this.removeOverlap}\r\n          removeOverlapSame={this.removeOverlapSame}\r\n          onChangeRemoveOverlap={(e) => (this.removeOverlap = e)}\r\n          onChangeRemoveOverlapSame={(e) => (this.removeOverlapSame = e)}\r\n        />\r\n        <Button\r\n          disabled={this.drawLayer.regionRois.length === 0}\r\n          style={{ marginTop: \"5px\" }}\r\n          fullWidth\r\n          variant=\"contained\"\r\n          color=\"primary\"\r\n          onClick={this.onApply}\r\n        >\r\n          Apply [Enter]\r\n        </Button>\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nexport default RegionGrabCutTool;\r\n","import {\r\n  updateDrawLayer,\r\n  updateLayer,\r\n  findSiblingRoiLayers,\r\n  findSameLayer,\r\n} from \"../../utils/PolygonUtil\";\r\nimport OverlapConfigForm from \"./ConfigForms/OverlapConfigForm\";\r\n\r\nimport {\r\n  Typography,\r\n  FormControl,\r\n  FormLabel,\r\n  Slider,\r\n  Button,\r\n} from \"@mui/material\";\r\nimport Tool from \"./Tool\";\r\nimport React from \"react\";\r\n\r\nclass RegionGrowingTool extends Tool {\r\n  toolName = \"Region Growing\";\r\n  noConfig = false;\r\n  flag = false;\r\n  threshold = 30;\r\n  buffer = 0;\r\n  removeOverlap = null;\r\n  removeOverlapSame = null;\r\n  tempRemoveOverlap = null;\r\n  tempRemoveOverlapSame = null;\r\n\r\n  setLayer(obj) {\r\n    this.ctx = obj.ctx; //context\r\n    this.canvas = obj.ctx.canvas; //canvas\r\n    this.layer = obj.layer;\r\n    this.roiLayers = obj.roiLayers;\r\n    let layerResults = findSameLayer(obj.structures, obj.selectedLayer);\r\n    this.selectedLayer = layerResults[0];\r\n    this.parentLayer = layerResults[1];\r\n    this.originalSelectedLayer = obj.selectedLayer;\r\n    this.structures = obj.structures;\r\n    this.drawLayer = obj.drawLayer;\r\n    this.scale = this.ctx ? this.ctx.getTransform().a : 1;\r\n\r\n    const project = obj.viewerConfig_project;\r\n    if (this.removeOverlap === null) {\r\n      this.removeOverlap = project.projectProperties[\"PreventOverlap\"];\r\n    }\r\n    if (this.tempRemoveOverlap === null) {\r\n      this.tempRemoveOverlap = project.projectProperties[\"PreventOverlap\"];\r\n    }\r\n    if (this.removeOverlapSame === null) {\r\n      this.removeOverlapSame = project.projectProperties[\"PreventOverlapSame\"];\r\n    }\r\n\r\n    // set removeOverlap\r\n    // save current settings (in tempRemoveOverlap) if structure gets changed\r\n    if (obj.selectedLayer === 0) {\r\n      if (!this.noConfig) {\r\n        this.noConfig = true;\r\n        this.tempRemoveOverlap = this.removeOverlap;\r\n        this.removeOverlap = false;\r\n        window.forceSidebarUpdate();\r\n      }\r\n    } else {\r\n      if (this.noConfig) {\r\n        this.noConfig = false;\r\n        this.removeOverlap = this.tempRemoveOverlap;\r\n        window.forceSidebarUpdate();\r\n      }\r\n    }\r\n  }\r\n\r\n  setPreviewRect() {}\r\n\r\n  next4Edges(edge) {\r\n    const x = edge[0];\r\n    const y = edge[1];\r\n    return [\r\n      [x + 1, y],\r\n      [x - 1, y],\r\n      [x, y + 1],\r\n      [x, y - 1],\r\n    ];\r\n  }\r\n\r\n  growRegion = (image, x, y) => {\r\n    let seed = [parseInt(x, 10), parseInt(y, 10)];\r\n    // seed = [10, 10];\r\n    const delta = parseInt(this.threshold); //delta = threshold slider\r\n    const width = image.width;\r\n    const height = image.height;\r\n    const inputData = image.data;\r\n    const outputData = new Uint8ClampedArray(new ImageData(width, height).data);\r\n    const seedIdx = (seed[1] * width + seed[0]) * 4;\r\n    const seedR = inputData[seedIdx];\r\n    const seedG = inputData[seedIdx + 1];\r\n    const seedB = inputData[seedIdx + 2];\r\n    let edge = [seed];\r\n    while (edge.length) {\r\n      const newedge = [];\r\n      for (let i = 0, ii = edge.length; i < ii; i++) {\r\n        // As noted in the Raster source constructor, this function is provided\r\n        // using the `lib` option. Other functions will NOT be visible unless\r\n        // provided using the `lib` option.\r\n        const next = this.next4Edges(edge[i]);\r\n        for (let j = 0, jj = next.length; j < jj; j++) {\r\n          const s = next[j][0];\r\n          const t = next[j][1];\r\n          if (s >= 0 && s < width && t >= 0 && t < height) {\r\n            const ci = (t * width + s) * 4;\r\n            const cr = inputData[ci];\r\n            const cg = inputData[ci + 1];\r\n            const cb = inputData[ci + 2];\r\n            const ca = inputData[ci + 3];\r\n            // if alpha is zero, carry on\r\n            if (ca === 0) {\r\n              continue;\r\n            }\r\n            if (\r\n              Math.abs(seedR - cr) < delta &&\r\n              Math.abs(seedG - cg) < delta &&\r\n              Math.abs(seedB - cb) < delta\r\n            ) {\r\n              outputData[ci] = 255;\r\n              outputData[ci + 1] = 0;\r\n              outputData[ci + 2] = 0;\r\n              outputData[ci + 3] = 255;\r\n              newedge.push([s, t]);\r\n            }\r\n            // mark as visited\r\n            inputData[ci + 3] = 0;\r\n          }\r\n        }\r\n      }\r\n      edge = newedge;\r\n    }\r\n    return { data: outputData, width: width, height: height };\r\n  };\r\n\r\n  getPosition = () => {\r\n    return {\r\n      x: -this.ctx.getTransform().e,\r\n      y: -this.ctx.getTransform().f,\r\n    };\r\n  };\r\n\r\n  getPolygonsWithOpenCV = (p) => {\r\n    const cv = window.cv;\r\n    let ctx = this.canvas.getContext(\"2d\");\r\n    let imageData = ctx.getImageData(\r\n      0,\r\n      0,\r\n      this.canvas.width,\r\n      this.canvas.height\r\n    );\r\n\r\n    let growResult = this.growRegion(imageData, p.x, p.y);\r\n    let resultImageData = new ImageData(\r\n      growResult.data,\r\n      this.canvas.width,\r\n      this.canvas.height\r\n    );\r\n    let src = cv.matFromImageData(resultImageData);\r\n\r\n    // let dst = new cv.Mat();\r\n    let rgbaPlanes = new cv.MatVector();\r\n    cv.split(src, rgbaPlanes);\r\n    let R = rgbaPlanes.get(0);\r\n    cv.threshold(R, R, 0, 200, cv.THRESH_BINARY);\r\n    let contours = new cv.MatVector();\r\n    let hierarchy = new cv.Mat();\r\n\r\n    cv.findContours(\r\n      R,\r\n      contours,\r\n      hierarchy,\r\n      cv.RETR_CCOMP,\r\n      cv.CHAIN_APPROX_SIMPLE\r\n    );\r\n    let polygons = [];\r\n    for (let i = 0; i < contours.size(); ++i) {\r\n      let cnt = contours.get(i);\r\n      if (cv.contourArea(cnt) < 100) continue;\r\n      let polygon = [];\r\n      for (let i = 0; i < cnt.rows; i++) {\r\n        let point = new cv.Point(cnt.data32S[i * 2], cnt.data32S[i * 2 + 1]);\r\n        polygon.push([\r\n          (point.x + this.getPosition().x) / this.scale,\r\n          (point.y + this.getPosition().y) / this.scale,\r\n        ]);\r\n      }\r\n      polygons.push(polygon);\r\n    }\r\n\r\n    // cleanup\r\n    hierarchy.delete();\r\n    src.delete();\r\n\r\n    return polygons;\r\n  };\r\n\r\n  updateDrawing = (p) => {\r\n    this.renderer.drawVisibleImage();\r\n    const scale = this.scale;\r\n\r\n    // map point to image fit corresponding pixel in visible image\r\n    p = {\r\n      x: parseInt(p.x * scale - this.getPosition().x, 10),\r\n      y: parseInt(p.y * scale - this.getPosition().y, 10),\r\n    };\r\n\r\n    let polygons = this.getPolygonsWithOpenCV(p);\r\n\r\n    this.drawLayer.regionRois = []; //only one region will be drawn to the draw layer\r\n    let drawRegion = {\r\n      regions: polygons.map((polygon) => {\r\n        return polygon;\r\n      }),\r\n      inverted: false,\r\n    };\r\n    this.drawLayer.clear = this.clear;\r\n    updateDrawLayer(\r\n      this.drawLayer,\r\n      drawRegion,\r\n      this.clear,\r\n      this.color,\r\n      this.subtype,\r\n      this.name,\r\n      this.buffer\r\n    );\r\n    window.forceSidebarUpdate();\r\n  };\r\n\r\n  onApply = () => {\r\n    // release drawing flag\r\n    this.flag = false;\r\n    let drawRegion = {\r\n      regions: [],\r\n      inverted: false,\r\n    };\r\n    if (this.drawLayer.regionRois.length > 0) {\r\n      drawRegion.regions = this.drawLayer.regionRois;\r\n\r\n      // soll der selected layer sein\r\n      let overlapRoiLayers = [];\r\n      if (this.removeOverlapSame) {\r\n        overlapRoiLayers.push(this.roiLayers[this.selectedLayer]);\r\n      }\r\n      if (this.removeOverlap) {\r\n        let siblingRoiLayers = findSiblingRoiLayers(\r\n          this.structures,\r\n          this.selectedLayer,\r\n          this.roiLayers\r\n        );\r\n        siblingRoiLayers.map((layer) => overlapRoiLayers.push(layer));\r\n      }\r\n\r\n      updateLayer(\r\n        this.layer,\r\n        drawRegion,\r\n        this.clear,\r\n        this.color,\r\n        this.subtype,\r\n        this.name,\r\n        this.roiLayers[this.selectedLayer].tree,\r\n        this.positionInRoiLayer,\r\n        this.fullyLoaded,\r\n        false,\r\n        this.roiLayers[this.parentLayer],\r\n        this.structures[this.originalSelectedLayer].id,\r\n        overlapRoiLayers,\r\n        this.clickedOnRoi\r\n      );\r\n      this.drawLayer.regionRois = [];\r\n      window.forceSidebarUpdate();\r\n    }\r\n  };\r\n\r\n  // triggered from Renderer, but usable from tool as well\r\n  onKeyDown(event) {\r\n    // enter key\r\n    if (event.code === \"Enter\") {\r\n      this.onApply();\r\n    }\r\n  }\r\n\r\n  mouse(params) {\r\n    try {\r\n      let {\r\n        event,\r\n        p,\r\n        color,\r\n        subtype,\r\n        name,\r\n        positionInRoiLayer,\r\n        fullyLoaded,\r\n        renderer,\r\n      } = params;\r\n      this.color = color;\r\n      this.subtype = subtype;\r\n      this.name = name;\r\n      this.positionInRoiLayer = positionInRoiLayer;\r\n      this.fullyLoaded = fullyLoaded;\r\n      this.renderer = renderer;\r\n      if (\r\n        event.type === \"mouseup\" ||\r\n        (this.flag && event.type === \"mouseleave\")\r\n      ) {\r\n        this.clear = event.button === 2;\r\n        this.point = p;\r\n        this.updateDrawing(p);\r\n      }\r\n    } catch (e) {\r\n      console.log(\"error:\", e);\r\n      window.showErrorSnackbar(\"Error, try again!\");\r\n    }\r\n  }\r\n\r\n  drawCustomCursor() {\r\n    const ctx = this.ctx;\r\n    if (this.ctx && this.point) {\r\n      ctx.beginPath();\r\n      ctx.globalAlpha = 1.0;\r\n      ctx.strokeStyle = this.isBrightfield ? \"#000000\" : \"#ffffff\";\r\n      ctx.lineWidth = 2 / this.scale;\r\n      ctx.arc(this.point.x, this.point.y, 5 / this.scale, 0, 2 * Math.PI);\r\n      ctx.fillStyle = \"#0673C1\";\r\n      ctx.stroke();\r\n      ctx.fill();\r\n      ctx.closePath();\r\n    }\r\n  }\r\n\r\n  exit() {}\r\n\r\n  renderConfiguration() {\r\n    return (\r\n      <div style={{ margin: \"12px\" }}>\r\n        {/* canvas for debugging */}\r\n        <canvas id=\"outputCanvas\"></canvas>\r\n        <Typography variant=\"h6\">{this.toolName}:</Typography>\r\n        <FormControl component=\"fieldset\" fullWidth>\r\n          <FormLabel component=\"legend\">\r\n            {\"Threshold: \" + this.threshold}\r\n          </FormLabel>\r\n          <Slider\r\n            min={1}\r\n            max={50}\r\n            value={this.threshold}\r\n            onChange={(e, v) => {\r\n              this.threshold = v;\r\n              window.forceSidebarUpdate();\r\n            }}\r\n            onChangeCommitted={() => {\r\n              this.updateDrawing(this.point);\r\n            }}\r\n            onKeyDown={(e) => this.onKeyDown(e)} //onKeyDown also triggered from Renderer\r\n          />\r\n        </FormControl>\r\n        <OverlapConfigForm\r\n          removeOverlap={this.removeOverlap}\r\n          removeOverlapSame={this.removeOverlapSame}\r\n          onChangeRemoveOverlap={(e) => (this.removeOverlap = e)}\r\n          onChangeRemoveOverlapSame={(e) => (this.removeOverlapSame = e)}\r\n        />\r\n        <FormLabel component=\"legend\">\r\n          {\"Buffer: \" + this.buffer + \" px\"}\r\n        </FormLabel>\r\n        <Slider\r\n          min={-10}\r\n          max={10}\r\n          value={this.buffer}\r\n          onChange={(e, v) => {\r\n            this.buffer = v;\r\n            window.forceSidebarUpdate();\r\n          }}\r\n          onChangeCommitted={() => {\r\n            this.updateDrawing(this.point);\r\n          }}\r\n          onKeyDown={(e) => this.onKeyDown(e)} //onKeyDown also triggered from Renderer\r\n        />\r\n\r\n        <Button\r\n          disabled={this.drawLayer.regionRois.length === 0}\r\n          style={{ marginTop: \"5px\" }}\r\n          fullWidth\r\n          variant=\"contained\"\r\n          color=\"primary\"\r\n          onClick={this.onApply}\r\n        >\r\n          Apply [Enter]\r\n        </Button>\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nexport default RegionGrowingTool;\r\n","import {\r\n  updateDrawLayer,\r\n  updateLayer,\r\n  findSiblingRoiLayers,\r\n  findSameLayer,\r\n} from \"../../utils/PolygonUtil\";\r\nimport { Button } from \"@mui/material\";\r\nimport { Typography, FormControl, FormLabel, Slider } from \"@mui/material\";\r\nimport Tool from \"./Tool\";\r\nimport React from \"react\";\r\nimport OverlapConfigForm from \"./ConfigForms/OverlapConfigForm\";\r\nimport Backend from \"../../../common/utils/Backend\";\r\n\r\nconst toolStates = {\r\n  idle: \"idle\",\r\n  drawingRect: \"drawingRect\",\r\n  analysing: \"analysing\",\r\n  ready: \"ready\",\r\n};\r\n\r\nclass RegionSAMTool extends Tool {\r\n  preventMiddleMousePos = true; //prevent middle mouse pos from being set, read in Renderer.jsx\r\n  toolName = \"AI Segmentation Tool\";\r\n  noConfig = false;\r\n  removeOverlap = null;\r\n  removeOverlapSame = null;\r\n  tempRemoveOverlap = null;\r\n  tempRemoveOverlapSame = null;\r\n  penOpacity = 1;\r\n  points = [];\r\n  lastSamCall = null;\r\n  startRectPoint = null;\r\n  endRectPoint = null;\r\n  toolState = toolStates.idle;\r\n\r\n  setLayer(obj) {\r\n    this.ome = obj.ome;\r\n    this.isBrightfield = obj.ome.channels[0].type === \"brightfield\";\r\n    this.ctx = obj.ctx; //context\r\n    this.canvas = obj.ctx.canvas; //canvas\r\n    this.layer = obj.layer;\r\n    this.roiLayers = obj.roiLayers;\r\n    let layerResults = findSameLayer(obj.structures, obj.selectedLayer);\r\n    this.selectedLayer = layerResults[0];\r\n    this.parentLayer = layerResults[1];\r\n    this.originalSelectedLayer = obj.selectedLayer;\r\n    this.structures = obj.structures;\r\n    this.drawLayer = obj.drawLayer;\r\n    this.spinloader = obj.spinloader;\r\n\r\n    const project = obj.viewerConfig_project;\r\n    if (this.fileId !== obj.fileId) {\r\n      this.fileId = obj.fileId;\r\n      this.points = [];\r\n      this.resetVisuals();\r\n    }\r\n    this.fileId = obj.fileId;\r\n    this.file = obj.project.files.find((f) => f.id === this.fileId);\r\n\r\n    if (this.removeOverlap === null) {\r\n      this.removeOverlap = project.projectProperties[\"PreventOverlap\"];\r\n    }\r\n    if (this.tempRemoveOverlap === null) {\r\n      this.tempRemoveOverlap = project.projectProperties[\"PreventOverlap\"];\r\n    }\r\n    if (this.removeOverlapSame === null) {\r\n      this.removeOverlapSame = project.projectProperties[\"PreventOverlapSame\"];\r\n    }\r\n\r\n    // set removeOverlap\r\n    // save current settings (in tempRemoveOverlap) if structure gets changed\r\n    if (obj.selectedLayer === 0) {\r\n      if (!this.noConfig) {\r\n        this.noConfig = true;\r\n        this.tempRemoveOverlap = this.removeOverlap;\r\n        this.tempRemoveOverlapSame = this.removeOverlapSame;\r\n        this.removeOverlap = false;\r\n        this.removeOverlapSame = false;\r\n        window.forceSidebarUpdate();\r\n      }\r\n    } else {\r\n      if (this.noConfig) {\r\n        this.noConfig = false;\r\n        this.removeOverlap = this.tempRemoveOverlap;\r\n        this.removeOverlapSame = this.tempRemoveOverlapSame;\r\n        window.forceSidebarUpdate();\r\n      }\r\n    }\r\n    window.forceSidebarUpdate();\r\n  }\r\n\r\n  setPreviewRect() {}\r\n\r\n  getPosition = () => {\r\n    return {\r\n      x: -this.ctx.getTransform().e,\r\n      y: -this.ctx.getTransform().f,\r\n    };\r\n  };\r\n\r\n  updateToolState = (newState) => {\r\n    this.toolState = newState;\r\n    window.forceSidebarUpdate();\r\n  };\r\n\r\n  setPolygonsWithSAM = (points = null) => {\r\n    const isPreview = points !== null;\r\n    if (!isPreview) {\r\n      points = this.points;\r\n    }\r\n    this.lastSamCall = performance.now();\r\n    const samData = {\r\n      fileId: this.fileId,\r\n      fileName: this.file?.sourcePath,\r\n      scene: this.ome.scene,\r\n      p1: this.startRectPoint,\r\n      p2: this.endRectPoint,\r\n      points: points,\r\n    };\r\n\r\n    this.updateToolState(toolStates.analysing);\r\n\r\n    Backend.useSAM(samData).then((response) => {\r\n      this.updateToolState(toolStates.ready);\r\n      this.spinloader.hide();\r\n      if (response.contours && response.contours.length > 0) {\r\n        if (isPreview) {\r\n          this.previewPolygons = response.contours;\r\n        } else {\r\n          this.polygons = response.contours;\r\n        }\r\n        this.updateDrawing();\r\n        if (this.points.length === 1) {\r\n          window.forceSidebarUpdate();\r\n        }\r\n      }\r\n    });\r\n  };\r\n\r\n  updateDrawing = () => {\r\n    this.drawLayer.regionRois = []; //only one region will be drawn to the draw layer, also needed to reduce size\r\n    if (typeof this.polygons === \"undefined\" || this.points.length === 0) {\r\n      this.polygons = [];\r\n    }\r\n\r\n    this.drawRegion = {\r\n      regions: this.polygons.map((polygon) => {\r\n        return polygon;\r\n      }),\r\n      inverted: false,\r\n    };\r\n    this.drawLayer.clear = this.clear;\r\n    updateDrawLayer(\r\n      this.drawLayer,\r\n      this.drawRegion,\r\n      false,\r\n      this.color,\r\n      this.subtype,\r\n      this.name\r\n    );\r\n  };\r\n\r\n  getTopLeftPoint = () => {\r\n    return {\r\n      x: Math.min(this.startRectPoint.x, this.endRectPoint.x),\r\n      y: Math.min(this.startRectPoint.y, this.endRectPoint.y),\r\n    };\r\n  };\r\n\r\n  getBottomRightPoint = () => {\r\n    return {\r\n      x: Math.max(this.startRectPoint.x, this.endRectPoint.x),\r\n      y: Math.max(this.startRectPoint.y, this.endRectPoint.y),\r\n    };\r\n  };\r\n\r\n  mouse(params) {\r\n    let {\r\n      event,\r\n      p,\r\n      color,\r\n      subtype,\r\n      name,\r\n      positionInRoiLayer,\r\n      fullyLoaded,\r\n      renderer,\r\n    } = params;\r\n    this.color = color;\r\n    this.subtype = subtype;\r\n    this.name = name;\r\n    this.positionInRoiLayer = positionInRoiLayer;\r\n    this.fullyLoaded = fullyLoaded;\r\n    this.renderer = renderer;\r\n    if (\r\n      event.type === \"mousedown\" &&\r\n      (event.button === 0 || event.button === 2)\r\n    ) {\r\n      if (this.isPointOutsideRect(p)) {\r\n        this.updateToolState(toolStates.drawingRect);\r\n        this.startRectPoint = p;\r\n        this.endRectPoint = p;\r\n        this.points = [];\r\n        this.previewPolygons = null;\r\n      } else if (this.toolState !== toolStates.drawingRect) {\r\n        this.lineFlag = true;\r\n        const isForeground = event.button === 0;\r\n        this.points.push({ x: p.x, y: p.y, isForeground });\r\n        this.setPolygonsWithSAM();\r\n      }\r\n    } else if (event.type === \"mousemove\") {\r\n      if (this.toolState === toolStates.drawingRect && !this.lineFlag) {\r\n        this.endRectPoint = p;\r\n      }\r\n      if (\r\n        this.lastSamCall &&\r\n        performance.now() - this.lastSamCall > 300 &&\r\n        this.toolState === toolStates.ready &&\r\n        this.isDrawingpointInsideRect(p)\r\n      ) {\r\n        this.setPolygonsWithSAM([{ x: p.x, y: p.y, isForeground: true }]);\r\n      }\r\n    } else if (\r\n      event.type === \"mouseup\" ||\r\n      ((this.toolState === toolStates.drawingRect || this.lineFlag) &&\r\n        event.type === \"mouseleave\")\r\n    ) {\r\n      if (this.isPointOutsideRect(p) && this.lineFlag) {\r\n        this.lineFlag = false;\r\n      } else if (this.isDrawingpointInsideRect(p)) {\r\n        this.lineFlag = false;\r\n        this.updateDrawing();\r\n      } else if (this.toolState === toolStates.drawingRect) {\r\n        this.clear = event.button === 2;\r\n\r\n        this.endRectPoint = p;\r\n        this.validateRect();\r\n      }\r\n    }\r\n  }\r\n\r\n  validateRect = () => {\r\n    const minWidth = 100;\r\n    const minHeight = 100;\r\n    if (\r\n      Math.abs(this.startRectPoint.x - this.endRectPoint.x) < minWidth ||\r\n      Math.abs(this.startRectPoint.y - this.endRectPoint.y) < minHeight\r\n    ) {\r\n      this.startRectPoint = null;\r\n      this.endRectPoint = null;\r\n      this.updateToolState(toolStates.idle);\r\n      this.resetVisuals();\r\n      window.showWarningSnackbar(\"Please select a larger area\");\r\n      return;\r\n    }\r\n    this.updateToolState(toolStates.ready);\r\n    this.updateDrawing();\r\n    this.spinloader.show();\r\n    this.setPolygonsWithSAM([]); // init image\r\n  };\r\n\r\n  isPointOutsideRect = (p) => {\r\n    let isOutside = true;\r\n    if (this.startRectPoint && this.endRectPoint) {\r\n      let tlp = this.getTopLeftPoint();\r\n      let brp = this.getBottomRightPoint();\r\n      isOutside = p.x < tlp.x || p.x > brp.x || p.y < tlp.y || p.y > brp.y;\r\n    }\r\n    return isOutside;\r\n  };\r\n\r\n  isDrawingpointInsideRect = (p) => {\r\n    let isInside = false;\r\n    if (this.startRectPoint && this.endRectPoint) {\r\n      let tlp = this.getTopLeftPoint();\r\n      let brp = this.getBottomRightPoint();\r\n      isInside = p.x > tlp.x && p.x < brp.x && p.y > tlp.y && p.y < brp.y;\r\n    }\r\n    return isInside;\r\n  };\r\n\r\n  drawRectangle = (ctx, scale) => {\r\n    if (this.startRectPoint && this.endRectPoint) {\r\n      let topLeftPoint = this.getTopLeftPoint();\r\n      let w = Math.abs(this.startRectPoint.x - this.endRectPoint.x);\r\n      let h = Math.abs(this.startRectPoint.y - this.endRectPoint.y);\r\n      if (ctx) {\r\n        ctx.beginPath();\r\n        ctx.globalAlpha = 1.0;\r\n        ctx.strokeStyle = \"#0673C1\";\r\n        ctx.lineWidth = 4 / scale;\r\n        ctx.rect(topLeftPoint.x, topLeftPoint.y, w, h);\r\n        ctx.stroke();\r\n        ctx.strokeStyle = \"#ffffff\";\r\n        ctx.lineWidth = 2 / scale;\r\n        ctx.rect(topLeftPoint.x, topLeftPoint.y, w, h);\r\n        ctx.stroke();\r\n        ctx.closePath();\r\n\r\n        ctx.beginPath();\r\n        ctx.fill();\r\n        ctx.closePath();\r\n\r\n        if (this.points.length > 0) {\r\n          for (let point of this.points) {\r\n            this.drawPlus(\r\n              ctx,\r\n              point,\r\n              point.isForeground ? \"#00ff00\" : \"#ff0000\"\r\n            );\r\n          }\r\n        }\r\n\r\n        ctx.globalAlpha = 1.0;\r\n      }\r\n    }\r\n  };\r\n\r\n  drawRectangleCross = (ctx, mousePosition) => {\r\n    ctx.beginPath();\r\n    ctx.globalAlpha = 1.0;\r\n    ctx.strokeStyle = this.isBrightfield ? \"#000000\" : \"#ffffff\";\r\n    ctx.beginPath();\r\n    ctx.moveTo(mousePosition.x, 0);\r\n    ctx.lineTo(mousePosition.x, 1000000);\r\n    ctx.moveTo(0, mousePosition.y);\r\n    ctx.lineTo(1000000, mousePosition.y);\r\n    ctx.stroke();\r\n    ctx.closePath();\r\n  };\r\n\r\n  drawPlus = (ctx, p, color) => {\r\n    const scale = 1 / ctx.getTransform().a;\r\n    const radius = 10 * scale;\r\n    ctx.beginPath();\r\n    ctx.globalAlpha = 1.0;\r\n    ctx.strokeStyle = color;\r\n    ctx.lineWidth = 2 * scale;\r\n    ctx.moveTo(p.x - radius, p.y);\r\n    ctx.lineTo(p.x + radius, p.y);\r\n    ctx.moveTo(p.x, p.y - radius);\r\n    ctx.lineTo(p.x, p.y + radius);\r\n    ctx.stroke();\r\n    ctx.closePath();\r\n  };\r\n\r\n  // previewPolygons: [[x1, y1], [x2, y2], ... [xn, yn ]]\r\n  drawPreviewPolygon = (ctx) => {\r\n    if (this.points.length === 0 && this.previewPolygons) {\r\n      const poly = this.previewPolygons[0];\r\n\r\n      ctx.beginPath();\r\n\r\n      ctx.moveTo(poly[0][0], poly[0][1]);\r\n      for (let i = 1; i < poly.length; i++) {\r\n        const [x, y] = poly[i];\r\n        ctx.lineTo(x, y);\r\n      }\r\n\r\n      // Close the path to form a closed polygon and fill it with a semi-transparent color\r\n      ctx.fillStyle = \"rgba(0, 0, 0, 0.5)\";\r\n      ctx.fill();\r\n      ctx.closePath();\r\n    }\r\n  };\r\n\r\n  drawPoligonOutline = (ctx) => {\r\n    if (this.polygons?.length > 0) {\r\n      const scale = ctx.getTransform().a;\r\n      ctx.beginPath();\r\n      ctx.globalAlpha = 1.0;\r\n      ctx.lineWidth = 2 / scale;\r\n      const poly = this.polygons[0];\r\n      ctx.moveTo(poly[0][0], poly[0][1]);\r\n      for (let i = 1; i < poly.length; i++) {\r\n        const [x, y] = poly[i];\r\n        ctx.lineTo(x, y);\r\n      }\r\n\r\n      // Draw the polygon with the desired color\r\n      ctx.lineWidth = 2 / scale;\r\n      ctx.strokeStyle = this.color;\r\n      ctx.stroke();\r\n      ctx.closePath();\r\n    }\r\n  };\r\n\r\n  drawCustomCursor(ctx, mousePosition) {\r\n    const scale = ctx.getTransform().a;\r\n    this.drawRectangle(ctx, scale);\r\n\r\n    if (this.isPointOutsideRect(mousePosition)) {\r\n      this.drawRectangleCross(ctx, mousePosition);\r\n    } else if (this.isDrawingpointInsideRect(mousePosition)) {\r\n      this.drawPlus(\r\n        ctx,\r\n        mousePosition,\r\n        this.isBrightfield ? \"#000000\" : \"#ffffff\"\r\n      );\r\n    }\r\n    this.drawPreviewPolygon(ctx);\r\n    this.drawPoligonOutline(ctx);\r\n  }\r\n\r\n  onKeyDown(e) {\r\n    if (e.code === \"Enter\") {\r\n      this.onApply();\r\n      return;\r\n    }\r\n    if (e.code === \"Escape\") {\r\n      this.onCancel();\r\n      return;\r\n    }\r\n    window.forceSidebarUpdate();\r\n  }\r\n\r\n  onApply = () => {\r\n    this.drawRegion.regions = [];\r\n    if (this.drawLayer.regionRois.length > 0) {\r\n      this.drawRegion.regions = this.drawLayer.regionRois;\r\n\r\n      let overlapRoiLayers = [];\r\n      if (this.removeOverlapSame) {\r\n        overlapRoiLayers.push(this.roiLayers[this.selectedLayer]);\r\n      }\r\n      if (this.removeOverlap) {\r\n        let siblingRoiLayers = findSiblingRoiLayers(\r\n          this.structures,\r\n          this.selectedLayer,\r\n          this.roiLayers\r\n        );\r\n        siblingRoiLayers.map((layer) => overlapRoiLayers.push(layer));\r\n      }\r\n\r\n      updateLayer(\r\n        this.layer,\r\n        this.drawRegion,\r\n        this.clear,\r\n        this.color,\r\n        this.subtype,\r\n        this.name,\r\n        this.roiLayers[this.selectedLayer].tree,\r\n        this.positionInRoiLayer,\r\n        this.fullyLoaded,\r\n        false,\r\n        this.roiLayers[this.parentLayer],\r\n        this.structures[this.originalSelectedLayer].id,\r\n        overlapRoiLayers,\r\n        this.clickedOnRoi\r\n      );\r\n      this.drawLayer.regionRois = [];\r\n    }\r\n    this.resetVisuals();\r\n  };\r\n\r\n  onCancel = () => {\r\n    this.resetVisuals();\r\n  };\r\n\r\n  resetVisuals = () => {\r\n    if (this.points.length === 0) {\r\n      this.startRectPoint = null;\r\n      this.endRectPoint = null;\r\n      this.updateToolState(toolStates.idle);\r\n    }\r\n    this.points = [];\r\n    this.polygons = [];\r\n    this.drawLayer.regionRois = [];\r\n    this.drawRegion = {\r\n      regions: [],\r\n      inverted: false,\r\n    };\r\n    this.previewPolygons = null;\r\n    updateDrawLayer(\r\n      this.drawLayer,\r\n      this.drawRegion,\r\n      false,\r\n      this.color,\r\n      this.subtype,\r\n      this.name\r\n    );\r\n    window.forceSidebarUpdate();\r\n  };\r\n\r\n  exit() {}\r\n\r\n  setRectWholeScene = () => {\r\n    this.startRectPoint = { x: 0, y: 0 };\r\n    this.endRectPoint = { x: this.ome.sizeX, y: this.ome.sizeY };\r\n    this.spinloader.show();\r\n    this.setPolygonsWithSAM([]);\r\n    window.forceSidebarUpdate();\r\n  };\r\n\r\n  renderConfiguration() {\r\n    return (\r\n      <div style={{ margin: \"12px\" }}>\r\n        <Typography variant=\"h6\">{this.toolName}:</Typography>\r\n        <FormControl component=\"fieldset\" fullWidth>\r\n          <FormLabel component=\"legend\">\r\n            {\"Line opacity = \" + this.penOpacity}\r\n          </FormLabel>\r\n          <Slider\r\n            min={1}\r\n            max={10}\r\n            value={this.penOpacity * 10}\r\n            onChange={(e, v) => {\r\n              this.penOpacity = v / 10;\r\n              window.forceSidebarUpdate();\r\n            }}\r\n          />\r\n        </FormControl>\r\n        <OverlapConfigForm\r\n          removeOverlap={this.removeOverlap}\r\n          removeOverlapSame={this.removeOverlapSame}\r\n          onChangeRemoveOverlap={(e) => (this.removeOverlap = e)}\r\n          onChangeRemoveOverlapSame={(e) => (this.removeOverlapSame = e)}\r\n        />\r\n        <Button\r\n          sx={{ marginBottom: \"8px\" }}\r\n          fullWidth\r\n          variant=\"contained\"\r\n          disabled={this.endRectPoint !== null}\r\n          onClick={this.setRectWholeScene}\r\n        >\r\n          Set Rectangle for whole Image\r\n        </Button>\r\n        <div\r\n          style={{\r\n            display: \"flex\",\r\n            alignItems: \"center\",\r\n            justifyContent: \"space-between\",\r\n          }}\r\n        >\r\n          <Button\r\n            disabled={this.toolState === toolStates.idle}\r\n            style={{ marginRight: \"5px\", width: \"50%\" }}\r\n            variant=\"contained\"\r\n            color=\"primary\"\r\n            onClick={this.onApply}\r\n          >\r\n            Apply [Enter]\r\n          </Button>\r\n          <Button\r\n            disabled={this.toolState === toolStates.idle}\r\n            style={{ marginLeft: \"5px\", width: \"50%\" }}\r\n            variant=\"contained\"\r\n            color=\"secondary\"\r\n            onClick={this.onCancel}\r\n          >\r\n            Cancel [Esc]\r\n          </Button>\r\n        </div>\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nexport default RegionSAMTool;\r\n","import React from \"react\";\r\nimport {\r\n  updateDrawLayer,\r\n  updateLayer,\r\n  findSiblingRoiLayers,\r\n  findSameLayer,\r\n  findClickedRoi,\r\n  getExterior,\r\n  checkIfStructureHidden,\r\n  distance,\r\n} from \"../../utils/PolygonUtil\";\r\nimport { Typography } from \"@mui/material\";\r\nimport Tool from \"./Tool\";\r\nimport OverlapConfigForm from \"./ConfigForms/OverlapConfigForm\";\r\n\r\nclass RegionTool extends Tool {\r\n  name = \"Region\";\r\n  noConfig = false;\r\n  flag = false;\r\n  downScale = 2;\r\n  points = [];\r\n  removeOverlap = null;\r\n  removeOverlapSame = null;\r\n  tempRemoveOverlap = null;\r\n  tempRemoveOverlapSame = null;\r\n  useNodeDrawingMode = null;\r\n  tempUseNodeDrawingMode = null;\r\n\r\n  setLayer(obj) {\r\n    this.layer = obj.layer;\r\n    this.roiLayers = obj.roiLayers;\r\n    let layerResults = findSameLayer(obj.structures, obj.selectedLayer);\r\n    this.selectedLayer = layerResults[0];\r\n    this.parentLayer = layerResults[1];\r\n    this.originalSelectedLayer = obj.selectedLayer;\r\n    this.structures = obj.structures;\r\n    this.drawLayer = obj.drawLayer;\r\n\r\n    const project = obj.viewerConfig_project;\r\n    if (this.removeOverlap === null) {\r\n      this.removeOverlap = project.projectProperties[\"PreventOverlap\"];\r\n    }\r\n    if (this.tempRemoveOverlap === null) {\r\n      this.tempRemoveOverlap = project.projectProperties[\"PreventOverlap\"];\r\n    }\r\n    if (this.removeOverlapSame === null) {\r\n      this.removeOverlapSame = project.projectProperties[\"PreventOverlapSame\"];\r\n    }\r\n    if (this.useNodeDrawingMode === null) {\r\n      this.useNodeDrawingMode = project.projectProperties[\"NodeDrawingMode\"]\r\n        ? true\r\n        : false;\r\n    }\r\n\r\n    // set removeOverlap\r\n    // save current settings (in tempRemoveOverlap) if structure gets changed\r\n    if (obj.selectedLayer === 0) {\r\n      if (!this.noConfig) {\r\n        this.noConfig = true;\r\n        this.tempRemoveOverlap = this.removeOverlap;\r\n        this.tempRemoveOverlapSame = this.removeOverlapSame;\r\n        this.removeOverlap = false;\r\n        this.removeOverlapSame = false;\r\n        this.tempUseNodeDrawingMode = this.useNodeDrawingMode;\r\n        this.useNodeDrawingMode = false;\r\n        window.forceSidebarUpdate();\r\n      }\r\n    } else {\r\n      if (this.noConfig) {\r\n        this.noConfig = false;\r\n        this.removeOverlap = this.tempRemoveOverlap;\r\n        this.removeOverlapSame = this.tempRemoveOverlapSame;\r\n        this.useNodeDrawingMode = this.tempUseNodeDrawingMode;\r\n        window.forceSidebarUpdate();\r\n      }\r\n    }\r\n  }\r\n\r\n  setPreviewRect() {}\r\n\r\n  updateDrawing(color, subtype, name, positionInRoiLayer, fullyLoaded) {\r\n    let drawRegion = {\r\n      regions: [],\r\n      inverted: false,\r\n    };\r\n    if (this.drawLayer.regionRois.length > 0) {\r\n      drawRegion.regions = this.drawLayer.regionRois;\r\n\r\n      // soll der selected layer sein\r\n      let overlapRoiLayers = [];\r\n      if (this.removeOverlapSame) {\r\n        overlapRoiLayers.push(this.roiLayers[this.selectedLayer]);\r\n      }\r\n      if (this.removeOverlap) {\r\n        let siblingRoiLayers = findSiblingRoiLayers(\r\n          this.structures,\r\n          this.selectedLayer,\r\n          this.roiLayers\r\n        );\r\n        siblingRoiLayers.map((layer) => overlapRoiLayers.push(layer));\r\n      }\r\n\r\n      updateLayer(\r\n        this.layer,\r\n        drawRegion,\r\n        this.clear,\r\n        color,\r\n        subtype,\r\n        name,\r\n        this.roiLayers[this.selectedLayer].tree,\r\n        positionInRoiLayer,\r\n        fullyLoaded,\r\n        false,\r\n        this.roiLayers[this.parentLayer],\r\n        this.structures[this.originalSelectedLayer].id,\r\n        overlapRoiLayers,\r\n        this.clickedOnRoi\r\n      );\r\n      this.drawLayer.regionRois = [];\r\n    }\r\n  }\r\n\r\n  addPoint = (event, p) => {\r\n    let eventPoint = { x: event.clientX, y: event.clientY };\r\n    if (this.points.length < 3 || this.useNodeDrawingMode) {\r\n      this.points.push([p.x, p.y]);\r\n      this.lastEventPoint = eventPoint;\r\n    } else {\r\n      const dist = distance(this.lastEventPoint, eventPoint);\r\n      if (dist < 10) {\r\n        this.points[this.points.length - 1] = [p.x, p.y];\r\n      } else {\r\n        this.points.push([p.x, p.y]);\r\n        this.lastEventPoint = eventPoint;\r\n      }\r\n    }\r\n  };\r\n\r\n  mouse(params) {\r\n    let {\r\n      event,\r\n      p,\r\n      color,\r\n      subtype,\r\n      name,\r\n      positionInRoiLayer,\r\n      fullyLoaded,\r\n      parentIdx,\r\n    } = params;\r\n    let parentLayer = parentIdx;\r\n    if (this.useNodeDrawingMode) {\r\n      if (\r\n        event.type === \"mousedown\" &&\r\n        (event.button === 0 || event.button === 2)\r\n      ) {\r\n        if (this.flag) {\r\n          if (\r\n            (this.clear && event.button === 2) ||\r\n            (!this.clear && event.button === 0)\r\n          ) {\r\n            this.addPointToDrawLayer(event, p, color, subtype);\r\n          } else {\r\n            this.applyDrawLayer(\r\n              color,\r\n              subtype,\r\n              name,\r\n              positionInRoiLayer,\r\n              fullyLoaded,\r\n              parentLayer\r\n            );\r\n          }\r\n        } else {\r\n          this.initDrawing(subtype, name, color, event, p);\r\n        }\r\n      }\r\n      return;\r\n    }\r\n    if (\r\n      event.type === \"mousedown\" &&\r\n      (event.button === 0 || event.button === 2)\r\n    ) {\r\n      this.initDrawing(subtype, name, color, event, p);\r\n      return;\r\n    }\r\n\r\n    if (event.type === \"mouseup\") {\r\n      this.applyDrawLayer(\r\n        color,\r\n        subtype,\r\n        name,\r\n        positionInRoiLayer,\r\n        fullyLoaded,\r\n        parentLayer\r\n      );\r\n      return;\r\n    }\r\n    if (this.flag && event.buttons !== 1 && event.buttons !== 2) {\r\n      this.flag = false;\r\n      this.drawLayer.regionRois = [];\r\n      // this.drawLayer.coordinates = [];\r\n      return;\r\n    }\r\n    if (event.type === \"mousemove\") {\r\n      if (this.flag) {\r\n        this.addPointToDrawLayer(event, p, color, subtype);\r\n      }\r\n    }\r\n  }\r\n\r\n  initDrawing = (subtype, name, color, event, p) => {\r\n    checkIfStructureHidden(\r\n      this.structures,\r\n      this.selectedLayer,\r\n      subtype,\r\n      name,\r\n      color\r\n    );\r\n    this.drawLayer.regionRois = [];\r\n    this.drawLayer.inverted = false;\r\n    // right mouse button -> clear\r\n    this.clear = event.button === 2;\r\n    this.drawLayer.clear = this.clear;\r\n\r\n    // update position history\r\n    this.points = [];\r\n    this.points.push([p.x, p.y]);\r\n\r\n    // set drawing flag\r\n    this.flag = true;\r\n\r\n    // check if mouse down is inside region? => exapand region\r\n    if (this.removeOverlapSame) {\r\n      this.clickedOnRoi = findClickedRoi(\r\n        p,\r\n        this.selectedLayer,\r\n        this.structures,\r\n        this.roiLayers,\r\n        this.includeBaseROI\r\n      );\r\n    }\r\n  };\r\n\r\n  addPointToDrawLayer = (event, p, color, subtype) => {\r\n    this.addPoint(event, p);\r\n\r\n    let drawRegion = {\r\n      regions: [this.points],\r\n      inverted: false,\r\n    };\r\n    drawRegion = getExterior(drawRegion);\r\n\r\n    this.drawLayer.regionRois = []; //only one region will be drawn to the draw layer\r\n    updateDrawLayer(this.drawLayer, drawRegion, false, color, subtype, name);\r\n  };\r\n\r\n  replaceLastPointInDrawLayer = (event, p, color, subtype) => {\r\n    if (this.points.length === 1) {\r\n      this.addPointToDrawLayer(event, p, color, subtype);\r\n      return;\r\n    }\r\n    if (this.points.length > 1) {\r\n      this.points.pop();\r\n      this.addPointToDrawLayer(event, p, color, subtype);\r\n    }\r\n  };\r\n\r\n  applyDrawLayer = (\r\n    color,\r\n    subtype,\r\n    name,\r\n    positionInRoiLayer,\r\n    fullyLoaded,\r\n    parentLayer\r\n  ) => {\r\n    // release drawing flag\r\n    this.flag = false;\r\n    this.points = [];\r\n    this.updateDrawing(\r\n      color,\r\n      subtype,\r\n      name,\r\n      positionInRoiLayer,\r\n      fullyLoaded,\r\n      parentLayer\r\n    );\r\n  };\r\n\r\n  drawCustomCursor(ctx, mousePosition, scale) {\r\n    // no custom cursor\r\n    if (ctx) {\r\n      if (this.useNodeDrawingMode && this.points.length > 0) {\r\n        const p1 = this.points[this.points.length - 1];\r\n        const p2 = [mousePosition.x, mousePosition.y];\r\n        const p3 = this.points[0];\r\n        ctx.lineWidth = 2 / scale;\r\n        ctx.beginPath();\r\n        ctx.globalAlpha = 1.0;\r\n        ctx.strokeStyle = \"#000000\";\r\n        ctx.moveTo(p1[0], p1[1]);\r\n        ctx.lineTo(p2[0], p2[1]);\r\n        ctx.lineTo(p3[0], p3[1]);\r\n        if (this.points.length == 2) {\r\n          ctx.lineTo(p1[0], p1[1]);\r\n        }\r\n        ctx.stroke();\r\n        ctx.closePath();\r\n      }\r\n    }\r\n  }\r\n\r\n  exit() {}\r\n\r\n  renderConfiguration() {\r\n    return (\r\n      <div>\r\n        <Typography variant=\"h6\">{this.name}:</Typography>\r\n        <OverlapConfigForm\r\n          removeOverlap={this.removeOverlap}\r\n          removeOverlapSame={this.removeOverlapSame}\r\n          useNodeDrawingMode={this.useNodeDrawingMode}\r\n          onChangeUseNodeDrawingMode={(e) => (this.useNodeDrawingMode = e)}\r\n          onChangeRemoveOverlap={(e) => (this.removeOverlap = e)}\r\n          onChangeRemoveOverlapSame={(e) => (this.removeOverlapSame = e)}\r\n        />\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nexport default RegionTool;\r\n","import {\r\n  updateLayer,\r\n  findSiblingRoiLayers,\r\n  findSameLayer,\r\n  createRegionRoi,\r\n  pointInside,\r\n} from \"../../utils/PolygonUtil\";\r\n\r\nimport {\r\n  Typography,\r\n  FormControl,\r\n  FormLabel,\r\n  Slider,\r\n  Button,\r\n} from \"@mui/material\";\r\nimport {\r\n  getContainedRegionRois,\r\n  getParentIndexLayer,\r\n} from \"../../utils/StructuresUtils\";\r\nimport Tool from \"./Tool\";\r\nimport React from \"react\";\r\nimport RBush from \"rbush\";\r\nimport * as turf from \"@turf/turf\";\r\nimport { buffer } from \"turf\";\r\nimport OverlapConfigForm from \"./ConfigForms/OverlapConfigForm\";\r\n\r\nclass RoiResizeTool extends Tool {\r\n  toolName = \"ROI Resize Tool\";\r\n  noConfig = false;\r\n  removeOverlap = true;\r\n  removeOverlapSame = true;\r\n  tempRemoveOverlap = true;\r\n  threshold = 1;\r\n  tree = new RBush();\r\n\r\n  setLayer(obj) {\r\n    this.layer = obj.layer;\r\n    this.roiLayers = obj.roiLayers;\r\n    let layerResults = findSameLayer(obj.structures, obj.selectedLayer);\r\n    this.selectedLayer = layerResults[0];\r\n    this.parentLayer = layerResults[1];\r\n    this.structures = obj.structures;\r\n    this.structure = obj.structures[obj.selectedLayer]; // currently selected structure\r\n    this.regionRois = getContainedRegionRois(\r\n      this.structure,\r\n      this.structures,\r\n      this.roiLayers\r\n    );\r\n    this.parentIndex = getParentIndexLayer(this.structure, this.structures);\r\n    this.spinloader = obj.spinloader;\r\n    this.tree.clear();\r\n    this.tree.load(this.regionRois.map((item) => item.treeItem));\r\n\r\n    // set removeOverlap\r\n    // save current settings (in tempRemoveOverlap) if structure gets changed\r\n    if (obj.selectedLayer === 0) {\r\n      if (!this.noConfig) {\r\n        this.noConfig = true;\r\n        this.tempRemoveOverlap = this.removeOverlap;\r\n        this.removeOverlap = false;\r\n        window.forceSidebarUpdate();\r\n      }\r\n    } else {\r\n      if (this.noConfig) {\r\n        this.noConfig = false;\r\n        this.removeOverlap = this.tempRemoveOverlap;\r\n        window.forceSidebarUpdate();\r\n      }\r\n    }\r\n  }\r\n\r\n  findSmallestTreeItem(p) {\r\n    let minArea = Number.MAX_SAFE_INTEGER;\r\n    let resultItem;\r\n    if (this.structures[this.selectedLayer].visible) {\r\n      let treeItems = this.tree.search({\r\n        minX: p.x,\r\n        minY: p.y,\r\n        maxX: p.x,\r\n        maxY: p.y,\r\n      });\r\n      for (let treeItem of treeItems) {\r\n        let b = treeItem.roi.bounds;\r\n\r\n        if (pointInside(p, treeItem.roi)) {\r\n          let bArea = (b.right - b.left) * (b.bottom - b.top);\r\n          if (bArea < minArea) {\r\n            minArea = bArea;\r\n            resultItem = treeItem;\r\n          }\r\n        }\r\n      }\r\n    }\r\n    return resultItem;\r\n  }\r\n\r\n  deleteItem = (item, parentIdx) => {\r\n    let historyItem = [];\r\n    let histId = this.structures[this.selectedLayer].id;\r\n    historyItem.push({ add: false, id: histId, roi: item.roi });\r\n    this.roiLayers[parentIdx].tree.remove(item);\r\n    this.roiLayers[parentIdx].layer.regionRois = this.roiLayers[parentIdx].tree\r\n      .all()\r\n      .map((treeItem) => treeItem.roi);\r\n    window.projectHistory.add(historyItem);\r\n  };\r\n\r\n  pointsToUpdateLayer = (newPoints, treeItem, pIndex) => {\r\n    let layerResults = findSameLayer(\r\n      this.structures,\r\n      this.roiLayers.findIndex(\r\n        (element) => element.id === treeItem.roi.structureId\r\n      )\r\n    );\r\n    this.selectedLayer = layerResults[0];\r\n    this.parentLayer = layerResults[1];\r\n\r\n    let item = treeItem.roi;\r\n    let regionRoi = createRegionRoi(\r\n      newPoints,\r\n      item.color,\r\n      item.isSubtype,\r\n      item.subtypeName,\r\n      item.fullyLoaded,\r\n      item.structureId,\r\n      false\r\n    );\r\n\r\n    let drawRegion = {\r\n      regions: [],\r\n      inverted: false,\r\n    };\r\n\r\n    drawRegion.regions.push(regionRoi);\r\n\r\n    let overlapRoiLayers = [];\r\n    if (this.removeOverlapSame) {\r\n      overlapRoiLayers.push(this.roiLayers[this.selectedLayer]);\r\n    }\r\n    if (this.removeOverlap) {\r\n      let siblingRoiLayers = findSiblingRoiLayers(\r\n        this.structures,\r\n        this.selectedLayer,\r\n        this.roiLayers\r\n      );\r\n      siblingRoiLayers.map((layer) => overlapRoiLayers.push(layer));\r\n    }\r\n\r\n    this.deleteItem(treeItem, pIndex);\r\n\r\n    updateLayer(\r\n      this.roiLayers[this.selectedLayer].layer,\r\n      drawRegion,\r\n      false, //clear\r\n      item.color,\r\n      item.isSubtype,\r\n      item.subtypeName,\r\n      this.roiLayers[this.selectedLayer].tree,\r\n      this.positionInRoiLayer,\r\n      item.fullyLoaded,\r\n      false, //overlap\r\n      this.roiLayers[this.parentLayer],\r\n      item.structureId,\r\n      overlapRoiLayers,\r\n      false //clicekd on roi\r\n    );\r\n  };\r\n\r\n  getAllChildsOfStructure = (structure, structures) => {\r\n    let affectedStructures = [];\r\n    affectedStructures.push(structure);\r\n    for (let affStruct of affectedStructures) {\r\n      if (affStruct.hasChild) {\r\n        let childs = structures.filter((struct) =>\r\n          struct.parentId === affStruct.id ? struct : false\r\n        );\r\n        for (let child of childs) {\r\n          if (!child.classificationSubtype) {\r\n            affectedStructures.push(child);\r\n          }\r\n        }\r\n      }\r\n    }\r\n    return affectedStructures;\r\n  };\r\n\r\n  growPoly = (treeItem, pIndex) => {\r\n    let newPoints = [];\r\n    let turfpoly = turf.polygon(treeItem.roi.regions);\r\n    let bufferedTurfPoly = buffer(turfpoly, this.threshold * 160);\r\n    if (bufferedTurfPoly.geometry.coordinates[0].length > 0) {\r\n      bufferedTurfPoly = turf.simplify(bufferedTurfPoly, {\r\n        tolerance: 0.05,\r\n        highQuality: false,\r\n      });\r\n    }\r\n    newPoints = bufferedTurfPoly.geometry.coordinates;\r\n    if (newPoints[0].length < 5 && turf.area(bufferedTurfPoly) < 1) return;\r\n    this.pointsToUpdateLayer(newPoints, treeItem, pIndex);\r\n  };\r\n\r\n  processStructures = (structures) => {\r\n    this.spinloader.show();\r\n    this.historyItem = [];\r\n    this.histId = this.structures[this.selectedLayer].id;\r\n    let roiCount = 0;\r\n    let roisProcessed = 0;\r\n    for (let structure of structures) {\r\n      let regionRois = getContainedRegionRois(\r\n        structure,\r\n        this.structures,\r\n        this.roiLayers\r\n      );\r\n      for (let regionRoi of regionRois) {\r\n        this.historyItem.push({ add: false, id: this.histId, roi: regionRoi });\r\n      }\r\n      roiCount += regionRois.length;\r\n    }\r\n    for (let structure of structures) {\r\n      let pIndex = getParentIndexLayer(structure, this.structures);\r\n      let regionRois = getContainedRegionRois(\r\n        structure,\r\n        this.structures,\r\n        this.roiLayers\r\n      );\r\n      for (let regionRoi of regionRois) {\r\n        setTimeout(() => {\r\n          this.growPoly(regionRoi.treeItem, pIndex);\r\n          roisProcessed += 1;\r\n          if (roisProcessed >= roiCount) {\r\n            this.finishProcessStructures(structures);\r\n          }\r\n        }, 0);\r\n      }\r\n    }\r\n  };\r\n\r\n  finishProcessStructures = (structures) => {\r\n    for (let structure of structures) {\r\n      const regionRois = getContainedRegionRois(\r\n        structure,\r\n        this.structures,\r\n        this.roiLayers\r\n      );\r\n      for (let regionRoi of regionRois) {\r\n        this.historyItem.push({ add: true, id: this.histId, roi: regionRoi });\r\n      }\r\n    }\r\n    window.projectHistory.collection = [];\r\n    window.projectHistory.addCollection();\r\n    window.projectHistory.add(this.historyItem);\r\n    this.spinloader.hide();\r\n  };\r\n\r\n  growStructures = () => {\r\n    window.projectHistory.startCollection();\r\n    let structures = this.getAllChildsOfStructure(\r\n      this.structure,\r\n      this.structures\r\n    );\r\n    this.processStructures(structures);\r\n  };\r\n\r\n  onApply = () => {\r\n    this.growStructures();\r\n  };\r\n\r\n  // triggered from Renderer, but usable from tool as well\r\n  onKeyDown(event) {\r\n    // enter key\r\n    if (event.code === \"Enter\") {\r\n      this.onApply();\r\n    }\r\n  }\r\n\r\n  mouse(params) {\r\n    let { color, subtype, name, positionInRoiLayer, fullyLoaded, p, event } =\r\n      params;\r\n    this.color = color;\r\n    this.subtype = subtype;\r\n    this.name = name;\r\n    this.positionInRoiLayer = positionInRoiLayer;\r\n    this.fullyLoaded = fullyLoaded;\r\n\r\n    if (event.type === \"mousedown\" && event.button === 0) {\r\n      let treeItem = this.findSmallestTreeItem(p);\r\n      if (treeItem) {\r\n        window.projectHistory.startCollection();\r\n        this.growPoly(treeItem, this.parentIndex);\r\n        window.projectHistory.addCollection();\r\n      }\r\n    }\r\n  }\r\n\r\n  renderConfiguration() {\r\n    return (\r\n      <div style={{ margin: \"12px\" }}>\r\n        {/* canvas for debugging */}\r\n        <canvas id=\"outputCanvas\"></canvas>\r\n        <Typography variant=\"h6\">{this.toolName}:</Typography>\r\n        <FormControl component=\"fieldset\" fullWidth>\r\n          <FormLabel component=\"legend\">\r\n            Grow or shrink an indiviual ROI or all belonging to a structure\r\n          </FormLabel>\r\n          <FormLabel component=\"legend\">\r\n            {\"Growth: \" + this.threshold + \" pixel\"}\r\n          </FormLabel>\r\n          <Slider\r\n            min={-4}\r\n            max={4}\r\n            step={0.1}\r\n            value={this.threshold}\r\n            onChange={(e, v) => {\r\n              this.threshold = v;\r\n              window.forceSidebarUpdate();\r\n            }}\r\n            onKeyDown={(e) => this.onKeyDown(e)} //onKeyDown also triggered from Renderer\r\n          />\r\n        </FormControl>\r\n        <OverlapConfigForm\r\n          removeOverlap={this.removeOverlap}\r\n          removeOverlapSame={this.removeOverlapSame}\r\n          onChangeRemoveOverlap={(e) => (this.removeOverlap = e)}\r\n          onChangeRemoveOverlapSame={(e) => (this.removeOverlapSame = e)}\r\n        />\r\n        <Button\r\n          style={{ marginTop: \"5px\" }}\r\n          fullWidth\r\n          variant=\"contained\"\r\n          color=\"primary\"\r\n          onClick={this.onApply}\r\n        >\r\n          Apply [Enter]\r\n        </Button>\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nexport default RoiResizeTool;\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport {\r\n  FormControl,\r\n  FormControlLabel,\r\n  List,\r\n  ListItem,\r\n  ListItemText,\r\n  Tooltip,\r\n  Typography,\r\n  Checkbox,\r\n  IconButton,\r\n  FormGroup,\r\n} from \"@mui/material\";\r\n\r\nimport {\r\n  Keyboard,\r\n  Mouse,\r\n  NavigateBefore,\r\n  NavigateNext,\r\n} from \"@mui/icons-material\";\r\n\r\nimport { pointInside } from \"../../utils/PolygonUtil\";\r\nimport Tool from \"./Tool\";\r\n\r\nimport {\r\n  getContainedRegionRois,\r\n  getParentIndexLayer,\r\n} from \"../../utils/StructuresUtils\";\r\n\r\nclass SelectionTool extends Tool {\r\n  name = \"Selection\";\r\n  selection = null;\r\n  foundLayer = -1;\r\n  classify = true;\r\n  borderColor = [\"#FFFFFF\", \"\", \"\"];\r\n  classificationId = [0, 0, 0];\r\n  automaticFileChange = true;\r\n\r\n  setLayer(obj) {\r\n    this.ome = obj.ome;\r\n    this.structures = obj.structures;\r\n    this.structure = obj.structures[obj.selectedLayer];\r\n    this.layer = obj.layer;\r\n    this.roiLayers = obj.roiLayers;\r\n    this.selectedLayer = obj.selectedLayer;\r\n    this.classifyFullSceneImage =\r\n      obj.viewerConfig_project.projectProperties.ClassifySceneAsOneImage;\r\n    this.project = obj.project;\r\n    this.fileId = obj.fileId;\r\n    if (this.borderColor[1] === \"\") {\r\n      this.setCol();\r\n    }\r\n    if (this.classificationId[1] === 0) {\r\n      this.setIds();\r\n    }\r\n    this.regionRois = getContainedRegionRois(\r\n      this.structure,\r\n      this.structures,\r\n      this.roiLayers\r\n    );\r\n    this.parentIndex = getParentIndexLayer(this.structure, this.structures);\r\n  }\r\n\r\n  setCol = () => {\r\n    let childs = this.findChilds(this.structures[this.selectedLayer]);\r\n\r\n    if (childs.length > 1) {\r\n      if (this.borderColor[1] === \"\") {\r\n        this.borderColor[1] = childs[0].color;\r\n      }\r\n\r\n      if (this.borderColor[2] === \"\") {\r\n        this.borderColor[2] = childs[1].color;\r\n      }\r\n    }\r\n  };\r\n\r\n  setIds = () => {\r\n    let childs = this.findChilds(this.structures[this.selectedLayer]);\r\n\r\n    if (childs.length > 1) {\r\n      if (this.classificationId[1] === 0) {\r\n        this.classificationId[1] = childs[0].id;\r\n      }\r\n\r\n      if (this.classificationId[2] === 0) {\r\n        this.classificationId[2] = childs[1].id;\r\n      }\r\n    }\r\n  };\r\n\r\n  findChilds = (subType) => {\r\n    return this.structures.filter(\r\n      (element) =>\r\n        element.subtypeLevel === subType.subtypeLevel + 1 &&\r\n        element.parentId === subType.id &&\r\n        element.classificationSubtype\r\n    );\r\n  };\r\n\r\n  setBorderColor = (c) => {\r\n    this.borderColor = c;\r\n    window.forceSidebarUpdate();\r\n  };\r\n\r\n  setClassificationId = (c) => {\r\n    this.classificationId = c;\r\n    window.forceSidebarUpdate();\r\n  };\r\n\r\n  setClassification = (e) => {\r\n    this.classify = e.target.checked ? true : false;\r\n    window.forceSidebarUpdate();\r\n  };\r\n\r\n  setAutomaticFileChange = (e) => {\r\n    this.automaticFileChange = e.target.checked ? true : false;\r\n    window.forceSidebarUpdate();\r\n  };\r\n\r\n  setPreviewRect() {}\r\n\r\n  findSmallestTreeItem(p) {\r\n    let minArea = Number.MAX_SAFE_INTEGER;\r\n    let resultItem;\r\n    for (let i = 0; i < this.roiLayers.length; i++) {\r\n      if (this.structures[i].visible) {\r\n        let treeItems = this.roiLayers[i].tree.search({\r\n          minX: p.x,\r\n          minY: p.y,\r\n          maxX: p.x,\r\n          maxY: p.y,\r\n        });\r\n        for (let treeItem of treeItems) {\r\n          let b = treeItem.roi.bounds;\r\n\r\n          if (pointInside(p, treeItem.roi)) {\r\n            let bArea = (b.right - b.left) * (b.bottom - b.top);\r\n            if (bArea < minArea) {\r\n              minArea = bArea;\r\n              resultItem = treeItem;\r\n              this.selectedLayer = i;\r\n            }\r\n          }\r\n        }\r\n      }\r\n    }\r\n    return resultItem;\r\n  }\r\n\r\n  changeItem = (e, fromButton, dir) => {\r\n    if (this.selection) {\r\n      let p = {\r\n        x: 0,\r\n        y: 0,\r\n      };\r\n\r\n      let direction = 0;\r\n      if (fromButton) {\r\n        if (dir === \"next\") {\r\n          direction = 1;\r\n        }\r\n        if (dir === \"before\") {\r\n          direction = 2;\r\n        }\r\n      } else {\r\n        if (e.key === \"ArrowRight\") {\r\n          direction = 1;\r\n        }\r\n        if (e.key === \"ArrowLeft\") {\r\n          direction = 2;\r\n        }\r\n      }\r\n\r\n      // if not classification structure\r\n      if (!this.structures[this.selectedLayer].classificationSubtype) {\r\n        let idx = this.roiLayers[this.selectedLayer].layer.regionRois.findIndex(\r\n          (element) =>\r\n            element.bounds.left === this.selection.roi.bounds.left &&\r\n            element.bounds.top === this.selection.roi.bounds.top &&\r\n            element.bounds.bottom === this.selection.roi.bounds.bottom &&\r\n            element.bounds.right === this.selection.roi.bounds.right\r\n        );\r\n\r\n        if (\r\n          typeof this.roiLayers[this.selectedLayer].layer.regionRois[idx] ===\r\n          \"undefined\"\r\n        )\r\n          return;\r\n        // get middlepoint of selected roi\r\n        let boundsSelection =\r\n          this.roiLayers[this.selectedLayer].layer.regionRois[idx].bounds;\r\n        p = {\r\n          x:\r\n            boundsSelection.right -\r\n            (boundsSelection.right - boundsSelection.left) * 0.5,\r\n          y:\r\n            boundsSelection.bottom -\r\n            (boundsSelection.bottom - boundsSelection.top) * 0.5,\r\n        };\r\n\r\n        switch (direction) {\r\n          case 1: //right\r\n            if (this.roiLayers[this.selectedLayer].layer.regionRois[idx + 1]) {\r\n              let bounds =\r\n                this.roiLayers[this.selectedLayer].layer.regionRois[idx + 1]\r\n                  .bounds;\r\n              p.x = bounds.right - (bounds.right - bounds.left) * 0.5;\r\n              p.y = bounds.bottom - (bounds.bottom - bounds.top) * 0.5;\r\n            }\r\n            break;\r\n          case 2: // left\r\n            if (this.roiLayers[this.selectedLayer].layer.regionRois[idx - 1]) {\r\n              let bounds =\r\n                this.roiLayers[this.selectedLayer].layer.regionRois[idx - 1]\r\n                  .bounds;\r\n              p.x = bounds.right - (bounds.right - bounds.left) * 0.5;\r\n              p.y = bounds.bottom - (bounds.bottom - bounds.top) * 0.5;\r\n            }\r\n            break;\r\n          default:\r\n            break;\r\n        }\r\n      }\r\n\r\n      this.selection = this.findSmallestTreeItem(p);\r\n\r\n      if (this.selection !== null && this.selection) {\r\n        window.moveToRect(this.selection.roi.bounds);\r\n        let obj = {\r\n          r: this.selection.roi,\r\n          colors: \"\",\r\n          classify: this.classify,\r\n        };\r\n        if (fromButton) {\r\n          window.setNewSelRoi(obj);\r\n        }\r\n\r\n        return obj;\r\n      }\r\n    }\r\n  };\r\n\r\n  changeTile = (e) => {\r\n    if (this.selection) {\r\n      let p = {\r\n        x:\r\n          this.selection.roi.bounds.left +\r\n          (this.selection.roi.bounds.right - this.selection.roi.bounds.left) /\r\n            2,\r\n        y:\r\n          this.selection.roi.bounds.top +\r\n          (this.selection.roi.bounds.bottom - this.selection.roi.bounds.top) /\r\n            2,\r\n      };\r\n\r\n      // if no regions in this layer return\r\n      if (this.roiLayers[this.selectedLayer].layer.regionRois.length === 0) {\r\n        return;\r\n      }\r\n\r\n      // width ist width of roi in top left because top left is always a square\r\n      let width =\r\n        this.roiLayers[this.selectedLayer].layer.regionRois[0].bounds.right;\r\n\r\n      switch (e.key) {\r\n        case \"ArrowRight\":\r\n          if (p.x + width <= this.ome.sizeX) {\r\n            p.x = p.x + width;\r\n          } else {\r\n            p.x = this.ome.sizeX - 1;\r\n          }\r\n          e.preventDefault();\r\n          break;\r\n        case \"ArrowLeft\":\r\n          if (p.x - width >= 0) {\r\n            p.x = p.x - width;\r\n          }\r\n          e.preventDefault();\r\n          break;\r\n        case \"ArrowUp\":\r\n          if (p.y - width >= 0) {\r\n            p.y = p.y - width;\r\n          }\r\n          e.preventDefault();\r\n          break;\r\n        case \"ArrowDown\":\r\n          if (p.y + width <= this.ome.sizeY) {\r\n            p.y = p.y + width;\r\n          } else {\r\n            p.y = this.ome.sizeY - 1;\r\n          }\r\n          e.preventDefault();\r\n          break;\r\n        default:\r\n          break;\r\n      }\r\n\r\n      this.selection = this.findSmallestTreeItem(p);\r\n\r\n      if (this.selection !== null && this.selection) {\r\n        window.moveToRect(this.selection.roi.bounds);\r\n        let obj = {\r\n          r: this.selection.roi,\r\n          colors: \"\",\r\n          classify: this.classify,\r\n        };\r\n        return obj;\r\n      }\r\n    }\r\n  };\r\n\r\n  deleteSelectedRoi = () => {\r\n    let historyItem = [];\r\n    let histId = this.structures[this.parentIndex].id;\r\n\r\n    historyItem.push({ add: false, id: histId, roi: this.selection });\r\n    this.roiLayers[this.parentIndex].tree.remove(this.selection);\r\n    this.roiLayers[this.parentIndex].layer.regionRois = this.roiLayers[\r\n      this.parentIndex\r\n    ].tree\r\n      .all()\r\n      .map((treeItem) => treeItem.roi);\r\n    this.selection = null;\r\n    window.projectHistory.add(historyItem);\r\n    window.forceSidebarUpdate();\r\n  };\r\n\r\n  onKeyDown(e, fromRenderer, tilesProject) {\r\n    // delete item\r\n    if (!tilesProject && e.key === \"Delete\") {\r\n      this.deleteSelectedRoi();\r\n    }\r\n\r\n    if (!fromRenderer) {\r\n      return;\r\n    }\r\n    if (!tilesProject) {\r\n      return this.changeItem(e);\r\n    } else {\r\n      return this.changeTile(e);\r\n    }\r\n  }\r\n\r\n  mouse(params) {\r\n    let { event, p } = params;\r\n    if (!p) {\r\n      return;\r\n    }\r\n\r\n    this.curX = p.x;\r\n    this.curY = p.y;\r\n\r\n    let color = \"\";\r\n    let id = 0;\r\n\r\n    // mouse middle button\r\n    if (event.button === 1) {\r\n      return;\r\n    }\r\n    // left button\r\n    if (event.button === 0) {\r\n      color = this.borderColor[1];\r\n      id = this.classificationId[1];\r\n    }\r\n    // right button\r\n    if (event.button === 2) {\r\n      color = this.borderColor[2];\r\n      id = this.classificationId[2];\r\n    }\r\n\r\n    if (event.type === \"mousedown\") {\r\n      this.selection = this.findSmallestTreeItem(p);\r\n    }\r\n\r\n    if (this.selection !== null && this.selection) {\r\n      let obj = {\r\n        r: this.selection.roi,\r\n        colors: color,\r\n        classify: this.classify,\r\n        id: id,\r\n        changeFile: this.classifyFullSceneImage,\r\n        automaticFileChange: this.automaticFileChange,\r\n      };\r\n      return obj;\r\n    }\r\n  }\r\n\r\n  /**\r\n   * Draw a custom cursor\r\n   */\r\n  drawCustomCursor(ctx, mousePosition, fkt) {\r\n    if (this.selection && !this.classifyFullSceneImage) {\r\n      const dashLength = 15 / fkt;\r\n      ctx.beginPath();\r\n      ctx.setLineDash([dashLength, dashLength]);\r\n      ctx.globalAlpha = 1.0;\r\n      ctx.strokeStyle = \"#FF0000\";\r\n      ctx.lineWidth = 2 / fkt;\r\n      let b = this.selection.roi.bounds;\r\n      // no custom cursor\r\n      ctx.rect(b.left, b.top, b.right - b.left, b.bottom - b.top);\r\n      ctx.stroke();\r\n      ctx.closePath();\r\n      ctx.setLineDash([]);\r\n    }\r\n  }\r\n\r\n  exit() {}\r\n\r\n  renderConfiguration() {\r\n    return (\r\n      <div>\r\n        <Typography variant=\"h6\">{this.name}:</Typography>\r\n        <ConfigForm\r\n          borderColor={this.borderColor}\r\n          classificationId={this.classificationId}\r\n          selection={this.selection}\r\n          structures={this.structures}\r\n          selectedLayer={this.selectedLayer}\r\n          classifyFullSceneImage={this.classifyFullSceneImage}\r\n          project={this.project}\r\n          fileId={this.fileId}\r\n          setBorderColor={this.setBorderColor}\r\n          setClassificationId={this.setClassificationId}\r\n          setClassification={this.setClassification}\r\n          classify={this.classify}\r\n          setAutomaticFileChange={this.setAutomaticFileChange}\r\n          automaticFileChange={this.automaticFileChange}\r\n          changeSelRoi={this.changeItem}\r\n        />\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nclass ConfigForm extends Component {\r\n  findChilds = (subType) => {\r\n    return this.props.structures.filter(\r\n      (element) =>\r\n        element.subtypeLevel === subType.subtypeLevel + 1 &&\r\n        element.parentId === subType.id &&\r\n        element.classificationSubtype\r\n    );\r\n  };\r\n\r\n  handleChangeClassification = (e) => {\r\n    this.props.setClassification(e);\r\n  };\r\n\r\n  handleAutomaticFileChange = (e) => {\r\n    this.props.setAutomaticFileChange(e);\r\n  };\r\n\r\n  getNextFileId = () => {\r\n    const { project, fileId } = this.props;\r\n    let inxCurrentFile = project.files.findIndex(\r\n      (element) => element.id === fileId\r\n    );\r\n\r\n    if (project.files[inxCurrentFile + 1]) {\r\n      return project.files[inxCurrentFile + 1].id;\r\n    } else {\r\n      // if last file\r\n      window.showWarningSnackbar(\"Last file.\");\r\n      return null;\r\n    }\r\n  };\r\n\r\n  getPrevFileId = () => {\r\n    const { project, fileId } = this.props;\r\n    let inxCurrentFile = project.files.findIndex(\r\n      (element) => element.id === fileId\r\n    );\r\n\r\n    if (project.files[inxCurrentFile - 1]) {\r\n      return project.files[inxCurrentFile - 1].id;\r\n    } else {\r\n      // if last file\r\n      window.showWarningSnackbar(\"First file.\");\r\n      return null;\r\n    }\r\n  };\r\n\r\n  getCurrentFileInx = () => {\r\n    const { project, fileId } = this.props;\r\n    return project.files.findIndex((element) => element.id === fileId) + 1;\r\n  };\r\n\r\n  render() {\r\n    let childs = this.findChilds(\r\n      this.props.structures[this.props.selectedLayer]\r\n    );\r\n    childs.unshift(this.props.structures[this.props.selectedLayer]);\r\n\r\n    return (\r\n      <div>\r\n        <FormControl component=\"fieldset\" fullWidth>\r\n          <FormControlLabel\r\n            label=\"Classify with mouse\"\r\n            style={{ marginLeft: \"5px\", marginTop: \"10px\" }}\r\n            control={\r\n              <Checkbox\r\n                name=\"CheckboxClassify\"\r\n                checked={this.props.classify}\r\n                onChange={this.handleChangeClassification}\r\n              />\r\n            }\r\n          />\r\n          <List\r\n            style={{\r\n              marginBottom: \"-20px\",\r\n            }}\r\n          >\r\n            <ListItem\r\n              onContextMenu={(e) => {\r\n                e.preventDefault();\r\n              }}\r\n            >\r\n              <ListItemText primary=\"Subtype name\" />\r\n              <Tooltip\r\n                disableInteractive\r\n                title=\"Left (L) or right (R) click./nLeft or right click on item to set subtypes.\"\r\n              >\r\n                <Mouse style={{ marginRight: \"50px\" }} />\r\n              </Tooltip>\r\n              <Tooltip disableInteractive title=\"Shortcut number on keyboard\">\r\n                <Keyboard />\r\n              </Tooltip>\r\n            </ListItem>\r\n          </List>\r\n          <div\r\n            style={{\r\n              overflow: \"auto\",\r\n            }}\r\n          >\r\n            <List>\r\n              {childs.map((child, index) => (\r\n                <ListItem\r\n                  key={index}\r\n                  onContextMenu={(e) => {\r\n                    e.preventDefault();\r\n                  }}\r\n                  onMouseUp={(e) => {\r\n                    if (\r\n                      e.nativeEvent.which === 3 &&\r\n                      this.props.borderColor[1] !== child.color &&\r\n                      this.props.classificationId[1] !== child.id\r\n                    ) {\r\n                      // right click\r\n                      this.props.borderColor[2] = child.color;\r\n                      this.props.classificationId[2] = child.id;\r\n                    } else if (\r\n                      e.nativeEvent.which === 1 &&\r\n                      this.props.borderColor[2] !== child.color &&\r\n                      this.props.classificationId[2] !== child.id\r\n                    ) {\r\n                      // left click\r\n                      this.props.borderColor[1] = child.color;\r\n                      this.props.classificationId[1] = child.id;\r\n                    }\r\n                    this.props.setBorderColor(this.props.borderColor);\r\n                    this.props.setClassificationId(this.props.classificationId);\r\n                    e.preventDefault();\r\n                    this.forceUpdate();\r\n                  }}\r\n                >\r\n                  <ListItemText\r\n                    style={{\r\n                      color:\r\n                        child.color === \"rgba(0, 0, 0, 0.0)\"\r\n                          ? \"#000000\"\r\n                          : child.color,\r\n                    }}\r\n                    primary={child.label}\r\n                  />\r\n                  {child.color === this.props.borderColor[1] &&\r\n                    child.id === this.props.classificationId[1] &&\r\n                    this.props.classify && (\r\n                      <Typography style={{ marginRight: \"62px\" }}>L</Typography>\r\n                    )}\r\n                  {child.color === this.props.borderColor[2] &&\r\n                    child.id === this.props.classificationId[2] &&\r\n                    this.props.classify && (\r\n                      <Typography style={{ marginRight: \"62px\" }}>R</Typography>\r\n                    )}\r\n                  <Typography style={{ marginRight: \"8px\" }}>\r\n                    {index}\r\n                  </Typography>\r\n                </ListItem>\r\n              ))}\r\n            </List>\r\n          </div>\r\n        </FormControl>\r\n        {!this.props.classifyFullSceneImage && (\r\n          <div>\r\n            <Typography style={{ marginTop: \"30px\" }}>\r\n              Change selected item:\r\n            </Typography>\r\n            <FormGroup row>\r\n              <Tooltip disableInteractive title=\"Go to previous item\">\r\n                <IconButton\r\n                  onClick={() => {\r\n                    this.props.changeSelRoi(null, true, \"before\");\r\n                  }}\r\n                  size=\"large\"\r\n                >\r\n                  <NavigateBefore />\r\n                </IconButton>\r\n              </Tooltip>\r\n              <Tooltip disableInteractive title=\"Go to next item\">\r\n                <IconButton\r\n                  onClick={() => {\r\n                    this.props.changeSelRoi(null, true, \"next\");\r\n                  }}\r\n                  size=\"large\"\r\n                >\r\n                  <NavigateNext />\r\n                </IconButton>\r\n              </Tooltip>\r\n            </FormGroup>\r\n          </div>\r\n        )}\r\n        {this.props.classifyFullSceneImage && (\r\n          <div>\r\n            <FormControlLabel\r\n              label=\"Automatic file change\"\r\n              style={{ marginLeft: \"5px\", marginTop: \"10px\" }}\r\n              control={\r\n                <Checkbox\r\n                  name=\"CheckboxAutomaticFileChange\"\r\n                  checked={this.props.automaticFileChange}\r\n                  onChange={this.handleAutomaticFileChange}\r\n                />\r\n              }\r\n            />\r\n            <Typography style={{ marginTop: \"10px\" }}>Change file:</Typography>\r\n            <FormGroup row>\r\n              <Tooltip disableInteractive title=\"Go to previous file\">\r\n                <IconButton\r\n                  onClick={() => {\r\n                    let fileId = this.getPrevFileId();\r\n                    if (fileId !== null) {\r\n                      window.onSelectFile(fileId);\r\n                    }\r\n                  }}\r\n                  size=\"large\"\r\n                >\r\n                  <NavigateBefore />\r\n                </IconButton>\r\n              </Tooltip>\r\n              <Tooltip disableInteractive title=\"Go to next file\">\r\n                <IconButton\r\n                  onClick={() => {\r\n                    let fileId = this.getNextFileId();\r\n                    if (fileId !== null) {\r\n                      window.onSelectFile(fileId);\r\n                    }\r\n                  }}\r\n                  size=\"large\"\r\n                >\r\n                  <NavigateNext />\r\n                </IconButton>\r\n              </Tooltip>\r\n              <Typography variant=\"h6\" style={{ marginTop: \"7px\" }}>\r\n                File {this.getCurrentFileInx()} /{\" \"}\r\n                {this.props.project.files.length}\r\n              </Typography>\r\n            </FormGroup>\r\n          </div>\r\n        )}\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nConfigForm.propTypes = {\r\n  structures: PropTypes.array,\r\n  setClassification: PropTypes.func,\r\n  setAutomaticFileChange: PropTypes.func,\r\n  selectedLayer: PropTypes.number,\r\n  classify: PropTypes.bool,\r\n  automaticFileChange: PropTypes.bool,\r\n  classifyFullSceneImage: PropTypes.bool,\r\n  borderColor: PropTypes.array,\r\n  classificationId: PropTypes.array,\r\n  setBorderColor: PropTypes.func,\r\n  setClassificationId: PropTypes.func,\r\n  changeSelRoi: PropTypes.func,\r\n  project: PropTypes.object,\r\n  fileId: PropTypes.string,\r\n};\r\n\r\nexport default SelectionTool;\r\n","import Tool from \"./Tool\";\r\nimport React from \"react\";\r\nimport {\r\n  Button,\r\n  FormControl,\r\n  InputLabel,\r\n  OutlinedInput,\r\n  InputAdornment,\r\n  IconButton,\r\n  Typography,\r\n} from \"@mui/material\";\r\nimport PlayArrowIcon from \"@mui/icons-material/PlayArrow\";\r\nimport StopIcon from \"@mui/icons-material/Stop\";\r\nimport ContentCopyIcon from \"@mui/icons-material/ContentCopy\";\r\nimport Backend from \"../../../common/utils/Backend\";\r\n\r\nfunction dataURItoBlob(dataURI) {\r\n  // convert base64/URLEncoded data component to raw binary data held in a string\r\n  var byteString;\r\n  if (dataURI.split(\",\")[0].indexOf(\"base64\") >= 0)\r\n    byteString = atob(dataURI.split(\",\")[1]);\r\n  else byteString = unescape(dataURI.split(\",\")[1]);\r\n\r\n  // separate out the mime component\r\n  var mimeString = dataURI.split(\",\")[0].split(\":\")[1].split(\";\")[0];\r\n\r\n  // write the bytes of the string to a typed array\r\n  var ia = new Uint8Array(byteString.length);\r\n  for (var i = 0; i < byteString.length; i++) {\r\n    ia[i] = byteString.charCodeAt(i);\r\n  }\r\n\r\n  return new Blob([ia], { type: mimeString });\r\n}\r\n\r\nclass StreamViewTool extends Tool {\r\n  name = \"Stream\";\r\n  includeBaseROI = true;\r\n  activeTab = 0;\r\n  isStreaming = false;\r\n  streamUrl = \"\";\r\n\r\n  setLayer(obj) {\r\n    this.ctx = obj.ctx;\r\n    this.project = obj.project;\r\n    this.streamUrl =\r\n      \"https://stream.hs-analysis.com?target=\" +\r\n      this.project.id +\r\n      \"&name=\" +\r\n      this.project.name +\r\n      \" (\" +\r\n      this.project.viewerConfig.project.label +\r\n      \")\";\r\n    this.rendererDict = obj.rendererDict;\r\n    this.fileId = obj.fileId;\r\n  }\r\n\r\n  setPreviewRect() {}\r\n\r\n  handleChange = () => {};\r\n\r\n  exit() {}\r\n\r\n  uploadRendererContent = () => {\r\n    let img = this.rendererDict[this.fileId].canvas;\r\n    img = img.toDataURL(\"image/jpeg\", 0.9);\r\n    Backend.streamRenderer(dataURItoBlob(img), this.project.id, () => {\r\n      if (this.isStreaming) {\r\n        setTimeout(this.uploadRendererContent, 10);\r\n      }\r\n    });\r\n  };\r\n\r\n  toggleStream = () => {\r\n    if (this.isStreaming) {\r\n      this.isStreaming = false;\r\n    } else {\r\n      this.isStreaming = true;\r\n      this.uploadRendererContent();\r\n    }\r\n    window.forceSidebarUpdate();\r\n  };\r\n\r\n  handleCopyLink = () => {\r\n    navigator.clipboard.writeText(this.streamUrl);\r\n    window.showSuccessSnackbar(\"Stream link copyied to clipboard!\");\r\n  };\r\n\r\n  renderConfiguration() {\r\n    return (\r\n      <div>\r\n        <Typography variant=\"h6\">{this.name}:</Typography>\r\n        <FormControl fullWidth sx={{ m: 1, margin: 0 }} variant=\"outlined\">\r\n          <InputLabel htmlFor=\"outlined-adornment-password\">\r\n            Stream link\r\n          </InputLabel>\r\n          <OutlinedInput\r\n            fullWidth\r\n            type=\"text\"\r\n            value={this.streamUrl}\r\n            endAdornment={\r\n              <InputAdornment position=\"end\">\r\n                <IconButton\r\n                  aria-label=\"copy link to clipboard\"\r\n                  onClick={this.handleCopyLink}\r\n                  edge=\"end\"\r\n                >\r\n                  <ContentCopyIcon />\r\n                </IconButton>\r\n              </InputAdornment>\r\n            }\r\n            label=\"Stream link\"\r\n          />\r\n        </FormControl>\r\n        <Button\r\n          style={{ marginTop: \"5px\" }}\r\n          fullWidth\r\n          variant=\"contained\"\r\n          color=\"primary\"\r\n          onClick={this.toggleStream}\r\n        >\r\n          {this.isStreaming ? (\r\n            <React.Fragment>\r\n              <StopIcon /> Stop Stream\r\n            </React.Fragment>\r\n          ) : (\r\n            <React.Fragment>\r\n              <PlayArrowIcon /> Start Stream\r\n            </React.Fragment>\r\n          )}\r\n        </Button>\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nexport default StreamViewTool;\r\n","import { pointInside } from \"../../utils/PolygonUtil\";\r\nimport Tool from \"./Tool\";\r\n\r\nclass TilesClassificationTool extends Tool {\r\n  name = \"TilesClassificationTool\";\r\n  selection = null;\r\n\r\n  setLayer(obj) {\r\n    this.ome = obj.ome;\r\n    this.structures = obj.structures;\r\n    this.layer = obj.layer;\r\n    this.roiLayers = obj.roiLayers;\r\n    this.selectedLayer = obj.selectedLayer;\r\n  }\r\n\r\n  setNextTile = (roiItem) => {\r\n    if (roiItem) {\r\n      this.selection = roiItem;\r\n      window.moveToRect(this.selection.roi.bounds);\r\n    }\r\n  };\r\n\r\n  findSmallestTreeItem(p) {\r\n    let minArea = Number.MAX_SAFE_INTEGER;\r\n    let resultItem;\r\n    for (let i = 0; i < this.roiLayers.length; i++) {\r\n      if (this.structures[i].visible) {\r\n        let treeItems = this.roiLayers[i].tree.search({\r\n          minX: p.x,\r\n          minY: p.y,\r\n          maxX: p.x,\r\n          maxY: p.y,\r\n        });\r\n        for (let treeItem of treeItems) {\r\n          let b = treeItem.roi.bounds;\r\n\r\n          if (pointInside(p, treeItem.roi)) {\r\n            let bArea = (b.right - b.left) * (b.bottom - b.top);\r\n            if (bArea < minArea) {\r\n              minArea = bArea;\r\n              resultItem = treeItem;\r\n              this.selectedLayer = i;\r\n            }\r\n          }\r\n        }\r\n      }\r\n    }\r\n    return resultItem;\r\n  }\r\n\r\n  changeItem = (e, fromButton, dir) => {\r\n    if (this.selection) {\r\n      let p = {\r\n        x: 0,\r\n        y: 0,\r\n      };\r\n\r\n      let direction = 0;\r\n      if (fromButton) {\r\n        if (dir === \"next\") {\r\n          direction = 1;\r\n        }\r\n        if (dir === \"before\") {\r\n          direction = 2;\r\n        }\r\n      } else {\r\n        if (e.key === \"ArrowRight\") {\r\n          //e.key not tested, because not in use\r\n          direction = 1;\r\n        }\r\n        if (e.key === \"ArrowLeft\") {\r\n          //e.key not tested, because not in use\r\n          direction = 2;\r\n        }\r\n      }\r\n\r\n      // if not classification structure\r\n      if (!this.structures[this.selectedLayer].classificationSubtype) {\r\n        let idx = this.roiLayers[this.selectedLayer].layer.regionRois.findIndex(\r\n          (element) => element === this.selection.roi\r\n        );\r\n\r\n        // get middlepoint of selected roi\r\n        let boundsSelection =\r\n          this.roiLayers[this.selectedLayer].layer.regionRois[idx].bounds;\r\n        p = {\r\n          x:\r\n            boundsSelection.right -\r\n            (boundsSelection.right - boundsSelection.left) * 0.5,\r\n          y:\r\n            boundsSelection.bottom -\r\n            (boundsSelection.bottom - boundsSelection.top) * 0.5,\r\n        };\r\n\r\n        switch (direction) {\r\n          case 1: //right\r\n            if (this.roiLayers[this.selectedLayer].layer.regionRois[idx + 1]) {\r\n              let bounds =\r\n                this.roiLayers[this.selectedLayer].layer.regionRois[idx + 1]\r\n                  .bounds;\r\n              p.x = bounds.right - (bounds.right - bounds.left) * 0.5;\r\n              p.y = bounds.bottom - (bounds.bottom - bounds.top) * 0.5;\r\n            }\r\n            break;\r\n          case 2: // left\r\n            if (this.roiLayers[this.selectedLayer].layer.regionRois[idx - 1]) {\r\n              let bounds =\r\n                this.roiLayers[this.selectedLayer].layer.regionRois[idx - 1]\r\n                  .bounds;\r\n              p.x = bounds.right - (bounds.right - bounds.left) * 0.5;\r\n              p.y = bounds.bottom - (bounds.bottom - bounds.top) * 0.5;\r\n            }\r\n            break;\r\n          default:\r\n            break;\r\n        }\r\n      }\r\n\r\n      this.selection = this.findSmallestTreeItem(p);\r\n\r\n      if (this.selection !== null && this.selection) {\r\n        window.moveToRect(this.selection.roi.bounds);\r\n      }\r\n    }\r\n  };\r\n\r\n  changeTile = (e) => {\r\n    if (this.selection) {\r\n      let p = {\r\n        x:\r\n          this.selection.roi.bounds.left +\r\n          (this.selection.roi.bounds.right - this.selection.roi.bounds.left) /\r\n            2,\r\n        y:\r\n          this.selection.roi.bounds.top +\r\n          (this.selection.roi.bounds.bottom - this.selection.roi.bounds.top) /\r\n            2,\r\n      };\r\n\r\n      // if no regions in this layer return\r\n      if (this.roiLayers[this.selectedLayer].layer.regionRois.length === 0) {\r\n        return;\r\n      }\r\n\r\n      // width ist width of roi in top left because top left is always a square\r\n      let width =\r\n        this.roiLayers[this.selectedLayer].layer.regionRois[0].bounds.right;\r\n\r\n      switch (e.key) {\r\n        case \"ArrowRight\": //e.key not tested, because not in use\r\n          if (p.x + width <= this.ome.sizeX) {\r\n            p.x = p.x + width;\r\n          } else {\r\n            p.x = this.ome.sizeX - 1;\r\n          }\r\n          e.preventDefault();\r\n          break;\r\n        case \"ArrowLeft\": //e.key not tested, because not in use\r\n          if (p.x - width >= 0) {\r\n            p.x = p.x - width;\r\n          }\r\n          e.preventDefault();\r\n          break;\r\n        case \"ArrowUp\": //e.key not tested, because not in use\r\n          if (p.y - width >= 0) {\r\n            p.y = p.y - width;\r\n          }\r\n          e.preventDefault();\r\n          break;\r\n        case \"ArrowDown\": //e.key not tested, because not in use\r\n          if (p.y + width <= this.ome.sizeY) {\r\n            p.y = p.y + width;\r\n          } else {\r\n            p.y = this.ome.sizeY - 1;\r\n          }\r\n          e.preventDefault();\r\n          break;\r\n        default:\r\n          break;\r\n      }\r\n\r\n      this.selection = this.findSmallestTreeItem(p);\r\n\r\n      if (this.selection !== null && this.selection) {\r\n        window.moveToRect(this.selection.roi.bounds);\r\n      }\r\n    }\r\n  };\r\n\r\n  /**\r\n   * Draw a custom cursor\r\n   */\r\n  drawCustomCursor(ctx, mousePosition, fkt) {\r\n    if (this.selection) {\r\n      ctx.beginPath();\r\n      ctx.globalAlpha = 1.0;\r\n      ctx.strokeStyle = \"#FF0000\";\r\n      ctx.lineWidth = 2 / fkt;\r\n      let b = this.selection.roi.bounds;\r\n      ctx.rect(b.left, b.top, b.right - b.left, b.bottom - b.top);\r\n      ctx.stroke();\r\n      ctx.closePath();\r\n    }\r\n  }\r\n\r\n  exit() {}\r\n\r\n  renderConfiguration() {\r\n    return null;\r\n  }\r\n}\r\n\r\nexport default TilesClassificationTool;\r\n","import React from \"react\";\r\n\r\nimport { pointInside } from \"../../utils/PolygonUtil\";\r\nimport Tool from \"./Tool\";\r\n\r\nimport { Typography, TextField, FormGroup } from \"@mui/material\";\r\n\r\nimport SketchColorPicker from \"../../../common/components/SketchColorPicker\";\r\n\r\nclass TilesHistoPointCountingTool extends Tool {\r\n  name = \"TilesHistoPointCountingTool\";\r\n  selection = null;\r\n  crosshairColor = \"#000000\";\r\n  crosshairLineWidth = 2;\r\n\r\n  setLayer(obj) {\r\n    this.ome = obj.ome;\r\n    this.structures = obj.structures;\r\n    this.layer = obj.layer;\r\n    this.roiLayers = obj.roiLayers;\r\n    this.selectedLayer = obj.selectedLayer;\r\n  }\r\n\r\n  setNextTile = (roiItem) => {\r\n    if (roiItem) {\r\n      this.selection = roiItem;\r\n      window.moveToRect(this.selection.roi.bounds);\r\n    }\r\n  };\r\n\r\n  findSmallestTreeItem(p) {\r\n    let minArea = Number.MAX_SAFE_INTEGER;\r\n    let resultItem;\r\n    for (let i = 0; i < this.roiLayers.length; i++) {\r\n      if (this.structures[i].visible) {\r\n        let treeItems = this.roiLayers[i].tree.search({\r\n          minX: p.x,\r\n          minY: p.y,\r\n          maxX: p.x,\r\n          maxY: p.y,\r\n        });\r\n        for (let treeItem of treeItems) {\r\n          let b = treeItem.roi.bounds;\r\n\r\n          if (pointInside(p, treeItem.roi)) {\r\n            let bArea = (b.right - b.left) * (b.bottom - b.top);\r\n            if (bArea < minArea) {\r\n              minArea = bArea;\r\n              resultItem = treeItem;\r\n              this.selectedLayer = i;\r\n            }\r\n          }\r\n        }\r\n      }\r\n    }\r\n    return resultItem;\r\n  }\r\n\r\n  /**\r\n   * Draw a custom cursor\r\n   */\r\n  drawCustomCursor(ctx, mousePosition, fkt) {\r\n    if (this.selection) {\r\n      // draw outer red rect that defines tile\r\n      ctx.beginPath();\r\n      ctx.globalAlpha = 1.0;\r\n      ctx.strokeStyle = \"#FF0000\";\r\n      ctx.lineWidth = 2 / fkt;\r\n      let b = this.selection.roi.bounds;\r\n      ctx.rect(b.left, b.top, b.right - b.left, b.bottom - b.top);\r\n      ctx.stroke();\r\n      ctx.closePath();\r\n\r\n      // draw crosshair\r\n      ctx.lineWidth = this.crosshairLineWidth / fkt;\r\n      let tileWidth = b.right - b.left;\r\n      let tileHeight = b.bottom - b.top;\r\n      let lineLengthWidth = (tileWidth / 2) * 0.9;\r\n      let lineLengthHeight = (tileHeight / 2) * 0.9;\r\n\r\n      // horizontal line left\r\n      ctx.beginPath();\r\n      ctx.strokeStyle = this.crosshairColor;\r\n      ctx.moveTo(b.left, b.top + tileHeight / 2);\r\n      ctx.lineTo(b.left + lineLengthWidth, b.top + tileHeight / 2);\r\n      ctx.closePath();\r\n      ctx.globalAlpha = this.crosshairOpacity;\r\n      ctx.stroke();\r\n\r\n      // horizontal line right\r\n      ctx.beginPath();\r\n      ctx.strokeStyle = this.crosshairColor;\r\n      ctx.moveTo(b.right, b.top + tileHeight / 2);\r\n      ctx.lineTo(b.right - lineLengthWidth, b.top + tileHeight / 2);\r\n      ctx.closePath();\r\n      ctx.globalAlpha = this.crosshairOpacity;\r\n      ctx.stroke();\r\n\r\n      // vertical line top\r\n      ctx.beginPath();\r\n      ctx.strokeStyle = this.crosshairColor;\r\n      ctx.moveTo(b.left + tileWidth / 2, b.top);\r\n      ctx.lineTo(b.left + tileWidth / 2, b.top + lineLengthHeight);\r\n      ctx.closePath();\r\n      ctx.globalAlpha = this.crosshairOpacity;\r\n      ctx.stroke();\r\n\r\n      // vertical line bottom\r\n      ctx.beginPath();\r\n      ctx.strokeStyle = this.crosshairColor;\r\n      ctx.moveTo(b.left + tileWidth / 2, b.bottom);\r\n      ctx.lineTo(b.left + tileWidth / 2, b.bottom - lineLengthHeight);\r\n      ctx.closePath();\r\n      ctx.globalAlpha = this.crosshairOpacity;\r\n      ctx.stroke();\r\n    }\r\n  }\r\n\r\n  exit() {}\r\n\r\n  renderConfiguration() {\r\n    return (\r\n      <div>\r\n        <Typography variant=\"h6\">{this.name}:</Typography>\r\n        <FormGroup row>\r\n          <Typography style={{ marginTop: \"6px\", marginRight: \"5px\" }}>\r\n            Crosshair color:\r\n          </Typography>\r\n          <SketchColorPicker\r\n            color={this.crosshairColor}\r\n            handleChange={(color) => {\r\n              this.crosshairColor = color;\r\n              window.forceSidebarUpdate();\r\n            }}\r\n          />\r\n        </FormGroup>\r\n\r\n        <br />\r\n\r\n        <FormGroup row style={{ marginBottom: \"25px\" }}>\r\n          <Typography style={{ width: \"150px\" }}>\r\n            Crosshair linewidth:\r\n          </Typography>\r\n          <TextField\r\n            style={{ width: \"40px\", marginTop: \"-3px\" }}\r\n            name=\"Textfield\"\r\n            value={this.crosshairLineWidth}\r\n            onChange={(e) => {\r\n              this.crosshairLineWidth = Number(e.target.value);\r\n              window.forceSidebarUpdate();\r\n            }}\r\n            inputProps={{\r\n              step: 1,\r\n              min: 1,\r\n              max: 30,\r\n              type: \"number\",\r\n            }}\r\n          />\r\n        </FormGroup>\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nexport default TilesHistoPointCountingTool;\r\n","import React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\n\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n\r\nconst styles = {\r\n  canvasComp: {\r\n    width: \"100%\",\r\n    height: \"100%\",\r\n  },\r\n  CompContainer: {\r\n    position: \"absolute\",\r\n    zIndex: 100,\r\n    display: \"inline-flex\",\r\n    flexDirection: \"column\",\r\n    alignItems: \"center\",\r\n    justifyContent: \"center\",\r\n    width: \"200px\",\r\n    height: \"200px\",\r\n    // resize: \"both\", // TODO: Add listener to allow window resizing that executes handleSizeChanged()\r\n    overflow: \"hidden\",\r\n    background: \"#D3D3D3\",\r\n    border: \"1px solid black\",\r\n  },\r\n};\r\n\r\nclass WindowTool extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n    if (props.componentRef) props.componentRef(this);\r\n    this.state = {\r\n      pos: { x: 0, y: 0 },\r\n      dragging: false,\r\n      fileId: null,\r\n      size: { height: 200, width: 200 },\r\n    };\r\n  }\r\n\r\n  componentDidMount() {\r\n    this.canvas = document.getElementById(\"WindowToolCanvas\");\r\n    this.ctx = this.canvas.getContext(\"2d\");\r\n    this.ctx.canvas.width = this.state.size.width;\r\n    this.ctx.canvas.height = this.state.size.height;\r\n    let r = this.props.rendererDict[\"Full\" + this.props.activeFileId];\r\n    let idx =\r\n      this.props.fullscreenFileIds.indexOf(this.props.activeFileId) === 0\r\n        ? 1\r\n        : 0;\r\n    this.setState({\r\n      pos: {\r\n        x: r.canvas.width / 2 - this.ctx.canvas.width / 2,\r\n        y: r.canvas.height / 2 - this.ctx.canvas.height / 2,\r\n      },\r\n      fileId: this.props.fullscreenFileIds[idx],\r\n    });\r\n    this.ctx.canvas.style.cursor = \"pointer\";\r\n  }\r\n\r\n  componentWillUnmount() {\r\n    document.removeEventListener(\"mousemove\", this.onMouseMove);\r\n    document.removeEventListener(\"mouseup\", this.onMouseUp);\r\n  }\r\n\r\n  componentDidUpdate() {\r\n    if (this.state.dragging) {\r\n      document.addEventListener(\"mousemove\", this.onMouseMove);\r\n      document.addEventListener(\"mouseup\", this.onMouseUp);\r\n    } else if (!this.state.dragging) {\r\n      document.removeEventListener(\"mousemove\", this.onMouseMove);\r\n      document.removeEventListener(\"mouseup\", this.onMouseUp);\r\n    }\r\n\r\n    let idx =\r\n      this.props.fullscreenFileIds.indexOf(this.props.activeFileId) === 0\r\n        ? 1\r\n        : 0;\r\n    let id = this.props.fullscreenFileIds[idx];\r\n    if (id !== this.state.fileId) {\r\n      this.setState({\r\n        fileId: id,\r\n      });\r\n    }\r\n  }\r\n\r\n  onMouseDown = (e) => {\r\n    if (e.button !== 0) return;\r\n    this.ctx.canvas.style.cursor = \"grab\";\r\n    this.setState({\r\n      dragging: true,\r\n    });\r\n    e.stopPropagation();\r\n    e.preventDefault();\r\n  };\r\n\r\n  onMouseUp = (e) => {\r\n    this.setState({ dragging: false });\r\n    this.ctx.canvas.style.cursor = \"pointer\";\r\n    e.stopPropagation();\r\n    e.preventDefault();\r\n  };\r\n\r\n  onMouseMove = (e) => {\r\n    if (!this.state.dragging) return;\r\n    let x = e.pageX - this.canvas.offsetWidth / 2;\r\n    let y = e.pageY - 64 - this.canvas.offsetHeight / 2;\r\n    let r = this.props.rendererDict[\"Full\" + this.state.fileId];\r\n    if (x > r.canvas.width - this.canvas.width)\r\n      x = r.canvas.width - this.canvas.width;\r\n    if (y > r.canvas.height - this.canvas.height)\r\n      y = r.canvas.height - this.canvas.height;\r\n    if (x < 0) x = 0;\r\n    if (y < 0) y = 0;\r\n    this.setState({\r\n      pos: {\r\n        x: x,\r\n        y: y,\r\n      },\r\n    });\r\n    e.stopPropagation();\r\n    e.preventDefault();\r\n  };\r\n\r\n  updateCanvas = () => {\r\n    this.ctx.canvas.width = this.state.size.width;\r\n    this.ctx.canvas.height = this.state.size.height;\r\n    let r = this.props.rendererDict[\"Full\" + this.state.fileId];\r\n    if (r) {\r\n      if (r.ctx) {\r\n        this.ctx.putImageData(\r\n          r.ctx.getImageData(\r\n            this.state.pos.x,\r\n            this.state.pos.y,\r\n            this.state.size.width,\r\n            this.state.size.height\r\n          ),\r\n          0,\r\n          0\r\n        );\r\n      }\r\n    }\r\n  };\r\n\r\n  handleSizeChanged = (size) => {\r\n    this.setState({ size });\r\n  };\r\n\r\n  render() {\r\n    const { classes } = this.props;\r\n    return (\r\n      <div\r\n        className={classes.CompContainer}\r\n        // onSizeChanged={this.handleSizeChanged}\r\n        style={{\r\n          left: this.state.pos.x + \"px\",\r\n          top: this.state.pos.y + \"px\",\r\n        }}\r\n      >\r\n        <canvas\r\n          style={{\r\n            height: this.state.size.height + \"px\",\r\n            width: this.state.size.width + \"px\",\r\n          }}\r\n          id={\"WindowToolCanvas\"}\r\n          className={classes.canvasComp}\r\n          onContextMenu={(event) => event.preventDefault()}\r\n          onMouseDown={this.onMouseDown}\r\n        />\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nWindowTool.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  componentRef: PropTypes.func,\r\n  rendererDict: PropTypes.object,\r\n  activeFileId: PropTypes.string,\r\n  fullscreenFileIds: PropTypes.array,\r\n};\r\n\r\nexport default withStyles(styles)(WindowTool);\r\n","// Copyright HS-Analysis GmbH, 2019\r\n\r\n// Framework imports\r\nimport React, { Component } from \"react\";\r\nimport PropTypes from \"prop-types\";\r\nimport { withRouter } from \"react-router-dom\";\r\n\r\n// External imports\r\nimport RBush from \"rbush\";\r\n\r\n// Material UI imports\r\nimport Dialog from \"@mui/material/Dialog\";\r\nimport DialogTitle from \"@mui/material/DialogTitle\";\r\nimport Grid from \"@mui/material/Grid\";\r\nimport IconButton from \"@mui/material/IconButton\";\r\nimport LinearProgress from \"@mui/material/LinearProgress\";\r\nimport LinkIcon from \"@mui/icons-material/Link\";\r\nimport LinkOffIcon from \"@mui/icons-material/LinkOff\";\r\nimport RemoveCircleIcon from \"@mui/icons-material/RemoveCircle\";\r\nimport Tooltip from \"@mui/material/Tooltip\";\r\nimport withStyles from \"@mui/styles/withStyles\";\r\n\r\n// HSA imports\r\nimport { ChannelsConfig } from \"./components/Histogram\";\r\nimport { debounce } from \"../common/utils/Utils\";\r\nimport { RegionROI, CommentROI, createRoisFromAnno } from \"./utils/ROI\";\r\nimport {\r\n  updateLayer,\r\n  calcBoundingBox,\r\n  createRegionRoi,\r\n} from \"./utils/PolygonUtil\";\r\nimport { withAllViewerContexts } from \"./contexts/AllViewerContexts\";\r\nimport { withResultTab } from \"./contexts/ResultTabContext\";\r\nimport { withTiles } from \"./contexts/TilesContext\";\r\nimport Backend from \"../common/utils/Backend\";\r\nimport ClassroomChat from \"./components/ClassroomChat\";\r\nimport FindFilesDialog, {\r\n  ProjectActionMode,\r\n} from \"../home/dialogs/FindFilesDialog\";\r\nimport Gallery from \"./components/Gallery\";\r\nimport OverlaySlider from \"./components/OverlaySlider\";\r\nimport Renderer from \"./components/Renderer\";\r\nimport SideBar from \"./components/SideBar\";\r\nimport VerticalToolBar, { Tools } from \"./components/VerticalToolBar\";\r\nimport Viewer3D from \"./components/3D-Viewer\";\r\n\r\n// HSA Tools\r\nimport ActiveLearningTool from \"./components/tools/ActiveLearningTool\";\r\nimport AITrainingTool from \"./components/tools/AITrainingTool\";\r\nimport CommentTool from \"./components/tools/CommentTool\";\r\nimport CopyTool from \"./components/tools/CopyTool\";\r\nimport EllipseTool from \"./components/tools/EllipseTool\";\r\nimport FillTool from \"./components/tools/FillTool\";\r\nimport FilterAnnotationsTool from \"./components/tools/FilterAnnotationsTool\";\r\nimport GridAnnotationTool from \"./components/tools/GridAnnotationTool\";\r\nimport GridTool from \"./components/tools/GridTool\";\r\nimport HeatmapTool from \"./components/tools/HeatmapTool\";\r\nimport InstantAnalysisTool from \"./components/tools/InstantAnalysisTool\";\r\nimport LandmarkTool from \"./components/tools/LandmarkTool\";\r\nimport MagicWandTool from \"./components/tools/MagicWandTool\";\r\nimport PenTool from \"./components/tools/PenTool\";\r\nimport PlotNearestRoiTool from \"./components/tools/PlotNearestRoiTool\";\r\nimport RectangleTool from \"./components/tools/RectangleTool\";\r\nimport RegionGrabCutTool from \"./components/tools/RegionGrabCutTool\";\r\nimport RegionGrowingTool from \"./components/tools/RegionGrowingTool\";\r\nimport RegionSAMTool from \"./components/tools/RegionSAMTool\";\r\nimport RegionTool from \"./components/tools/RegionTool\";\r\nimport RoiResizeTool from \"./components/tools/RoiResizeTool\";\r\nimport SelectionTool from \"./components/tools/SelectionTool\";\r\nimport StreamViewTool from \"./components/tools/StreamViewTool\";\r\nimport TilesClassificationTool from \"./components/tools/TilesClassificationTool\";\r\nimport TilesHistoPointCountingTool from \"./components/tools/TilesHistoPointCountingTool\";\r\nimport WindowTool from \"./components/WindowTool\";\r\n\r\nconst styles = {\r\n  root: {\r\n    overflow: \"hidden\",\r\n    position: \"relative\",\r\n    width: \"100%\",\r\n    height: \"100%\",\r\n    background: \"#EBEBEB\",\r\n  },\r\n  mainContainer: {\r\n    flexGrow: 0,\r\n    margin: 0,\r\n  },\r\n  excludeButton: {\r\n    position: \"absolute\",\r\n    top: 5,\r\n    right: 5,\r\n    zIndex: 100,\r\n  },\r\n  attachButton: {\r\n    position: \"absolute\",\r\n    top: 5,\r\n    right: 40,\r\n    zIndex: 100,\r\n    color: \"#666\",\r\n  },\r\n  dropfieldRoot: {\r\n    position: \"absolute\",\r\n    top: 0,\r\n    left: 0,\r\n    right: 0,\r\n    bottom: 0,\r\n    background: \"rgba(0, 0, 0, 0.514)\",\r\n    color: \"rgb(255, 255, 255)\",\r\n    zIndex: 100,\r\n    pointerEvents: \"none\",\r\n    border: \"dashed white 4px\",\r\n    textAlign: \"center\",\r\n    paddingTop: \"calc(50vh - 74px)\",\r\n    fontSize: \"20px\",\r\n  },\r\n  activeIndicatorBorder: {\r\n    position: \"absolute\",\r\n    pointerEvents: \"none\",\r\n    zIndex: 100,\r\n    height: \"100%\",\r\n    width: \"100%\",\r\n    border: \"solid #0673C1 4px\",\r\n  },\r\n};\r\n\r\nclass Viewer extends Component {\r\n  constructor(props) {\r\n    super(props);\r\n\r\n    this._isMounted = false;\r\n    let sideBarWidthObject = this.props.persistentStorage.load(\"sideBarWidth\");\r\n    let timeLineHeightObject =\r\n      this.props.persistentStorage.load(\"timeLineHeight\");\r\n\r\n    this.state = {\r\n      // Layout information\r\n      minSideBarWidth: 455,\r\n      minTimeLineHeight: 90,\r\n      minRendererWidth: 600,\r\n      minCanvasHeight: 100,\r\n      sideBarWidth: sideBarWidthObject ? sideBarWidthObject : 455,\r\n      timeLineHeight: timeLineHeightObject ? timeLineHeightObject : 170,\r\n      classRoomChatWidth: 0,\r\n      verticalToolBarWidth: 45,\r\n      verticalToolBarIconsHeight: 0,\r\n\r\n      // project-specific data\r\n      user: null,\r\n      project: null,\r\n      //fileId: 0,\r\n      viewerConfig: null,\r\n      ome: null,\r\n      omeDict: {},\r\n      splitscreenFileIds: [],\r\n      fullscreenFileIds: [],\r\n      showSplitscreenDropzone: false,\r\n      activeFileId: 0,\r\n      importProgress: -1,\r\n      //\r\n      t: 0,\r\n      c: 0,\r\n      z: 0,\r\n      minZ: 0,\r\n      maxZ: 0,\r\n      rois: [],\r\n      selRoi: null,\r\n      histogramConfig: {},\r\n      activeTool: Tools.NONE,\r\n      showGallery: false,\r\n      galleryType: \"\",\r\n      show3DViewer: false,\r\n      showPointCloud: false,\r\n      showTilesGallery: false,\r\n      updateStructure: true,\r\n      showTimeBar: false,\r\n      displayTimeBar: false,\r\n      showZStackBar: false,\r\n      showFileTreeView: true,\r\n      commentLayers: {},\r\n      landmarkLayers: {},\r\n      drawLayer: {\r\n        regionRois: [],\r\n        inverted: false,\r\n        clear: false,\r\n      },\r\n      containerKey: 0,\r\n      opacity: 1.2,\r\n      hC: null,\r\n\r\n      zoomRoi: false,\r\n      zoomLeft: 0,\r\n      zoomRight: 0,\r\n      zoomTop: 0,\r\n      zoomBottom: 0,\r\n      scrollGallery: \"auto\",\r\n      alruns: false,\r\n      exportSubstructures: false,\r\n      formDataAICockpit: null,\r\n      dimensionsUpdated: false,\r\n      gridSize: null,\r\n      annotatedFileIds: [],\r\n      showFullscreen: false,\r\n      showOverlay: false,\r\n      showWindowTool: false,\r\n      firstFullscreenOpacity: 100,\r\n      secFullscreenOpacity: 0,\r\n      fullscreenChain: true,\r\n      loadedAnnotationsCounter: 0,\r\n      frameArrayDict: {},\r\n      showFirstAccordion: true,\r\n      aiUsedStructures: [],\r\n      refreshState: false,\r\n      preparingStartJob: false,\r\n      annotationsAreReduced: false,\r\n    };\r\n    this.mousePosition = {\r\n      mouseX: 0,\r\n      mouseY: 0,\r\n    };\r\n    // frontend cached images\r\n    this.visibleImage = [];\r\n    // necessary splitscreen vars\r\n    this.rendererdict = {};\r\n    this.chainList = {};\r\n    this.chainListFileIds = {};\r\n    this.zoomObjectDict = {};\r\n    this.zoomObject = {\r\n      zoomRoi: false,\r\n      zoomBottom: 0,\r\n      zoomTop: 0,\r\n      zoomRight: 0,\r\n      zoomLeft: 0,\r\n    };\r\n\r\n    // apply model after training\r\n    this.applyModelAfterTraining = false;\r\n\r\n    // check if automatic training\r\n    this.automaticTraining = false;\r\n\r\n    // selected objects for active learning\r\n    this.selObjects = {\r\n      coordinates: [],\r\n    };\r\n\r\n    this.selObjs = false;\r\n    this.updateCount = 0;\r\n    this.graphData = 0;\r\n    this.changingFile = false;\r\n\r\n    // initialize tools\r\n    this.tools = [];\r\n    this.tools[Tools.PEN_ROI] = new PenTool();\r\n    this.tools[Tools.MAGICWAND_ROI] = new MagicWandTool();\r\n    this.tools[Tools.REGIONGROWING_ROI] = new RegionGrowingTool();\r\n    this.tools[Tools.REGIONGRABCUT_ROI] = new RegionGrabCutTool();\r\n    this.tools[Tools.REGIONSAM_ROI] = new RegionSAMTool();\r\n    this.tools[Tools.REGION_ROI] = new RegionTool();\r\n    this.tools[Tools.RECTANGLE_ROI] = new RectangleTool();\r\n    this.tools[Tools.COMMENT_ROI] = new CommentTool();\r\n    this.tools[Tools.ELLIPSE_ROI] = new EllipseTool();\r\n    this.tools[Tools.FILL] = new FillTool();\r\n    this.tools[Tools.COPY_ROI] = new CopyTool();\r\n    this.tools[Tools.SELECTION_ROI] = new SelectionTool();\r\n    this.tools[Tools.FILTERANNOTATIONS_ROI] = new FilterAnnotationsTool();\r\n    this.tools[Tools.PLOTNEAREST_ROI] = new PlotNearestRoiTool();\r\n    this.tools[Tools.AL] = new ActiveLearningTool();\r\n    this.tools[Tools.AITRAINING] = new AITrainingTool(this);\r\n    this.tools[Tools.GRIDTOOL] = new GridTool();\r\n    this.tools[Tools.GRIDANNOTATIONTOOL] = new GridAnnotationTool();\r\n    this.tools[Tools.SELECTION_Tile] = new TilesClassificationTool();\r\n    this.tools[Tools.POINTCOUNTING_Tile] = new TilesHistoPointCountingTool();\r\n    this.tools[Tools.LANDMARK] = new LandmarkTool();\r\n    this.tools[Tools.STREAMVIEW] = new StreamViewTool(); //new StreamViewTool();\r\n    this.tools[Tools.ROIRESIZE] = new RoiResizeTool();\r\n    this.tools[Tools.HEATMAP] = new HeatmapTool();\r\n\r\n    window.sharedToolParameters = {};\r\n\r\n    //initialize roi specific tools\r\n    this.structureTools = [];\r\n\r\n    // new indices of Layers (for old projects)\r\n    this.newLayerIndices = [];\r\n\r\n    this.setHistogramConfig = this.setHistogramConfig.bind(this);\r\n    this.createZoomObjectForRect = this.createZoomObjectForRect.bind(this);\r\n    this.resetRoiZoom = this.resetRoiZoom.bind(this);\r\n\r\n    this.saveChangesGallery = this.saveChangesGallery.bind(this);\r\n    this.applyDL = this.applyDL.bind(this);\r\n    this.setAlruns = this.setAlruns.bind(this);\r\n\r\n    this.updateViewer = this.updateViewer.bind(this);\r\n\r\n    this.galleryChangeTool = this.galleryChangeTool.bind(this);\r\n    this.onGallerychangePage = this.onGallerychangePage.bind(this);\r\n\r\n    this.resetRoiZoomInDict = this.resetRoiZoomInDict.bind(this);\r\n\r\n    window.getMousePosition = this.getMousePosition;\r\n    window.zoomToRect = this.zoomToRect;\r\n    window.moveToRect = this.moveToRect;\r\n\r\n    window.trainingProgress = this.trainingProgress;\r\n    window.galleryTrainingProgress = this.galleryTrainingProgress;\r\n    window.toggleClassRoomChat = this.toggleClassRoomChat;\r\n    window.setGridSize = this.setGridSize;\r\n    window.onSelectFile = this.onSelectFile;\r\n\r\n    document.onmousedown = () => {\r\n      if (this._isMounted) {\r\n        this.forceUpdate();\r\n      }\r\n    };\r\n\r\n    document.onmouseup = () => {\r\n      if (this._isMounted) {\r\n        this.forceUpdate();\r\n      }\r\n    };\r\n\r\n    document.onmousemove = (e) => {\r\n      this.mousePosition = {\r\n        mouseX: e.pageX,\r\n        mouseY: e.pageY,\r\n      };\r\n    };\r\n\r\n    // document.onwheel = () => {\r\n    //   // TODO: [HWB-911] Find solution that only updates on first load of renderer\r\n    //   const { showGallery, show3DViewer, showTilesGallery } = this.state;\r\n    //   if (!showGallery && !show3DViewer && !showTilesGallery) {\r\n    //     this.forceUpdate();\r\n    //   }\r\n    // };\r\n\r\n    // initialize ProjectContext with Viewer Component Parameter\r\n    this.props.projectContext.init(this);\r\n\r\n    Backend.requestProject(\r\n      this.props.id,\r\n      (res) => {\r\n        if (!res.newMappingsFound && res.allUniquelyMapped) {\r\n          this.loadProject();\r\n        } else {\r\n          this.FindMissingFiles.show(res, () => {\r\n            this.loadProject();\r\n          });\r\n        }\r\n      },\r\n      (error) => window.openErrorDialog(error)\r\n    );\r\n  }\r\n\r\n  loadProject = () => {\r\n    Backend.loadProject(\r\n      {\r\n        id: this.props.id,\r\n        isOpenProject: true,\r\n      },\r\n      (project) => {\r\n        if (project.projectData) {\r\n          if (project.files.length > project.projectData.files.length) {\r\n            project.projectData.files = project.files.map((file) => {\r\n              file.annotations = [];\r\n              return file;\r\n            });\r\n          }\r\n          // Attempt to load project data from saved json.\r\n          const idMapping = project.files.reduce((map, file) => {\r\n            map[file.fileName + file.scene] = file.id;\r\n            return map;\r\n          }, {});\r\n\r\n          project.projectData.files = project.projectData.files.map((file) => {\r\n            const fileId = idMapping[file.fileName + file.scene];\r\n            if (!fileId) {\r\n              console.error(\r\n                \"Error loading files: Id mapping failed, was the path to the slides changed?\"\r\n              );\r\n            }\r\n            return { ...file, id: fileId };\r\n          });\r\n\r\n          project.projectData.files = project.projectData.files.map((file) => {\r\n            const fileId = idMapping[file.fileName + file.scene];\r\n            if (!fileId) {\r\n              console.error(\r\n                \"Error loading files: Id mapping failed, was the path to the slides changed?\"\r\n              );\r\n            }\r\n            return { ...file, id: fileId };\r\n          });\r\n\r\n          this.setMountedState({\r\n            formDataAICockpit: JSON.parse(\r\n              project.projectData.formDataAICockpit\r\n            ),\r\n          });\r\n\r\n          if (project.projectData.biggestAnnotationsFileSizeInMB > 200) {\r\n            this.loadAnnotationsFromDB = true;\r\n          }\r\n        } else {\r\n          // Load presets from general config.\r\n          for (let structure of project.viewerConfig.project.structures) {\r\n            if (structure.toolPresets) {\r\n              for (const toolName of Object.keys(structure.toolPresets)) {\r\n                const tool = structure.tools.find(\r\n                  (tool) => tool.name === toolName\r\n                );\r\n                if (tool) {\r\n                  for (const [paramName, value] of Object.entries(\r\n                    structure.toolPresets[toolName]\r\n                  )) {\r\n                    const parameter = tool.parameters.find(\r\n                      (parameter) => parameter.name === paramName\r\n                    );\r\n                    if (parameter) {\r\n                      parameter.ui.default = value.default;\r\n                      if (parameter.ui.default[0] === \"[\") {\r\n                        // if e.g. range slider\r\n                        parameter.ui.default = JSON.parse(parameter.ui.default);\r\n                      } else if (parameter.type === \"int\") {\r\n                        parameter.ui.default = parseInt(\r\n                          parameter.ui.default,\r\n                          10\r\n                        );\r\n                      } else if (parameter.type === \"float\") {\r\n                        parameter.ui.default = parseFloat(parameter.ui.default);\r\n                      }\r\n                    }\r\n                  }\r\n                }\r\n              }\r\n            }\r\n          }\r\n        }\r\n        // display project name in navigationBar\r\n        window.setNavigationbarTitle(\r\n          `${project.name} (${project.viewerConfig.project.label})`\r\n        );\r\n        let commentLayersObject = {};\r\n        let landmarkLayersObject = {};\r\n        let frameArrayDict = {};\r\n\r\n        for (let file of project.files) {\r\n          frameArrayDict[file.id] = {};\r\n          commentLayersObject[file.id] = { commentRois: [] };\r\n          landmarkLayersObject[file.id] = { landmarkRois: [] };\r\n\r\n          if (!(file.id in this.rendererdict)) this.rendererdict[file.id] = {};\r\n          if (project.projectData) {\r\n            if (\"tMatrices\" in project.projectData) {\r\n              if (project.projectData.tMatrices !== null) {\r\n                if (file.id in project.projectData.tMatrices) {\r\n                  this.props.tiles.setTransformationMatnFactnOff(\r\n                    project.projectData.tMatrices[file.id],\r\n                    file.id,\r\n                    project.projectData.tFactors[file.id],\r\n                    project.projectData.tOffsets[file.id]\r\n                  );\r\n                }\r\n              }\r\n            }\r\n          }\r\n        }\r\n\r\n        if (project.projectData) {\r\n          let projectDataFiles = project.projectData.files;\r\n          for (let j = 0; j < projectDataFiles.length; j++) {\r\n            frameArrayDict[projectDataFiles[j].id] = {};\r\n            // in case of old projects => create empty commentLayersObject\r\n            if (!commentLayersObject[projectDataFiles[j].id]) {\r\n              commentLayersObject[projectDataFiles[j].id] = { commentRois: [] };\r\n            }\r\n\r\n            if (!landmarkLayersObject[projectDataFiles[j].id]) {\r\n              landmarkLayersObject[projectDataFiles[j].id] = {\r\n                landmarkRois: [],\r\n              };\r\n            }\r\n\r\n            if (projectDataFiles[j].commentRois) {\r\n              commentLayersObject[projectDataFiles[j].id].commentRois =\r\n                projectDataFiles[j].commentRois.map((e) => {\r\n                  return new CommentROI(\r\n                    e.regions,\r\n                    e.color,\r\n                    e.type,\r\n                    e.commentValue,\r\n                    e.computedValue\r\n                  );\r\n                });\r\n            }\r\n            if (projectDataFiles[j].landmarkRois) {\r\n              landmarkLayersObject[projectDataFiles[j].id].landmarkRois =\r\n                projectDataFiles[j].landmarkRois.map((e) => {\r\n                  return new CommentROI(\r\n                    e.regions,\r\n                    e.color,\r\n                    e.type,\r\n                    e.commentValue,\r\n                    e.computedValue\r\n                  );\r\n                });\r\n            }\r\n            const fileIdx = j;\r\n            let dataFileIdx = projectDataFiles.findIndex((file) => {\r\n              return file.id === project.files[fileIdx].id;\r\n            });\r\n            if (dataFileIdx === -1) {\r\n              console.info(\r\n                \"saved file and project file do not match, comparing by name and scene\"\r\n              );\r\n              dataFileIdx = projectDataFiles.findIndex((file) => {\r\n                return (\r\n                  file.fileName === project.files[fileIdx].fileName &&\r\n                  file.scene === project.files[fileIdx].scene\r\n                );\r\n              });\r\n            }\r\n            if (dataFileIdx > -1) {\r\n              const projectDataFile = projectDataFiles[dataFileIdx];\r\n              const projectFile = project.files[fileIdx];\r\n              projectFile.excludeScene = projectDataFile.excludeScene;\r\n              projectFile.fullyAnnotated = projectDataFile.fullyAnnotated;\r\n              projectFile.annotated = projectDataFile.annotated === true;\r\n              projectFile.saved = projectDataFile.saved;\r\n              projectFile.classId = projectDataFile.classId;\r\n            } else {\r\n              // this should not happen\r\n              console.log(\r\n                \"file data could not be matched with saved data for file:\",\r\n                project.files[fileIdx].fileName,\r\n                project.files[fileIdx].scene\r\n              );\r\n            }\r\n          }\r\n        }\r\n\r\n        Backend.getCurrentUser((user) => {\r\n          this.setMountedState({ user: user.fullName });\r\n          let userPermissions = this.props.projectContext.userPermissions;\r\n          userPermissions.canExportModels = user.group.canExportModels;\r\n          userPermissions.canImportModels = user.group.canImportModels;\r\n          this.props.projectContext.setState({\r\n            user: user.fullName,\r\n            userPermissions,\r\n          });\r\n        });\r\n\r\n        this.migrateTools(project);\r\n\r\n        this.setMountedState({\r\n          project,\r\n          frameArrayDict: frameArrayDict,\r\n          commentLayers: commentLayersObject,\r\n          landmarkLayers: landmarkLayersObject,\r\n        });\r\n\r\n        this.initLayersAndStructures();\r\n\r\n        let openedFileId = this.props.persistentStorage.load(\"opened_file_id\");\r\n        openedFileId = openedFileId ? openedFileId : project.files[0].id;\r\n        //Set correct aFileID\r\n        if (this.props.persistentStorage.load(\"ActiveFileId\")) {\r\n          this.setMountedState({\r\n            activeFileId: this.props.persistentStorage.load(\"ActiveFileId\"),\r\n          });\r\n        } else {\r\n          this.setMountedState({ activeFileId: openedFileId });\r\n        }\r\n        //Set active FileID as first splitscreenFileID - needed if new project\r\n        if (!this.props.persistentStorage.load(\"SplitscreenFileIds\")) {\r\n          let sFileIds = this.state.splitscreenFileIds;\r\n          sFileIds.push(this.state.activeFileId);\r\n          this.setMountedState({\r\n            splitscreenFileIds: sFileIds,\r\n          });\r\n        }\r\n\r\n        let fsFileIds = this.state.fullscreenFileIds;\r\n        fsFileIds.push(this.state.activeFileId);\r\n        this.setMountedState({\r\n          fullscreenFileIds: fsFileIds,\r\n        });\r\n\r\n        if (this.state.splitscreenFileIds) {\r\n          if (\r\n            !this.state.splitscreenFileIds.includes(this.state.activeFileId)\r\n          ) {\r\n            // make sure that activeFileId is in SplitscreenFileIds\r\n            let sFileIds = this.state.splitscreenFileIds;\r\n            sFileIds.push(this.state.activeFileId);\r\n            this.setMountedState({\r\n              splitscreenFileIds: sFileIds,\r\n            });\r\n          }\r\n          let zoom = null;\r\n          let newZoomObjectDict = null;\r\n          for (const value of Object.values(this.state.splitscreenFileIds)) {\r\n            //load file with needed information\r\n            this.openFile(value, this.props.id, false);\r\n            //load zoomstate\r\n            zoom = this.props.persistentStorage.load(\"zoomObject\" + value);\r\n\r\n            newZoomObjectDict = this.zoomObjectDict;\r\n            if (zoom) {\r\n              newZoomObjectDict[value] = JSON.parse(JSON.stringify(zoom));\r\n            } else {\r\n              newZoomObjectDict[value] = {\r\n                zoomRoi: false,\r\n                zoomLeft: 0,\r\n                zoomRight: 0,\r\n                zoomTop: 0,\r\n                zoomBottom: 0,\r\n              };\r\n            }\r\n          }\r\n          this.zoomObjectDict = newZoomObjectDict;\r\n        } else {\r\n          //this.props.tiles.setFileId(openedFileId); //not needed anymore?\r\n          this.openFile(openedFileId, this.props.id);\r\n        }\r\n\r\n        var groupBy = function (xs, key) {\r\n          return xs.reduce(function (rv, x) {\r\n            // Making sure not to bunch virtual slides into eachother.\r\n            if (x[key].endsWith(\"empty_file.png\")) {\r\n              (rv[x[\"fileName\"]] = rv[x[key]] || []).push(x);\r\n              return rv;\r\n            }\r\n            // Normal sorting I don't understand, but it works.\r\n            (rv[x[key]] = rv[x[key]] || []).push(x);\r\n            return rv;\r\n          }, {});\r\n        };\r\n\r\n        const fileGroups = groupBy(project.files, \"sourcePath\");\r\n        const fileNames = Object.keys(fileGroups).sort();\r\n        const sortedFiles = [];\r\n        for (let fileName of fileNames) {\r\n          sortedFiles.push(...fileGroups[fileName]);\r\n        }\r\n        project.files = sortedFiles;\r\n\r\n        //this.props.tiles.setFileId(openedFileId); //not needed anymore?\r\n        let viewerType =\r\n          this.state.viewerConfig.project.projectStringProperties[\"ViewerType\"];\r\n        this.setMountedState({\r\n          showGallery: viewerType == \"Gallery\",\r\n          galleryType:\r\n            viewerType == \"Gallery\" ? \"FilesGallery\" : \"AnnotationGallery\",\r\n        });\r\n        this.setSideBarWidth();\r\n        this.props.projectHistory.init(this);\r\n        this.props.projectContext.initProject(project);\r\n\r\n        let contextStateObject = { project };\r\n\r\n        if (!project.isOwner) {\r\n          contextStateObject.groupPermissions = {};\r\n          for (const [key, value] of Object.entries(project.group)) {\r\n            if (typeof value === \"boolean\") {\r\n              contextStateObject.groupPermissions[key] = value;\r\n            }\r\n          }\r\n        }\r\n        contextStateObject.project = project;\r\n        contextStateObject.fileGroups = fileGroups;\r\n        this.props.projectContext.setState(contextStateObject);\r\n      },\r\n      (err) => {\r\n        console.error(err);\r\n        window.openErrorDialog(err.toString());\r\n      }\r\n    );\r\n  };\r\n\r\n  setSelLayerConfig = () => {\r\n    // set selected layer defined in config\r\n    let idx = this.props.projectContext.structures.findIndex(\r\n      (element) => element.defaultSelected\r\n    );\r\n    if (idx !== -1) {\r\n      this.setSelectedLayer(idx);\r\n    }\r\n  };\r\n\r\n  //take tool structure from viewerconfig and set saved tool parameters if same type\r\n  migrateTools = (project) => {\r\n    if (project.projectData) {\r\n      for (let [\r\n        structureIndex,\r\n        structure,\r\n      ] of project.projectData.structures.entries()) {\r\n        for (let [toolIndex, tool] of structure.tools.entries()) {\r\n          let viewerConfigTool = project.viewerConfig.tools.find(\r\n            (vTool) => vTool.name === tool.name\r\n          );\r\n          if (\r\n            typeof viewerConfigTool === \"undefined\" &&\r\n            project.viewerConfig.project.structures[structureIndex]\r\n          ) {\r\n            //if tool was changed in project config\r\n            tool =\r\n              project.viewerConfig.project.structures[structureIndex].tools[\r\n                toolIndex\r\n              ];\r\n            if (tool) {\r\n              viewerConfigTool = project.viewerConfig.tools.find(\r\n                (vTool) => vTool.name === tool.name\r\n              );\r\n            }\r\n          }\r\n          if (viewerConfigTool) {\r\n            let transformedVParameters = this.generateToolParameterDict(\r\n              viewerConfigTool.parameters\r\n            );\r\n            for (const [key, value] of Object.entries(transformedVParameters)) {\r\n              if (key in tool.parameters) {\r\n                if (typeof tool.parameters[key] === typeof value) {\r\n                  transformedVParameters[key] = tool.parameters[key];\r\n                }\r\n              }\r\n            }\r\n            tool.parameters = transformedVParameters;\r\n          }\r\n        }\r\n      }\r\n    }\r\n  };\r\n\r\n  makeProjectCompatible = (project) => {\r\n    // does not work in all cases --> needs to get fixed\r\n    window.showWarningSnackbar(\r\n      \"Please wait. Project was created with old version. Adjusting project for new version ...\"\r\n    );\r\n\r\n    let sructuresWithNoId = [];\r\n    if (project.projectData) {\r\n      sructuresWithNoId = project.projectData.structures.filter(\r\n        (element) => element.id !== 0\r\n      );\r\n    }\r\n\r\n    if (sructuresWithNoId.length === 0 && project.projectData) {\r\n      project.projectData.structures.forEach((projDataStr) => {\r\n        let idx = project.viewerConfig.project.structures.findIndex(\r\n          (viewerConfStr) => viewerConfStr.label === projDataStr.label\r\n        );\r\n        // get indices of old structures to adjust roiLayers (annotations)\r\n        if (!this.newLayerIndices.includes(idx)) {\r\n          this.newLayerIndices.push(idx);\r\n        }\r\n      });\r\n      project.projectData.structures = project.viewerConfig.project.structures;\r\n    }\r\n\r\n    // load all files and change id of annotations to new position\r\n    this.loadAllFiles();\r\n  };\r\n\r\n  loadAllFiles = () => {\r\n    const { project } = this.state;\r\n\r\n    let allRoiLayers = {};\r\n    for (let file of this.state.project.files) {\r\n      allRoiLayers[file.id] = [];\r\n      if (project.viewerConfig.project.structures.length > 0) {\r\n        allRoiLayers[file.id] = project.viewerConfig.project.structures.map(\r\n          () => {\r\n            return {\r\n              layer: {\r\n                regionRois: [],\r\n                inverted: false,\r\n              },\r\n              tree: new RBush(),\r\n            };\r\n          }\r\n        );\r\n      }\r\n    }\r\n\r\n    let newProjectObject = project;\r\n    let newRoiLayers = [];\r\n    let files = project.files;\r\n    let projId = project.id;\r\n    if (newProjectObject.projectData !== null) {\r\n      let i = 0;\r\n      let fileAnnotationsLoaded = 0;\r\n      let loadAnnotationsFunction = () => {\r\n        newRoiLayers = allRoiLayers;\r\n        // if all annotations of files loaded save annotations with adjusted id\r\n        if (fileAnnotationsLoaded === newProjectObject.files.length - 1) {\r\n          this.createAnnotationsProjectModel(newRoiLayers);\r\n        }\r\n        fileAnnotationsLoaded = fileAnnotationsLoaded + 1;\r\n      };\r\n      for (let file of newProjectObject.files) {\r\n        this.loadAnnotations(\r\n          file,\r\n          files[i].id,\r\n          projId,\r\n          allRoiLayers,\r\n          loadAnnotationsFunction\r\n        );\r\n        i = i + 1;\r\n      }\r\n    }\r\n  };\r\n\r\n  countVisibleStructures = () => {\r\n    return this.state.project.viewerConfig.project.structures.reduce(\r\n      (acc, cur) => acc + (cur.visible ? 1 : 0),\r\n      0\r\n    );\r\n  };\r\n\r\n  createAnnotationsProjectModel = (newRoiLayers) => {\r\n    const { project } = this.state;\r\n\r\n    const projectModel = {\r\n      id: project.id,\r\n      files: project.files.map((e) => ({\r\n        id: e.id,\r\n        annotations: newRoiLayers[e.id].reduce((acc, e, i) => {\r\n          if (e.layer.regionRois.length > 0) {\r\n            acc.push({\r\n              id: i,\r\n              geoJSON: {\r\n                type: \"MultiPolygon\",\r\n                coordinates: e.layer.regionRois.map((c) => c.regions),\r\n                withHoles: true,\r\n                color1: e.layer.regionRois.map((c) => [c.color]),\r\n                subtype: e.layer.regionRois.map((c) => [c.isSubtype]),\r\n                name: e.layer.regionRois.map((c) => [c.subtypeName]),\r\n                aiAnnotated: e.layer.regionRois.map((c) => [c.aiAnnotated]),\r\n                isAnnotated: e.layer.regionRois.map((c) => [c.isAnnotated]),\r\n                isLabeled: e.layer.regionRois.map((c) => [c.isLabeled]),\r\n                isSelObj: e.layer.regionRois.map((c) => [c.isSelObj]),\r\n                isSaved: e.layer.regionRois.map((c) => [c.isSaved]),\r\n                z: e.layer.regionRois.map((c) => [c.z]),\r\n                comment: e.layer.regionRois.map((c) => [c.comment]),\r\n                tileName: e.layer.regionRois.map((c) => [c.tileName]),\r\n                structureId: e.layer.regionRois.map((c) => [c.structureId]),\r\n                isObject: e.layer.regionRois.map((c) => [c.isObject]),\r\n                frequencyClass: e.layer.regionRois.map((c) => [\r\n                  c.frequencyClass,\r\n                ]),\r\n              },\r\n            });\r\n          }\r\n          return acc;\r\n        }, []),\r\n      })),\r\n      onlyAnnotations: true,\r\n    };\r\n\r\n    // save only annotations of project with adjusted id\r\n    this.saveWithSpinloader(projectModel);\r\n  };\r\n\r\n  setAIFormData = (formDataAICockpit) => {\r\n    const { project } = this.state;\r\n    this.setMountedState({ formDataAICockpit: formDataAICockpit });\r\n    // start job if defined in project config\r\n    if (\r\n      \"AutoSaveStartJob\" in project.viewerConfig.project.projectProperties &&\r\n      project.viewerConfig.project.projectProperties[\"AutoSaveStartJob\"] &&\r\n      !this.state.preparingStartJob &&\r\n      this.state.project.state === \"ready\"\r\n    ) {\r\n      this.setState({ preparingStartJob: true });\r\n      this.saveFunction();\r\n      Backend.setProjectsPending([this.state.project.id], () => {\r\n        console.log(\"project state changed to pending:\", this.state.project.id);\r\n      });\r\n\r\n      // return to Home Screen\r\n      let { history } = this.props;\r\n      setTimeout(\r\n        function () {\r\n          history.push(\"/\");\r\n        },\r\n        3000,\r\n        history\r\n      );\r\n    }\r\n  };\r\n\r\n  alterStructure = (c) => {\r\n    let project = this.state.project;\r\n    // load svg's text into blob so we can access it\r\n    for (let tool of project.viewerConfig.tools) {\r\n      if (!this.tools[tool.name]) {\r\n        this.tools[tool.name] = new InstantAnalysisTool(tool, this);\r\n      }\r\n    }\r\n    // load viewer configuration\r\n    let allToolNames = Object.values(project.viewerConfig.tools).map(\r\n      (v) => v.name\r\n    );\r\n    let toolParameters = [];\r\n    for (let t of c.tools) {\r\n      if (!window.sharedToolParameters[t.name]) {\r\n        window.sharedToolParameters[t.name] = this.generateToolParameterDict(\r\n          t.parameters\r\n        );\r\n      }\r\n      if (!toolParameters[t.name]) {\r\n        if (t.shared) {\r\n          toolParameters[t.name] = window.sharedToolParameters[t.name];\r\n        } else {\r\n          toolParameters[t.name] = this.generateToolParameterDict(t.parameters);\r\n        }\r\n      }\r\n    }\r\n\r\n    return Object.assign(c, {\r\n      isSubtype: c.parentId > 0 ? true : false,\r\n      hasChild: this.structureHasChild(c.id),\r\n      subtypeLevel: this.findStructureSubtypeLevel(c.parentId),\r\n      tools: c.tools.map((t) => ({\r\n        name: t.name,\r\n        parameters: toolParameters[t.name],\r\n      })),\r\n      classFrequencies: {\r\n        class_0: 0,\r\n        class_1: 0,\r\n        class_2: 0,\r\n        class_3: 0,\r\n        class_4: 0,\r\n        class_5: 0,\r\n        class_6: 0,\r\n      },\r\n      allToolNames: allToolNames,\r\n      visible: true,\r\n      isUnfolded: c.parentId > 0 ? false : true,\r\n      showSubtypes: false,\r\n      addSubtypeText: \"\",\r\n    });\r\n  };\r\n\r\n  updateGlobalZ = (z, minZ, maxZ) => {\r\n    this.setMountedState({ z, minZ, maxZ });\r\n  };\r\n\r\n  updateGlobalT = (t) => {\r\n    this.setMountedState({ t: t });\r\n  };\r\n\r\n  structureHasChild = (id) => {\r\n    // check if structure (id) has child --> check if other structure has parentId of structure\r\n    let hasChild = false;\r\n    this.state.project.viewerConfig.project.structures.forEach((element) => {\r\n      if (element.parentId === id) {\r\n        hasChild = true;\r\n      }\r\n    });\r\n    return hasChild;\r\n  };\r\n\r\n  findStructureSubtypeLevel = (parentId, subtypeLevelCount = 0) => {\r\n    // return subtype level of structure --> calculate number of parent structures recursively\r\n    let parentIndex = this.getParentIndex(parentId);\r\n    if (parentIndex !== -1) {\r\n      return this.findStructureSubtypeLevel(\r\n        this.state.project.viewerConfig.project.structures[parentIndex]\r\n          .parentId,\r\n        subtypeLevelCount + 1\r\n      );\r\n    } else {\r\n      return subtypeLevelCount;\r\n    }\r\n  };\r\n\r\n  getParentIndex = (parentId) => {\r\n    let { structures } = this.props.projectContext;\r\n    if (structures.length < 1) {\r\n      structures = this.state.project.viewerConfig.project.structures;\r\n    }\r\n    // return index of parent structures in all structures\r\n    let parentIndex = structures.findIndex(\r\n      (element) => element.id === parentId\r\n    );\r\n    return parentIndex;\r\n  };\r\n\r\n  getParentIndexLayer = (structure) => {\r\n    const { structures } = this.props.projectContext;\r\n    // get index of parent roilayer\r\n    let index = structures.findIndex((element) => element.id === structure.id);\r\n    while (\r\n      structures[index].subtypeLevel !== 0 &&\r\n      structures[index].classificationSubtype\r\n    ) {\r\n      let pIndex = this.getParentIndex(structures[index].parentId);\r\n      if (pIndex >= 0) index = pIndex;\r\n      else break;\r\n    }\r\n    return structures.findIndex((element) => element === structures[index]);\r\n  };\r\n\r\n  clearOtherLayers = () => {\r\n    const currentFileId = this.props.projectContext.fileId;\r\n    let project = this.state.project;\r\n    if (project.projectData) {\r\n      let roiLayers = this.props.projectContext.roiLayers;\r\n      for (let file of project.files) {\r\n        if (file.id === currentFileId) {\r\n          continue;\r\n        }\r\n        roiLayers[file.id] = [];\r\n        roiLayers[file.id] = project.projectData.structures.map((c) => {\r\n          return {\r\n            id: c.id,\r\n            layer: {\r\n              regionRois: [],\r\n              inverted: false,\r\n            },\r\n            tree: new RBush(),\r\n          };\r\n        });\r\n      }\r\n      this.props.projectContext.setState({ roiLayers });\r\n    }\r\n  };\r\n\r\n  updateStructuresWithPersistentStorage = (structures) => {\r\n    // check structures\r\n    const structuresStateList =\r\n      this.props.persistentStorage.loadProjectTypeValue(\r\n        this.state.project.type,\r\n        \"structuresStateList\"\r\n      );\r\n    if (structuresStateList === null) return;\r\n    if (structuresStateList.length === structures.length) {\r\n      for (let i = 0; i < structures.length; i++) {\r\n        structures[i].isUnfolded = structuresStateList[i].isUnfolded;\r\n        structures[i].visible = structuresStateList[i].visible;\r\n        structures[i].showSubtypes = structuresStateList[i].showSubtypes;\r\n      }\r\n    }\r\n  };\r\n\r\n  initLayersAndStructures = () => {\r\n    let project = this.state.project;\r\n\r\n    // load svg's text into blob so we can access it\r\n    for (let tool of project.viewerConfig.tools) {\r\n      this.tools[tool.name] = new InstantAnalysisTool(tool, this);\r\n    }\r\n    this.setMountedState({ viewerConfig: project.viewerConfig });\r\n    let roiLayers = {};\r\n    let commentLayers = {};\r\n    let landmarkLayers = {};\r\n\r\n    // Init layers and structures set by project config in <module>.json\r\n    let structures = project.viewerConfig.project.structures.map((c) => {\r\n      return this.alterStructure(c);\r\n    });\r\n\r\n    // Init layers and structures that were previously manually added and saved to project.json.\r\n    for (let file of project.files) {\r\n      roiLayers[file.id] = [];\r\n      commentLayers[file.id] = { commentRois: [] };\r\n      landmarkLayers[file.id] = { landmarkRois: [] };\r\n      if (project.viewerConfig.project.structures.length > 0) {\r\n        if (\r\n          project.projectData &&\r\n          project.projectData.structures &&\r\n          project.projectData.structures[0].id !== 0\r\n        ) {\r\n          roiLayers[file.id] = project.projectData.structures.map((c) => {\r\n            return {\r\n              id: c.id,\r\n              layer: {\r\n                regionRois: [],\r\n                inverted: false,\r\n              },\r\n              tree: new RBush(),\r\n            };\r\n          });\r\n        } else {\r\n          roiLayers[file.id] = project.viewerConfig.project.structures.map(\r\n            (c) => {\r\n              return {\r\n                id: c.id,\r\n                layer: {\r\n                  regionRois: [],\r\n                  inverted: false,\r\n                },\r\n                tree: new RBush(),\r\n              };\r\n            }\r\n          );\r\n        }\r\n      }\r\n    }\r\n\r\n    // load data from project.json\r\n    if (project.projectData) {\r\n      let histogramConfig = this.state.histogramConfig;\r\n      for (let file of project.projectData.files) {\r\n        histogramConfig[file.id] = file.histogram;\r\n        for (let i = 0; i < project.projectData.structures.length; i++) {\r\n          // if structure from config is not same as saved one --> add dynamic structure\r\n          if (\r\n            !structures[i] ||\r\n            structures[i].id !== project.projectData.structures[i].id\r\n          ) {\r\n            // add additional dynamic structure at index\r\n            structures.splice(\r\n              i,\r\n              0,\r\n              this.alterStructure({\r\n                dynamic: true,\r\n                visible: true,\r\n                isUnfolded: true,\r\n                classificationSubtype: false,\r\n                parentId: 0,\r\n                showSubtypes: false,\r\n                subtypeLevel: 0,\r\n                allToolNames: structures[0].allToolNames,\r\n                tools: project.viewerConfig.project.dynamicStructure.tools,\r\n              })\r\n            );\r\n            const structure = project.projectData.structures[i];\r\n            // make correct value for unfolded\r\n            if (structure.parentId) {\r\n              structures[i].isUnfolded = false;\r\n            }\r\n            structures[i] = Object.assign(structures[i], structure);\r\n\r\n            // merge stored parameters into the toolsconfig\r\n            for (let t of structures[i].tools) {\r\n              let storedParams = structure.tools.find((c) => c.name === t.name);\r\n              if (storedParams) {\r\n                Object.assign(t.parameters, storedParams.parameters);\r\n              }\r\n            }\r\n          } else {\r\n            const structure = project.projectData.structures[i];\r\n            if (structure.id === 0) {\r\n              // for old projects\r\n              // do nothing\r\n            } else {\r\n              // merge stored parameters into the toolsconfig\r\n              for (const toolIndex in structure.tools) {\r\n                let t = structure.tools[toolIndex];\r\n                let storedParams = structure.tools.find(\r\n                  (c) => c.name === t.name\r\n                );\r\n                if (storedParams) {\r\n                  Object.assign(t.parameters, storedParams.parameters);\r\n                }\r\n                if (\r\n                  project.viewerConfig.project.structures[i] &&\r\n                  !(t.name in this.tools)\r\n                ) {\r\n                  //happens when tool changed in config\r\n                  t =\r\n                    project.viewerConfig.project.structures[i].tools[toolIndex];\r\n                }\r\n                if (t) {\r\n                  if (\r\n                    this.tools[t.name] &&\r\n                    this.tools[t.name].toolConfig.shared\r\n                  ) {\r\n                    Object.assign(\r\n                      window.sharedToolParameters[t.name],\r\n                      t.parameters\r\n                    );\r\n                    t.parameters = window.sharedToolParameters[t.name];\r\n                  }\r\n                  structure.tools[toolIndex] = t;\r\n                }\r\n              }\r\n\r\n              structures[i] = Object.assign(structures[i], structure);\r\n\r\n              if (this.checkIfErrorInProjectData(structures[i])) {\r\n                structures[i].hasChild = this.structureHasChild(\r\n                  structures[i].id\r\n                );\r\n                structures[i].isSubtype =\r\n                  structures[i].parentId > 0 ? true : false;\r\n                structures[i].subtypeLevel = this.findStructureSubtypeLevel(\r\n                  structures[i].parentId\r\n                );\r\n              }\r\n            }\r\n          }\r\n        }\r\n\r\n        // load annotation layers\r\n        for (let anno of file.annotations) {\r\n          let newRegionRois = createRoisFromAnno(anno);\r\n          roiLayers[file.id][anno.id].layer.regionRois = newRegionRois;\r\n          roiLayers[file.id][anno.id].tree.clear();\r\n          roiLayers[file.id][anno.id].tree.load(\r\n            newRegionRois.map((item) => item.treeItem)\r\n          );\r\n        }\r\n      }\r\n\r\n      this.selObjects.coordinates = project.projectData.selectedObjects;\r\n      this.graphData = project.projectData.selectedObjects\r\n        ? this.selObjects.coordinates.length\r\n        : 0;\r\n      this.setMountedState({ histogramConfig: histogramConfig });\r\n    }\r\n\r\n    if (this._isMounted) this.forceUpdate();\r\n\r\n    this.updateStructuresWithPersistentStorage(structures);\r\n\r\n    this.props.projectContext.setState({\r\n      roiLayers,\r\n      structures,\r\n      viewerConfig: project.viewerConfig,\r\n    });\r\n    this.setMountedState({\r\n      structures,\r\n    });\r\n  };\r\n\r\n  checkIfErrorInProjectData = (str) => {\r\n    if (!str.classificationSubtype && str.parentId === 0 && !str.hasChild) {\r\n      // if parent\r\n      return true;\r\n    } else if (str.classificationSubtype && str.subtypeLevel === 0) {\r\n      // if classification subtype error\r\n      return true;\r\n    } else if (\r\n      !str.classificationSubtype &&\r\n      str.parentId > 0 &&\r\n      !str.isSubtype\r\n    ) {\r\n      // if substructure error\r\n      return true;\r\n    } else {\r\n      return false;\r\n    }\r\n  };\r\n\r\n  //zoomToRoi - creates zoom object with given coordinates and\r\n  createZoomObjectForRect(gl, left, right, top, bottom) {\r\n    // set state that viewer/rendererdict[this.state.activeFileId] zooms to roi thath was clicked in gallery with mouse wheel\r\n\r\n    this.X1 = 0;\r\n    this.Y1 = 0;\r\n\r\n    let newZoomObjectDict = this.zoomObjectDict;\r\n    newZoomObjectDict[this.state.activeFileId] = {\r\n      zoomRoi: true,\r\n      zoomLeft: left,\r\n      zoomRight: right,\r\n      zoomTop: top,\r\n      zoomBottom: bottom,\r\n    };\r\n    this.setMountedState({\r\n      showGallery: gl,\r\n      showTilesGallery: gl,\r\n    });\r\n    this.zoomObjectDict = newZoomObjectDict;\r\n  }\r\n\r\n  setGalleryTool = () => {\r\n    this.setMountedState({ activeTool: Tools.NONE });\r\n  };\r\n\r\n  changeToSelectedFile = () => {\r\n    const { project } = this.state;\r\n\r\n    let selectedFileId = null;\r\n    // find id of file that is selected in gallery\r\n    project.files.forEach((f) => {\r\n      if (f.selectedInGallery === true) {\r\n        selectedFileId = f.id;\r\n      }\r\n    });\r\n\r\n    if (selectedFileId) {\r\n      this.onSelectFile(selectedFileId);\r\n    }\r\n  };\r\n\r\n  resetRoiZoom() {\r\n    this.zoomObject.zoomRoi = false;\r\n  }\r\n\r\n  resetRoiZoomInDict(fileId) {\r\n    let newZoomObjectDict = this.zoomObjectDict;\r\n    if (newZoomObjectDict) {\r\n      newZoomObjectDict[fileId].zoomRoi = false;\r\n      this.zoomObjectDict = newZoomObjectDict;\r\n      this.setMountedState({ refreshState: true });\r\n    }\r\n  }\r\n\r\n  setHistogramConfig(hConfig) {\r\n    this.setMountedState({ hC: hConfig });\r\n  }\r\n\r\n  generateToolParameterDict(parameters) {\r\n    if (\"paramLabels\" in parameters) return parameters;\r\n    //if (parameters.name) return parameters;\r\n    let paramDict = {};\r\n    let paramLabelDict = {};\r\n    for (let parameter of parameters) {\r\n      paramDict[parameter.name] = parameter.ui.default;\r\n      paramLabelDict[parameter.name] = parameter.ui.label;\r\n    }\r\n    paramDict[\"paramLabels\"] = paramLabelDict;\r\n    return paramDict;\r\n  }\r\n\r\n  processGeoJSONArray = (anno, frameArray) => {\r\n    const { selectedLayer, structures } = this.props.projectContext;\r\n    if (anno.geoJSONArray) {\r\n      let layerID = anno.id === -1 ? selectedLayer : structures[anno.id].id;\r\n      for (let item of anno.geoJSONArray) {\r\n        const frame = item.i;\r\n        if (item.geoJSON == null) continue;\r\n        let newRegionRoisObject = item.geoJSON.coordinates.map(\r\n          (c) => new RegionROI({ regions: c })\r\n        );\r\n        let layerObject = {\r\n          id: layerID,\r\n          isKeyFrame: true,\r\n          layer: {\r\n            regionRois: newRegionRoisObject,\r\n            inverted: false,\r\n          },\r\n          tree: new RBush(),\r\n        };\r\n        layerObject.tree.load(newRegionRoisObject.map((item) => item.treeItem));\r\n\r\n        if (frame in frameArray) {\r\n          const tIdx = frameArray[frame].findIndex(\r\n            (item) => item && item.id === layerID\r\n          );\r\n          if (tIdx >= 0) {\r\n            frameArray[frame][tIdx] = layerObject;\r\n          } else {\r\n            frameArray[frame].push(layerObject);\r\n          }\r\n        } else {\r\n          frameArray[frame] = [layerObject];\r\n        }\r\n        if (frame === this.state.t || frame === this.state.z) {\r\n          anno.geoJSON = item.geoJSON;\r\n        }\r\n      }\r\n    }\r\n  };\r\n\r\n  updateProject = (project, fileId = this.props.projectContext.fileId) => {\r\n    const { roiLayers, selectedLayer } = this.props.projectContext;\r\n    let frameArray = this.state.frameArrayDict[this.state.activeFileId];\r\n\r\n    // load annotation layers\r\n    for (let anno of project.files.find((c) => c.id === fileId).annotations) {\r\n      this.processGeoJSONArray(anno, frameArray);\r\n      if (anno.geoJSON === null) continue;\r\n      let newRegionRois = createRoisFromAnno(anno);\r\n      let idx = 0;\r\n      if (anno.id === -1) {\r\n        idx = selectedLayer;\r\n      }\r\n      roiLayers[fileId][idx].layer.regionRois = newRegionRois;\r\n      roiLayers[fileId][idx].tree.load(\r\n        newRegionRois.map((item) => item.treeItem)\r\n      );\r\n    }\r\n    this.props.projectContext.setState({ roiLayers: roiLayers });\r\n  };\r\n\r\n  updateFileClasses = (projectWithClasses) => {\r\n    const { project } = this.props.projectContext;\r\n    projectWithClasses.files.forEach((file, fileIndex) => {\r\n      project.files[fileIndex].classId = file.classId;\r\n    });\r\n  };\r\n\r\n  setMountedState = (stateObject, callback) => {\r\n    if (this._isMounted) {\r\n      this.setState(stateObject, callback);\r\n    }\r\n  };\r\n\r\n  componentDidMount() {\r\n    this._isMounted = true;\r\n    window.addEventListener(\"resize\", () => this.updateDimensions());\r\n    window.addEventListener(\"keydown\", this.keyDown);\r\n\r\n    let ids = this.props.persistentStorage.load(\"SplitscreenFileIds\");\r\n    if (ids) {\r\n      this.setMountedState({ splitscreenFileIds: ids });\r\n    }\r\n\r\n    let activeId = this.props.persistentStorage.load(\"ActiveFileId\");\r\n    if (activeId) {\r\n      this.setMountedState({ activeFileId: activeId });\r\n    }\r\n\r\n    let chainList = this.props.persistentStorage.load(\"chainList\");\r\n    if (chainList) this.chainList = chainList;\r\n    let chainListFileIds =\r\n      this.props.persistentStorage.load(\"chainListFileIds\");\r\n    if (chainListFileIds) this.chainListFileIds = chainListFileIds;\r\n\r\n    if (ids) {\r\n      let newZoomObjectDict = this.zoomObjectDict;\r\n      for (const fileId of Object.values(ids)) {\r\n        newZoomObjectDict[fileId] = this.getLocalZoomObject(fileId);\r\n      }\r\n      this.zoomObjectDict = newZoomObjectDict;\r\n    }\r\n\r\n    this.props.spinloader.setRightWidth(\r\n      this.state.sideBarWidth +\r\n        this.state.verticalToolBarWidth +\r\n        this.state.classRoomChatWidth\r\n    );\r\n    this.props.projectContext.setPersistentStorage(\r\n      this.props.persistentStorage\r\n    );\r\n  }\r\n\r\n  componentWillUnmount() {\r\n    this._isMounted = false;\r\n    window.removeEventListener(\"resize\", () => this.updateDimensions());\r\n    window.removeEventListener(\"keydown\", this.keyDown);\r\n    window.setNavigationbarTitle(undefined);\r\n    this.props.spinloader.hide();\r\n    Backend.closeProject(\r\n      this.props.id,\r\n      () => {},\r\n      (err) =>\r\n        console.warn(`Could not perform all closing actions: \\n\\n ${err}`)\r\n    );\r\n  }\r\n\r\n  getLocalZoomObject = (fileId) => {\r\n    const zoom = this.props.persistentStorage.load(\"zoomObject\" + fileId);\r\n    let zoomObject = {};\r\n    if (zoom) {\r\n      zoom.zoomRoi = true;\r\n    }\r\n    if (zoom) {\r\n      zoomObject = JSON.parse(JSON.stringify(zoom));\r\n    } else {\r\n      zoomObject = {\r\n        zoomRoi: false,\r\n        zoomLeft: 0,\r\n        zoomRight: 0,\r\n        zoomTop: 0,\r\n        zoomBottom: 0,\r\n      };\r\n    }\r\n    return zoomObject;\r\n  };\r\n\r\n  toggleRois = () => {\r\n    const { structures } = this.state.project.viewerConfig.project;\r\n    if (this.countVisibleStructures() > 0) {\r\n      for (let roiLayer of structures) {\r\n        roiLayer.visible = false;\r\n      }\r\n    } else {\r\n      for (let roiLayer of structures) {\r\n        roiLayer.visible = true;\r\n      }\r\n    }\r\n    this.forceUpdate();\r\n  };\r\n\r\n  /**\r\n   * handle shortcuts\r\n   * @param {ActionEvent} e Event when keyboard button is pressed\r\n   */\r\n  keyDown = (e) => {\r\n    let elem = null;\r\n    if (\r\n      this.rendererdict[this.state.activeFileId] &&\r\n      this.rendererdict[this.state.activeFileId].keyDown\r\n    )\r\n      this.rendererdict[this.state.activeFileId].keyDown(e);\r\n    if (\r\n      document.activeElement.localName !== \"input\" &&\r\n      document.activeElement.localName !== \"textarea\"\r\n    ) {\r\n      if (e.key === \"Insert\") {\r\n        // [shift] + [Numpad 0]\r\n        elem = document.getElementById(\"toolZoomFitBtn\");\r\n      } else if (e.key === \"End\") {\r\n        // [shift] + [Numpad 1]\r\n        elem = document.getElementById(\"toolZoomOriginalBtn\");\r\n      } else if (e.shiftKey) {\r\n        switch (e.key) {\r\n          case \"*\":\r\n          case \"+\": // [shift] + [+]\r\n            elem = document.getElementById(\"toolZoomInBtn\");\r\n            break;\r\n          case \"_\":\r\n          case \"-\": // [shift] + [-]\r\n            elem = document.getElementById(\"toolZoomOutBtn\");\r\n            break;\r\n          case \"=\": // [shift] + [0]\r\n            elem = document.getElementById(\"toolZoomFitBtn\");\r\n            break;\r\n          case \"!\": // [shift] + [1]\r\n            elem = document.getElementById(\"toolZoomOriginalBtn\");\r\n            break;\r\n          case \"R\": // [shift] + [r]\r\n            this.toggleRois();\r\n            break;\r\n          default:\r\n            break;\r\n        }\r\n      } else if (e.altKey) {\r\n        for (let i = 1; i < 10; i++) {\r\n          if (e.key === i.toString()) {\r\n            elem = document.getElementById(\"channel_\" + (i - 1).toString());\r\n            break;\r\n          }\r\n        }\r\n      }\r\n      if (e.ctrlKey) {\r\n        switch (e.key) {\r\n          case \"ArrowRight\":\r\n            this.openNextFile();\r\n            break;\r\n          case \"ArrowLeft\":\r\n            this.openPrevFile();\r\n            break;\r\n          case \"s\": // [ctrl] + [s]\r\n            if (this.props.projectContext.groupPermissions.canAnnotate) {\r\n              this.onSaveClick();\r\n            }\r\n            e.preventDefault();\r\n            break;\r\n          case \"1\": // [ctrl] + [1]\r\n            elem = document.getElementById(\"toolPenBtn\");\r\n            break;\r\n          case \"2\": // [ctrl] + [2]\r\n            elem = document.getElementById(\"toolRegionBtn\");\r\n            break;\r\n          case \"3\": // [ctrl] + [3]\r\n            elem = document.getElementById(\"toolSelectBtn\");\r\n            break;\r\n          case \"4\": // [ctrl] + [4]\r\n            elem = document.getElementById(\"toolCopyBtn\");\r\n            break;\r\n          case \"g\": // [ctrl] + [g]\r\n            this.setMountedState({\r\n              showTilesGallery: this.state.showTilesGallery ? false : true,\r\n            });\r\n            this.toggleSideBar();\r\n            this.setGalleryTool();\r\n            this.gallery.setPageSelectedRoi(this.state.selRoi);\r\n            e.preventDefault();\r\n            break;\r\n          case \"5\": // [ctrl] + [5]\r\n            elem = document.getElementById(\"toolFillBtn\");\r\n            break;\r\n          case \"p\": //[ctrl] + [p]\r\n            elem = document.getElementById(\"toolPrintBtn\");\r\n            break;\r\n\r\n          case \"z\": //[ctrl] + [z]\r\n            if (!this.state.showGallery && !this.state.showTilesGallery) {\r\n              this.props.projectHistory.undo();\r\n            }\r\n            e.preventDefault();\r\n            break;\r\n          case \"y\": //[ctrl] + [y]\r\n            if (!this.state.showGallery && !this.state.showTilesGallery) {\r\n              this.props.projectHistory.redo();\r\n            }\r\n            e.preventDefault();\r\n            break;\r\n          default:\r\n            break;\r\n        }\r\n      } else {\r\n        switch (e.key) {\r\n          case \" \": // space\r\n            if (this.state.showTilesGallery) {\r\n              this.gallery.handleChangeCrosshair(null, true);\r\n            }\r\n            e.preventDefault();\r\n            break;\r\n          case \"Delete\":\r\n            if (\r\n              typeof this.state.showTilesGallery === \"undefined\" &&\r\n              this.state.showGallery\r\n            ) {\r\n              this.gallery.deleteSelectedRoi();\r\n            }\r\n            e.preventDefault();\r\n            break;\r\n          case \"ArrowUp\":\r\n            if (this.state.showTilesGallery) {\r\n              this.gallery.handleChangePage(null, \"up\");\r\n            } else if (\r\n              typeof this.state.showTilesGallery === \"undefined\" ||\r\n              this.state.showTilesGallery === false\r\n            ) {\r\n              if (this.state.activeTool === \"selection\") {\r\n                // select roi next to selected roi\r\n                this.rendererdict[this.state.activeFileId].keyDownSelection(e);\r\n              } else if (this.state.activeTool !== \"rectangle\") {\r\n                // translate by the offset to the destination point if not in result tab\r\n                if (!this.props.resultTab.getZoomLevelFixed()) {\r\n                  this.rendererdict[this.state.activeFileId].ctx.translate(\r\n                    0,\r\n                    50\r\n                  );\r\n                }\r\n              }\r\n            }\r\n            e.preventDefault();\r\n            break;\r\n          case \"ArrowDown\":\r\n            if (this.state.showTilesGallery) {\r\n              this.gallery.handleChangePage(null, \"down\");\r\n            } else if (\r\n              typeof this.state.showTilesGallery === \"undefined\" ||\r\n              this.state.showTilesGallery === false\r\n            ) {\r\n              if (this.state.activeTool === \"selection\") {\r\n                // select roi next to selected roi\r\n                this.rendererdict[this.state.activeFileId].keyDownSelection(e);\r\n              } else if (this.state.activeTool !== \"rectangle\") {\r\n                // translate by the offset to the destination point if not in result tab\r\n                if (!this.props.resultTab.getZoomLevelFixed()) {\r\n                  this.rendererdict[this.state.activeFileId].ctx.translate(\r\n                    0,\r\n                    -50\r\n                  );\r\n                }\r\n              }\r\n            }\r\n            e.preventDefault();\r\n            break;\r\n          case \"ArrowLeft\":\r\n            if (\r\n              typeof this.state.showTilesGallery === \"undefined\" ||\r\n              this.state.showTilesGallery === false\r\n            ) {\r\n              if (this.state.showGallery) {\r\n                this.gallery.selectNewImage(\"left\");\r\n              } else {\r\n                if (this.state.activeTool === \"selection\") {\r\n                  // select roi next to selected roi\r\n                  this.rendererdict[this.state.activeFileId].keyDownSelection(\r\n                    e\r\n                  );\r\n                } else if (this.state.activeTool !== \"rectangle\") {\r\n                  // translate by the offset to the destination point if not in result tab\r\n                  if (!this.props.resultTab.getZoomLevelFixed()) {\r\n                    this.rendererdict[this.state.activeFileId].ctx.translate(\r\n                      50,\r\n                      0\r\n                    );\r\n                  }\r\n                }\r\n              }\r\n            }\r\n            e.preventDefault();\r\n            break;\r\n          case \"ArrowRight\":\r\n            if (\r\n              typeof this.state.showTilesGallery === \"undefined\" ||\r\n              this.state.showTilesGallery === false\r\n            ) {\r\n              if (this.state.showGallery) {\r\n                this.gallery.selectNewImage(\"right\");\r\n              } else {\r\n                if (this.state.activeTool === \"selection\") {\r\n                  // select roi next to selected roi\r\n                  this.rendererdict[this.state.activeFileId].keyDownSelection(\r\n                    e\r\n                  );\r\n                } else if (this.state.activeTool !== \"rectangle\") {\r\n                  // translate by the offset to the destination point if not in result tab\r\n                  if (!this.props.resultTab.getZoomLevelFixed()) {\r\n                    this.rendererdict[this.state.activeFileId].ctx.translate(\r\n                      -50,\r\n                      0\r\n                    );\r\n                  }\r\n                }\r\n              }\r\n            }\r\n            e.preventDefault();\r\n            break;\r\n          case \"0\":\r\n          case \"1\":\r\n          case \"2\":\r\n          case \"3\":\r\n          case \"4\":\r\n          case \"5\":\r\n          case \"6\":\r\n          case \"7\":\r\n          case \"8\":\r\n          case \"9\":\r\n            {\r\n              let pressedNumber = parseInt(e.key);\r\n              if (this.state.showTilesGallery) {\r\n                this.gallery.classifyTilesGalleryWithKey(pressedNumber);\r\n              } else if (this.state.showGallery) {\r\n                this.gallery.classifyImageWithKey(pressedNumber);\r\n              } else {\r\n                if (this.state.activeTool === \"selection\") {\r\n                  this.rendererdict[\r\n                    this.state.activeFileId\r\n                  ].classifySelectedRoi(pressedNumber);\r\n                } else if (\r\n                  this.resultTabActive() &&\r\n                  this.state.project.type.includes(\"HistoClassification\")\r\n                ) {\r\n                  window.addFrequencyClass(pressedNumber);\r\n                } else if (\r\n                  this.resultTabActive() &&\r\n                  this.state.project.type.includes(\"HistoPointCounting\")\r\n                ) {\r\n                  window.classifyTileWithkey(pressedNumber);\r\n                }\r\n              }\r\n              e.preventDefault();\r\n            }\r\n            break;\r\n          case \"+\":\r\n            this.rendererdict[this.state.activeFileId].onScaleOnly({\r\n              wheelDelta: 120,\r\n            });\r\n            e.preventDefault();\r\n            break;\r\n          case \"-\":\r\n            this.rendererdict[this.state.activeFileId].onScaleOnly({\r\n              wheelDelta: -120,\r\n            });\r\n            e.preventDefault();\r\n            break;\r\n          case \"r\":\r\n            document.getElementById(\"roiTabBtn\").click();\r\n            e.preventDefault();\r\n            break;\r\n          case \"v\":\r\n            document.getElementById(\"viewTabBtn\").click();\r\n            e.preventDefault();\r\n            break;\r\n          default:\r\n            break;\r\n        }\r\n        if (\r\n          typeof this.tools[this.state.activeTool] !== \"undefined\" &&\r\n          this.tools[this.state.activeTool].onKeyDown\r\n        )\r\n          this.tools[this.state.activeTool].onKeyDown(\r\n            e,\r\n            false,\r\n            this.checkToolInConfig(\"TilesTool\")\r\n          );\r\n      }\r\n    }\r\n    if (elem !== null) {\r\n      elem.click();\r\n      e.preventDefault();\r\n    }\r\n    if (\r\n      this.rendererdict[this.state.activeFileId] &&\r\n      this.rendererdict[this.state.activeFileId].showResultTable\r\n    ) {\r\n      window.updateResultTable();\r\n    }\r\n  };\r\n\r\n  setSelectedRoi = (roi) => {\r\n    this.setMountedState({ selRoi: roi.r });\r\n  };\r\n\r\n  updateDimensions() {\r\n    let savedT = 0;\r\n    if (\r\n      this.rendererdict[this.state.activeFileId] &&\r\n      this.rendererdict[this.state.activeFileId].state\r\n    ) {\r\n      savedT = this.rendererdict[this.state.activeFileId].state.t;\r\n    }\r\n    // reset all child components\r\n    this.setMountedState({\r\n      dimensionsUpdated: true,\r\n      containerKey: new Date().getTime(),\r\n    });\r\n    if (this.rendererdict[this.state.activeFileId] && savedT > 0) {\r\n      this.rendererdict[this.state.activeFileId].updateT(savedT);\r\n    }\r\n    let zoom;\r\n    let newZoomObjectDict;\r\n    for (const value of Object.values(this.state.splitscreenFileIds)) {\r\n      zoom = this.props.persistentStorage.load(\"zoomObject\" + value);\r\n      //if (zoom) zoom.zoomRoi = true;\r\n      newZoomObjectDict = this.zoomObjectDict;\r\n      if (zoom) {\r\n        newZoomObjectDict[value] = JSON.parse(JSON.stringify(zoom));\r\n      } else {\r\n        newZoomObjectDict[value] = {\r\n          zoomRoi: false,\r\n          zoomLeft: 0,\r\n          zoomRight: 0,\r\n          zoomTop: 0,\r\n          zoomBottom: 0,\r\n        };\r\n      }\r\n      this.zoomObjectDict = newZoomObjectDict;\r\n    }\r\n  }\r\n\r\n  getArrayDepth = (depthArray) => {\r\n    let depth = 0;\r\n    let child = depthArray[0];\r\n    while (typeof child !== \"undefined\") {\r\n      depth++;\r\n      child = child[0];\r\n    }\r\n    return depth;\r\n  };\r\n\r\n  /**\r\n   * Check if polygon corresponds to the given treeItem\r\n   * @param {*} polygon Polygon that should be compared\r\n   * @param {*} treeItem treeItem that should be compared\r\n   * @returns True/False\r\n   */\r\n  isCorrespondingPolygon = (polygon, treeItem) => {\r\n    for (let contour of polygon) {\r\n      // check if contour has one common point with treeItem\r\n      if (\r\n        contour.find(\r\n          (point) =>\r\n            point[0] === treeItem.regions[0][0] &&\r\n            point[1] === treeItem.regions[0][1]\r\n        )\r\n      ) {\r\n        // check if contour has second common point with treeItem\r\n        if (\r\n          contour.find(\r\n            (point) =>\r\n              point[0] === treeItem.regions[1][0] &&\r\n              point[1] === treeItem.regions[1][1]\r\n          )\r\n        ) {\r\n          // assume to be same object and discard other polygons\r\n          return true;\r\n        }\r\n      }\r\n    }\r\n    return false;\r\n  };\r\n\r\n  createNewRois = (frameGeoJson) => {\r\n    if (\r\n      this.getArrayDepth(frameGeoJson.coordinates) === 5 &&\r\n      frameGeoJson.coordinates.length === 1\r\n    )\r\n      frameGeoJson.coordinates = frameGeoJson.coordinates[0];\r\n\r\n    //let newRois = [];\r\n    let tree = new RBush();\r\n    let newRois = createRoisFromAnno({ geoJSON: frameGeoJson });\r\n    tree.load(newRois.map((item) => item.treeItem)); //load tree to new data\r\n    return [newRois, tree];\r\n  };\r\n\r\n  loadAnnotations(file, id, projectId, newroiLayers, callback) {\r\n    this.props.spinloader.show();\r\n    const fileData = {\r\n      id: projectId,\r\n      fileId: file.id,\r\n    };\r\n    const queryOptions = {\r\n      minX: -1,\r\n      minY: -1,\r\n      maxX: -1,\r\n      maxY: -1,\r\n      maxResults: 2000,\r\n    };\r\n    const zoomObject = this.getLocalZoomObject(file.id);\r\n    if (zoomObject && zoomObject.zoomRoi) {\r\n      queryOptions.minX = parseInt(zoomObject.zoomLeft, 10);\r\n      queryOptions.minY = parseInt(zoomObject.zoomTop, 10);\r\n      queryOptions.maxX = parseInt(zoomObject.zoomRight, 10);\r\n      queryOptions.maxY = parseInt(zoomObject.zoomBottom, 10);\r\n    }\r\n    Backend.loadAnnotations(fileData, queryOptions)\r\n      .then((jsonAnnotations) => {\r\n        this.processLoadedAnnotations(\r\n          jsonAnnotations,\r\n          file,\r\n          id,\r\n          projectId,\r\n          newroiLayers,\r\n          callback\r\n        );\r\n        if (jsonAnnotations.is_reduced === true) {\r\n          window.showWarningSnackbar(\r\n            \"Too many annotations to render, only sample annotations from middle are loaded!\"\r\n          );\r\n        }\r\n      })\r\n      .catch((err) => {\r\n        console.error(err);\r\n        window.openErrorDialog(\"Could not load annotations:\\n\" + err);\r\n        this.props.spinloader.hide();\r\n      });\r\n  }\r\n\r\n  updateVisibleROIDebounced = debounce(\r\n    (...args) => this.updateVisibleROI(...args),\r\n    100\r\n  );\r\n\r\n  processLoadedAnnotations = (\r\n    jsonAnnotations,\r\n    file,\r\n    id,\r\n    projectId,\r\n    newroiLayers,\r\n    callback\r\n  ) => {\r\n    const { structures } = this.props.projectContext;\r\n    if (jsonAnnotations.is_locked) {\r\n      // call Backend.loadAnnotations(...) again after 5 seconds until jsonAnnotations.is_locked does not exist anymore\r\n      setTimeout(() => {\r\n        this.loadAnnotations(file, id, projectId, newroiLayers, callback);\r\n      }, 5000);\r\n      return;\r\n    }\r\n    this.props.projectContext.setState({\r\n      annotationsReduced: jsonAnnotations.is_reduced,\r\n      totalRoiCount: jsonAnnotations.total_roi_count,\r\n    });\r\n    let result = jsonAnnotations.data;\r\n    this.setMountedState({\r\n      annotationsAreReduced: jsonAnnotations.is_reduced,\r\n    });\r\n\r\n    if (!callback) {\r\n      file.annotations = result;\r\n    }\r\n\r\n    // part of video annotation. Start\r\n\r\n    let keys = [];\r\n    let emptyIdxs = [0];\r\n    for (let i = 1; i < result.length; i++) {\r\n      let idframeArray =\r\n        result[i].geoJSON.idframeArray || result[i].geoJSON.idTimeArray;\r\n      if (\r\n        typeof idframeArray === \"undefined\" ||\r\n        Object.keys(idframeArray).length === 0\r\n      ) {\r\n        emptyIdxs.push(i);\r\n        continue;\r\n      }\r\n\r\n      keys.push(\r\n        ...Object.keys(\r\n          result[i].geoJSON.idframeArray || result[i].geoJSON.idTimeArray\r\n        )\r\n      );\r\n    }\r\n    keys = [...new Set(keys)];\r\n    function objectframeArray(keys) {\r\n      return keys.reduce(function (result, key) {\r\n        result[key] = [];\r\n        return result;\r\n      }, {});\r\n    }\r\n    let loadedframeArray = objectframeArray(keys, function (value) {\r\n      return value;\r\n    });\r\n    Object.keys(loadedframeArray).forEach((key) => {\r\n      for (let i = 1; i < result.length; i++) {\r\n        let anno = result[i];\r\n        let frameGeoJson =\r\n          anno.geoJSON.idframeArray && anno.geoJSON.idframeArray[key]\r\n            ? anno.geoJSON.idframeArray[key]\r\n            : anno.geoJSON; //take default annotations, if no frame found\r\n\r\n        if (!frameGeoJson) {\r\n          continue;\r\n        }\r\n        const [newRois, tree] = this.createNewRois(frameGeoJson);\r\n        let structROIs = {\r\n          id: anno.geoJSON.structID ? anno.geoJSON.structID : structures[i].id,\r\n          layer: {\r\n            inverted: false,\r\n            regionRois: newRois,\r\n          },\r\n          tree: tree,\r\n        };\r\n        if (frameGeoJson.isKeyFrame && frameGeoJson.isKeyFrame === true) {\r\n          structROIs.isKeyFrame = true;\r\n        }\r\n        loadedframeArray[key].push(structROIs);\r\n      }\r\n    });\r\n\r\n    // add annotations from job\r\n    for (let i = 0; i < result.length; i++) {\r\n      this.processGeoJSONArray(result[i], loadedframeArray);\r\n    }\r\n\r\n    let frameArrayDict = this.state.frameArrayDict;\r\n    frameArrayDict[this.state.activeFileId] = loadedframeArray;\r\n\r\n    this.setMountedState({\r\n      frameArrayDict: frameArrayDict,\r\n      loadedAnnotationsCounter: this.state.loadedAnnotationsCounter + 1,\r\n    });\r\n\r\n    // part of video annotation. End\r\n\r\n    // part of frame annotation. Start\r\n    // for (let i of emptyIdxs) {\r\n    for (let i = 0; i < result.length; i++) {\r\n      if (i >= result.length) break;\r\n      let anno = result[i];\r\n      // ensuring that old files also work\r\n      const newRois = this.createNewRois(anno.geoJSON)[0];\r\n      let idx = 0;\r\n      if (this.newLayerIndices.length !== 0) {\r\n        idx = this.newLayerIndices[i];\r\n      } else {\r\n        idx = anno.id;\r\n      }\r\n\r\n      if (newroiLayers[file.id][idx]) {\r\n        // create an Id if not set\r\n        if (!newroiLayers[file.id][idx].id)\r\n          newroiLayers[file.id][idx].id = idx + 1;\r\n\r\n        newroiLayers[file.id][idx].layer.regionRois = newRois;\r\n        newroiLayers[file.id][idx].tree = new RBush();\r\n        newroiLayers[file.id][idx].tree.load(\r\n          newRois.map((item) => item.treeItem)\r\n        ); //load tree to new data\r\n      }\r\n    }\r\n\r\n    // part of frame annotation. End\r\n    this.props.spinloader.hide();\r\n    if (!this.state.annotatedFileIds.includes(file.id)) {\r\n      this.setMountedState((prevState) => ({\r\n        annotatedFileIds: [...prevState.annotatedFileIds, file.id],\r\n      }));\r\n    }\r\n    if (typeof callback === \"function\") {\r\n      callback();\r\n    }\r\n  };\r\n\r\n  updateVisibleROI = (p1, p2) => {\r\n    if (!this.state.annotationsAreReduced) return;\r\n    const { roiLayers, fileId, structures } = this.props.projectContext;\r\n    const structuresMap = {};\r\n    for (let i = 0; i < structures.length; i++) {\r\n      structuresMap[structures[i].id] = i;\r\n    }\r\n    structuresMap[1] = 0;\r\n    let currentFile = this.props.projectContext.project.files.find(\r\n      (file) => file.id === fileId\r\n    );\r\n    if (!this.props.projectContext.isLoadingAnnotations) {\r\n      this.props.projectContext.setState({ isLoadingAnnotations: true });\r\n\r\n      const fileData = {\r\n        id: this.state.project.id,\r\n        fileId: currentFile.id,\r\n      };\r\n\r\n      const queryOptions = {\r\n        minX: parseInt(p1.x, 10),\r\n        minY: parseInt(p1.y, 10),\r\n        maxX: parseInt(p2.x, 10),\r\n        maxY: parseInt(p2.y, 10),\r\n        maxResults: 2000,\r\n      };\r\n\r\n      Backend.loadAnnotations(fileData, queryOptions)\r\n        .then((jsonAnnotations) => {\r\n          this.processLoadedAnnotations(\r\n            jsonAnnotations,\r\n            currentFile,\r\n            fileId,\r\n            this.state.project.id,\r\n            roiLayers\r\n          );\r\n          this.props.spinloader.hide();\r\n          this.props.projectContext.setState({ isLoadingAnnotations: false });\r\n          const lp1 = this.lastViewRoiParams.p1;\r\n          const lp2 = this.lastViewRoiParams.p2;\r\n          if (p1.x !== lp1.x || p1.y !== lp1.y) {\r\n            this.updateVisibleROIDebounced(lp1, lp2);\r\n          }\r\n        })\r\n        .catch((err) => {\r\n          console.error(err);\r\n          window.openErrorDialog(\r\n            `Could not load annotations of file ${currentFile.label}:\\n${err}`\r\n          );\r\n          this.props.spinloader.hide();\r\n          this.props.projectContext.setState({ isLoadingAnnotations: false });\r\n        });\r\n    }\r\n    this.lastViewRoiParams = { p1, p2 };\r\n  };\r\n\r\n  devtoolsOpen() {\r\n    const threshold = 160;\r\n    const widthThreshold = window.outerWidth - window.innerWidth > threshold;\r\n    const heightThreshold = window.outerHeight - window.innerHeight > threshold;\r\n    //const orientation = widthThreshold ? \"vertical\" : \"horizontal\";\r\n\r\n    if (\r\n      !(heightThreshold && widthThreshold) &&\r\n      ((window.Firebug &&\r\n        window.Firebug.chrome &&\r\n        window.Firebug.chrome.isInitialized) ||\r\n        widthThreshold ||\r\n        heightThreshold)\r\n    ) {\r\n      return true;\r\n    } else {\r\n      return false;\r\n    }\r\n  }\r\n\r\n  openNextFile = () => {\r\n    const { fileId, project } = this.props.projectContext;\r\n    const files = project.files;\r\n    const fileIdx = files.findIndex((file) => file.id === fileId);\r\n    if (fileIdx >= 0 && files.length > fileIdx + 1) {\r\n      this.onSelectFile(files[fileIdx + 1].id);\r\n    }\r\n  };\r\n\r\n  openPrevFile = () => {\r\n    const { fileId, project } = this.props.projectContext;\r\n    const files = project.files;\r\n    const fileIdx = files.findIndex((file) => file.id === fileId);\r\n    if (fileIdx > 0) {\r\n      this.onSelectFile(files[fileIdx - 1].id);\r\n    }\r\n  };\r\n\r\n  /**\r\n   * Load the file with the given id, include its OME metadata, and set it as the active file.\r\n   * @param {Uuid} id The id of the file to open.\r\n   * @param {Uuid} projectId The id of the project the file belongs to.\r\n   * @param {Boolean} fileChange ???\r\n   * @returns\r\n   */\r\n  openFile(id, projectId, fileChange = false) {\r\n    if (this.lastFileId === id) return; //prevent loading File twice\r\n    this.lastFileId = id;\r\n    const { roiLayers, structures } = this.props.projectContext;\r\n    // create empty roilayers for dynamic structures\r\n    if (roiLayers[id]) {\r\n      for (let structure of structures) {\r\n        const roiLayer = roiLayers[id].find((c) => c.id === structure.id);\r\n        if (!roiLayer) {\r\n          roiLayers[id].push({\r\n            id: structure.id,\r\n            layer: {\r\n              regionRois: [],\r\n              inverted: false,\r\n            },\r\n            tree: new RBush(),\r\n          });\r\n        }\r\n      }\r\n      this.props.projectContext.setState({ roiLayers });\r\n    }\r\n\r\n    // load image meta data\r\n    Backend.loadImage(\r\n      {\r\n        id: id,\r\n      },\r\n      (ome) => {\r\n        if (ome.fileName) {\r\n          let newOme = { ...this.state.omeDict };\r\n          newOme[id] = ome;\r\n          this.props.persistentStorage.save(\"opened_file_id\", id);\r\n          let newStateObject = {\r\n            omeDict: newOme,\r\n            fileId: id,\r\n            showTimeBar: ome.sizeT > 1,\r\n            showZStackBar: ome.sizeZ > 1,\r\n            displayTimeBar: ome.sizeT > 1,\r\n            displayZStackBar: ome.sizeZ > 1,\r\n            histogramConfig: this.state.histogramConfig,\r\n            ome,\r\n            importProgress: -1,\r\n          };\r\n          if (\r\n            !fileChange &&\r\n            !this.props.persistentStorage.load(\"SplitscreenFileIds\")\r\n          ) {\r\n            newStateObject.splitscreenFileIds = [id];\r\n          }\r\n\r\n          if (!fileChange) newStateObject.containerKey = new Date().getTime();\r\n\r\n          if (!newStateObject.histogramConfig[id]) {\r\n            // write loaded data in to component state\r\n            newStateObject.histogramConfig[id] = new ChannelsConfig(\r\n              ome.channels.map((c, i) => {\r\n                //set general name, if none in metadata\r\n                if (c.name === null) {\r\n                  c.name = \"Ch \" + i;\r\n                }\r\n                return c;\r\n              })\r\n            );\r\n          }\r\n          Object.assign(this.state, newStateObject);\r\n          this.props.projectContext.setState(newStateObject, () => {\r\n            let newProjectObject = this.state.project;\r\n            if (newProjectObject.projectData !== null) {\r\n              let currentFile = newProjectObject.files.find(\r\n                (file) => file.id === id\r\n              );\r\n              if (currentFile) {\r\n                this.loadAnnotations(\r\n                  currentFile,\r\n                  id,\r\n                  projectId,\r\n                  roiLayers,\r\n                  () => {\r\n                    this.setMountedState({ project: newProjectObject });\r\n                    this.props.projectContext.setState({\r\n                      project: newProjectObject,\r\n                      roiLayers,\r\n                    });\r\n                    this.props.projectHistory.init(this);\r\n                  }\r\n                );\r\n              }\r\n            }\r\n          });\r\n        } else if (ome.importNeeded) {\r\n          this.setMountedState({ importProgress: 0 });\r\n          const socket = Backend.getSocket();\r\n          socket.on(\"import_progress\", (progress) => {\r\n            if (progress !== \"CLOSE\") {\r\n              this.setMountedState({ importProgress: parseInt(progress, 10) });\r\n            } else {\r\n              this.setMountedState({ importProgress: -1 });\r\n              socket.close(); // close socket\r\n              // reload page\r\n              window.location.reload();\r\n            }\r\n            // log when socket is closed\r\n            socket.onclose = () => {\r\n              console.log(\"Socket for import closed.\");\r\n            };\r\n          });\r\n        } else {\r\n          let failedFilePath = this.state.project.files.find(\r\n            (file) => file.id === id\r\n          ).sourcePath;\r\n          window.openErrorDialog(\r\n            \"Error: Most likely the original file could not be found:\\n\" +\r\n              failedFilePath\r\n          );\r\n        }\r\n\r\n        // if histo classification project draw grid for next file\r\n        if (\r\n          this.state.project.type.includes(\"HistoClassification\") &&\r\n          this.state.gridSize &&\r\n          this.rendererdict[this.state.activeFileId]\r\n        ) {\r\n          setTimeout(() => {\r\n            this.onChangeTool(\"gridtool\");\r\n            this.tools[\"gridtool\"].createGrid(this.state.gridSize, false, true);\r\n          }, 400);\r\n          setTimeout(\r\n            () => this.rendererdict[this.state.activeFileId].centerRoi(),\r\n            600\r\n          );\r\n        }\r\n\r\n        // if point counting project draw grid for next file\r\n        if (\r\n          this.state.project.type.includes(\"HistoPointCounting\") &&\r\n          this.state.gridSize &&\r\n          this.rendererdict[this.state.activeFileId]\r\n        ) {\r\n          setTimeout(() => {\r\n            this.onChangeTool(\"gridtool\");\r\n            this.tools[\"gridtool\"].createGrid(this.state.gridSize, true, true);\r\n          }, 400);\r\n          setTimeout(\r\n            () => this.rendererdict[this.state.activeFileId].centerRoi(),\r\n            600\r\n          );\r\n        }\r\n\r\n        if (!fileChange) {\r\n          // set default selected layer\r\n          this.setSelLayerConfig();\r\n        }\r\n\r\n        // if e.g. Tobacco Analysis and no Base-Roi set, set whole Scene as Base-Roi\r\n        if (this.checkPropertyInConfig(\"AutomaticBaseRoiWholeImage\")) {\r\n          let idx = 0;\r\n          if (this.props.projectContext.selectedLayer != null) {\r\n            idx = this.props.projectContext.selectedLayer;\r\n          }\r\n          setTimeout(() => {\r\n            this.setSelectedLayer(0);\r\n            this.onChangeTool(\"gridtool\");\r\n            this.tools[\"gridtool\"].createGrid(1, true, false);\r\n            this.onChangeTool(\"none\");\r\n            this.setSelectedLayer(idx);\r\n          }, 1000);\r\n        }\r\n\r\n        // set full image as structure\r\n        let automaticFullImageRoiLayer =\r\n          this.state.viewerConfig.project.projectStringProperties[\r\n            \"AutomaticFullImageRoiLayer\"\r\n          ];\r\n        if (automaticFullImageRoiLayer) {\r\n          this.setMountedState({\r\n            opacity: 0,\r\n          });\r\n          let idx = 0;\r\n          if (this.props.projectContext.selectedLayer != null) {\r\n            idx = this.props.projectContext.selectedLayer;\r\n          }\r\n          setTimeout(() => {\r\n            this.setSelectedLayer(parseInt(automaticFullImageRoiLayer, 10));\r\n            let gridExists =\r\n              roiLayers[id][parseInt(automaticFullImageRoiLayer, 10)].layer\r\n                .regionRois.length > 0;\r\n            if (!gridExists) {\r\n              this.onChangeTool(\"gridtool\");\r\n              this.tools[\"gridtool\"].createGrid(1, true, false);\r\n              this.onChangeTool(\"none\");\r\n            }\r\n            this.onChangeTool(\"selection\");\r\n            this.setSelectedLayer(idx);\r\n          }, 2000);\r\n        }\r\n\r\n        // set file change false\r\n        setTimeout(() => {\r\n          this.props.resultTab.setFileChange(false);\r\n          if (this._isMounted) this.forceUpdate();\r\n        }, 1);\r\n      },\r\n      (error) => {\r\n        let failedFilePath = this.state.project.files.find(\r\n          (file) => file.id === id\r\n        ).sourcePath;\r\n        let msg = `Error importing file ${failedFilePath}:\\n${error}`;\r\n        console.log(msg);\r\n        window.openErrorDialog(msg);\r\n      },\r\n      (e) => {\r\n        console.log(\"Import progress:\", e);\r\n        this.setMountedState({ importProgress: e.progress });\r\n      }\r\n    );\r\n\r\n    if (this.state.showGallery) {\r\n      this.setMountedState({ showGallery: false });\r\n    }\r\n  }\r\n\r\n  deleteRoiLayersForScene = () => {\r\n    const { roiLayers, structures } = this.props.projectContext;\r\n    const { activeFileId } = this.state;\r\n\r\n    for (let i = 0; i < structures.length; i++) {\r\n      if (roiLayers[activeFileId][i]) {\r\n        roiLayers[activeFileId][i].layer.regionRois = [];\r\n        roiLayers[activeFileId][i].tree.clear();\r\n      }\r\n    }\r\n    this.props.projectContext.setState({ roiLayers });\r\n\r\n    // remove file from annotated files\r\n    const index = this.state.annotatedFileIds.indexOf(activeFileId);\r\n    if (index > -1) {\r\n      this.state.annotatedFileIds.splice(index, 1);\r\n    }\r\n  };\r\n\r\n  // change the active tool\r\n  onChangeTool = (activeTool, params) => {\r\n    if (\r\n      activeTool === \"iam_ai_inference\" &&\r\n      this.props.projectContext.activeTab === 1 &&\r\n      !this.state.aiUsedStructures.filter(\r\n        (e) =>\r\n          e.id ===\r\n          this.props.projectContext.structures[\r\n            this.props.projectContext.selectedLayer\r\n          ].id\r\n      ).length > 0\r\n    ) {\r\n      activeTool = \"none\";\r\n    }\r\n    if (this.state.showGallery) {\r\n      setTimeout(() => this.galleryChangeTool(activeTool, params), 100);\r\n    } else {\r\n      if (\r\n        this.rendererdict[this.state.activeFileId] &&\r\n        this.rendererdict[this.state.activeFileId].updatePreviewRect &&\r\n        this.checkTool(activeTool)\r\n      ) {\r\n        if (\r\n          this.tools[this.state.activeTool] &&\r\n          typeof this.tools[this.state.activeTool].exit === \"function\"\r\n        ) {\r\n          this.tools[this.state.activeTool].exit();\r\n        }\r\n\r\n        this.setMountedState({ activeTool }, () => {\r\n          this.rendererdict[this.state.activeFileId].updatePreviewRect(\r\n            activeTool\r\n          );\r\n\r\n          this.rendererdict[\r\n            this.state.activeFileId\r\n          ].props.drawLayer.regionRois = [];\r\n\r\n          let tool = this.tools[activeTool];\r\n          if (tool && tool.onParameterChange) {\r\n            tool.onParameterChange(params);\r\n          }\r\n        });\r\n      }\r\n    }\r\n  };\r\n\r\n  checkTool = (e) => {\r\n    const { structures, selectedLayer } = this.props.projectContext;\r\n    // check if tool can be selected with selected structure\r\n    switch (e) {\r\n      case \"selection\":\r\n        if (!structures[selectedLayer].hasChild) {\r\n          window.showWarningSnackbar(\"Structure has no children.\");\r\n          return false;\r\n        }\r\n        break;\r\n      default:\r\n        break;\r\n    }\r\n    return true;\r\n  };\r\n\r\n  checkToolInConfig = (toolName) => {\r\n    if (this.state.viewerConfig) {\r\n      if (this.state.viewerConfig.project.toolsInProject[toolName]) {\r\n        return true;\r\n      } else {\r\n        return false;\r\n      }\r\n    }\r\n  };\r\n\r\n  checkPropertyInConfig = (property) => {\r\n    if (this.state.viewerConfig) {\r\n      if (this.state.viewerConfig.project.projectProperties[property]) {\r\n        return true;\r\n      } else {\r\n        return false;\r\n      }\r\n    }\r\n  };\r\n\r\n  resultTabActive = () => {\r\n    // check if active tab is result tab\r\n    if (!this.checkToolInConfig(\"ResultTab\")) {\r\n      return false;\r\n    }\r\n\r\n    // check which tabs exist in module --> then decide which index result tab has\r\n    let persisObj = this.props.persistentStorage.load(\"activeTab\");\r\n    let activeTab = persisObj ? persisObj : 0;\r\n    if (\r\n      this.checkToolInConfig(\"AICockpit\") &&\r\n      this.checkToolInConfig(\"RoiTab\")\r\n    ) {\r\n      // resultTab = 3\r\n      return activeTab === 3;\r\n    } else if (\r\n      this.checkToolInConfig(\"AICockpit\") ||\r\n      this.checkToolInConfig(\"RoiTab\")\r\n    ) {\r\n      // resultTab = 2\r\n      return activeTab === 2;\r\n    } else {\r\n      // resultTab = 1\r\n      return activeTab === 1;\r\n    }\r\n  };\r\n\r\n  updateStructureChange = () => {\r\n    setTimeout(() => this.setMountedState({ updateStructure: true }), 100);\r\n  };\r\n\r\n  onGallerychangePage() {\r\n    this.setMountedState({ activeTool: Tools.NONE });\r\n  }\r\n\r\n  galleryChangeTool(activeTool, params) {\r\n    if (this.checkTool(activeTool)) {\r\n      this.setMountedState({ activeTool: activeTool });\r\n      let tool = this.tools[activeTool];\r\n      if (tool && tool.onParameterChange) {\r\n        tool.onParameterChange(params);\r\n      }\r\n    }\r\n  }\r\n\r\n  onSelectFile = (e) => {\r\n    let { activeFileId, splitscreenFileIds } = this.state;\r\n    if (splitscreenFileIds.includes(e)) {\r\n      if (this.state.showFullscreen) {\r\n        if (this.sliderRef && this.state.showOverlay) {\r\n          this.sliderRef.fileCheck(e, () => {\r\n            this.addFileToFullscreen(e, this.sliderRef.state.checkedUp ? 1 : 0);\r\n          });\r\n        } else {\r\n          this.addFileToFullscreen(e, 0);\r\n        }\r\n      } else {\r\n        this.addFileToFullscreen(e, 0);\r\n      }\r\n      activeFileId = e;\r\n      this.props.persistentStorage.save(\"ActiveFileId\", activeFileId);\r\n      this.setMountedState({\r\n        activeFileId,\r\n      });\r\n    } else {\r\n      this.props.tiles.resetVisibleImages(); //prevent ram issue\r\n      this.props.tiles.resetColoredImages(); //prevent ram issue\r\n      //this.props.tiles.setFileId(e);\r\n      //this.props.projectContext.setChangingFile(true);\r\n      // save annotations when changing file\r\n\r\n      this.saveFunction(null, () => {\r\n        this.onSwitchFileSplitscreen(e);\r\n        if (this.sliderRef && this.state.showOverlay) {\r\n          this.addFileToFullscreen(e, this.sliderRef.state.checkedUp ? 0 : 1);\r\n        } else {\r\n          this.addFileToFullscreen(e, 0);\r\n        }\r\n        if (\r\n          !(\r\n            this.state.project.type.includes(\"HistoPointCounting\") ||\r\n            this.state.project.type.includes(\"HistoClassification\")\r\n          )\r\n        ) {\r\n          this.clearOtherLayers();\r\n        }\r\n      });\r\n    }\r\n  };\r\n\r\n  onExcludeFilesToggle = (files, value) => {\r\n    let projectObject = this.state.project;\r\n    for (let file of files) {\r\n      for (let f of projectObject.files) {\r\n        if (file.id === f.id) {\r\n          file.excludeScene = value;\r\n        }\r\n      }\r\n    }\r\n    this.setMountedState(projectObject);\r\n  };\r\n\r\n  toggleFileTreeView = () => {\r\n    this.setMountedState({\r\n      showFileTreeView: !this.state.showFileTreeView,\r\n      containerKey: new Date().getTime(),\r\n    });\r\n  };\r\n\r\n  onExportParameters = () => {\r\n    const { structures } = this.props.projectContext;\r\n\r\n    let dataStr =\r\n      \"data:text/json;charset=utf-8,\" +\r\n      encodeURIComponent(JSON.stringify(structures));\r\n    let dlAnchorElem = document.createElement(\"a\");\r\n    dlAnchorElem.setAttribute(\"href\", dataStr);\r\n    const strData = this.props.projectContext.getProjectStringInfos();\r\n    dlAnchorElem.setAttribute(\r\n      \"download\",\r\n      strData.name + \"_\" + strData.type + \"_\" + strData.fileName + \".strhsa\"\r\n    );\r\n    dlAnchorElem.click();\r\n    dlAnchorElem.remove();\r\n  };\r\n\r\n  //TODO: [HWB-910] to fix because probably broken because of turf integration\r\n  loadSCNXMLAnnotations(docstr) {\r\n    var parser = new DOMParser();\r\n    var doc = parser.parseFromString(docstr, \"application/xml\");\r\n    window.annodoc = doc;\r\n\r\n    const annotations = doc.getElementsByTagName(\"Annotation\");\r\n    for (let i = 0; i < annotations.length; i++) {\r\n      console.log(i, \"=>\", annotations[i]);\r\n      const regions = annotations[i].children[1];\r\n      for (let region of regions.children) {\r\n        if (region.tagName !== \"Region\") continue;\r\n        const vertices = region.children[1];\r\n        const points = [];\r\n        for (let vertex of vertices.children) {\r\n          points.push([\r\n            parseInt(vertex.getAttribute(\"X\")),\r\n            parseInt(vertex.getAttribute(\"Y\")),\r\n          ]);\r\n        }\r\n        let drawRegion = {\r\n          regions: [\r\n            // NOTE: the last two parameters might have to be adjusted in case of bugs.\r\n            createRegionRoi([points], \"#ff0000\", false, \"Tumor\", null, null),\r\n          ],\r\n          inverted: false,\r\n          bounds: calcBoundingBox([points]),\r\n        };\r\n        const { roiLayers } = this.props.projectContext;\r\n        // roiLayers[this.state.activeFileId][1].layer.regionRois.push(\r\n        //   drawRegion\r\n        // );\r\n        const selRoiLayer = roiLayers[this.state.activeFileId][i + 1]; // skip base roi\r\n        updateLayer(\r\n          selRoiLayer.layer,\r\n          drawRegion,\r\n          false,\r\n          \"#ff0000\",\r\n          false,\r\n          \"Tumor\",\r\n          selRoiLayer.tree\r\n        );\r\n      }\r\n    }\r\n  }\r\n\r\n  onImportParameters = (e) => {\r\n    let files = e.target.files;\r\n    if (files.length <= 0) return false;\r\n\r\n    let fr = new FileReader();\r\n    fr.onload = (e) => {\r\n      try {\r\n        if (e.target.result.startsWith(\"<Annotations\")) {\r\n          // SCN Annotation XML File\r\n          this.loadSCNXMLAnnotations(e.target.result);\r\n        } else {\r\n          // exported structures\r\n          let structures = JSON.parse(e.target.result);\r\n          if (structures.length > 0 && structures[0].label) {\r\n            this.props.projectContext.importStructures(structures);\r\n          } else {\r\n            window.showErrorSnackbar(\"File not supported!\");\r\n          }\r\n        }\r\n      } catch (e) {\r\n        console.log(\"import errror:\", e);\r\n        window.showErrorSnackbar(\"File not supported!\");\r\n      }\r\n    };\r\n    fr.readAsText(files.item(0));\r\n  };\r\n\r\n  deleteforAllScenes = (selectedLayer) => {\r\n    const { roiLayers } = this.props.projectContext;\r\n    Object.keys(roiLayers).forEach((e) => {\r\n      roiLayers[e][selectedLayer].layer.regionRois = [];\r\n      roiLayers[e][selectedLayer].tree.clear();\r\n    });\r\n    this.props.projectContext.setState({ roiLayers });\r\n  };\r\n\r\n  getNumberSubstructuresWithRois = () => {\r\n    const { activeFileId } = this.state;\r\n    const { selectedLayer, structures, roiLayers } = this.props.projectContext;\r\n    // calculate number of substructures that have rois (for export)\r\n    let parentLayer = this.getParentIndexLayer(structures[selectedLayer]);\r\n    let nextParentLayer = parentLayer + 1;\r\n    // calculate next substructure or parentlayer on same subtypelevel\r\n    for (let i = parentLayer; i < structures.length; i++) {\r\n      if (\r\n        !structures[i].classificationSubtype &&\r\n        structures[i].subtypeLevel === structures[parentLayer].subtypeLevel\r\n      ) {\r\n        nextParentLayer = i;\r\n      }\r\n    }\r\n\r\n    // count substructures with rois between parentlayer and nextparentlayer\r\n    let count = 0;\r\n    for (let i = parentLayer + 1; i < nextParentLayer; i++) {\r\n      if (\r\n        structures[i].isSubtype &&\r\n        !structures[i].classificationSubtype &&\r\n        roiLayers[activeFileId][i].layer.regionRois.length !== 0\r\n      ) {\r\n        count = count + 1;\r\n      }\r\n    }\r\n    return count;\r\n  };\r\n\r\n  createProjectModel = (layersToSave, previewRect) => {\r\n    const {\r\n      project,\r\n      histogramConfig,\r\n      viewerConfig,\r\n      formDataAICockpit,\r\n      commentLayers,\r\n      landmarkLayers,\r\n    } = this.state;\r\n    const { selectedLayer, structures, roiLayers, user } =\r\n      this.props.projectContext;\r\n\r\n    //this.adjustRoiLayers();\r\n    let parentLayer = this.getParentIndexLayer(structures[selectedLayer]);\r\n    const projectModel = {\r\n      name: project.name,\r\n      user: user,\r\n      id: project.id,\r\n      readableId: project.readableId,\r\n      metaData: JSON.parse(project.metaData),\r\n      type: project.type,\r\n      tools: viewerConfig.project.tools,\r\n      job: viewerConfig.project.job,\r\n      structures: structures,\r\n      formDataAICockpit: JSON.stringify(formDataAICockpit),\r\n      tMatrices: this.props.tiles.getAllTransformationMatrices(),\r\n      tFactors: this.props.tiles.getAllTransformationFactors(),\r\n      tOffsets: this.props.tiles.getAllTransformationOffsets(),\r\n      files: project.files.map((file) => {\r\n        let frameArray = this.state.frameArrayDict[file.id];\r\n\r\n        return {\r\n          id: file.id,\r\n          fileName: file.fileName,\r\n          sourcePath: file.sourcePath,\r\n          histogram: histogramConfig[file.id],\r\n          scene: file.scene,\r\n          excludeScene: file.excludeScene,\r\n          fullyAnnotated: file.fullyAnnotated,\r\n          annotated: file.annotated === true,\r\n          saved: file.saved,\r\n          classId: file.classId,\r\n          commentRois: commentLayers[file.id].commentRois.map((roi, i) => {\r\n            return {\r\n              id: i,\r\n              regions: roi.regions,\r\n              color: roi.color,\r\n              type: roi.type,\r\n              commentValue: roi.commentValue,\r\n            };\r\n          }),\r\n          landmarkRois: landmarkLayers[file.id].landmarkRois.map((roi, i) => {\r\n            return {\r\n              id: i,\r\n              regions: roi.regions,\r\n              color: roi.color,\r\n              type: roi.type,\r\n              commentValue: roi.commentValue,\r\n            };\r\n          }),\r\n          annotations: roiLayers[file.id].reduce((acc, roiLayer, i) => {\r\n            if (\r\n              (roiLayer.layer.regionRois ||\r\n                this.state.annotatedFileIds.includes(file.id)) &&\r\n              layersToSave !== \"none\"\r\n            ) {\r\n              if (layersToSave === \"all\" || layersToSave.includes(i)) {\r\n                let rois;\r\n                let current_id = roiLayer.id;\r\n                let idTimeArr = {};\r\n\r\n                for (let key in frameArray) {\r\n                  if (key in frameArray) {\r\n                    for (\r\n                      let idLayer = 0;\r\n                      idLayer < frameArray[key].length;\r\n                      idLayer++\r\n                    ) {\r\n                      if (frameArray[key][idLayer].id === current_id) {\r\n                        let tArrRois =\r\n                          frameArray[key][idLayer].layer.regionRois;\r\n                        let frameIdTimeArr = {\r\n                          type: \"MultiPolygon\",\r\n                          coordinates: tArrRois.map((c) => c.regions),\r\n                          withHoles: true,\r\n                          color1: tArrRois.map((c) => [c.color]),\r\n                          subtype: tArrRois.map((c) => [c.isSubtype]),\r\n                          name: tArrRois.map((c) => [c.subtypeName]),\r\n                          aiAnnotated: tArrRois.map((c) => [c.aiAnnotated]),\r\n                          isAnnotated: tArrRois.map((c) => [c.isAnnotated]),\r\n                          isLabeled: tArrRois.map((c) => [c.isLabeled]),\r\n                          isSelObj: tArrRois.map((c) => [c.isSelObj]),\r\n                          isSaved: tArrRois.map((c) => [c.isSaved]),\r\n                          z: tArrRois.map((c) => [c.z]),\r\n                          comment: tArrRois.map((c) => [c.comment]),\r\n                          tileName: tArrRois.map((c) => [c.tileName]),\r\n                          structureId: tArrRois.map((c) => [c.structureId]),\r\n                          isObject: tArrRois.map((c) => [c.isObject]),\r\n                          frequencyClass: tArrRois.map((c) => [\r\n                            c.frequencyClass,\r\n                          ]),\r\n                        };\r\n                        if (\r\n                          frameArray[key][idLayer].isKeyFrame &&\r\n                          frameArray[key][idLayer].isKeyFrame === true\r\n                        ) {\r\n                          frameIdTimeArr.isKeyFrame = true;\r\n                        }\r\n                        idTimeArr[key] = frameIdTimeArr;\r\n                      }\r\n                    }\r\n                  }\r\n                }\r\n                if (previewRect) {\r\n                  rois = roiLayer.tree\r\n                    .search({\r\n                      minX: previewRect.x,\r\n                      minY: previewRect.y,\r\n                      maxX: previewRect.x + previewRect.w,\r\n                      maxY: previewRect.y + previewRect.h,\r\n                    })\r\n                    .map((treeItem) => treeItem.roi);\r\n                } else {\r\n                  rois = roiLayer.layer.regionRois;\r\n                }\r\n                acc.push({\r\n                  id: i,\r\n                  geoJSON: {\r\n                    structID: current_id,\r\n                    idframeArray: idTimeArr,\r\n                    type: \"MultiPolygon\",\r\n                    coordinates: rois.map((c) => c.regions),\r\n                    withHoles: true,\r\n                    color1: rois.map((c) => [c.color]),\r\n                    subtype: rois.map((c) => [c.isSubtype]),\r\n                    name: rois.map((c) => [c.subtypeName]),\r\n                    aiAnnotated: rois.map((c) => [c.aiAnnotated]),\r\n                    isAnnotated: rois.map((c) => [c.isAnnotated]),\r\n                    isLabeled: rois.map((c) => [c.isLabeled]),\r\n                    isSelObj: rois.map((c) => [c.isSelObj]),\r\n                    isSaved: rois.map((c) => [c.isSaved]),\r\n                    z: rois.map((c) => [c.z]),\r\n                    comment: rois.map((c) => [c.comment]),\r\n                    tileName: rois.map((c) => [c.tileName]),\r\n                    structureId: rois.map((c) => [c.structureId]),\r\n                    isObject: rois.map((c) => [c.isObject]),\r\n                    frequencyClass: rois.map((c) => [c.frequencyClass]),\r\n                  },\r\n                });\r\n              }\r\n            }\r\n            return acc;\r\n          }, []),\r\n        };\r\n      }),\r\n\r\n      selectedObjects: this.selObjects.coordinates,\r\n      selLayer: selectedLayer,\r\n      selStructure: structures[selectedLayer].label,\r\n      selStructureId: structures[parentLayer].id,\r\n      exportSubstructures: this.state.exportSubstructures, // not used at the moment (always export substructures)\r\n      onlyAnnotations: false,\r\n      zLevelClassification: this.props.tiles.getZLevel(),\r\n      numberSubstructuresWithRois: this.getNumberSubstructuresWithRois(),\r\n    };\r\n    return projectModel;\r\n  };\r\n\r\n  getSelectedObjects = (x, fileID, fromActiveLearning) => {\r\n    const { activeFileId } = this.state;\r\n    //const { selectedLayer, roiLayers } = this.props.projectContext;\r\n    // get classified objects from backend/training/classificaton and assign class and new properties\r\n\r\n    this.selObjects = x;\r\n    this.selObjs = true;\r\n    this.updateCount = this.updateCount + 1;\r\n\r\n    // isSaved property removed --> because with isSaved labeled images can not be classified by ai\r\n    /*if (roiLayers[fileID] && roiLayers[fileID][selectedLayer]) {\r\n      // set isSaved property true for all labeled images (by user) --> do not save twice (in next iterations)\r\n      roiLayers[fileID][selectedLayer].layer.regionRois.forEach(function (\r\n        element\r\n      ) {\r\n        if (!element.aiAnnotated && element.isSubtype) {\r\n          // if roi is subtype but not annotated by ai\r\n          element.isSaved = true;\r\n        } else if (element.aiAnnotated && element.isLabeled) {\r\n          // if roi annotated by ai but classified by user afterwards\r\n          element.isSaved = true;\r\n        }\r\n      });\r\n    }*/\r\n\r\n    // if in current file --> set properties for objects/rois\r\n    if (fileID === activeFileId) {\r\n      this.setAIObjects(fromActiveLearning);\r\n    }\r\n\r\n    // set training finished and update\r\n    this.setAlruns(false);\r\n    if (this._isMounted) this.forceUpdate();\r\n  };\r\n\r\n  setAIObjects = (fromActiveLearning) => {\r\n    const { activeFileId } = this.state;\r\n    const { selectedLayer, structures, roiLayers } = this.props.projectContext;\r\n\r\n    // set properties for rois (classification result)\r\n    let fileID = activeFileId;\r\n    let Objs = this.selObjects;\r\n\r\n    if (Objs && Objs.coordinates.length > 0 && Objs.coordinates[0] !== null) {\r\n      roiLayers[fileID][selectedLayer].layer.regionRois.forEach(function (roi) {\r\n        // get same element from backend results\r\n        let r = Objs.coordinates.filter(\r\n          (element) =>\r\n            parseInt(roi.bounds.left, 10) === element.x &&\r\n            parseInt(roi.bounds.top, 10) === element.y\r\n        )[0];\r\n        // only set new properties if roi is not already classified by user\r\n        if (r && !roi.isLabeled) {\r\n          let subtypeStructureIdx = structures.findIndex(\r\n            (element) => element.id === r.id && element.isSubtype\r\n          );\r\n          roi.structureId = structures[subtypeStructureIdx].id;\r\n          roi.color = structures[subtypeStructureIdx].color;\r\n          roi.subtypeColor = structures[subtypeStructureIdx].color;\r\n          roi.subtypeName = structures[subtypeStructureIdx].label;\r\n          roi.aiAnnotated = true;\r\n          roi.isSelObj = true;\r\n        }\r\n      });\r\n    }\r\n\r\n    // if fromActiveLearning --> sort rois by uncertainty\r\n    if (fromActiveLearning) {\r\n      // get index of last unlabeled element in roiLayer\r\n      let idxLastLabeled = 0;\r\n      roiLayers[fileID][selectedLayer].layer.regionRois.forEach(\r\n        (element, idx) => {\r\n          if (element.isLabeled) {\r\n            idxLastLabeled = idx;\r\n          }\r\n        }\r\n      );\r\n\r\n      // get array with labeled rois\r\n      let labeled = roiLayers[fileID][selectedLayer].layer.regionRois.slice(\r\n        0,\r\n        idxLastLabeled + 1\r\n      );\r\n      // get array with unlabeled rois\r\n      let unlabeled = roiLayers[fileID][selectedLayer].layer.regionRois.slice(\r\n        idxLastLabeled + 1\r\n      );\r\n\r\n      let sortedObjects = this.selObjects;\r\n      let newSortedArray = [];\r\n      sortedObjects.coordinates.forEach((element) => {\r\n        // check if element exists in array with unlabeled data\r\n        // get same element from backend results\r\n        let r = unlabeled.filter(\r\n          (roi) =>\r\n            parseInt(roi.bounds.left, 10) === element.x &&\r\n            parseInt(roi.bounds.top, 10) === element.y\r\n        );\r\n        // if element is in array --> put in new sorted array\r\n        if (r[0]) {\r\n          newSortedArray.push(r[0]);\r\n        }\r\n      });\r\n      let updatedRoiLayer = labeled.concat(newSortedArray);\r\n      roiLayers[fileID][selectedLayer].layer.regionRois = updatedRoiLayer;\r\n    }\r\n\r\n    this.selObjects = {\r\n      coordinates: [],\r\n    };\r\n\r\n    // set firstTimeGallery true after scene switch\r\n    this.setFirstTimeGallery();\r\n  };\r\n\r\n  setFirstTimeGallery = () => {\r\n    // firstTimeGallery = true --> load new tiles\r\n    const { activeFileId } = this.state;\r\n    const { selectedLayer, roiLayers } = this.props.projectContext;\r\n\r\n    roiLayers[activeFileId][selectedLayer].layer.regionRois.forEach(function (\r\n      element\r\n    ) {\r\n      element.firstTimeGallery = true;\r\n    });\r\n  };\r\n\r\n  setSelectedLayer = (x) => {\r\n    if (this.state.selLayer !== x) {\r\n      this.props.projectContext.setState({ selectedLayer: x });\r\n    }\r\n  };\r\n\r\n  saveChangesGallery(fromExport) {\r\n    this.saveFunction(fromExport);\r\n  }\r\n\r\n  updateViewer() {\r\n    if (this._isMounted) this.forceUpdate();\r\n  }\r\n\r\n  setFUllyAnnotated = () => {\r\n    let projectObject = this.state.project;\r\n    projectObject.files[this.findFileIndex()].fullyAnnotated = true;\r\n    this.setMountedState({ project: projectObject });\r\n  };\r\n\r\n  setAnnotated = () => {\r\n    let projectObject = this.state.project;\r\n    projectObject.files[this.findFileIndex()].annotated = true;\r\n    this.setMountedState({ project: projectObject });\r\n  };\r\n\r\n  findFileIndex = () => {\r\n    let idx = 0;\r\n    this.state.project.files.forEach((element, i) => {\r\n      if (element.id === this.state.activeFileId) {\r\n        idx = i;\r\n      }\r\n    });\r\n    return idx;\r\n  };\r\n\r\n  setApplyModelAfterTraining = (e) => {\r\n    // set if apply model after training to unlabeled images\r\n    this.applyModelAfterTraining = e;\r\n    if (this._isMounted) this.forceUpdate();\r\n  };\r\n\r\n  startAutomaticTraining = () => {\r\n    // start taining of dl model after x annotations automatically\r\n    this.saveFunction();\r\n    this.automaticTraining = true;\r\n\r\n    // first do training with all annotated objects\r\n    this.applyDL(\r\n      this.tools[\"alm_gallery_tool\"],\r\n      this.props.id,\r\n      this.state.activeFileId,\r\n      false\r\n    );\r\n\r\n    this.setAlruns(true);\r\n    // then do classification for all unlabeled objects\r\n    this.applyModelAfterTraining = true;\r\n  };\r\n\r\n  startPassiveLearningTraining = (tool, projectId, fileId) => {\r\n    let previewRect = {\r\n      // rect parameters for train model\r\n      x: 2,\r\n      y: 2,\r\n      w: 2,\r\n      h: 2,\r\n    };\r\n    if (tool.toolConfig.name.includes(\"alm_\")) {\r\n      if (!this.automaticTraining) {\r\n        // show loading spinner\r\n        this.props.spinloader.show();\r\n      }\r\n      window.showSuccessSnackbar(\"Start training\");\r\n      Backend.activeLearningSignalR(\r\n        {\r\n          name: tool.toolConfig.name,\r\n          projectId: projectId,\r\n          fileIds: [fileId],\r\n          parameters: previewRect,\r\n          preview: false,\r\n          rect: null,\r\n          project: this.createProjectModel(\"none\"),\r\n        },\r\n        (alModel) => {\r\n          this.setAlruns(false);\r\n          this.props.spinloader.hide();\r\n          if (this.applyModelAfterTraining) {\r\n            // apply model to all unlabeled rois after training\r\n            this.applyDL(\r\n              this.tools[\"alm_gallery_tool\"],\r\n              this.props.id,\r\n              this.state.activeFileId,\r\n              true,\r\n              true\r\n            );\r\n          } else {\r\n            // put results from backend to frontend\r\n            this.getSelectedObjects(alModel, fileId);\r\n            this.saveFunction();\r\n            if (this._isMounted) this.forceUpdate();\r\n          }\r\n        },\r\n        (error) => {\r\n          window.openErrorDialog(error);\r\n        }\r\n      );\r\n    }\r\n  };\r\n\r\n  prepareImagesForTraining = (idx, tool, projectId, previewRect) => {\r\n    // save/crop all labeled images of all files before training\r\n    // if end of files --> stop\r\n    if (idx >= this.state.project.files.length) {\r\n      // when all images are saved --> start training\r\n      this.startPassiveLearningTraining(\r\n        tool,\r\n        projectId,\r\n        this.state.project.files[0].id\r\n      );\r\n      return;\r\n    }\r\n    // if saved --> images of secene already prepared --> TODO: fix this\r\n    // if (false /*this.state.project.files[idx].saved*/) {\r\n    //   this.prepareImagesForTraining(idx + 1, tool, projectId, previewRect);\r\n    //   return;\r\n    // }\r\n    // if not annotated --> no classified images for training in this file --> TODO: fix this\r\n    // else if (false /*!this.state.project.files[idx].annotated*/) {\r\n    //   this.prepareImagesForTraining(idx + 1, tool, projectId, previewRect);\r\n    //   return;\r\n    // }\r\n    else {\r\n      if (!this.automaticTraining) {\r\n        // show loading spinner\r\n        this.props.spinloader.show();\r\n      }\r\n      let fileIDs = this.state.project.files;\r\n      let x = this.createProjectModel(\"none\");\r\n      Backend.activeLearningSignalR(\r\n        {\r\n          name: tool.toolConfig.name,\r\n          projectId: projectId,\r\n          fileIDs: [fileIDs[idx].id],\r\n          parameters: previewRect,\r\n          preview: false,\r\n          rect: null,\r\n          project: x,\r\n        },\r\n        () => {\r\n          // set file saved true if all rois are annotated\r\n          if (fileIDs[idx].fullyAnnotated === true) {\r\n            let projectObject = this.state.project;\r\n            projectObject.files[idx].saved = true;\r\n            this.setMountedState({\r\n              project: projectObject,\r\n            });\r\n          }\r\n\r\n          // saves images for training recursively for each scene\r\n          if (idx + 1 < this.state.project.files.length) {\r\n            this.prepareImagesForTraining(\r\n              idx + 1,\r\n              tool,\r\n              projectId,\r\n              previewRect\r\n            );\r\n          } else {\r\n            // when all images are saved --> start training\r\n            this.startPassiveLearningTraining(tool, projectId, fileIDs[0].id);\r\n          }\r\n        },\r\n        (error) => {\r\n          window.openErrorDialog(error);\r\n        }\r\n      );\r\n    }\r\n  };\r\n\r\n  startClassification = (idx, tool, projectId, previewRect) => {\r\n    // start classification of rois with dl model\r\n    // if end of files --> stop\r\n    if (idx >= this.state.project.files.length) {\r\n      this.setAlruns(false);\r\n      this.props.spinloader.hide();\r\n      return;\r\n    }\r\n    // if fullyAnnotated --> no unlabeled images ( --> fix this: when fully annotated apply model does not work because fullyannotated can be set wrong)\r\n    // if (false /*this.state.project.files[idx].fullyAnnotated*/) {\r\n    //   this.startClassification(idx + 1, tool, projectId, previewRect);\r\n    // } else {\r\n    if (!this.automaticTraining) {\r\n      // show loading spinner\r\n      this.props.spinloader.show();\r\n    }\r\n    let fileIDs = this.state.project.files;\r\n    let projModel = this.createProjectModel(\"none\");\r\n    Backend.activeLearningSignalR(\r\n      {\r\n        name: tool.toolConfig.name,\r\n        projectId: projectId,\r\n        fileIDs: [fileIDs[idx].id],\r\n        parameters: previewRect,\r\n        preview: false,\r\n        rect: null,\r\n        project: projModel,\r\n      },\r\n      (alModel) => {\r\n        // do classification recursively for each scene\r\n        if (idx + 1 < this.state.project.files.length) {\r\n          this.getSelectedObjects(alModel, fileIDs[idx].id);\r\n          this.startClassification(idx + 1, tool, projectId, previewRect);\r\n        } else {\r\n          // put results from backend to frontend\r\n          this.getSelectedObjects(alModel, fileIDs[idx].id);\r\n          this.setAlruns(false);\r\n          this.props.spinloader.hide();\r\n        }\r\n      },\r\n      (error) => {\r\n        window.openErrorDialog(error);\r\n        this.props.spinloader.hide();\r\n      }\r\n    );\r\n    // }\r\n  };\r\n\r\n  applyDL(tool, projectId, fileId, passiveLearning, applyModel) {\r\n    let previewRect;\r\n    if (passiveLearning) {\r\n      // start passive learning\r\n      if (!applyModel) {\r\n        // start training\r\n        previewRect = {\r\n          // rect parameters for train model\r\n          x: 1,\r\n          y: 1,\r\n          w: 2,\r\n          h: 2,\r\n        };\r\n        if (tool.toolConfig.name.includes(\"alm_\")) {\r\n          window.showSuccessSnackbar(\"Preparing data for training\");\r\n          this.prepareImagesForTraining(0, tool, projectId, previewRect);\r\n        }\r\n      } else {\r\n        // Apply Model (classify unlabeled images)\r\n        previewRect = {\r\n          // rect parameters for apply model\r\n          x: 1,\r\n          y: 1,\r\n          w: 5,\r\n          h: 5,\r\n        };\r\n        if (tool.toolConfig.name.includes(\"alm_\")) {\r\n          window.showSuccessSnackbar(\"classify unlabeled images\");\r\n          this.startClassification(0, tool, projectId, previewRect);\r\n        }\r\n      }\r\n    } else {\r\n      // start active learning\r\n      previewRect = {\r\n        // rect parameters for al\r\n        x: 0,\r\n        y: 0,\r\n        w: 10,\r\n        h: 10,\r\n      };\r\n      window.showSuccessSnackbar(\"Start Active Learning ...\");\r\n      if (tool.toolConfig.name.includes(\"alm_\")) {\r\n        Backend.activeLearningSignalR(\r\n          {\r\n            name: tool.toolConfig.name,\r\n            projectId: projectId,\r\n            fileIds: [fileId],\r\n            parameters: previewRect,\r\n            preview: false,\r\n            rect: null,\r\n            project: this.createProjectModel(\"none\"),\r\n          },\r\n          (alModel) => {\r\n            // after active learning --> rois are sorted by uncertainty\r\n            this.getSelectedObjects(alModel, fileId, true);\r\n            this.saveFunction();\r\n            if (this._isMounted) this.forceUpdate();\r\n          },\r\n          (error) => {\r\n            window.openErrorDialog(error);\r\n          }\r\n        );\r\n      }\r\n    }\r\n  }\r\n\r\n  setAlruns(x) {\r\n    this.setMountedState({ alruns: x, activeTool: Tools.NONE });\r\n  }\r\n\r\n  trainingWarning = (warning) => {\r\n    // give snackbar warnings\r\n    if (warning === \"subtype\") {\r\n      window.showWarningSnackbar(\"Please switch to parent.\");\r\n    } else if (warning === \"tooFewAnnotations\") {\r\n      window.showWarningSnackbar(\r\n        \"One subtype needs at least 5 objects to start training. And one other subtype needs at least one object.\"\r\n      );\r\n    } else if (warning === \"hasNoChilds\") {\r\n      window.showWarningSnackbar(\"This structure has no classes.\");\r\n    }\r\n  };\r\n\r\n  trainingProgress = (message) => {\r\n    if (\r\n      this.tools[this.state.activeTool] &&\r\n      (this.tools[this.state.activeTool][\"name\"] === \"AI Training\" ||\r\n        this.tools[this.state.activeTool][\"name\"] === \"Instance Segmentation\" ||\r\n        this.tools[this.state.activeTool][\"name\"] === \"Classification\")\r\n    ) {\r\n      this.tools[this.state.activeTool].updateTrainingProgress(message);\r\n      if (message.includes(\"training done!!!\")) this.props.spinloader.hide();\r\n      else if (message.includes(\"No annotations in\")) {\r\n        window.showWarningSnackbar(message);\r\n      } else if (message.includes(\"Continue training with\")) {\r\n        window.showSuccessSnackbar(message);\r\n      } else if (message.includes(\"Train model from scratch\")) {\r\n        window.showSuccessSnackbar(message);\r\n      } else if (message.includes(\"time elapsed\")) this.props.spinloader.hide();\r\n      else if (\r\n        message.includes(\r\n          \"No trainingdata, please annotate at least 15+ objects\"\r\n        )\r\n      ) {\r\n        window.showErrorSnackbar(message);\r\n        this.props.spinloader.hide();\r\n      }\r\n    }\r\n  };\r\n\r\n  galleryTrainingProgress = (message) => {\r\n    // get training progress for gallery from backend messages\r\n    if (this.gallery) {\r\n      this.gallery.setProgress(message);\r\n    }\r\n  };\r\n\r\n  setGridSize = (x) => {\r\n    this.setMountedState({ gridSize: x });\r\n  };\r\n\r\n  /**\r\n   * Writes all ROIs into both the parent (sub-) structure (as usual) as well\r\n   * as the corresponding subtypes.\r\n   * This causes a considerable overhead for the filesize, but removing it can\r\n   * cause issues when training.\r\n   */\r\n  adjustRoiLayers = () => {\r\n    // make all subtype rois in subtype roilayers\r\n    const { structures, roiLayers } = this.props.projectContext;\r\n\r\n    for (let file of this.state.project.files) {\r\n      let fileId = file.id;\r\n      if (typeof roiLayers[fileId] === \"undefined\") {\r\n        continue;\r\n      }\r\n      // make subtype rois in subtype layers\r\n      structures.forEach((element, idx) => {\r\n        if (structures[idx].classificationSubtype) {\r\n          let childIds = [];\r\n          let childLabels = [];\r\n          this.findAllSubtypes(structures[idx]).forEach((element) => {\r\n            childIds.push(element.id);\r\n            childLabels.push(element.label);\r\n          });\r\n\r\n          let parentLayer = this.getParentIndexLayer(structures[idx]);\r\n          let subtypeLayer = structures.findIndex(\r\n            (element) => element.id === structures[idx].id\r\n          );\r\n\r\n          if (\r\n            roiLayers[fileId][parentLayer] &&\r\n            roiLayers[fileId][subtypeLayer]\r\n          ) {\r\n            roiLayers[fileId][parentLayer].layer.regionRois.forEach((roi) => {\r\n              if (\r\n                roi.structureId === element.id ||\r\n                childIds.includes(roi.structureId) ||\r\n                childLabels.includes(roi.subtypeName)\r\n              ) {\r\n                roiLayers[fileId][subtypeLayer].layer.regionRois.push(roi);\r\n              }\r\n            });\r\n          }\r\n        }\r\n      });\r\n    }\r\n  };\r\n\r\n  findChilds = (str) => {\r\n    const { structures } = this.props.projectContext;\r\n    // return direct classification subtypes\r\n    return structures.filter(\r\n      (element) =>\r\n        element.subtypeLevel === str.subtypeLevel + 1 &&\r\n        element.parentId === str.id &&\r\n        element.classificationSubtype\r\n    );\r\n  };\r\n\r\n  findAllSubtypes = (structure) => {\r\n    // get all subtypes of selectedLayer (also subsubtypes)\r\n\r\n    // first get all direct childs\r\n    let childs = this.findChilds(structure);\r\n    let allChilds = [];\r\n\r\n    // search for childs of childs until no childs are checked for childs\r\n    while (childs.length !== 0) {\r\n      // code block to be executed\r\n      childs = childs.concat(this.findChilds(childs[0]));\r\n      if (!allChilds.includes(childs[0]) && childs[0].classificationSubtype) {\r\n        allChilds.push(childs[0]);\r\n      }\r\n      childs.shift();\r\n    }\r\n    return allChilds;\r\n  };\r\n\r\n  /**\r\n   * Add object key and value to string\r\n   * @param {*} string tmp string that is used to store parts of a large object\r\n   * @param {*} key object key that should be added\r\n   * @param {*} value object value(s) that should be added\r\n   * @param {*} filesByteArray array of string parts\r\n   * @returns [string, filesByteArray] after updating\r\n   */\r\n  addStuff = (string, key, value, filesByteArray) => {\r\n    string += '\"' + key + '\":' + JSON.stringify(value);\r\n    let res = this.checkStringLength(string, filesByteArray);\r\n    return res;\r\n  };\r\n\r\n  /**\r\n   * check string Length and if larger then 10000 chars, update filesByteArray\r\n   * @param {*} string tmp string that is used to store parts of a large object\r\n   * @param {*} filesByteArray array of string parts\r\n   * @returns [string, filesByteArray] after updating\r\n   */\r\n  checkStringLength = (string, filesByteArray) => {\r\n    // if more then 10000 chars add current string part to filesByteArray\r\n    // clear string\r\n    if (string.length > 10000) {\r\n      filesByteArray.push(string);\r\n      string = \"\";\r\n    }\r\n    return [string, filesByteArray];\r\n  };\r\n\r\n  /**\r\n   * finalize filesByteArray by adding the last string part\r\n   * @param {*} string tmp string that is used to store parts of a large object\r\n   * @param {*} filesByteArray array of string parts\r\n   * @returns [string, filesByteArray] after updating\r\n   */\r\n  finalizeByteArray(string, filesByteArray) {\r\n    filesByteArray.push(string);\r\n    string = \"\";\r\n    return [string, filesByteArray];\r\n  }\r\n\r\n  /**\r\n   * convert JSON files object, that's to large for JSON.stringify() manually\r\n   * @param {*} files JSON object\r\n   * @returns blob\r\n   */\r\n  largeFilesJSONtoBlobConverter = (files) => {\r\n    let filesByteArray = [];\r\n    let res;\r\n    // Manually decompose the files object, save to string, split and convert parts to byteArray\r\n    // Issue! ByteArray get's to big at some point -> blob has to be created and updated on the go\r\n    let tmpString = \"[\";\r\n    for (let fileIdx in files) {\r\n      let file = files[fileIdx];\r\n      let keys = Object.keys(files[fileIdx]);\r\n      tmpString += \"{\";\r\n      for (let keyIdx in keys) {\r\n        let key = keys[keyIdx];\r\n        let value = file[key];\r\n        if (key !== \"annotations\") {\r\n          res = this.addStuff(tmpString, key, value, filesByteArray);\r\n          tmpString = res[0];\r\n          filesByteArray = res[1];\r\n        } else {\r\n          let annotations = value;\r\n          // Array of Objects\r\n          tmpString += '\"annotations\":[';\r\n          for (let annoIdx in annotations) {\r\n            // new Object\r\n            tmpString += \"{\";\r\n            let anno = annotations[annoIdx];\r\n            let annoKeys = Object.keys(anno);\r\n            for (let annoKeyIdx in annoKeys) {\r\n              let annoKey = annoKeys[annoKeyIdx];\r\n              let annoValue = anno[annoKey];\r\n              if (annoKey !== \"geoJSON\") {\r\n                res = this.addStuff(\r\n                  tmpString,\r\n                  annoKey,\r\n                  annoValue,\r\n                  filesByteArray\r\n                );\r\n                tmpString = res[0];\r\n                filesByteArray = res[1];\r\n              } else {\r\n                tmpString += '\"geoJSON\":{';\r\n                let geoJSON = annoValue;\r\n                let geoJSONKeys = Object.keys(geoJSON);\r\n                for (let geoJSONKeyIdx in geoJSONKeys) {\r\n                  let paramKey = geoJSONKeys[geoJSONKeyIdx];\r\n                  let paramValue = geoJSON[paramKey];\r\n                  if (paramKey !== \"coordinates\") {\r\n                    res = this.addStuff(\r\n                      tmpString,\r\n                      paramKey,\r\n                      paramValue,\r\n                      filesByteArray\r\n                    );\r\n                    tmpString = res[0];\r\n                    filesByteArray = res[1];\r\n                  } else {\r\n                    tmpString += '\"coordinates\":[';\r\n                    for (let polyIdx in paramValue) {\r\n                      let poly = paramValue[polyIdx];\r\n                      tmpString += JSON.stringify(poly);\r\n                      if (polyIdx < paramValue.length - 1) tmpString += \",\";\r\n                      let res = this.checkStringLength(\r\n                        tmpString,\r\n                        filesByteArray\r\n                      );\r\n                      tmpString = res[0];\r\n                      filesByteArray = res[1];\r\n                    }\r\n                    tmpString += \"]\";\r\n                  }\r\n                  if (geoJSONKeyIdx < geoJSONKeys.length - 1) tmpString += \",\";\r\n                }\r\n                tmpString += \"}\";\r\n              }\r\n              if (annoKeyIdx < annoKeys.length - 1) tmpString += \",\";\r\n            }\r\n            tmpString += \"}\";\r\n            if (annoIdx < annotations.length - 1) tmpString += \",\";\r\n          }\r\n          tmpString += \"]\";\r\n        }\r\n        if (keyIdx < keys.length - 1) tmpString += \",\";\r\n      }\r\n      tmpString += \"}\";\r\n      if (fileIdx < files.length - 1) tmpString += \",\";\r\n    }\r\n    tmpString += \"]\";\r\n    res = this.finalizeByteArray(tmpString, filesByteArray);\r\n    tmpString = \"\";\r\n    filesByteArray = res[1];\r\n\r\n    // create blob from filesByteArray\r\n    let blob = new Blob(filesByteArray, {\r\n      type: \"application/octet-stream\",\r\n    });\r\n    filesByteArray = [];\r\n    console.log(\"blob\", blob);\r\n\r\n    return blob;\r\n  };\r\n\r\n  saveWithSpinloader(projectModel, callback = this.defaultSaveCallback) {\r\n    if (this.loadAnnotationsFromDB) {\r\n      window.showWarningSnackbar(\r\n        \"Not saved because of too many Annotations in project!\"\r\n      );\r\n      if (typeof callback === \"function\") {\r\n        callback();\r\n      }\r\n      return;\r\n    }\r\n    this.props.spinloader.show();\r\n    setTimeout(() => {\r\n      let files = projectModel.files.slice();\r\n\r\n      let blob;\r\n      try {\r\n        blob = new Blob([JSON.stringify(files)]);\r\n      } catch {\r\n        console.log(\r\n          \"Files to large for JSON.stringify(). Continuing with custom function.\"\r\n        );\r\n        blob = this.largeFilesJSONtoBlobConverter(files);\r\n      }\r\n\r\n      let projectId = projectModel.id;\r\n      let fileId = this.state.activeFileId;\r\n      // empty annotations, to save only project\r\n      for (let file of projectModel.files) {\r\n        // save without annotations, since annotations will be saved seperately\r\n        file.annotations = null;\r\n      }\r\n      \r\n      if (this.state.annotationsAreReduced) {\r\n        window.showErrorSnackbar(\"Sample Annotations can't be saved!\");\r\n        this.props.spinloader.hide();\r\n        if (typeof callback === \"function\") {\r\n          callback();\r\n        }\r\n        return;\r\n      }\r\n\r\n      Backend.saveProject(projectModel, (data) => {\r\n        if (data.success) {\r\n          Backend.saveAnnotations(projectId, fileId, blob, (data) => {\r\n            this.props.spinloader.hide();\r\n            if (data.success) {\r\n              window.showSuccessSnackbar(\"Project saved succesfully!\");\r\n              if (typeof callback === \"function\") {\r\n                callback();\r\n              }\r\n            } else {\r\n              window.showErrorSnackbar(\r\n                \"Project couldn't be saved! Failed while saving annotations!\"\r\n              );\r\n            }\r\n          });\r\n        } else {\r\n          this.props.spinloader.hide();\r\n          window.showErrorSnackbar(\"Project couldn't be saved!\");\r\n        }\r\n      });\r\n    }, 0);\r\n  }\r\n\r\n  defaultSaveCallback() {\r\n    console.log(\"Saved successfully\");\r\n  }\r\n\r\n  saveFunction(fromExport, callback = this.defaultSaveCallback) {\r\n    // this.props.persistentStorage.save(\"ActiveFileId\", this.state.activeFileId);\r\n    //Backend.saveProject(projectModel, () => { });\r\n    this.props.persistentStorage.save(\r\n      \"SplitscreenFileIds\",\r\n      this.state.splitscreenFileIds\r\n    );\r\n    this.props.persistentStorage.save(\"ActiveFileId\", this.state.activeFileId);\r\n    const projectModel = this.createProjectModel(\"all\", null, fromExport);\r\n    this.saveWithSpinloader(projectModel, () => {\r\n      window.projectHistory.clear(); //clear to prevent history syncing bugs and clean up space\r\n      if (callback && typeof callback === \"function\") {\r\n        callback();\r\n      }\r\n    });\r\n  }\r\n\r\n  dataURItoBlob(dataURI) {\r\n    // convert base64/URLEncoded data component to raw binary data held in a string\r\n    var byteString;\r\n    if (dataURI.split(\",\")[0].indexOf(\"base64\") >= 0)\r\n      byteString = atob(dataURI.split(\",\")[1]);\r\n    else byteString = unescape(dataURI.split(\",\")[1]);\r\n\r\n    // separate out the mime component\r\n    var mimeString = dataURI.split(\",\")[0].split(\":\")[1].split(\";\")[0];\r\n\r\n    // write the bytes of the string to a typed array\r\n    var ia = new Uint8Array(byteString.length);\r\n    for (var i = 0; i < byteString.length; i++) {\r\n      ia[i] = byteString.charCodeAt(i);\r\n    }\r\n\r\n    return new Blob([ia], { type: mimeString });\r\n  }\r\n\r\n  /***\r\n   * Needed for ScreenshotTool\r\n   */\r\n  getProjectInfoString = () => {\r\n    const project = this.state.project;\r\n    const file = project.files.find(\r\n      (file) => file.id === this.state.activeFileId\r\n    );\r\n    const fileName = file.fileName.split(\".\").slice(0, -1).join(\".\");\r\n\r\n    // projekt_methode_filename_SceneNr_001.png\r\n    return project.name + \"_\" + project.type + \"_\" + fileName;\r\n  };\r\n\r\n  onSaveScreenshot = () => {\r\n    const file = this.state.project.files.find(\r\n      (file) => file.id === this.state.activeFileId\r\n    );\r\n\r\n    let img = this.rendererdict[this.state.activeFileId].canvas;\r\n\r\n    let ctx = img.getContext(\"2d\");\r\n\r\n    ctx.save();\r\n    let a = ctx.getTransform().a;\r\n    let d = ctx.getTransform().d;\r\n    let e = ctx.getTransform().e;\r\n    let f = ctx.getTransform().f;\r\n    ctx.setTransform(1, 0, 0, 1, 0, 0);\r\n\r\n    let projectName = file.fileName.split(\".\").slice(0, -1).join(\".\");\r\n    if (\r\n      this.state.project.type.includes(\"HistoPointCounting\") ||\r\n      this.state.project.type.includes(\"HistoClassification\")\r\n    ) {\r\n      if (projectName.includes(\"__\")) {\r\n        projectName = projectName.split(\"-\").slice(0, -4).join(\"-\");\r\n      } else {\r\n        projectName = projectName.split(\"-\").slice(0, -3).join(\"-\");\r\n      }\r\n    }\r\n\r\n    let fontSize = 20;\r\n    ctx.font = fontSize + \"px Arial\";\r\n\r\n    // Box-Position\r\n    let x = 10;\r\n    let y = 10;\r\n    let width = ctx.measureText(projectName).width + 10;\r\n    let height = parseInt(fontSize, 10) + 10;\r\n\r\n    // Draw Box-Border\r\n    ctx.fillStyle = \"black\";\r\n    let thickness = 1;\r\n    ctx.fillRect(\r\n      x - thickness,\r\n      y - thickness,\r\n      width + thickness * 2,\r\n      height + thickness * 2\r\n    );\r\n\r\n    // Draw Box\r\n    // ctx.globalAlpha = 0.8;\r\n    ctx.fillStyle = \"white\";\r\n    ctx.fillRect(x, y, width, height);\r\n\r\n    // Add Text\r\n    // ctx.globalAlpha = 1;\r\n    ctx.textAlign = \"left\";\r\n    ctx.textBaseline = \"top\";\r\n    ctx.fillStyle = \"black\";\r\n    ctx.fillText(projectName, 15, 15);\r\n\r\n    ctx.setTransform(a, 0, 0, d, e, f);\r\n    ctx.restore();\r\n\r\n    img = img.toDataURL(\"image/jpeg\", 0.9);\r\n\r\n    if (\r\n      this.state.project.type.includes(\"HistoPointCounting\") ||\r\n      this.state.project.type.includes(\"HistoClassification\")\r\n    ) {\r\n      const fileName = file.fileName.split(\".\").slice(0, -1).join(\".\");\r\n      let lastIndex = file.sourcePath.replace(/\\\\/g, \"/\").lastIndexOf(\"/\");\r\n      const folderPath = file.sourcePath.substring(0, lastIndex + 1);\r\n      Backend.saveScreenshot(\r\n        folderPath,\r\n        fileName,\r\n        this.dataURItoBlob(img),\r\n        (response) => {\r\n          window.showSuccessSnackbar(\r\n            \"Screenshot saved here: \" + response.savePath\r\n          );\r\n        }\r\n      );\r\n    } else {\r\n      let link = document.createElement(\"a\");\r\n\r\n      // projekt_methode_filename_SceneNr_001.png\r\n      let screenShotName =\r\n        this.getProjectInfoString() + \"_S\" + (file.scene + 1) + \".jpg\";\r\n      link.download = screenShotName;\r\n      link.href = img.replace(\"image/jpeg\", \"image/octet-stream\");\r\n      link.click();\r\n    }\r\n  };\r\n\r\n  getMousePosition = () => {\r\n    return [this.mousePosition.mouseX, this.mousePosition.mouseY];\r\n  };\r\n\r\n  zoomToRect = (rect) => {\r\n    // zoom to rect in viewer/rendererdict[this.state.activeFileId]\r\n    this.rendererdict[this.state.activeFileId].zoomFit();\r\n    //this.rendererdict[this.state.activeFileId].zoomToRect();\r\n    let width = rect.right - rect.left;\r\n    let height = rect.bottom - rect.top;\r\n    this.createZoomObjectForRect(\r\n      false,\r\n      rect.left - width,\r\n      rect.right + width,\r\n      rect.top - height,\r\n      rect.bottom + height\r\n    );\r\n  };\r\n\r\n  moveToRect = (rect) => {\r\n    // make roi/rect in center of screen\r\n    if (!this.rendererdict[this.state.activeFileId]) {\r\n      setTimeout(() => this.moveToRect(), 400);\r\n    } else {\r\n      this.rendererdict[this.state.activeFileId].centerRoi(rect);\r\n    }\r\n  };\r\n\r\n  onZoomOriginal = () => {\r\n    this.rendererdict[this.state.activeFileId].zoomOriginal();\r\n    if (this.state.showFullscreen) {\r\n      if (this.state.fullscreenChain) {\r\n        for (const value of Object.values(this.state.fullscreenFileIds)) {\r\n          this.rendererdict[\"Full\" + value].zoomOriginal();\r\n        }\r\n      } else {\r\n        this.rendererdict[\"Full\" + this.state.activeFileId].zoomOriginal();\r\n      }\r\n    }\r\n  };\r\n\r\n  onZoomOneToN = (x) => {\r\n    this.rendererdict[this.state.activeFileId].zoomOneToN(x);\r\n    if (this.state.showFullscreen) {\r\n      if (this.state.fullscreenChain) {\r\n        for (const value of Object.values(this.state.fullscreenFileIds)) {\r\n          this.rendererdict[\"Full\" + value].zoomOneToN(x);\r\n        }\r\n      } else {\r\n        this.rendererdict[\"Full\" + this.state.activeFileId].zoomOneToN(x);\r\n      }\r\n    }\r\n  };\r\n\r\n  fullscreenInitFilePlacement = (pt, fileId, factor, fs = false) => {\r\n    const r = fs\r\n      ? this.rendererdict[\"Full\" + fileId]\r\n      : this.rendererdict[fileId];\r\n\r\n    let o = this.props.tiles.getTransformationOffset(fileId);\r\n\r\n    r.ctx.setTransform(1, 0, 0, 1, 0, 0);\r\n    r.ctx.translate(pt.x, pt.y);\r\n    r.ctx.translate(-o[0] * factor, -o[1] * factor);\r\n    r.ctx.scale(factor, factor);\r\n  };\r\n\r\n  onZoomFit = () => {\r\n    if (this.state.showFullscreen) {\r\n      if (\r\n        this.state.fullscreenChain &&\r\n        this.state.fullscreenFileIds.length === 2\r\n      ) {\r\n        let pt = null;\r\n        let factor = null;\r\n\r\n        for (const value of Object.values(this.state.fullscreenFileIds)) {\r\n          let m = this.props.tiles.getTransformationMatrix(value);\r\n          this.rendererdict[\"Full\" + value].zoomFit();\r\n          if (!Array.isArray(m)) {\r\n            pt = this.rendererdict[\"Full\" + value].getPointInCanvasCoord(0, 0);\r\n            factor = this.rendererdict[\"Full\" + value].state.initialScale;\r\n          }\r\n        }\r\n        for (const value of Object.values(this.state.fullscreenFileIds)) {\r\n          let m = this.props.tiles.getTransformationMatrix(value);\r\n          if (Array.isArray(m) && pt !== null && factor !== null) {\r\n            this.fullscreenInitFilePlacement(pt, value, factor, true);\r\n          }\r\n        }\r\n      } else {\r\n        this.rendererdict[\"Full\" + this.state.activeFileId].zoomFit();\r\n      }\r\n    } else {\r\n      this.rendererdict[this.state.activeFileId].zoomFit();\r\n      if (Object.keys(this.chainListFileIds).length > 1) {\r\n        for (const value of Object.values(this.chainListFileIds)) {\r\n          if (value !== this.props.activeFileId)\r\n            this.rendererdict[value].zoomFit();\r\n        }\r\n      }\r\n      let pt = null;\r\n      let factor = null;\r\n\r\n      for (const value of Object.values(this.state.splitscreenFileIds)) {\r\n        let m = this.props.tiles.getTransformationMatrix(value);\r\n        if (!Array.isArray(m)) {\r\n          pt = this.rendererdict[value].getPointInCanvasCoord(0, 0);\r\n          factor = this.rendererdict[value].state.initialScale;\r\n        }\r\n      }\r\n      for (const value of Object.values(this.state.splitscreenFileIds)) {\r\n        let m = this.props.tiles.getTransformationMatrix(value);\r\n        if (Array.isArray(m) && pt !== null && factor !== null) {\r\n          this.fullscreenInitFilePlacement(pt, value, factor);\r\n        }\r\n      }\r\n    }\r\n  };\r\n\r\n  onZoomDelta = (delta) => {\r\n    this.rendererdict[this.state.activeFileId].zoomDelta(delta);\r\n    if (this.state.showFullscreen) {\r\n      if (this.state.fullscreenChain) {\r\n        for (const value of Object.values(this.state.fullscreenFileIds)) {\r\n          this.rendererdict[\"Full\" + value].zoomDelta(delta);\r\n        }\r\n      } else {\r\n        this.rendererdict[\"Full\" + this.state.activeFileId].zoomDelta(delta);\r\n      }\r\n    }\r\n  };\r\n\r\n  onSaveClick = (callback) => {\r\n    this.saveFunction(null, callback);\r\n  };\r\n\r\n  onSaveGalleryClick = () => {\r\n    this.saveFunction();\r\n  };\r\n\r\n  histogramChanged(histogramConfig) {\r\n    this.rendererdict[this.state.activeFileId].updateFLChannels(\r\n      histogramConfig\r\n    );\r\n  }\r\n\r\n  toggleSideBar = () => {\r\n    if (this.state.sideBarWidth > 0) {\r\n      this.setMountedState({\r\n        originalSideBarWidth: this.state.sideBarWidth,\r\n        sideBarWidth: 0,\r\n      });\r\n    } else {\r\n      this.setMountedState({\r\n        sideBarWidth: this.state.originalSideBarWidth,\r\n      });\r\n    }\r\n    this.updateDimensions();\r\n    this.props.spinloader.setRightWidth(\r\n      this.state.sideBarWidth +\r\n        this.state.verticalToolBarWidth +\r\n        this.state.classRoomChatWidth\r\n    );\r\n  };\r\n\r\n  toggleClassRoomChat = () => {\r\n    if (this.state.classRoomChatWidth === 0) {\r\n      this.setMountedState({\r\n        classRoomChatWidth: 300,\r\n      });\r\n    } else {\r\n      this.setMountedState({\r\n        classRoomChatWidth: this.state.classRoomChatWidth > 0 ? 0 : 300,\r\n      });\r\n    }\r\n    this.updateDimensions();\r\n    this.props.spinloader.setRightWidth(\r\n      this.state.sideBarWidth +\r\n        this.state.verticalToolBarWidth +\r\n        this.state.classRoomChatWidth\r\n    );\r\n  };\r\n\r\n  mouseWheelEvent = (e) => {\r\n    if (e.ctrlKey) {\r\n      this.setMountedState({\r\n        opacity: Math.min(1, Math.max(0, this.state.opacity + e.deltaY / 1000)),\r\n      });\r\n    }\r\n    if (\r\n      typeof this.tools[this.state.activeTool] !== \"undefined\" &&\r\n      this.tools[this.state.activeTool].mouseWheelEvent\r\n    )\r\n      this.tools[this.state.activeTool].mouseWheelEvent(e);\r\n  };\r\n\r\n  showGrid = () => {\r\n    // check if show tile name in rois --> only if project contains tiles tool\r\n    return this.state.project\r\n      ? this.checkToolInConfig(\"TilesTool\")\r\n        ? true\r\n        : false\r\n      : false;\r\n  };\r\n\r\n  resizeSideBar = (deltaX, resizeEnd) => {\r\n    let newSideBarWidth = this.state.sideBarWidth + deltaX;\r\n    if (\r\n      newSideBarWidth > this.state.minSideBarWidth &&\r\n      window.innerWidth - newSideBarWidth > this.state.minRendererWidth\r\n    ) {\r\n      this.setMountedState({ sideBarWidth: newSideBarWidth });\r\n      this.props.persistentStorage.save(\"sideBarWidth\", newSideBarWidth);\r\n    }\r\n    if (resizeEnd) {\r\n      this.updateDimensions();\r\n    }\r\n  };\r\n\r\n  resizeTimeLine = (deltaY, resizeEnd) => {\r\n    let newTimeLineHeight = this.state.timeLineHeight + deltaY;\r\n    if (\r\n      newTimeLineHeight > this.state.minTimeLineHeight &&\r\n      window.innerHeight - newTimeLineHeight - 64 > this.state.minCanvasHeight\r\n    ) {\r\n      this.setMountedState({ timeLineHeight: newTimeLineHeight });\r\n      this.props.persistentStorage.save(\"timeLineHeight\", newTimeLineHeight);\r\n    }\r\n    if (resizeEnd) {\r\n      this.updateDimensions();\r\n    }\r\n  };\r\n\r\n  updateToolBarWidth = (newToolBarWidth, galleryView) => {\r\n    if (this.state.verticalToolBarWidth !== newToolBarWidth) {\r\n      this.setMountedState({\r\n        verticalToolBarWidth: newToolBarWidth,\r\n      });\r\n      this.updateDimensions();\r\n    } else if (galleryView && this.state.verticalToolBarWidth !== 45) {\r\n      this.setMountedState({\r\n        verticalToolBarWidth: 45,\r\n      });\r\n      this.updateDimensions();\r\n    }\r\n  };\r\n\r\n  isElementVisible = (el) => {\r\n    // check if element was visible in previous use of project\r\n    // check saved value of element\r\n    let visible = this.props.persistentStorage.load(el);\r\n\r\n    // if undefined make element visible\r\n    if (typeof visible === \"undefined\") {\r\n      return el === \"showResultTable\" || el === \"showZoomBar\" ? false : true;\r\n    } else {\r\n      return visible;\r\n    }\r\n  };\r\n\r\n  setSideBarWidth = () => {\r\n    // set sideBarWidth depending on project module\r\n    // get saved SideBarWith from local storage\r\n    let sideBarWidthObject = this.props.persistentStorage.load(\"sideBarWidth\");\r\n    let sideBarWidthFromConfig =\r\n      this.state.viewerConfig.project.projectStringProperties[\"SideBarWidth\"];\r\n    let sideBarWidth;\r\n    // check if special project module\r\n    if (this.resultTabActive()) {\r\n      if (this.state && this.state.verticalToolBarWidth) {\r\n        sideBarWidth =\r\n          window.innerWidth - this.state.verticalToolBarWidth - 5 - 900; // subtract verticalToolBar, Padding and Renderer\r\n      } else {\r\n        sideBarWidth = window.innerWidth - 45 - 5 - 900; // subtract verticalToolBar, Padding and Renderer\r\n      }\r\n    } else {\r\n      if (sideBarWidthObject) {\r\n        // if sideBarWidth was saved to persistentStorage\r\n        sideBarWidth = sideBarWidthObject;\r\n      } else {\r\n        // check if sideBarWidth is set in config --> if not set default value 455\r\n        sideBarWidth =\r\n          sideBarWidthFromConfig && sideBarWidthFromConfig !== \"\"\r\n            ? parseInt(sideBarWidthFromConfig, 10)\r\n            : 455;\r\n      }\r\n    }\r\n    this.setMountedState({ sideBarWidth });\r\n    this.updateDimensions();\r\n  };\r\n\r\n  getProjectLabel = () => {\r\n    if (this.state && this.state.viewerConfig) {\r\n      return this.state.viewerConfig.project.label;\r\n    }\r\n  };\r\n\r\n  saveChainStatus = () => {\r\n    this.props.persistentStorage.save(\"chainList\", this.chainList);\r\n    this.props.persistentStorage.save(\r\n      \"chainListFileIds\",\r\n      this.chainListFileIds\r\n    );\r\n  };\r\n\r\n  onSelectFileSplitscreen = (fileId) => {\r\n    //get all ome and histoconfig prepared\r\n    let { splitscreenFileIds } = this.state;\r\n    if (splitscreenFileIds.length < 9) {\r\n      this.addFileToFullscreen(fileId, 0);\r\n      splitscreenFileIds.push(fileId);\r\n      this.props.persistentStorage.save(\"ActiveFileId\", fileId);\r\n      this.props.persistentStorage.save(\r\n        \"SplitscreenFileIds\",\r\n        splitscreenFileIds\r\n      );\r\n      this.openFile(fileId, this.props.id, true);\r\n      this.setMountedState({\r\n        splitscreenFileIds,\r\n        activeFileId: fileId,\r\n      });\r\n      this.updateDimensions();\r\n    } else {\r\n      window.showErrorSnackbar(\r\n        \"A maximum of 9 images within the splitscreen is allowed\"\r\n      );\r\n    }\r\n  };\r\n\r\n  onSwitchFileSplitscreen = (newFileId) => {\r\n    let { activeFileId, splitscreenFileIds } = this.state;\r\n\r\n    let rendererRef = this.rendererdict[activeFileId];\r\n    delete this.rendererdict[activeFileId];\r\n    this.rendererdict[newFileId] = rendererRef;\r\n\r\n    let index = splitscreenFileIds.indexOf(activeFileId);\r\n    splitscreenFileIds[index] = newFileId;\r\n    activeFileId = newFileId;\r\n    this.openFile(activeFileId, this.props.id, true);\r\n    this.props.persistentStorage.save(\"ActiveFileId\", activeFileId);\r\n    this.props.persistentStorage.save(\"SplitscreenFileIds\", splitscreenFileIds);\r\n\r\n    this.chainList[index] = false;\r\n    delete this.chainListFileIds[index];\r\n    this.saveChainStatus();\r\n\r\n    this.setMountedState({\r\n      splitscreenFileIds,\r\n      activeFileId,\r\n    });\r\n  };\r\n\r\n  onExcludeSplitscreen = (index, e) => {\r\n    let { splitscreenFileIds, activeFileId } = this.state;\r\n\r\n    if (activeFileId === splitscreenFileIds[index]) {\r\n      splitscreenFileIds.splice(index, 1);\r\n      activeFileId = splitscreenFileIds[Math.max(index - 1, 0)];\r\n    } else {\r\n      splitscreenFileIds.splice(index, 1);\r\n    }\r\n    this.props.persistentStorage.save(\"ActiveFileId\", activeFileId);\r\n    this.props.persistentStorage.save(\"SplitscreenFileIds\", splitscreenFileIds);\r\n    this.setMountedState({\r\n      splitscreenFileIds,\r\n      activeFileId,\r\n    });\r\n\r\n    this.chainList[index] = false;\r\n    delete this.chainListFileIds[index];\r\n    this.saveChainStatus();\r\n    this.updateDimensions();\r\n    e.stopPropagation();\r\n    return false;\r\n  };\r\n\r\n  onChainSplitscreen = (index, currentFileId, e) => {\r\n    if (!this.chainList[index]) {\r\n      this.chainList[index] = true;\r\n      this.chainListFileIds[index] = currentFileId;\r\n      this.saveChainStatus();\r\n    } else if (this.chainList[index]) {\r\n      this.chainList[index] = false;\r\n      delete this.chainListFileIds[index];\r\n      this.saveChainStatus();\r\n    }\r\n    if (e) {\r\n      e.stopPropagation();\r\n    }\r\n  };\r\n\r\n  onChangeChain = (bool, index, fileId) => {\r\n    this.chainList[index] = bool;\r\n    this.chainListFileIds[index] = fileId;\r\n    if (!bool) {\r\n      delete this.chainListFileIds[index];\r\n    }\r\n    this.saveChainStatus();\r\n  };\r\n\r\n  onDropFile = (event) => {\r\n    event.preventDefault();\r\n    let id = event.dataTransfer.getData(\"Text\");\r\n    for (let i = 0; i < this.state.project.files.length; i++) {\r\n      if (this.state.project.files[i].id === id) {\r\n        this.onSelectFileSplitscreen(id);\r\n      }\r\n    }\r\n    this.setMountedState({ showSplitscreenDropzone: false });\r\n  };\r\n\r\n  setActiveView = (index) => {\r\n    let { splitscreenFileIds, activeFileId } = this.state;\r\n    if (activeFileId !== splitscreenFileIds[index]) {\r\n      activeFileId = splitscreenFileIds[index];\r\n    }\r\n    this.addFileToFullscreen(activeFileId, 0);\r\n    this.props.persistentStorage.save(\"ActiveFileId\", activeFileId);\r\n    this.setMountedState({\r\n      activeFileId,\r\n    });\r\n  };\r\n\r\n  onToggleFullscreen = () => {\r\n    if (this.state.showFullscreen) {\r\n      this.setMountedState({ showOverlay: false, showWindowTool: false });\r\n      this.setOpacityChangeFullscreen(0, 100);\r\n      this.setOpacityChangeFullscreen(1, 0);\r\n    }\r\n    this.setMountedState({ showFullscreen: !this.state.showFullscreen });\r\n    this.updateDimensions();\r\n  };\r\n\r\n  setOpacityChangeFullscreen = (id, value) => {\r\n    if (id === 0) {\r\n      this.setMountedState({ firstFullscreenOpacity: value });\r\n    } else {\r\n      this.setMountedState({ secFullscreenOpacity: value });\r\n    }\r\n  };\r\n\r\n  addFileToFullscreen = (fileId, idx) => {\r\n    let { fullscreenFileIds } = this.state;\r\n    if (\r\n      (idx === 0 && fullscreenFileIds[1] === fileId) ||\r\n      (idx === 1 && fullscreenFileIds[0] === fileId)\r\n    ) {\r\n      let firstRef = this.rendererdict[\"Full\" + fullscreenFileIds[0]];\r\n      let secRef = this.rendererdict[\"Full\" + fullscreenFileIds[1]];\r\n      let firstId = fullscreenFileIds[0];\r\n      let secId = fullscreenFileIds[1];\r\n      this.rendererdict[\"Full\" + fullscreenFileIds[1]] = firstRef;\r\n      this.rendererdict[\"Full\" + fullscreenFileIds[0]] = secRef;\r\n      fullscreenFileIds[0] = secId;\r\n      fullscreenFileIds[1] = firstId;\r\n    } else if (fullscreenFileIds[idx] && fullscreenFileIds[idx] !== fileId) {\r\n      let rendererRef = this.rendererdict[\"Full\" + fullscreenFileIds[idx]];\r\n      delete this.rendererdict[\"Full\" + fullscreenFileIds[idx]];\r\n      this.rendererdict[\"Full\" + fileId] = rendererRef;\r\n      fullscreenFileIds[idx] = fileId;\r\n    }\r\n    if (fullscreenFileIds.length === 0 || fullscreenFileIds.length === 1) {\r\n      fullscreenFileIds[idx] = fileId;\r\n    }\r\n\r\n    if (this.sliderRef) {\r\n      this.sliderRef.setState({ init: false });\r\n    }\r\n    this.setMountedState({\r\n      fullscreenFileIds,\r\n    });\r\n  };\r\n\r\n  setActiveFileFullscreen = (fileId) => {\r\n    this.setMountedState({ activeFileId: fileId });\r\n  };\r\n\r\n  onToggleFullscreenChain = () => {\r\n    this.setMountedState({ fullscreenChain: !this.state.fullscreenChain });\r\n  };\r\n\r\n  onToggleOverlay = () => {\r\n    this.setMountedState({\r\n      showOverlay: !this.state.showOverlay,\r\n      showWindowTool: false,\r\n    });\r\n  };\r\n\r\n  onToggleWindowTool = () => {\r\n    this.setMountedState({ showWindowTool: !this.state.showWindowTool });\r\n  };\r\n\r\n  toggleShowFirstAccordion = () => {\r\n    this.setMountedState({\r\n      showFirstAccordion: !this.state.showFirstAccordion,\r\n    });\r\n  };\r\n\r\n  /**\r\n   * Saves those structures to which AI results will be saved to.\r\n   * @param {object} obj Structure information including the model used.\r\n   * @param {string} task What to do with a given structure. Supports \"add\" and \"remove_all\".\r\n   */\r\n  setAiUsedStructures = (obj, task) => {\r\n    switch (task) {\r\n      // Add a strucuture with an assigend model\r\n      case \"add\":\r\n        {\r\n          let aiStructures = this.state.aiUsedStructures;\r\n          if (!aiStructures.filter((e) => e.id === obj.id).length > 0) {\r\n            aiStructures.push(obj);\r\n          }\r\n          this.setMountedState({ aiUsedStructures: aiStructures });\r\n        }\r\n        break;\r\n\r\n      // Remove everything\r\n      case \"remove_all\":\r\n        this.setMountedState({ aiUsedStructures: [] });\r\n        break;\r\n\r\n      default:\r\n        console.warn(`Invalid task provided to setAiUsedStructures(): ${task}`);\r\n    }\r\n  };\r\n\r\n  render() {\r\n    const { classes } = this.props;\r\n    const {\r\n      verticalToolBarWidth,\r\n      sideBarWidth,\r\n      classRoomChatWidth,\r\n      activeTool,\r\n      project,\r\n      containerKey,\r\n      // view layout flags\r\n      showGallery,\r\n      galleryType,\r\n      show3DViewer,\r\n      showPointCloud,\r\n      showTilesGallery,\r\n      showTimeBar,\r\n      displayTimeBar,\r\n      showZStackBar,\r\n      displayZStackBar,\r\n      drawLayer,\r\n      commentLayers,\r\n      landmarkLayers,\r\n      opacity,\r\n      importProgress,\r\n      splitscreenFileIds,\r\n      showSplitscreenDropzone,\r\n      activeFileId,\r\n      omeDict,\r\n      minZ,\r\n      maxZ,\r\n      fullscreenFileIds,\r\n      histogramConfig,\r\n      showFullscreen,\r\n      showOverlay,\r\n      showWindowTool,\r\n    } = this.state;\r\n\r\n    const {\r\n      structures,\r\n      roiLayers,\r\n      //fileRoiLayers,\r\n      selectedLayer,\r\n    } = this.props.projectContext;\r\n\r\n    return (\r\n      <Grid container className={classes.root} key={containerKey}>\r\n        <FindFilesDialog\r\n          ref={(c) => (this.FindMissingFiles = c)}\r\n          projectActionMode={ProjectActionMode.Update}\r\n        />\r\n        <Grid\r\n          container\r\n          className={classes.mainContainer}\r\n          style={{\r\n            position: \"relative\",\r\n            height: \"100%\",\r\n            flexBasis:\r\n              \"calc(100% - \" +\r\n              (verticalToolBarWidth + sideBarWidth + classRoomChatWidth) +\r\n              \"px)\",\r\n            overflowY:\r\n              showGallery || showTilesGallery\r\n                ? this.state.scrollGallery\r\n                : \"inherit\",\r\n            overflowX: \"inherit\",\r\n          }}\r\n          onWheel={this.mouseWheelEvent}\r\n          onDragEnter={\r\n            this.state &&\r\n            (() => {\r\n              if (\r\n                this.state.viewerConfig.project.projectProperties[\r\n                  \"EnableSplitscreen\"\r\n                ]\r\n              )\r\n                this.setMountedState({ showSplitscreenDropzone: true });\r\n            })\r\n          }\r\n          onDragLeave={() => {\r\n            this.setMountedState({ showSplitscreenDropzone: false });\r\n          }}\r\n          onDragOver={(e) => e.preventDefault()}\r\n          onDrop={(e) => {\r\n            if (\r\n              this.state.viewerConfig.project.projectProperties[\r\n                \"EnableSplitscreen\"\r\n              ]\r\n            )\r\n              this.onDropFile(e);\r\n          }}\r\n        >\r\n          {showSplitscreenDropzone && (\r\n            <div className={classes.dropfieldRoot}>\r\n              Drop file here for split screen.\r\n            </div>\r\n          )}\r\n          {!showGallery &&\r\n            !showTilesGallery &&\r\n            !showFullscreen &&\r\n            splitscreenFileIds.map((currentFileId, index) => (\r\n              <Grid\r\n                item\r\n                key={index}\r\n                xs={\r\n                  splitscreenFileIds.length === 4\r\n                    ? 6\r\n                    : splitscreenFileIds.length > 2\r\n                    ? 4\r\n                    : splitscreenFileIds.length > 1\r\n                    ? 6\r\n                    : 12\r\n                }\r\n                style={{\r\n                  border: splitscreenFileIds.length > 1 && \"1px solid\",\r\n                  position: \"relative\",\r\n                  background: \"#EBEBEB\",\r\n                  height:\r\n                    splitscreenFileIds.length === 4\r\n                      ? \"50%\"\r\n                      : splitscreenFileIds.length > 6\r\n                      ? \"33.333333333%\"\r\n                      : splitscreenFileIds.length > 3\r\n                      ? \"50%\"\r\n                      : \"100%\",\r\n                  zIndex: currentFileId === activeFileId ? \"0\" : \"1\",\r\n                }}\r\n                onClick={() => this.setActiveView(index, currentFileId)}\r\n              >\r\n                <Dialog\r\n                  open={importProgress > -1 && importProgress < 100}\r\n                  hideBackdrop\r\n                  style={{ pointerEvents: \"none\" }}\r\n                >\r\n                  <DialogTitle>\r\n                    Importing File: <br />\r\n                    &quot;\r\n                    {this.state.project &&\r\n                      this.state.project.files.find(\r\n                        (file) => file.id === this.state.activeFileId\r\n                      ).fileName}\r\n                    &quot;\r\n                  </DialogTitle>\r\n                  <LinearProgress\r\n                    variant=\"determinate\"\r\n                    value={importProgress}\r\n                    style={{ height: 10 }}\r\n                  />\r\n                </Dialog>\r\n                {/* ADD 3D-Viewer-Component!!! */}\r\n                {show3DViewer &&\r\n                  !showGallery &&\r\n                  !showTilesGallery &&\r\n                  omeDict[currentFileId] &&\r\n                  this.zoomObjectDict &&\r\n                  histogramConfig[currentFileId] && (\r\n                    <React.Fragment>\r\n                      {currentFileId === activeFileId &&\r\n                        splitscreenFileIds.length > 1 && (\r\n                          <div className={classes.activeIndicatorBorder} />\r\n                        )}\r\n                      {splitscreenFileIds.length > 1 && (\r\n                        <Tooltip disableInteractive title={\"Exclude Scene\"}>\r\n                          <IconButton\r\n                            className={classes.excludeButton}\r\n                            style={{ color: \"#666\" }}\r\n                            size=\"small\"\r\n                            onClick={(e) => this.onExcludeSplitscreen(index, e)}\r\n                          >\r\n                            <RemoveCircleIcon />\r\n                          </IconButton>\r\n                        </Tooltip>\r\n                      )}\r\n                      {splitscreenFileIds.length > 1 && (\r\n                        <Tooltip disableInteractive title={\"Chain Scene\"}>\r\n                          <IconButton\r\n                            className={classes.attachButton}\r\n                            style={{ color: \"#666\" }}\r\n                            size=\"small\"\r\n                            onClick={(e) =>\r\n                              this.onChainSplitscreen(index, currentFileId, e)\r\n                            }\r\n                          >\r\n                            {this.chainList[index] ? (\r\n                              <LinkIcon style={{ color: \"#0673C1\" }} />\r\n                            ) : (\r\n                              <LinkOffIcon />\r\n                            )}\r\n                          </IconButton>\r\n                        </Tooltip>\r\n                      )}\r\n                      <Viewer3D\r\n                        fileId={currentFileId}\r\n                        ome={omeDict[currentFileId]}\r\n                        projectId={this.props.id}\r\n                        minZ={minZ}\r\n                        maxZ={maxZ}\r\n                        showPointCloud={showPointCloud}\r\n                      />\r\n                    </React.Fragment>\r\n                  )}\r\n                {!showGallery &&\r\n                  !show3DViewer &&\r\n                  !showTilesGallery &&\r\n                  omeDict[currentFileId] &&\r\n                  this.zoomObjectDict &&\r\n                  histogramConfig[currentFileId] && (\r\n                    <React.Fragment>\r\n                      {currentFileId === activeFileId &&\r\n                        splitscreenFileIds.length > 1 && (\r\n                          <div className={classes.activeIndicatorBorder} />\r\n                        )}\r\n                      {splitscreenFileIds.length > 1 && (\r\n                        <Tooltip disableInteractive title={\"Exclude Scene\"}>\r\n                          <IconButton\r\n                            className={classes.excludeButton}\r\n                            style={{ color: \"#666\" }}\r\n                            size=\"small\"\r\n                            onClick={(e) => this.onExcludeSplitscreen(index, e)}\r\n                          >\r\n                            <RemoveCircleIcon />\r\n                          </IconButton>\r\n                        </Tooltip>\r\n                      )}\r\n                      {splitscreenFileIds.length > 1 && (\r\n                        <Tooltip disableInteractive title={\"Chain Scene\"}>\r\n                          <IconButton\r\n                            className={classes.attachButton}\r\n                            size=\"small\"\r\n                            onClick={(e) =>\r\n                              this.onChainSplitscreen(index, currentFileId, e)\r\n                            }\r\n                          >\r\n                            {this.chainList[index] ? (\r\n                              <LinkIcon style={{ color: \"#0673C1\" }} />\r\n                            ) : (\r\n                              <LinkOffIcon />\r\n                            )}\r\n                          </IconButton>\r\n                        </Tooltip>\r\n                      )}\r\n                      <Renderer\r\n                        dimensionsUpdated={this.state.dimensionsUpdated}\r\n                        rightSpace={\r\n                          sideBarWidth +\r\n                          verticalToolBarWidth +\r\n                          classRoomChatWidth\r\n                        }\r\n                        splitscreenCount={splitscreenFileIds.length}\r\n                        isChained={this.chainList[index]}\r\n                        chainListFileIds={this.chainListFileIds}\r\n                        splitscreenFileIds={splitscreenFileIds}\r\n                        isActive={currentFileId === activeFileId}\r\n                        canvasId={\"mainCanvas\" + index}\r\n                        componentRef={(c) =>\r\n                          (this.rendererdict[currentFileId] = c)\r\n                        }\r\n                        rendererDict={this.rendererdict}\r\n                        projectConfig={this.state.projectConfig}\r\n                        ome={omeDict[currentFileId]}\r\n                        histogramConfig={histogramConfig[currentFileId]}\r\n                        rois={this.state.rois}\r\n                        fileId={currentFileId}\r\n                        activeFileId={activeFileId}\r\n                        projectId={this.props.id}\r\n                        activeTool={\r\n                          currentFileId === activeFileId\r\n                            ? activeTool\r\n                            : Tools.NONE\r\n                        }\r\n                        onChangeROIs={(e) => this.setMountedState({ rois: e })}\r\n                        // toggle different dialogs\r\n                        showGallery={showGallery}\r\n                        showTilesGallery={showTilesGallery}\r\n                        displayTimeBar={displayTimeBar}\r\n                        displayZStackBar={displayZStackBar}\r\n                        showZStackBar={showZStackBar}\r\n                        showTimeBar={showTimeBar}\r\n                        tools={this.tools}\r\n                        structures={structures}\r\n                        roiLayers={roiLayers[currentFileId]}\r\n                        allRoiLayers={roiLayers}\r\n                        drawLayer={\r\n                          currentFileId === activeFileId\r\n                            ? drawLayer\r\n                            : {\r\n                                regionRois: [],\r\n                                inverted: false,\r\n                                clear: false,\r\n                              }\r\n                        }\r\n                        commentLayer={commentLayers[currentFileId]}\r\n                        landmarkLayer={landmarkLayers[currentFileId]}\r\n                        selectedLayer={selectedLayer}\r\n                        opacity={opacity}\r\n                        changeHiConfig={this.setHistogramConfig}\r\n                        updateProject={this.updateProject}\r\n                        tzoomROI1={this.resetRoiZoomInDict}\r\n                        zoomROI={\r\n                          this.zoomObjectDict[currentFileId]\r\n                            ? this.zoomObjectDict[currentFileId].zoomRoi\r\n                            : false\r\n                        }\r\n                        zoomLeft={\r\n                          this.zoomObjectDict[currentFileId]\r\n                            ? this.zoomObjectDict[currentFileId].zoomLeft\r\n                            : 0\r\n                        }\r\n                        zoomRight={\r\n                          this.zoomObjectDict[currentFileId]\r\n                            ? this.zoomObjectDict[currentFileId].zoomRight\r\n                            : 0\r\n                        }\r\n                        zoomTop={\r\n                          this.zoomObjectDict[currentFileId]\r\n                            ? this.zoomObjectDict[currentFileId].zoomTop\r\n                            : 0\r\n                        }\r\n                        zoomBottom={\r\n                          this.zoomObjectDict[currentFileId]\r\n                            ? this.zoomObjectDict[currentFileId].zoomBottom\r\n                            : 0\r\n                        }\r\n                        zoomROI1={this.resetRoiZoom}\r\n                        setSelectedRoi={this.setSelectedRoi}\r\n                        setAIObjects={this.setAIObjects}\r\n                        selRoi={this.state.selRoi}\r\n                        showGridLabels={this.showGrid()}\r\n                        viewerConfig={this.state.viewerConfig}\r\n                        activeTab={this.props.projectContext.activeTab}\r\n                        onChangeTool={this.onChangeTool}\r\n                        setChangingFile={\r\n                          this.props.projectContext.setChangingFile\r\n                        }\r\n                        changingFile={this.props.projectContext.changingFile}\r\n                        project={project}\r\n                        updateGlobalZ={this.updateGlobalZ}\r\n                        updateGlobalT={this.updateGlobalT}\r\n                        timeLineHeight={this.state.timeLineHeight}\r\n                        resizeTimeLine={this.resizeTimeLine}\r\n                        loadedAnnotationsCounter={\r\n                          this.state.loadedAnnotationsCounter\r\n                        }\r\n                        frameArrayDict={this.state.frameArrayDict}\r\n                        projectContext={this.props.projectContext}\r\n                        setSelectedLayer={this.setSelectedLayer}\r\n                        showMarks={activeTool === \"landmark\" ? true : false}\r\n                        landmarkLayers={landmarkLayers}\r\n                        showFullscreen={showFullscreen}\r\n                        splitscreenIdx={index}\r\n                        onChangeChain={this.onChangeChain}\r\n                        fsChain={this.onToggleFullscreenChain}\r\n                        resultTabActive={() => this.resultTabActive()}\r\n                        onSelectFile={this.onSelectFile}\r\n                        openNextFile={this.openNextFile}\r\n                        openPrevFile={this.openPrevFile}\r\n                        updateVisibleROIDebounced={\r\n                          this.updateVisibleROIDebounced\r\n                        }\r\n                      />\r\n                    </React.Fragment>\r\n                  )}\r\n              </Grid>\r\n            ))}\r\n          {!showGallery &&\r\n            !showTilesGallery &&\r\n            omeDict[activeFileId] &&\r\n            this.zoomObjectDict &&\r\n            histogramConfig[activeFileId] &&\r\n            showFullscreen &&\r\n            fullscreenFileIds.map((currentFileId, index) => (\r\n              <Grid\r\n                item\r\n                key={\"f\" + index}\r\n                style={{\r\n                  position: \"absolute\",\r\n                  background: \"#EBEBEB\",\r\n                  height: \"100%\",\r\n                  width: \"100%\",\r\n                  opacity:\r\n                    index === 0\r\n                      ? this.state.firstFullscreenOpacity + \"%\"\r\n                      : this.state.secFullscreenOpacity + \"%\",\r\n                  pointerEvents:\r\n                    currentFileId === activeFileId ? \"auto\" : \"none\",\r\n                }}\r\n              >\r\n                <Renderer\r\n                  dimensionsUpdated={this.state.dimensionsUpdated}\r\n                  rightSpace={\r\n                    sideBarWidth + verticalToolBarWidth + classRoomChatWidth\r\n                  }\r\n                  splitscreenCount={splitscreenFileIds.length}\r\n                  isChained={this.state.fullscreenChain}\r\n                  chainListFileIds={this.chainListFileIds}\r\n                  splitscreenFileIds={fullscreenFileIds}\r\n                  isActive={currentFileId === activeFileId}\r\n                  canvasId={\"FullscreenCanvas\" + index}\r\n                  componentRef={(c) =>\r\n                    (this.rendererdict[\"Full\" + currentFileId] = c)\r\n                  }\r\n                  rendererDict={this.rendererdict}\r\n                  projectConfig={this.state.projectConfig}\r\n                  ome={omeDict[currentFileId]}\r\n                  histogramConfig={histogramConfig[currentFileId]}\r\n                  rois={this.state.rois}\r\n                  fileId={currentFileId}\r\n                  activeFileId={activeFileId}\r\n                  projectId={this.props.id}\r\n                  activeTool={\r\n                    currentFileId === activeFileId ? activeTool : Tools.NONE\r\n                  }\r\n                  onChangeROIs={(e) => this.setMountedState({ rois: e })}\r\n                  // toggle different dialogs\r\n                  showGallery={showGallery}\r\n                  showTilesGallery={showTilesGallery}\r\n                  displayTimeBar={displayTimeBar}\r\n                  displayZStackBar={displayZStackBar}\r\n                  showZStackBar={showZStackBar}\r\n                  showTimeBar={showTimeBar}\r\n                  tools={this.tools}\r\n                  structures={structures}\r\n                  roiLayers={roiLayers[currentFileId]}\r\n                  allRoiLayers={roiLayers}\r\n                  drawLayer={\r\n                    currentFileId === activeFileId\r\n                      ? drawLayer\r\n                      : {\r\n                          regionRois: [],\r\n                          inverted: false,\r\n                          clear: false,\r\n                        }\r\n                  }\r\n                  commentLayer={commentLayers[currentFileId]}\r\n                  landmarkLayer={landmarkLayers[currentFileId]}\r\n                  selectedLayer={selectedLayer}\r\n                  opacity={opacity}\r\n                  changeHiConfig={this.setHistogramConfig}\r\n                  updateProject={this.updateProject}\r\n                  tzoomROI1={this.resetRoiZoomInDict}\r\n                  zoomROI={\r\n                    this.zoomObjectDict[currentFileId]\r\n                      ? this.zoomObjectDict[currentFileId].zoomRoi\r\n                      : false\r\n                  }\r\n                  zoomLeft={\r\n                    this.zoomObjectDict[currentFileId]\r\n                      ? this.zoomObjectDict[currentFileId].zoomLeft\r\n                      : 0\r\n                  }\r\n                  zoomRight={\r\n                    this.zoomObjectDict[currentFileId]\r\n                      ? this.zoomObjectDict[currentFileId].zoomRight\r\n                      : 0\r\n                  }\r\n                  zoomTop={\r\n                    this.zoomObjectDict[currentFileId]\r\n                      ? this.zoomObjectDict[currentFileId].zoomTop\r\n                      : 0\r\n                  }\r\n                  zoomBottom={\r\n                    this.zoomObjectDict[currentFileId]\r\n                      ? this.zoomObjectDict[currentFileId].zoomBottom\r\n                      : 0\r\n                  }\r\n                  zoomROI1={this.resetRoiZoom}\r\n                  setSelectedRoi={this.setSelectedRoi}\r\n                  setAIObjects={this.setAIObjects}\r\n                  selRoi={this.state.selRoi}\r\n                  showGridLabels={this.showGrid()}\r\n                  viewerConfig={this.state.viewerConfig}\r\n                  activeTab={this.props.projectContext.activeTab}\r\n                  onChangeTool={this.onChangeTool}\r\n                  setChangingFile={this.props.projectContext.setChangingFile}\r\n                  changingFile={this.props.projectContext.changingFile}\r\n                  project={project}\r\n                  updateGlobalZ={this.updateGlobalZ}\r\n                  updateGlobalT={this.updateGlobalT}\r\n                  timeLineHeight={this.state.timeLineHeight}\r\n                  resizeTimeLine={this.resizeTimeLine}\r\n                  loadedAnnotationsCounter={this.state.loadedAnnotationsCounter}\r\n                  frameArrayDict={this.state.frameArrayDict}\r\n                  showMarks={activeTool === \"landmark\" ? true : false}\r\n                  landmarkLayers={landmarkLayers}\r\n                  showFullscreen={showFullscreen}\r\n                  fullscreenIdx={index}\r\n                  onChangeChain={this.onChangeChain}\r\n                  fsChain={this.onToggleFullscreenChain}\r\n                  showWindowTool={showWindowTool}\r\n                  windowToolRef={this.windowToolRef}\r\n                  resultTabActive={() => this.resultTabActive()}\r\n                  updateVisibleROIDebounced={this.updateVisibleROIDebounced}\r\n                />\r\n              </Grid>\r\n            ))}\r\n          {!showGallery &&\r\n            !showTilesGallery &&\r\n            omeDict[activeFileId] &&\r\n            this.zoomObjectDict &&\r\n            histogramConfig[activeFileId] &&\r\n            showFullscreen &&\r\n            showOverlay && (\r\n              <OverlaySlider\r\n                componentRef={(c) => (this.sliderRef = c)}\r\n                setOpacity={this.setOpacityChangeFullscreen}\r\n                activeFileId={activeFileId}\r\n                splitscreenFileIds={splitscreenFileIds}\r\n                omeDict={omeDict}\r\n                addFile={this.addFileToFullscreen}\r\n                setActive={this.setActiveFileFullscreen}\r\n                fullscreenFileIds={fullscreenFileIds}\r\n                fsChain={this.onToggleFullscreenChain}\r\n                isChained={this.state.fullscreenChain}\r\n                rendererdict={this.rendererdict}\r\n              ></OverlaySlider>\r\n            )}\r\n          {!showGallery &&\r\n            !showTilesGallery &&\r\n            omeDict[activeFileId] &&\r\n            this.zoomObjectDict &&\r\n            histogramConfig[activeFileId] &&\r\n            showFullscreen &&\r\n            showWindowTool && (\r\n              <WindowTool\r\n                componentRef={(c) => (this.windowToolRef = c)}\r\n                activeFileId={activeFileId}\r\n                rendererDict={this.rendererdict}\r\n                fullscreenFileIds={fullscreenFileIds}\r\n              ></WindowTool>\r\n            )}\r\n          {(showGallery || showTilesGallery) && histogramConfig[activeFileId] && (\r\n            <Gallery\r\n              componentRef={(c) => (this.gallery = c)}\r\n              ome={omeDict[activeFileId]}\r\n              fileId={activeFileId}\r\n              projectId={this.props.id}\r\n              structures={structures}\r\n              roiLayers={roiLayers[activeFileId]}\r\n              selectedLayer={selectedLayer}\r\n              visibleImage={this.visibleImage}\r\n              coloredImages={this.coloredImages}\r\n              histogramConfig={histogramConfig[activeFileId]}\r\n              gallery={this.createZoomObjectForRect}\r\n              activeTool={activeTool}\r\n              tools={this.tools}\r\n              visImgs={this.state.visImgs}\r\n              selectedObjects={this.selObjects}\r\n              drawLayer={drawLayer}\r\n              saveChangesGallery={this.saveChangesGallery}\r\n              applyDL={this.applyDL}\r\n              setApplyModelAfterTraining={this.setApplyModelAfterTraining}\r\n              makePredictions={this.applyModelAfterTraining}\r\n              selObjs={this.selObjs}\r\n              updateCount={this.updateCount}\r\n              alruns={this.state.alruns}\r\n              setAlruns={this.setAlruns}\r\n              graphData={this.graphData}\r\n              updateViewer={this.updateViewer}\r\n              onGallerychangePage={this.onGallerychangePage}\r\n              showZStackBar={\r\n                this.props.persistentStorage.load(\r\n                  \"showZStackBar\" + activeFileId\r\n                ) === true ||\r\n                this.props.persistentStorage.load(\r\n                  \"showZStackBar\" + activeFileId\r\n                ) === false\r\n                  ? this.props.persistentStorage.load(\r\n                      \"showZStackBar\" + activeFileId\r\n                    )\r\n                  : false\r\n              }\r\n              viewerConfig={this.state.viewerConfig}\r\n              startAutomaticTraining={this.startAutomaticTraining}\r\n              updateStructure={this.state.updateStructure}\r\n              trainingWarning={this.trainingWarning}\r\n              setFUllyAnnotated={this.setFUllyAnnotated}\r\n              setAnnotated={this.setAnnotated}\r\n              showGallery={showGallery}\r\n              galleryType={galleryType}\r\n              showTilesGallery={showTilesGallery}\r\n              project={project}\r\n              onSelectLayer={(e) => {\r\n                this.props.projectContext.setState({ selectedLayer: e });\r\n              }}\r\n              globalZ={this.state.z}\r\n              updateFileClasses={this.updateFileClasses}\r\n            />\r\n          )}\r\n        </Grid>\r\n        {omeDict[activeFileId] &&\r\n          histogramConfig[activeFileId] &&\r\n          this.rendererdict[activeFileId] && (\r\n            <VerticalToolBar\r\n              history={this.props.history}\r\n              annotationsAreReduced={this.state.annotationsAreReduced}\r\n              isImporting={importProgress > -1 && importProgress < 100}\r\n              verticalToolBarWidth={this.state.verticalToolBarWidth}\r\n              viewerConfig={this.state.viewerConfig}\r\n              structures={structures}\r\n              roiLayers={roiLayers[activeFileId]}\r\n              // tool selection\r\n              activeTool={activeTool}\r\n              onChangeTool={this.onChangeTool}\r\n              // layer selection\r\n              selectedLayer={selectedLayer}\r\n              // toggle different dialogs\r\n              showGallery={showGallery}\r\n              galleryType={galleryType}\r\n              onToggleGallery={(e) => {\r\n                this.setMountedState({\r\n                  showGallery: e,\r\n                  showTilesGallery: false,\r\n                });\r\n                if (showTilesGallery) {\r\n                  this.toggleSideBar();\r\n                }\r\n                if (showGallery) {\r\n                  this.updateDimensions();\r\n                  if (this.resultTabActive()) {\r\n                    this.onChangeTool(\"pointcountingtile\");\r\n                  }\r\n                }\r\n                if (this.state.project.type.includes(\"HistoPointCounting\")) {\r\n                  // make parent to selectedLayer again\r\n                  let parentIndex = selectedLayer;\r\n                  if (structures[selectedLayer].classificationSubtype) {\r\n                    parentIndex = this.getParentIndex(\r\n                      structures[selectedLayer].parentId\r\n                    );\r\n                  }\r\n                  this.props.projectContext.setState({\r\n                    selectedLayer: parentIndex,\r\n                  });\r\n                  // hide sidebar\r\n                  this.toggleSideBar();\r\n                }\r\n              }}\r\n              changeToSelectedFile={this.changeToSelectedFile}\r\n              showTilesGallery={showTilesGallery}\r\n              // show 3D Viewer\r\n              show3DViewer={show3DViewer}\r\n              onToggle3DViewer={(e) => {\r\n                this.toggleSideBar();\r\n                this.saveFunction(null, () => {\r\n                  console.log(\"SaveFunction Callback\");\r\n                  this.setMountedState({\r\n                    show3DViewer: e,\r\n                    showGallery: false,\r\n                    showTilesGallery: false,\r\n                  });\r\n                });\r\n              }}\r\n              showPointCloud={showPointCloud}\r\n              onToggleMeshView={(e) => {\r\n                this.setMountedState({ showPointCloud: e });\r\n              }}\r\n              onToggleTilesGallery={(e) => {\r\n                this.setMountedState({\r\n                  showTilesGallery: e,\r\n                  showGallery: false,\r\n                });\r\n                this.toggleSideBar();\r\n              }}\r\n              onToggleTimeBar={() => {\r\n                this.setMountedState({ showTimeBar: !this.state.showTimeBar });\r\n                this.updateDimensions();\r\n              }}\r\n              onSaveScreenshot={this.onSaveScreenshot}\r\n              onZoomOriginal={this.onZoomOriginal}\r\n              onZoomOneToN={this.onZoomOneToN}\r\n              onZoomFit={this.onZoomFit}\r\n              // save project\r\n              onSave={this.onSaveClick}\r\n              //save gallery images\r\n              onSaveGallery={this.onSaveGalleryClick}\r\n              alruns={this.state.alruns}\r\n              onZoomDelta={this.onZoomDelta}\r\n              applyDL={this.applyDL}\r\n              tools={this.tools}\r\n              fileId={activeFileId}\r\n              projectId={this.props.id}\r\n              saveChangesGallery={this.saveChangesGallery}\r\n              project={this.state.project}\r\n              setGalleryTool={this.setGalleryTool}\r\n              setAlruns={this.setAlruns}\r\n              trainingWarning={this.trainingWarning}\r\n              onToggleSideBar={this.toggleSideBar}\r\n              resizeSideBar={this.resizeSideBar}\r\n              updateToolBarWidth={this.updateToolBarWidth}\r\n              ome={omeDict[activeFileId]}\r\n              activeTab={this.props.projectContext.activeTab}\r\n              splitscreenCount={splitscreenFileIds.length}\r\n              displayTimeBar={displayTimeBar}\r\n              displayZStackBar={displayZStackBar}\r\n              rendererRef={\r\n                showFullscreen\r\n                  ? this.rendererdict[\"Full\" + activeFileId]\r\n                  : this.rendererdict[activeFileId]\r\n              }\r\n              onToggleFullscreen={this.onToggleFullscreen}\r\n              showFullscreen={showFullscreen}\r\n              onToggleOverlay={this.onToggleOverlay}\r\n              showOverlay={showOverlay}\r\n              onToggleWindowTool={this.onToggleWindowTool}\r\n              showWindowTool={showWindowTool}\r\n              aiUsedStructures={this.state.aiUsedStructures}\r\n            />\r\n          )}\r\n        {omeDict[activeFileId] && histogramConfig[activeFileId] && (\r\n          <SideBar\r\n            componentRef={(c) => (this.sidebar = c)}\r\n            key={activeFileId}\r\n            sideBarWidth={sideBarWidth}\r\n            project={project}\r\n            alterStructure={this.alterStructure}\r\n            structures={structures}\r\n            roiLayers={roiLayers[activeFileId]}\r\n            // tool selection\r\n            activeTool={activeTool}\r\n            onChangeTool={this.onChangeTool}\r\n            // layer selection\r\n            selectedLayer={selectedLayer}\r\n            // toggle different dialogs\r\n            showGallery={showGallery}\r\n            onToggleGallery={(e) => {\r\n              this.setMountedState({\r\n                showGallery: e,\r\n                showTilesGallery: false,\r\n              });\r\n              if (showTilesGallery) {\r\n                this.toggleSideBar();\r\n              }\r\n              if (showGallery) {\r\n                this.updateDimensions();\r\n                if (this.resultTabActive()) {\r\n                  this.onChangeTool(\"pointcountingtile\");\r\n                }\r\n              }\r\n              if (this.state.project.type.includes(\"HistoPointCounting\")) {\r\n                // make parent to selectedLayer again\r\n                let parentIndex = selectedLayer;\r\n                if (structures[selectedLayer].classificationSubtype) {\r\n                  parentIndex = this.getParentIndex(\r\n                    structures[selectedLayer].parentId\r\n                  );\r\n                }\r\n                this.props.projectContext.setState({\r\n                  selectedLayer: parentIndex,\r\n                });\r\n                // hide sidebar\r\n                this.toggleSideBar();\r\n              }\r\n            }}\r\n            showTilesGallery={showTilesGallery}\r\n            // show 3D Viewer\r\n            show3DViewer={show3DViewer}\r\n            onToggle3DViewer={(e) => {\r\n              this.saveFunction(null, () => {\r\n                console.log(\"SaveFunction Callback\");\r\n                this.setMountedState({\r\n                  show3DViewer: e,\r\n                  showGallery: false,\r\n                  showTilesGallery: false,\r\n                });\r\n              });\r\n            }}\r\n            showPointCloud={showPointCloud}\r\n            onToggleMeshView={(e) => {\r\n              this.setMountedState({ showPointCloud: e });\r\n            }}\r\n            onToggleTilesGallery={(e) => {\r\n              this.setMountedState({ showTilesGallery: e, showGallery: false });\r\n              this.toggleSideBar();\r\n            }}\r\n            onToggleTimeBar={() => {\r\n              this.setMountedState({ showTimeBar: !this.state.showTimeBar });\r\n              this.updateDimensions();\r\n            }}\r\n            onSaveScreenshot={this.onSaveScreenshot}\r\n            onZoomOriginal={this.onZoomOriginal}\r\n            onZoomOneToN={this.onZoomOneToN}\r\n            onZoomFit={this.onZoomFit}\r\n            // save project\r\n            onSave={this.onSaveClick}\r\n            //save gallery images\r\n            onSaveGallery={this.onSaveGalleryClick}\r\n            alruns={this.state.alruns}\r\n            onZoomDelta={this.onZoomDelta}\r\n            applyDL={this.applyDL}\r\n            tools={this.tools}\r\n            fileId={activeFileId}\r\n            projectId={this.props.id}\r\n            saveChangesGallery={this.saveChangesGallery}\r\n            setGalleryTool={this.setGalleryTool}\r\n            setAlruns={this.setAlruns}\r\n            trainingWarning={this.trainingWarning}\r\n            onToggleSideBar={this.toggleSideBar}\r\n            resizeSideBar={this.resizeSideBar}\r\n            ome={omeDict[activeFileId]}\r\n            activeTab={this.props.projectContext.activeTab}\r\n            splitscreenCount={splitscreenFileIds.length}\r\n            displayTimeBar={displayTimeBar}\r\n            displayZStackBar={displayZStackBar}\r\n            rendererRef={this.rendererdict[activeFileId]}\r\n            onToggleFullscreen={this.onToggleFullscreen}\r\n            showFullscreen={showFullscreen}\r\n            viewerConfig={this.state.viewerConfig}\r\n            splitscreenFileIds={splitscreenFileIds}\r\n            onSelectFile={this.onSelectFile}\r\n            onExcludeFilesToggle={this.onExcludeFilesToggle}\r\n            // meta data\r\n            histogramConfig={histogramConfig}\r\n            onChangeChannels={(e) => this.histogramChanged(e)}\r\n            id={this.props.id}\r\n            // roi list\r\n            rois={this.state.rois}\r\n            onCenterROI={(roi) =>\r\n              this.rendererdict[activeFileId].centerROI(roi)\r\n            }\r\n            onHoverROI={(roi, en) =>\r\n              this.rendererdict[activeFileId].hoverROI(roi, en)\r\n            }\r\n            // tool parameters\r\n            tool={this.tools[this.state.activeTool]}\r\n            // import export parametersets\r\n            onExportParameters={this.onExportParameters}\r\n            onImportParameters={this.onImportParameters}\r\n            allRoiLayers={roiLayers}\r\n            deleteforAllScenes={this.deleteforAllScenes}\r\n            updateViewer={this.updateViewer}\r\n            onChangeLayers={() => {\r\n              if (this._isMounted) this.forceUpdate();\r\n            }}\r\n            onSelectLayer={(e, callback) => {\r\n              this.props.projectContext.setState(\r\n                { selectedLayer: e },\r\n                callback\r\n              );\r\n            }}\r\n            opacity={opacity}\r\n            onChangeOpacity={(e) => this.setMountedState({ opacity: e })}\r\n            setSelectedLayer={this.setSelectedLayer}\r\n            updateStructureChange={this.updateStructureChange}\r\n            setAIFormData={this.setAIFormData}\r\n            formDataAICockpit={this.state.formDataAICockpit}\r\n            setSideBarWidth={this.setSideBarWidth}\r\n            onUpdateDimensions={() => this.updateDimensions()}\r\n            showFirstAccordion={this.state.showFirstAccordion}\r\n            toggleShowFirstAccordion={this.toggleShowFirstAccordion}\r\n            aiUsedStructures={this.state.aiUsedStructures}\r\n            setAiUsedStructures={this.setAiUsedStructures}\r\n          />\r\n        )}\r\n        <ClassroomChat classRoomChatWidth={this.state.classRoomChatWidth} />\r\n      </Grid>\r\n    );\r\n  }\r\n}\r\n\r\nViewer.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  persistentStorage: PropTypes.object,\r\n  projectContext: PropTypes.object,\r\n  id: PropTypes.string,\r\n  tiles: PropTypes.object,\r\n  projectHistory: PropTypes.object,\r\n  spinloader: PropTypes.object,\r\n  resultTab: PropTypes.object,\r\n  activeFileId: PropTypes.string,\r\n  history: PropTypes.object,\r\n  roiLayers: PropTypes.array,\r\n  structures: PropTypes.array,\r\n};\r\n\r\nexport default withRouter(\r\n  withTiles(withAllViewerContexts(withResultTab(withStyles(styles)(Viewer))))\r\n);\r\n","// Framework imports\r\nimport \"./css/global.css\";\r\nimport React, { Component } from \"react\";\r\nimport { Route } from \"react-router-dom\";\r\nimport PropTypes from \"prop-types\";\r\n\r\n// External packages\r\nimport withStyles from \"@mui/styles/withStyles\";\r\nimport { Button } from \"@mui/material\";\r\nimport { withSnackbar } from \"notistack\";\r\n\r\n// HSA packages\r\nimport { PrivateRoute } from \"./common/components\";\r\nimport { Role } from \"./common/utils\";\r\nimport { TilesProvider } from \"./viewer/contexts/TilesContext\";\r\nimport AboutPage from \"./about/AboutPage\";\r\nimport AdminPage from \"./admin/AdminPage\";\r\nimport AudioViewer from \"./audioViewer/AudioViewer\";\r\nimport AIViewer from \"./aiViewer/AIViewer\";\r\nimport CasesPage from \"./cases/CasesPage\";\r\nimport CustomDialog from \"./common/components/CustomDialog\";\r\nimport FileViewer from \"./fileViewer/FileViewer\";\r\nimport HomePage from \"./home/HomePage\";\r\nimport LicensingPage from \"./licensing/LicensingPage\";\r\nimport LoginPage from \"./account/LoginPage\";\r\nimport NavigationBar from \"./common/components/NavigationBar\";\r\nimport PersistentStorageProvider from \"./viewer/contexts/PersistentStorageContext\";\r\nimport PredictionPage from \"./prediction/PredictionPage\";\r\nimport ProjectHistoryProvider from \"./viewer/contexts/ProjectHistoryContext\";\r\nimport ProjectProvider from \"./viewer/contexts/ProjectContext\";\r\nimport ProteomViewer from \"./proteomViewer/ProteomViewer\";\r\nimport Report from \"./home/Report\";\r\nimport ResultTabProvider from \"./viewer/contexts/ResultTabContext\";\r\nimport ScanProvider from \"./scanViewer/contexts/ScanViewerContext\";\r\nimport ScanViewer from \"./scanViewer/ScanViewer\";\r\nimport SettingsPage from \"./settings/SettingsPage\";\r\nimport SpectraViewer from \"./spectraViewer/SpectraViewer\";\r\nimport SpectraViewerProvider from \"./spectraViewer/contexts/SpectraViewerContext\";\r\nimport UserHistoryPage from \"./userhistory/UserHistoryPage\";\r\nimport Viewer from \"./viewer/Viewer\";\r\n\r\nconst styles = (theme) => ({\r\n  root: {\r\n    height: \"100vh\",\r\n    display: \"grid\",\r\n    gridTemplateRows: \"auto 1fr\",\r\n  },\r\n  menuButton: {\r\n    marginLeft: -12,\r\n    marginRight: 20,\r\n    height: 50,\r\n  },\r\n  appbarPlaceholder: theme.mixins.toolbar,\r\n});\r\n\r\nclass App extends Component {\r\n  static displayName = App.name;\r\n\r\n  render() {\r\n    const { classes } = this.props;\r\n\r\n    /**\r\n     * Adds a green success snackbar at bottom left of window.\r\n     * @param {string} str Message to display.\r\n     */\r\n    window.showSuccessSnackbar = (str) => {\r\n      this.props.enqueueSnackbar(str, {\r\n        variant: \"success\",\r\n      });\r\n    };\r\n\r\n    /**\r\n     * Adds an orange warning snackbar at bottom left of window.\r\n     * @param {string} str Message to display.\r\n     */\r\n    window.showWarningSnackbar = (str) => {\r\n      this.props.enqueueSnackbar(str, {\r\n        variant: \"warning\",\r\n      });\r\n    };\r\n\r\n    /**\r\n     * Adds a red error snackbar at bottom left of window.\r\n     * @param {string} str Message to display.\r\n     */\r\n    window.showErrorSnackbar = (str) => {\r\n      this.props.enqueueSnackbar(str, {\r\n        variant: \"error\",\r\n      });\r\n    };\r\n\r\n    /**\r\n     * Adds a black info snackbar at bottom left of window.\r\n     * @param {string} str Message to display.\r\n     * @param {function} action Action to perform once confirmed by user.\r\n     * @param {string} action_msg Message displayed on the primary button.\r\n     * @param {string} hide_msg Optional. Message displayed on dismiss button. If undefined, button will be hidden.\r\n     */\r\n    window.showActionSnackbar = (str, action, action_msg, hide_msg) => {\r\n      // Close the old snackbar before showing the new one\r\n      this.props.closeSnackbar();\r\n\r\n      this.props.enqueueSnackbar(str, {\r\n        action: (sbId) => (\r\n          <>\r\n            <Button\r\n              variant=\"contained\"\r\n              color=\"primary\"\r\n              size=\"small\"\r\n              onClick={() => {\r\n                action();\r\n                this.props.closeSnackbar(sbId);\r\n              }}\r\n            >\r\n              {action_msg}\r\n            </Button>\r\n            {(hide_msg || hide_msg === 0) && hide_msg && (\r\n              <Button\r\n                sx={{ marginLeft: \"3px\" }}\r\n                variant=\"contained\"\r\n                color=\"secondary\"\r\n                size=\"small\"\r\n                onClick={() => this.props.closeSnackbar(sbId)}\r\n              >\r\n                {hide_msg}\r\n              </Button>\r\n            )}\r\n          </>\r\n        ),\r\n        persist: true,\r\n      });\r\n    };\r\n\r\n    return (\r\n      <div className={classes.root}>\r\n        <div className={classes.appbarPlaceholder} />\r\n        <PrivateRoute\r\n          path=\"/audio_view/:id\"\r\n          component={({ match }) => <AudioViewer projectId={match.params.id} />}\r\n        />\r\n\r\n        <PrivateRoute path=\"/ai_view\" component={() => <AIViewer />} />\r\n\r\n        <PrivateRoute\r\n          path=\"/view/:id\"\r\n          component={({ match }) => (\r\n            <PersistentStorageProvider\r\n              projectId={match.params.id ? match.params.id : \"001\"}\r\n            >\r\n              <ProjectProvider>\r\n                <ProjectHistoryProvider historyDepth={20}>\r\n                  <ResultTabProvider>\r\n                    <TilesProvider>\r\n                      <Viewer id={match.params.id ? match.params.id : \"001\"} />\r\n                    </TilesProvider>\r\n                  </ResultTabProvider>\r\n                </ProjectHistoryProvider>\r\n              </ProjectProvider>\r\n            </PersistentStorageProvider>\r\n          )}\r\n        />\r\n\r\n        <PrivateRoute\r\n          path=\"/file_view/\"\r\n          component={() => (\r\n            <PersistentStorageProvider projectId=\"file_view\">\r\n              <TilesProvider>\r\n                <FileViewer />\r\n              </TilesProvider>\r\n            </PersistentStorageProvider>\r\n          )}\r\n        />\r\n\r\n        <PrivateRoute\r\n          path=\"/proteome_view/:id\"\r\n          component={({ match }) => (\r\n            <ProteomViewer id={match.params.id ? match.params.id : \"001\"} />\r\n          )}\r\n        />\r\n        <PrivateRoute\r\n          path=\"/esr_view/:id\"\r\n          component={({ match }) => (\r\n            <SpectraViewerProvider>\r\n              <SpectraViewer id={match.params.id ? match.params.id : \"001\"} />\r\n            </SpectraViewerProvider>\r\n          )}\r\n        />\r\n        <PrivateRoute\r\n          path=\"/scan_view\"\r\n          component={() => (\r\n            <ScanProvider>\r\n              <ScanViewer />\r\n            </ScanProvider>\r\n          )}\r\n        />\r\n        <PrivateRoute path=\"/cases\" component={() => <CasesPage />} />\r\n        <PrivateRoute path=\"/prediction\" component={() => <PredictionPage />} />\r\n        <PrivateRoute\r\n          path=\"/report/:id\"\r\n          component={({ match }) => <Report id={match.params.id} />}\r\n        />\r\n        <Route path=\"/login\" component={() => <LoginPage />} />\r\n        <Route path=\"/licensing\" component={() => <LicensingPage />} />\r\n        <PrivateRoute exact path=\"/\" component={() => <HomePage />} />\r\n        <PrivateRoute path=\"/settings\" component={() => <SettingsPage />} />\r\n        <PrivateRoute\r\n          path=\"/userhistory\"\r\n          component={() => <UserHistoryPage />}\r\n        />\r\n        <PrivateRoute path=\"/about\" component={() => <AboutPage />} />\r\n        <PrivateRoute\r\n          path=\"/admin\"\r\n          roles={[Role.Admin]}\r\n          component={AdminPage}\r\n        />\r\n\r\n        <NavigationBar showDevButtons={false} />\r\n        <CustomDialog />\r\n      </div>\r\n    );\r\n  }\r\n}\r\n\r\nApp.propTypes = {\r\n  classes: PropTypes.object.isRequired,\r\n  enqueueSnackbar: PropTypes.func.isRequired,\r\n  closeSnackbar: PropTypes.func.isRequired,\r\n};\r\n\r\nexport default withSnackbar(withStyles(styles)(App));\r\n","// In production, we register a service worker to serve assets from local cache.\r\n\r\n// This lets the app load faster on subsequent visits in production, and gives\r\n// it offline capabilities. However, it also means that developers (and users)\r\n// will only see deployed updates on the \"N+1\" visit to a page, since previously\r\n// cached resources are updated in the background.\r\n\r\n// To learn more about the benefits of this model, read https://goo.gl/KwvDNy.\r\n// This link also includes instructions on opting out of this behavior.\r\n\r\nconst isLocalhost = Boolean(\r\n  window.location.hostname === 'localhost' ||\r\n  // [::1] is the IPv6 localhost address.\r\n  window.location.hostname === '[::1]' ||\r\n  // 127.0.0.1/8 is considered localhost for IPv4.\r\n  window.location.hostname.match(\r\n    /^127(?:\\.(?:25[0-5]|2[0-4][0-9]|[01]?[0-9][0-9]?)){3}$/\r\n  )\r\n);\r\n\r\nexport default function register () {\r\n  if (process.env.NODE_ENV === 'production' && 'serviceWorker' in navigator) {\r\n    // The URL constructor is available in all browsers that support SW.\r\n    const publicUrl = new URL(process.env.PUBLIC_URL, window.location);\r\n    if (publicUrl.origin !== window.location.origin) {\r\n      // Our service worker won't work if PUBLIC_URL is on a different origin\r\n      // from what our page is served on. This might happen if a CDN is used to\r\n      // serve assets; see https://github.com/facebookincubator/create-react-app/issues/2374\r\n      return;\r\n    }\r\n\r\n    window.addEventListener('load', () => {\r\n      const swUrl = `${process.env.PUBLIC_URL}/service-worker.js`;\r\n\r\n      if (isLocalhost) {\r\n        // This is running on localhost. Lets check if a service worker still exists or not.\r\n        checkValidServiceWorker(swUrl);\r\n      } else {\r\n        // Is not local host. Just register service worker\r\n        registerValidSW(swUrl);\r\n      }\r\n    });\r\n  }\r\n}\r\n\r\nfunction registerValidSW (swUrl) {\r\n  navigator.serviceWorker\r\n    .register(swUrl)\r\n    .then(registration => {\r\n      registration.onupdatefound = () => {\r\n        const installingWorker = registration.installing;\r\n        installingWorker.onstatechange = () => {\r\n          if (installingWorker.state === 'installed') {\r\n            if (navigator.serviceWorker.controller) {\r\n              // At this point, the old content will have been purged and\r\n              // the fresh content will have been added to the cache.\r\n              // It's the perfect time to display a \"New content is\r\n              // available; please refresh.\" message in your web app.\r\n              console.log('New content is available; please refresh.');\r\n            } else {\r\n              // At this point, everything has been precached.\r\n              // It's the perfect time to display a\r\n              // \"Content is cached for offline use.\" message.\r\n              console.log('Content is cached for offline use.');\r\n            }\r\n          }\r\n        };\r\n      };\r\n    })\r\n    .catch(error => {\r\n      console.error('Error during service worker registration:', error);\r\n    });\r\n}\r\n\r\nfunction checkValidServiceWorker (swUrl) {\r\n  // Check if the service worker can be found. If it can't reload the page.\r\n  fetch(swUrl)\r\n    .then(response => {\r\n      // Ensure service worker exists, and that we really are getting a JS file.\r\n      if (\r\n        response.status === 404 ||\r\n        response.headers.get('content-type').indexOf('javascript') === -1\r\n      ) {\r\n        // No service worker found. Probably a different app. Reload the page.\r\n        navigator.serviceWorker.ready.then(registration => {\r\n          registration.unregister().then(() => {\r\n            window.location.reload();\r\n          });\r\n        });\r\n      } else {\r\n        // Service worker found. Proceed as normal.\r\n        registerValidSW(swUrl);\r\n      }\r\n    })\r\n    .catch(() => {\r\n      console.log(\r\n        'No internet connection found. App is running in offline mode.'\r\n      );\r\n    });\r\n}\r\n\r\nexport function unregister () {\r\n  if ('serviceWorker' in navigator) {\r\n    navigator.serviceWorker.ready.then(registration => {\r\n      registration.unregister();\r\n    });\r\n  }\r\n}\r\n","import \"bootstrap/dist/css/bootstrap.css\";\r\nimport React from \"react\";\r\nimport ReactDOM from \"react-dom\";\r\nimport { BrowserRouter } from \"react-router-dom\";\r\nimport App from \"./App\";\r\nimport { unregister as unregisterServiceWorker } from \"./registerServiceWorker\";\r\nimport SpinloaderProvider from \"./common/components/Spinloader\";\r\n\r\nimport {\r\n  ThemeProvider,\r\n  StyledEngineProvider,\r\n  createTheme,\r\n} from \"@mui/material/styles\";\r\nimport { SnackbarProvider } from \"notistack\";\r\n\r\nconst baseUrl = document.getElementsByTagName(\"base\")[0].getAttribute(\"href\");\r\nconst rootElement = document.getElementById(\"root\");\r\nexport const theme = createTheme({\r\n  palette: {\r\n    selected: {\r\n      main: \"rgba(0, 0, 0, 0.2)\",\r\n    },\r\n    primary: {\r\n      // light: will be calculated from palette.primary.main,\r\n      main: \"#0673C1\",\r\n      inactive: \"rgba(0, 0, 0, 0.54)\",\r\n      // dark: will be calculated from palette.primary.main,\r\n      // contrastText: will be calculated to contrast with palette.primary.main\r\n    },\r\n    secondary: {\r\n      // light: will be calculated from palette.primary.main,\r\n      main: \"#182A42\",\r\n      // dark: will be calculated from palette.primary.main,\r\n      // contrastText: will be calculated to contrast with palette.primary.main\r\n    },\r\n    icon: {\r\n      main: \"rgba(0, 0, 0, 0.54)\",\r\n    },\r\n    default: {\r\n      main: \"#ffffff\",\r\n    },\r\n    error: {\r\n      main: \"#d84646\",\r\n    },\r\n    success: {\r\n      main: \"#4e9a51\",\r\n    },\r\n    warning: {\r\n      main: \"#f68a1c\",\r\n    },\r\n  },\r\n  typography: {\r\n    useNextVariants: true,\r\n  },\r\n});\r\n\r\nReactDOM.render(\r\n  <BrowserRouter basename={baseUrl}>\r\n    <StyledEngineProvider injectFirst>\r\n      <ThemeProvider theme={theme}>\r\n        <SpinloaderProvider>\r\n          <SnackbarProvider maxSnack={3}>\r\n            <App />\r\n          </SnackbarProvider>\r\n        </SpinloaderProvider>\r\n      </ThemeProvider>\r\n    </StyledEngineProvider>\r\n  </BrowserRouter>,\r\n  rootElement\r\n);\r\n\r\nunregisterServiceWorker();\r\n"],"sourceRoot":""}